2013-10-16 19:47:40,574 INFO  (ParserWrapper:186) parsing: ontology/extensions/x-signaling.owl
2013-10-16 19:47:40,576 INFO  (ParserWrapper:201) parsing: file:/Users/cjm/repos/go/experimental/lego/owl/gaf-derived/ontology/extensions/x-signaling.owl using uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@6f9bb25a
2013-10-16 19:47:40,578 INFO  (ParserWrapper:68) Start loading ontology: file:/Users/cjm/repos/go/experimental/lego/owl/gaf-derived/ontology/extensions/x-signaling.owl from: file:/Users/cjm/repos/go/experimental/lego/owl/gaf-derived/ontology/extensions/x-signaling.owl
2013-10-16 19:47:40,686 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/ro_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/ro_import.owl
2013-10-16 19:47:40,861 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/ro_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/ro_import.owl
2013-10-16 19:47:40,862 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/go-plus.owl from: file:/Users/cjm/repos/go/ontology/extensions/go-plus.owl
2013-10-16 19:47:40,864 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go.owl from: file:/Users/cjm/repos/go/ontology/go.owl
2013-10-16 19:47:49,894 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go.owl from: file:/Users/cjm/repos/go/ontology/go.owl
2013-10-16 19:47:49,906 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/chebi_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/chebi_import.owl
2013-10-16 19:47:50,299 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/chebi_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/chebi_import.owl
2013-10-16 19:47:50,306 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/cl_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/cl_import.owl
2013-10-16 19:47:50,328 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/cl_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/cl_import.owl
2013-10-16 19:47:50,335 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/po_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/po_import.owl
2013-10-16 19:47:50,360 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/po_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/po_import.owl
2013-10-16 19:47:50,367 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-taxon-importer.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-taxon-importer.owl
2013-10-16 19:47:50,369 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-taxon.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-taxon.owl
2013-10-16 19:47:50,405 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-taxon.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-taxon.owl
2013-10-16 19:47:50,406 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/ncbitaxon_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/ncbitaxon_import.owl
2013-10-16 19:47:50,419 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/ncbitaxon_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/ncbitaxon_import.owl
2013-10-16 19:47:50,420 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-disjoint.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-disjoint.owl
2013-10-16 19:47:50,438 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-disjoint.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-disjoint.owl
2013-10-16 19:47:50,444 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-taxon-importer.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-taxon-importer.owl
2013-10-16 19:47:50,974 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/go-plus.owl from: file:/Users/cjm/repos/go/ontology/extensions/go-plus.owl
2013-10-16 19:47:50,974 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-mf-protein.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-mf-protein.owl
2013-10-16 19:47:51,004 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-mf-protein.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-mf-protein.owl
2013-10-16 19:47:51,004 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-bp-protein.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-bp-protein.owl
2013-10-16 19:47:51,010 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-bp-protein.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-bp-protein.owl
2013-10-16 19:47:51,010 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/pr_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/pr_import.owl
2013-10-16 19:47:51,018 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/pr_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/pr_import.owl
2013-10-16 19:47:51,074 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl from: file:/Users/cjm/repos/go/experimental/lego/owl/gaf-derived/ontology/extensions/x-signaling.owl
2013-10-16 19:47:51,345 INFO  (OWLGraphWrapperBasic:209) Adding 468055 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go.owl>) VersionIRI(<http://purl.obolibrary.org/obo/go/2013-10-16/go.owl>))) [Axioms: 468055 Logical Axioms: 86956]
2013-10-16 19:47:52,115 INFO  (OWLGraphWrapperBasic:209) Adding 2062 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-taxon.owl>))) [Axioms: 2062 Logical Axioms: 501]
2013-10-16 19:47:52,120 INFO  (OWLGraphWrapperBasic:209) Adding 305 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein.owl>))) [Axioms: 305 Logical Axioms: 70]
2013-10-16 19:47:52,128 INFO  (OWLGraphWrapperBasic:209) Adding 26328 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/go-plus.owl>))) [Axioms: 26328 Logical Axioms: 7677]
2013-10-16 19:47:52,183 INFO  (OWLGraphWrapperBasic:209) Adding 0 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-taxon-importer.owl>))) [Axioms: 0 Logical Axioms: 0]
2013-10-16 19:47:52,184 INFO  (OWLGraphWrapperBasic:209) Adding 2142 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/cl_import.owl>))) [Axioms: 2142 Logical Axioms: 987]
2013-10-16 19:47:52,186 INFO  (OWLGraphWrapperBasic:209) Adding 954 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/ncbitaxon_import.owl>))) [Axioms: 954 Logical Axioms: 193]
2013-10-16 19:47:52,187 INFO  (OWLGraphWrapperBasic:209) Adding 94 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-disjoint.owl>))) [Axioms: 94 Logical Axioms: 45]
2013-10-16 19:47:52,188 INFO  (OWLGraphWrapperBasic:209) Adding 1241 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-mf-protein.owl>))) [Axioms: 1241 Logical Axioms: 313]
2013-10-16 19:47:52,189 INFO  (OWLGraphWrapperBasic:209) Adding 1004 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/po_import.owl>))) [Axioms: 1004 Logical Axioms: 486]
2013-10-16 19:47:52,191 INFO  (OWLGraphWrapperBasic:209) Adding 978 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/pr_import.owl>))) [Axioms: 978 Logical Axioms: 325]
2013-10-16 19:47:52,192 INFO  (OWLGraphWrapperBasic:209) Adding 1422 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/ro_import.owl>))) [Axioms: 1422 Logical Axioms: 362]
2013-10-16 19:47:52,202 INFO  (OWLGraphWrapperBasic:209) Adding 29902 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/chebi_import.owl>))) [Axioms: 29902 Logical Axioms: 18872]
2013-10-16 19:47:52,440 INFO  (MinimalModelGenerator:207) Creating abox ontology. mgr = uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@6f9bb25a
2013-10-16 19:47:52,440 INFO  (MinimalModelGenerator:221) Creating query ontology
2013-10-16 19:47:52,440 INFO  (MinimalModelGenerator:232) manager(T) = uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@6f9bb25a
2013-10-16 19:47:52,440 INFO  (MinimalModelGenerator:233) manager(A) = uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@6f9bb25a
2013-10-16 19:47:52,440 INFO  (MinimalModelGenerator:234) manager(Q) = uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@6f9bb25a
2013-10-16 19:47:52,564 INFO  (MinimalModelGenerator:250) Creating reasoner on Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__query>))) [Axioms: 0 Logical Axioms: 0] ImportsClosure=[Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 0 Logical Axioms: 0], Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__query>))) [Axioms: 0 Logical Axioms: 0], Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl>))) [Axioms: 513448 Logical Axioms: 116859]]
2013-10-16 19:47:52,638 INFO  (Reasoner:117) ELK reasoner was created
2013-10-16 19:47:52,907 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002295> <http://purl.obolibrary.org/obo/CARO_0000003>)
2013-10-16 19:47:53,003 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,076 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/BFO_0000054> <http://purl.obolibrary.org/obo/BFO_0000007>)
2013-10-16 19:47:53,178 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,192 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,198 WARN  (ChangeIndexingProcessor:66) ELK does not support SymmetricObjectProperty. Axiom ignored:
SymmetricObjectProperty(<http://purl.obolibrary.org/obo/RO_0002371>)
2013-10-16 19:47:53,209 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002222> <http://purl.obolibrary.org/obo/BFO_0000003>)
2013-10-16 19:47:53,215 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002337> <http://purl.obolibrary.org/obo/BFO_0000002>)
2013-10-16 19:47:53,217 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002220> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 19:47:53,251 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/BFO_0000062> <http://purl.obolibrary.org/obo/BFO_0000003>)
2013-10-16 19:47:53,252 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/BFO_0000063> <http://purl.obolibrary.org/obo/BFO_0000003>)
2013-10-16 19:47:53,262 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 19:47:53,309 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002101> <http://purl.obolibrary.org/obo/CARO_0001001>)
