Tool details

class="error"> Tool name value=""> class="error"> Tool URL value=""> class="error"> Group or organization that produced the tool value=""> class="error"> Group or organization URL value=""> class="error"> Contact person for the tool (for any help queries, etc.) value=""> class="error"> Contact email address value=""> class="error">
Tool features (tick all that apply)
• checked>ontology or annotation browser
• checked>ontology or annotation search engine
• checked>ontology or annotation visualization
• checked>ontology or annotation editor
• checked>database or data warehouse
• checked>software library
• checked>statistical analysis
• checked>term enrichment
• checked>text mining
• checked>functional similarity
• checked>semantic similarity
• checked>protein interaction analysis
• checked>slimmer-type tool (annotations transferred to ancestral terms)
• checked>other analysis not mentioned above
• Other features (please specify)<!--TMPL_IF NAME="tool_type_other"--><!--TMPL_VAR NAME="tool_type_other"--><!--/TMPL_IF-->
class="error"> Brief description of tool <!--TMPL_IF NAME="description"--><!--TMPL_VAR NAME="description"--><!--/TMPL_IF--> class="error"> Is the tool web-based or standalone (can be downloaded and installed on your computer)?
If the tool is available in a standalone version, please indicate which operating systems it is compatible with (tick all that apply).
• checked>web-based
• checked>standalone, Windows compatible
• checked>standalone, Mac OS X compatible
• checked>standalone, Unix compatible
• checked>standalone, Linux compatible
class="error"> checked>Please check the box if the tool is free for academics. class="error"> Is the tool open source?
checked> yes checked> no class="error"> Publications related to the tool (please give the PubMed ID or DOI if possible) [optional] <!--TMPL_IF NAME="publications"--><!--TMPL_VAR NAME="publications"--><!--/TMPL_IF-->

GO data details

class="error">
GO data used (tick all that apply)
• Ontology data
  • checked>terms
  • checked>definitions and comments
  • checked>synonyms
  • checked>cross-references
  • checked>relationships
  • checked>subsets or GO slim terms
• Annotation data
  • checked>gene product data
  • checked>evidence codes
  • checked>references
  • checked>qualifiers (e.g. not, contributes to)
  • checked>taxon
• Other data (please specify) <!--TMPL_IF NAME="go_data_other"--><!--TMPL_VAR NAME="go_data_other"--><!--/TMPL_IF-->
class="error">
Source and/or format of GO data (tick all that apply)

• Downloads from the Gene Ontology (via website, FTP or CVS)
  • checked>ontology files
  • checked>gene association files
  • checked>GO database dumps
  • checked>XML format files
  • checked>OWL format files
  • checked>other GO website download not mentioned above
• If you retrieve GO data integrated into another database (e.g. UniProt), please state the source of the data value="">

checked>Not applicable (e.g. GO data not integrated into tool or users provide their own data)

class="error"> Frequency of data update
• checked>daily
• checked>weekly (or more frequently)
• checked>monthly (or more frequently)
• checked>every three months (or more frequently)
• checked>no fixed update schedule
• checked>not applicable (users provide data)

• Any other comments? [optional]<!--TMPL_IF NAME="comments"--><!--TMPL_VAR NAME="comments"--><!--/TMPL_IF-->