#! /bin/sh -x
blastn -query /net/snowman/vol/export4/blastqa/queries/nt.555 -db UniVec \
    -outfmt 8 -out 1.out -remote
blastp -query /net/snowman/vol/export4/blastqa/queries/aa.129295 -db ecoli \
-outfmt 8 -out 2.out -remote
psiblast -query /net/snowman/vol/export4/blastqa/queries/aa.129295 -db ecoli \
-outfmt 8 -num_iterations 2 -remote -out 3.out
blastn -query /net/snowman/vol/export4/blastqa/queries/nt.555 -db UniVec \
    -outfmt 8 -task blastn -out 4.out -remote
blastx -query \
#/net/snowman/vol/export4/blastqa/camacho/blastx_benchmark/danio_rerio.97k.fsa \
#-db /net/snowman/vol/export4/blastqa/camacho/blastx_benchmark/drosoph \
#-num_threads 4 -outfmt 8 -out 56.out -remote
psiblast -query /net/snowman/vol/export4/blastqa/queries/aa.129295 -db pdbaa \
-outfmt 5 -out 68.out -remote
psiblast -query /net/snowman/vol/export4/blastqa/queries/aa.129295 -db pdbaa \
    -outfmt 5 -num_iterations 5 -out 69.out -remote
blastp -query /net/snowman/vol/export4/blastqa/queries/aa.2queries_small -db pdbaa -outfmt 5 -remote -out 70.out
blastx -query /net/snowman/vol/export4/blastqa/queries/nt.2queries_small -db pdbaa -outfmt 5 -remote -out 71.out
tblastx -query /net/snowman/vol/export4/blastqa/queries/nt.2queries_small -db patnt -outfmt 5 -remote -out 72.out
tblastn -query /net/snowman/vol/export4/blastqa/queries/aa.2queries_small -db patnt -outfmt 5 -remote -out 73.out
blastn -query /net/snowman/vol/export4/blastqa/queries/nt.2queries_small -db patnt -outfmt 5 -remote -out 74.out
rpsblast -query /net/snowman/vol/export4/blastqa/queries/aa.2queries_small -db cdd -outfmt 5 -remote -out 75.out
rpstblastn -query /net/snowman/vol/export4/blastqa/queries/nt.2queries_small -db cdd -outfmt 5 -remote -out 76.out
blastn -db dbindex/9606/allcontig_and_rna -query /net/snowman/vol/export4/blastqa/queries/nt.u93236 -use_index true -outfmt 8 -remote -out 78.out
blastn -task blastn -db dbindex/10090/allcontig_and_rna -query /net/snowman/vol/export4/blastqa/queries/nt.u93237.lower_case -lcase_masking -outfmt 8 -remote -out 79.out
blastn -task blastn -db dbindex/10090/allcontig_and_rna -query /net/snowman/vol/export4/blastqa/queries/nt.u93237.lower_case -ungapped -outfmt 8 -remote -out 80.out
blastn -task blastn-short -db gpipe/10090/rna -query /net/snowman/vol/export4/blastqa/queries/nt.short_u93236 -outfmt 8 -remote -out 81.out
blastn -task blastn -query /net/snowman/vol/export4/blastqa/queries/nt.u93237 -subject /net/snowman/vol/export4/blastqa/queries/nt.u93236 -outfmt 8 -remote -out 82.out
blastn -db "nt est" -query /net/snowman/vol/export4/blastqa/queries/nt.u93236 -outfmt 8 -remote -out 84.out
blastn -db "nt" -query /net/snowman/vol/export4/blastqa/queries/nt.u93236 -ungapped -outfmt 8 -remote -out 85.out
blastn -task dc-megablast -db dbindex/10090/allcontig_and_rna -query /net/snowman/vol/export4/blastqa/queries/nt.u93237 -outfmt 8 -remote -out 86.out
blastn -task dc-megablast -db dbindex/10090/allcontig_and_rna -query /net/snowman/vol/export4/blastqa/queries/nt.u93237 -ungapped -outfmt 8 -remote -out 88.out
blastn -word_size 500 -evalue 1.0e-6 -query /net/snowman/vol/export4/blastqa/queries/NC_000011.8.fsa -subject /net/snowman/vol/export4/blastqa/queries/NC_000011.7.fsa -dust no -outfmt 8 -remote -out 89.out
blastp -db nr -query /net/snowman/vol/export4/blastqa/queries/aa.2queries_small -ungapped -comp_based_stats 0 -outfmt 8 -remote -out 90.out
blastp -query /net/snowman/vol/export4/blastqa/queries/aa.129295 -subject /net/snowman/vol/export4/blastqa/queries/aa.cat -outfmt 8 -remote -out 91.out
blastx -db refseq_protein -query /net/snowman/vol/export4/blastqa/queries/nt.2655203 -gilist Rattus_norvegicus.p.gil -outfmt 8 -remote -out 92.out
blastx -db gpipe/9913/protein -query /net/snowman/vol/export4/blastqa/queries/nt.u93236 -outfmt 8 -remote -out 93.out