2013-10-16 19:47:53,330 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,349 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002202> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 19:47:53,351 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002204> <http://purl.obolibrary.org/obo/BFO_0000002>)
2013-10-16 19:47:53,354 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002205> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 19:47:53,356 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002206> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 19:47:53,367 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/BFO_0000007>)
2013-10-16 19:47:53,370 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002214> <http://purl.obolibrary.org/obo/BFO_0000002>)
2013-10-16 19:47:53,397 WARN  (ChangeIndexingProcessor:66) ELK does not support DisjointUnion. Axiom ignored:
DisjointUnion(<http://purl.obolibrary.org/obo/GO_0008150> <http://purl.obolibrary.org/obo/GO_0044699> <http://purl.obolibrary.org/obo/GO_0051704>)
2013-10-16 19:47:53,404 WARN  (ChangeIndexingProcessor:66) ELK does not support FunctionalObjectProperty. Axiom ignored:
FunctionalObjectProperty(<http://purl.obolibrary.org/obo/RO_0002201>)
2013-10-16 19:47:53,431 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002091> <http://purl.obolibrary.org/obo/BFO_0000003>)
2013-10-16 19:47:53,460 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0001025> <http://purl.obolibrary.org/obo/RO_0001015>)
2013-10-16 19:47:53,470 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0001001> <http://purl.obolibrary.org/obo/RO_0001000>)
2013-10-16 19:47:53,473 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0001018> <http://purl.obolibrary.org/obo/RO_0001019>)
2013-10-16 19:47:53,477 WARN  (ChangeIndexingProcessor:66) ELK does not support IrreflexiveObjectProperty. Axiom ignored:
IrreflexiveObjectProperty(<http://purl.obolibrary.org/obo/RO_0002351>)
2013-10-16 19:47:53,483 WARN  (ChangeIndexingProcessor:66) ELK does not support SymmetricObjectProperty. Axiom ignored:
SymmetricObjectProperty(<http://purl.obolibrary.org/obo/RO_0002159>)
2013-10-16 19:47:53,483 WARN  (ChangeIndexingProcessor:66) ELK does not support SymmetricObjectProperty. Axiom ignored:
SymmetricObjectProperty(<http://purl.obolibrary.org/obo/RO_0002158>)
2013-10-16 19:47:53,505 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectAllValuesFrom. Axiom ignored:
SubClassOf(<http://purl.obolibrary.org/obo/CL_0000000> ObjectAllValuesFrom(<http://purl.obolibrary.org/obo/RO_0002207> <http://purl.obolibrary.org/obo/CL_0000000>))
2013-10-16 19:47:53,519 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/RO_0000056>)
2013-10-16 19:47:53,519 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0000053> <http://purl.obolibrary.org/obo/RO_0000052>)
2013-10-16 19:47:53,527 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,537 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,539 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002207> ObjectUnionOf(<http://purl.obolibrary.org/obo/CARO_0010000> <http://purl.obolibrary.org/obo/CL_0000000>))
2013-10-16 19:47:53,571 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
SubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0001025> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0001025>)) <http://purl.obolibrary.org/obo/RO_0002379>)
2013-10-16 19:47:53,587 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002132> ObjectUnionOf(<http://purl.obolibrary.org/obo/CL_0000540> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CL_0000540>)))
2013-10-16 19:47:53,592 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002150> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 19:47:53,605 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,608 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectAllValuesFrom. Axiom ignored:
SubClassOf(<http://purl.obolibrary.org/obo/CARO_0010000> ObjectAllValuesFrom(<http://purl.obolibrary.org/obo/RO_0002207> <http://purl.obolibrary.org/obo/CARO_0010000>))
2013-10-16 19:47:53,624 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002162> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 19:47:53,652 WARN  (ChangeIndexingProcessor:66) ELK does not support DisjointUnion. Axiom ignored:
DisjointUnion(<http://purl.obolibrary.org/obo/GO_0016055> <http://purl.obolibrary.org/obo/GO_0035567> <http://purl.obolibrary.org/obo/GO_0060070>)
2013-10-16 19:47:53,654 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002103> ObjectUnionOf(<http://purl.obolibrary.org/obo/CL_0000540> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CL_0000540>)))
2013-10-16 19:47:53,679 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002303> <http://purl.obolibrary.org/obo/ENVO_0002036>)
2013-10-16 19:47:53,710 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002333> <http://purl.obolibrary.org/obo/RO_0002327>)
2013-10-16 19:47:53,716 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002350> <http://purl.obolibrary.org/obo/RO_0002351>)
2013-10-16 19:47:53,734 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,759 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002315> <http://purl.obolibrary.org/obo/CL_0000000>)
2013-10-16 19:47:53,783 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,813 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,851 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,884 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002006> <http://purl.obolibrary.org/obo/RO_0002130>)
2013-10-16 19:47:53,884 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002005> <http://purl.obolibrary.org/obo/RO_0002134>)
2013-10-16 19:47:53,895 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002349> <http://purl.obolibrary.org/obo/CL_0000000>)
2013-10-16 19:47:53,899 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002348> <http://purl.obolibrary.org/obo/CL_0000000>)
2013-10-16 19:47:53,902 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002087> <http://purl.obolibrary.org/obo/RO_0002090>)
2013-10-16 19:47:53,902 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002085> <http://purl.obolibrary.org/obo/RO_0002092>)
2013-10-16 19:47:53,902 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002084> <http://purl.obolibrary.org/obo/RO_0002093>)
2013-10-16 19:47:53,902 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002088> <http://purl.obolibrary.org/obo/RO_0002091>)
2013-10-16 19:47:53,918 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002107> <http://purl.obolibrary.org/obo/RO_0002108>)
2013-10-16 19:47:53,919 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002105> <http://purl.obolibrary.org/obo/RO_0002109>)
2013-10-16 19:47:53,939 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0003000> <http://purl.obolibrary.org/obo/BFO_0000040>)
2013-10-16 19:47:53,941 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0003001> <http://purl.obolibrary.org/obo/BFO_0000040>)
2013-10-16 19:47:53,945 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0002378> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002376>))
2013-10-16 19:47:53,949 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/BFO_0000050>)
2013-10-16 19:47:53,949 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/BFO_0000055> <http://purl.obolibrary.org/obo/BFO_0000054>)
2013-10-16 19:47:53,950 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/BFO_0000062> <http://purl.obolibrary.org/obo/BFO_0000063>)
2013-10-16 19:47:53,956 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/BFO_0000067>)
2013-10-16 19:47:53,963 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:53,967 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002002> <http://purl.obolibrary.org/obo/RO_0002000>)
2013-10-16 19:47:53,968 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0003000> <http://purl.obolibrary.org/obo/RO_0003001>)
2013-10-16 19:47:53,986 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002293> <http://purl.obolibrary.org/obo/RO_0002291>)
2013-10-16 19:47:53,988 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0002333> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>))
2013-10-16 19:47:53,990 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002286> <http://purl.obolibrary.org/obo/RO_0002258>)
2013-10-16 19:47:53,992 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002257> <http://purl.obolibrary.org/obo/RO_0002256>)
2013-10-16 19:47:54,000 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002229> <http://purl.obolibrary.org/obo/RO_0002230>)
2013-10-16 19:47:54,001 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002221> <http://purl.obolibrary.org/obo/RO_0002219>)
2013-10-16 19:47:54,002 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002224> <http://purl.obolibrary.org/obo/RO_0002223>)
2013-10-16 19:47:54,003 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002292> <http://purl.obolibrary.org/obo/RO_0002206>)
2013-10-16 19:47:54,003 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002255> <http://purl.obolibrary.org/obo/RO_0002254>)
2013-10-16 19:47:54,007 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002217> <http://purl.obolibrary.org/obo/RO_0002218>)
2013-10-16 19:47:54,008 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002201> <http://purl.obolibrary.org/obo/RO_0002200>)
2013-10-16 19:47:54,009 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002203> <http://purl.obolibrary.org/obo/RO_0002202>)
2013-10-16 19:47:54,009 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002205> <http://purl.obolibrary.org/obo/RO_0002204>)
2013-10-16 19:47:54,009 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002210> <http://purl.obolibrary.org/obo/RO_0002207>)
2013-10-16 19:47:54,013 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:54,021 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002353> <http://purl.obolibrary.org/obo/RO_0002234>)
2013-10-16 19:47:54,022 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/RO_0002233>)
2013-10-16 19:47:54,025 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002354> <http://purl.obolibrary.org/obo/RO_0002297>)
2013-10-16 19:47:54,028 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002335> <http://purl.obolibrary.org/obo/RO_0002212>)
2013-10-16 19:47:54,028 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002336> <http://purl.obolibrary.org/obo/RO_0002213>)
2013-10-16 19:47:54,028 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002334> <http://purl.obolibrary.org/obo/RO_0002211>)
2013-10-16 19:47:54,033 WARN  (ChangeIndexingProcessor:66) ELK does not support DisjointObjectProperties. Axiom ignored:
DisjointObjectProperties(<http://purl.obolibrary.org/obo/RO_0002378> <http://purl.obolibrary.org/obo/RO_0002382>)
2013-10-16 19:47:54,034 WARN  (ChangeIndexingProcessor:66) ELK does not support DisjointObjectProperties. Axiom ignored:
DisjointObjectProperties(<http://purl.obolibrary.org/obo/RO_0002378> <http://purl.obolibrary.org/obo/RO_0002383>)
2013-10-16 19:47:54,054 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/BFO_0000002>)
2013-10-16 19:47:54,055 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/BFO_0000003>)
2013-10-16 19:47:54,055 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002156> <http://purl.obolibrary.org/obo/RO_0002157>)
2013-10-16 19:47:54,065 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002132> <http://purl.obolibrary.org/obo/RO_0002101>)
2013-10-16 19:47:54,066 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002106> <http://purl.obolibrary.org/obo/RO_0002112>)
2013-10-16 19:47:54,066 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002110> <http://purl.obolibrary.org/obo/RO_0002102>)
2013-10-16 19:47:54,067 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002114> <http://purl.obolibrary.org/obo/RO_0002115>)
2013-10-16 19:47:54,067 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002103> <http://purl.obolibrary.org/obo/RO_0002120>)
2013-10-16 19:47:54,089 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 19:47:54,092 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002356> <http://purl.obolibrary.org/obo/CL_0000000>)
2013-10-16 19:47:54,137 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0030877> // src=null via null
2013-10-16 19:47:54,138 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0030877> <http://purl.obolibrary.org/obo/GO_0030877-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 0 Logical Axioms: 0]
2013-10-16 19:47:54,139 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 19:47:54,139 INFO  (MinimalModelGenerator:1091) Finding all nested anonymous expressions
2013-10-16 19:47:55,078 INFO  (MinimalModelGenerator:1103) TOTAL axioms in QMAP: 32304
2013-10-16 19:47:55,172 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:55,176 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:55,489 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 313 ms
2013-10-16 19:47:55,489 INFO  (LoggingStageExecutor:70) Property Saturation Initialization started
2013-10-16 19:47:55,490 INFO  (AbstractReasonerStage:179) Property Saturation Initialization using 8 workers
2013-10-16 19:47:55,490 INFO  (LoggingStageExecutor:103) Property Saturation Initialization finished in 1 ms
2013-10-16 19:47:55,491 INFO  (LoggingStageExecutor:70) Reflexive Property Computation started
2013-10-16 19:47:55,494 INFO  (AbstractReasonerStage:179) Reflexive Property Computation using 8 workers
2013-10-16 19:47:55,495 INFO  (LoggingStageExecutor:103) Reflexive Property Computation finished in 4 ms
2013-10-16 19:47:55,495 INFO  (LoggingStageExecutor:70) Object Property Hierarchy and Composition Computation started
2013-10-16 19:47:55,497 INFO  (AbstractReasonerStage:179) Object Property Hierarchy and Composition Computation using 8 workers
2013-10-16 19:47:55,560 INFO  (LoggingStageExecutor:103) Object Property Hierarchy and Composition Computation finished in 64 ms
2013-10-16 19:47:55,560 INFO  (LoggingStageExecutor:70) Context Initialization started
2013-10-16 19:47:55,561 INFO  (AbstractReasonerStage:179) Context Initialization using 8 workers
2013-10-16 19:47:55,561 INFO  (LoggingStageExecutor:103) Context Initialization finished in 0 ms
2013-10-16 19:47:55,564 INFO  (LoggingStageExecutor:70) Consistency Checking started
2013-10-16 19:47:55,569 INFO  (AbstractReasonerStage:179) Consistency Checking using 8 workers
2013-10-16 19:47:55,632 INFO  (LoggingStageExecutor:103) Consistency Checking finished in 67 ms
2013-10-16 19:47:55,632 INFO  (LoggingStageExecutor:70) Class Taxonomy Computation started
2013-10-16 19:47:55,638 INFO  (AbstractReasonerStage:179) Class Taxonomy Computation using 8 workers
2013-10-16 19:47:58,215 INFO  (LoggingStageExecutor:103) Class Taxonomy Computation finished in 2582 ms
2013-10-16 19:47:58,216 INFO  (LoggingStageExecutor:70) Instance Taxonomy Computation started
2013-10-16 19:47:58,220 INFO  (InstanceTaxonomyComputationStage:71) Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:58,220 INFO  (AbstractReasonerStage:179) Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:58,239 INFO  (LoggingStageExecutor:103) Instance Taxonomy Computation finished in 22 ms
2013-10-16 19:47:58,242 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0030877-proto> is 24
2013-10-16 19:47:58,242 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0030877-proto> is 6
2013-10-16 19:47:58,243 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005737>)
2013-10-16 19:47:58,245 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,245 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,246 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,248 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,249 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,253 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 5 ms
2013-10-16 19:47:58,254 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,255 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,261 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:47:58,261 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,262 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,267 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 5 ms
2013-10-16 19:47:58,267 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,269 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,274 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 6 ms
2013-10-16 19:47:58,274 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,274 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,303 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 29 ms
2013-10-16 19:47:58,303 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,303 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,307 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 3 ms
2013-10-16 19:47:58,307 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,309 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,310 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 3 ms
2013-10-16 19:47:58,311 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,311 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,328 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 17 ms
2013-10-16 19:47:58,328 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,329 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,333 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 4 ms
2013-10-16 19:47:58,333 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,333 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,334 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,334 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,334 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,339 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 4 ms
2013-10-16 19:47:58,339 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,339 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,339 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,340 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,340 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,344 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 4 ms
2013-10-16 19:47:58,344 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,344 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,348 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 3 ms
2013-10-16 19:47:58,348 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,348 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,348 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,349 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,349 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,352 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 3 ms
2013-10-16 19:47:58,353 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,353 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,353 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,353 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,353 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,371 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 17 ms
2013-10-16 19:47:58,371 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,371 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,375 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 4 ms
2013-10-16 19:47:58,376 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,376 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,376 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,377 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,377 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,377 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,377 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,377 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,398 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 20 ms