blastx -db gpipe/9913/protein -query /net/snowman/vol/export4/blastqa/queries/nt.u93236 -ungapped -outfmt 8 -remote -out 94.out
tblastn -db est -query /net/snowman/vol/export4/blastqa/queries/aa.129295 -num_threads 2 -outfmt 8 -remote -out 96.out
tblastn -query /net/snowman/vol/export4/blastqa/queries/aa.CAH68860 -subject /net/snowman/vol/export4/blastqa/queries/nt.u93236 -outfmt 8 -remote -out 100.out
tblastn -db est -query /net/snowman/vol/export4/blastqa/queries/aa.129295 -num_threads 2 -ungapped -comp_based_stats F -outfmt 8 -remote -out 102.out
tblastx -query /net/snowman/vol/export4/blastqa/queries/nt.u93236 -subject /net/snowman/vol/export4/blastqa/queries/nt.u93237 -outfmt 8 -remote -out 103.out
blastx -query /net/snowman/vol/export4/blastqa/queries/nt.u93236 -subject /net/snowman/vol/export4/blastqa/queries/aa.CAH68860 -outfmt 8 -remote -out 104.out
blastn -db gpipe/9606/ref_contig -query /net/snowman/vol/export4/blastqa/queries/nt.u93237 -outfmt 7  -remote -out 105.out
psiblast -db pataa -query /net/snowman/vol/export4/blastqa/queries/aa.231729 -phi_pattern /net/snowman/vol/export4/blastqa/queries/pat.231729 -num_iterations 2 -outfmt 5 -remote -out 106.out
blastx -db pataa -query /net/snowman/vol/export4/blastqa/queries/nt.multiple_queries -outfmt 5 -remote -out 107.out
#blastdbcmd -info -db nr -remote -out 108.out
#blastdbcmd -info -db swissprot -remote -out 109.out
#blastdbcmd -entry 129295 -outfmt %T -remote -out 110.out
#blastdbcmd -entry 129295 -outfmt %L -remote -out 111.out
#blastdbcmd  -entry 129295 -outfmt %l -remote -out 112.out
#blastdbcmd  -entry 129295 -outfmt %t -remote -out 113.out
#blastdbcmd -entry 129295 -outfmt %o -remote -out 114.out
#blastdbcmd -entry 129295 -outfmt %g -remote -out 115.out
#blastdbcmd -entry 129295 -outfmt %a -remote -out 116.out
#blastdbcmd -entry 129295 -outfmt %s -remote -out 117.out
#blastdbcmd -entry 129295 -outfmt %s -range 7-200 -remote -out 118.out
#blastdbcmd -entry 129295 -outfmt %s -range 7-1000 -remote -out 119.out
#blastdbcmd -entry 129295  -remote -out 120.out
#blastdbcmd -entry 129295 -range 10-24 -remote -out 121.out
#blastdbcmd -entry 129295 -outfmt %P -remote -out 122.out
#blastdbcmd -pig 1067150 -outfmt %g -remote -out 123.out
#blastdbcmd -entry all -db month.sts -outfmt %g -remote -out 124.out
#blastdbcmd -entry all -db month.sts -remote -out 125.out
#blastdbcmd -entry 170121644 -target_only -remote -out 126.out
#blastdbcmd -entry 1p86 -ctrl_a -remote -out 127.out
#blastdbcmd -entry 129296 -target_only -line_length 50 -remote -out 128.out
#blastdbcmd -entry_batch /net/snowman/vol/export4/blastqa/queries/multiple_prot_gis.gi -outfmt %l -remote -out 129.out
#blastdbcmd  -strand minus -db nt -entry 555 -remote -out 130.out
#blastdbcmd -db pdb -entry 1npq -remote -out 131.out
#blastdbcmd -db pdb -entry 1npq -get_dups -remote -out 132.out
#blastdbcmd -entry 'gnl|ti|948895035' -db /blast/db/blast/Trace/Homo_sapiens_WGS  -remote -out 133.out
blastp -query  /net/snowman/vol/export4/blastqa/queries/aa.2queries -subject /net/snowman/vol/export4/blastqa/queries/aa.129295 -parse_deflines -remote -out 134.out
blastn -db ecoli -negative_gilist /net/snowman/vol/export4/blastqa/queries/17861 -query /net/snowman/vol/export4/blastqa/queries/17861  -remote -out 136.out
blastp -db ecoli -query /net/snowman/vol/export4/blastqa/queries/1786183.gi -max_target_seqs 10 -remote -out 137.out
blastn  -db gpipe/9606/ref_contig -query /net/snowman/vol/export4/blastqa/queries/nt.u93237 -window_masker_taxid 9606 -outfmt 8 -remote -out 138.out
blastn -db ecoli -query /net/snowman/vol/export4/blastqa/queries/1786181.gi -remote -remote -out 139.out
blastn -db ecoli -query /net/snowman/vol/export4/blastqa/queries/1786181.na.fsa -remote -remote -out 140.out
blastn -db non_existent_db -query /net/snowman/vol/export4/blastqa/queries/1786181.gi -remote -remote -out 141.out
#blastdbcmd -entry 27807185 -db swissprot  -remote -out 142.out