2013-10-16 19:47:58,410 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,410 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,414 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 3 ms
2013-10-16 19:47:58,414 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,414 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,421 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 7 ms
2013-10-16 19:47:58,421 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,421 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,422 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,422 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,422 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,424 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 2 ms
2013-10-16 19:47:58,424 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,425 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,425 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,425 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,425 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,441 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:47:58,441 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,441 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,444 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 3 ms
2013-10-16 19:47:58,444 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0005737> // src=<http://purl.obolibrary.org/obo/GO_0030877-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 19:47:58,445 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0005737> <http://purl.obolibrary.org/obo/GO_0005737-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 1 Logical Axioms: 1]
2013-10-16 19:47:58,445 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0005737-proto>
2013-10-16 19:47:58,446 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005737-proto> <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 19:47:58,446 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005737-proto> <http://purl.obolibrary.org/obo/GO_0030877-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0030877-proto> <http://purl.obolibrary.org/obo/GO_0005737-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 2 Logical Axioms: 2]
2013-10-16 19:47:58,446 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,446 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,456 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 10 ms
2013-10-16 19:47:58,456 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,457 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,459 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 2 ms
2013-10-16 19:47:58,460 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,460 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,460 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,460 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,460 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,462 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 1 ms
2013-10-16 19:47:58,462 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,463 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,466 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 3 ms
2013-10-16 19:47:58,466 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,466 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,485 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 19 ms
2013-10-16 19:47:58,485 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,486 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,489 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 3 ms
2013-10-16 19:47:58,489 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,489 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,490 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,490 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,490 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,509 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 18 ms
2013-10-16 19:47:58,509 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,509 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,512 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 3 ms
2013-10-16 19:47:58,513 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:58,513 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:58,517 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 4 ms
2013-10-16 19:47:58,517 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0005737-proto> is 14
2013-10-16 19:47:58,518 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0005737-proto> is 2
2013-10-16 19:47:58,518 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005622>)
2013-10-16 19:47:58,518 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,518 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,518 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,519 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,519 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,521 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 1 ms
2013-10-16 19:47:58,521 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,521 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,521 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,521 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,521 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,524 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 3 ms
2013-10-16 19:47:58,525 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,525 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,529 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 3 ms
2013-10-16 19:47:58,529 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,529 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,547 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 17 ms
2013-10-16 19:47:58,547 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,547 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,549 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 1 ms
2013-10-16 19:47:58,549 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,549 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,550 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,550 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,550 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,566 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:47:58,566 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,566 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,571 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 4 ms
2013-10-16 19:47:58,571 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,571 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,572 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,572 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,572 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,575 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 2 ms
2013-10-16 19:47:58,575 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,575 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,575 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,576 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,576 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,578 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 1 ms
2013-10-16 19:47:58,578 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,578 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,580 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 1 ms
2013-10-16 19:47:58,580 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,580 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,580 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,580 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,580 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,581 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,581 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,581 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,581 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,581 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,581 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,596 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,596 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,596 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,596 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,597 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,597 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,597 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,597 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,597 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,597 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,598 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,598 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,612 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 14 ms
2013-10-16 19:47:58,624 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,624 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,625 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,625 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,625 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,625 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,626 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,626 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,626 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,626 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,626 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,626 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,626 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,627 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,627 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,627 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,627 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,642 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,642 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,642 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,642 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,642 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0005622> // src=<http://purl.obolibrary.org/obo/GO_0005737-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 19:47:58,642 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0005622> <http://purl.obolibrary.org/obo/GO_0005622-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 4 Logical Axioms: 4]
2013-10-16 19:47:58,643 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0005622-proto>
2013-10-16 19:47:58,643 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0005737-proto>
2013-10-16 19:47:58,643 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005737-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0005737-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 5 Logical Axioms: 5]
2013-10-16 19:47:58,643 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,643 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,652 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:47:58,652 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,653 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,653 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,653 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,653 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,653 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,653 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,654 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,654 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,654 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,654 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,654 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,654 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,654 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,665 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 10 ms
2013-10-16 19:47:58,665 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,665 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,665 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,665 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,666 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,666 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,666 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,666 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,681 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,681 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,681 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,681 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,681 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:58,682 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:58,682 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:58,682 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0005622-proto> is 12
2013-10-16 19:47:58,682 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0005622-proto> is 1
2013-10-16 19:47:58,683 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005623>)
2013-10-16 19:47:58,683 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,683 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,683 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,683 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,684 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,684 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,684 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,684 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,685 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,685 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,685 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,685 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,685 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,685 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,686 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,686 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,686 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,710 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 24 ms
2013-10-16 19:47:58,711 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,711 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,711 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,711 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,711 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,711 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,712 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,712 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,727 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,727 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,727 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,727 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,727 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,727 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,728 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,728 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,728 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,729 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,729 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,729 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,729 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,729 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,729 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,729 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,729 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,730 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,730 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,730 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,730 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,730 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,731 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,731 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,731 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,731 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,731 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,731 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,731 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,731 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,748 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:47:58,749 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,749 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,749 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,749 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,749 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,749 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,749 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,750 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,750 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,750 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,750 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,758 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 7 ms
2013-10-16 19:47:58,769 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,770 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,770 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,770 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,770 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,770 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,770 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,770 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,771 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,771 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,771 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,771 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,771 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,771 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,771 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,772 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,772 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,786 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,787 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,787 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,787 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,787 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0005623> // src=<http://purl.obolibrary.org/obo/GO_0005622-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 19:47:58,787 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0005623> <http://purl.obolibrary.org/obo/GO_0005623-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 7 Logical Axioms: 7]
2013-10-16 19:47:58,787 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0005623-proto>
2013-10-16 19:47:58,788 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>
2013-10-16 19:47:58,788 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0005623-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 8 Logical Axioms: 8]
2013-10-16 19:47:58,788 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,788 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,797 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:47:58,797 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,797 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,797 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,797 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,797 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,798 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,798 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,798 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,798 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,798 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,798 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,799 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,799 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,799 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,807 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 8 ms
2013-10-16 19:47:58,808 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,808 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,808 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,808 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,808 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,809 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,809 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,809 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,823 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,823 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,824 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,824 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,824 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:58,824 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:58,824 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:58,824 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0005623-proto> is 5
2013-10-16 19:47:58,825 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0005623-proto> is 1
2013-10-16 19:47:58,825 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/NCBITaxon_131567>)
2013-10-16 19:47:58,825 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,825 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,825 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>)))
2013-10-16 19:47:58,825 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,825 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,825 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,826 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,826 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,826 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,826 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,826 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,826 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,826 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,827 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,827 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,827 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,827 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,827 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,827 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,827 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,827 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,828 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,828 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,828 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,828 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,828 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,828 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,842 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,842 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,843 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,843 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,843 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,843 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,843 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>)))
2013-10-16 19:47:58,843 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>)))
2013-10-16 19:47:58,844 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,844 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,844 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,844 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,844 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,844 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,844 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,844 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,845 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,845 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,845 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,845 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,845 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,845 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,845 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,845 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,846 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,846 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,846 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,846 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,846 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,846 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,846 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,846 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,861 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,861 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,861 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,861 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,861 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,861 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,862 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>)))
2013-10-16 19:47:58,862 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,862 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,862 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,862 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,862 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,862 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,862 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,874 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,874 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,874 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,874 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,874 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,875 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,875 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,875 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,875 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,875 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,875 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,876 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,876 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,876 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,876 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,876 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,876 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,891 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,891 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,891 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,891 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,892 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/NCBITaxon_131567> // src=<http://purl.obolibrary.org/obo/GO_0005623-proto> via <http://purl.obolibrary.org/obo/RO_0002160>
2013-10-16 19:47:58,892 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/NCBITaxon_131567> <http://purl.obolibrary.org/obo/NCBITaxon_131567-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 10 Logical Axioms: 10]
2013-10-16 19:47:58,892 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/NCBITaxon_131567-proto>
2013-10-16 19:47:58,892 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/NCBITaxon_131567-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 11 Logical Axioms: 11]
2013-10-16 19:47:58,892 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,892 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,902 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 10 ms
2013-10-16 19:47:58,903 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,903 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,903 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,903 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,903 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,903 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,904 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,904 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,904 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,904 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,904 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,904 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,904 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,904 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,913 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 8 ms
2013-10-16 19:47:58,913 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,913 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,913 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,913 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,913 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,915 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 1 ms
2013-10-16 19:47:58,915 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,915 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,930 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,930 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,930 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,930 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,930 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:58,930 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:58,931 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:58,931 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/NCBITaxon_131567-proto> is 3
2013-10-16 19:47:58,931 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/NCBITaxon_131567-proto> is 0
2013-10-16 19:47:58,931 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))))
2013-10-16 19:47:58,931 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,931 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,932 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>))> ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>)))
2013-10-16 19:47:58,932 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,932 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,932 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,932 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,932 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,932 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,932 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,933 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,933 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,933 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,933 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,933 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,933 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,933 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,933 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,934 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,934 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,934 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,934 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,934 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,934 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,934 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,934 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,935 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,949 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,949 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,949 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,949 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,950 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,950 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,950 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>))> ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>)))
2013-10-16 19:47:58,950 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>))> ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>)))
2013-10-16 19:47:58,950 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,950 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,950 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,951 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,951 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,951 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,951 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,951 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,951 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,951 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,951 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,952 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,952 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,952 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,952 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,952 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,952 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,952 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,952 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,953 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,953 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,953 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,953 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,953 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,967 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,967 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,968 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,968 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,968 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,968 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:58,968 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>))> ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>)))
2013-10-16 19:47:58,968 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:58,968 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:58,969 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:58,969 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:58,969 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:58,969 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:58,969 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:58,980 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:58,981 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:58,981 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:58,981 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:58,981 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:58,981 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:58,981 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:58,981 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:58,982 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:58,982 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:58,982 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:58,982 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:58,982 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:58,982 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:58,982 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:58,983 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:58,983 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:58,997 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:58,998 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:58,998 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:58,998 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:58,998 INFO  (MinimalModelGenerator:389) GNI type:ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) // src=<http://purl.obolibrary.org/obo/GO_0030877-proto> via <http://purl.obolibrary.org/obo/RO_0002215>
2013-10-16 19:47:58,998 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0004842> <http://purl.obolibrary.org/obo/GO_0004842-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 12 Logical Axioms: 12]
2013-10-16 19:47:58,998 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0004842-proto>
2013-10-16 19:47:58,999 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0030877-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 13 Logical Axioms: 13]
2013-10-16 19:47:58,999 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:58,999 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,008 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:47:59,008 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,008 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,008 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,008 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,008 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,008 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,009 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,009 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,009 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,009 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,009 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,009 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,009 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,009 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,018 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 8 ms
2013-10-16 19:47:59,018 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,018 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,018 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,018 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,018 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,018 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,019 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,019 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,033 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,034 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,034 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,034 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,034 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:59,034 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:59,034 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:59,035 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0004842-proto> is 11
2013-10-16 19:47:59,035 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0004842-proto> is 3
2013-10-16 19:47:59,035 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0016567>)
2013-10-16 19:47:59,035 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,035 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,035 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,035 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,035 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,036 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,036 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,036 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,036 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,036 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,036 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,036 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,037 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,037 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,037 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,037 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,037 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,045 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 19:47:59,045 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,045 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,045 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,045 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,045 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,046 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,046 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,046 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,060 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,060 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,060 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,060 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,061 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,061 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,061 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,061 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,061 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,061 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,061 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,062 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,062 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,062 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,062 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,062 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,062 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,062 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,063 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,063 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,063 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,063 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,063 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,063 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,063 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,063 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,063 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,064 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,064 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,064 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,078 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,078 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,079 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,079 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,079 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,079 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,079 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,079 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,079 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,080 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,080 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,080 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,088 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 8 ms
2013-10-16 19:47:59,100 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,100 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,100 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,100 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,100 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,101 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,101 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,101 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,101 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,101 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,101 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,101 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,102 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,102 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,102 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,102 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,102 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,117 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,117 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,117 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,117 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,118 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0016567> // src=<http://purl.obolibrary.org/obo/GO_0004842-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 19:47:59,118 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0016567> <http://purl.obolibrary.org/obo/GO_0016567-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 14 Logical Axioms: 14]
2013-10-16 19:47:59,118 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0016567-proto>
2013-10-16 19:47:59,118 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0016567-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>
2013-10-16 19:47:59,118 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0016567-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0004842-proto> <http://purl.obolibrary.org/obo/GO_0016567-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 15 Logical Axioms: 15]
2013-10-16 19:47:59,118 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,119 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,127 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:47:59,128 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,128 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,128 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,128 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,128 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,128 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,129 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,129 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,129 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,129 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,129 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,129 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,129 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,129 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,137 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 19:47:59,137 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,137 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,138 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,138 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,138 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,138 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,138 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,138 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,153 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,153 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,153 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,153 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,153 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:59,154 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:59,154 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:59,154 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0016567-proto> is 22
2013-10-16 19:47:59,154 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0016567-proto> is 3
2013-10-16 19:47:59,155 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/CHEBI_36080>)
2013-10-16 19:47:59,155 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,155 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,155 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,155 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,155 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,155 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,156 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,156 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,156 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,156 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,156 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,156 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,156 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,156 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,157 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,157 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,157 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,164 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 19:47:59,164 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,164 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,165 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,165 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,165 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,165 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,165 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,165 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,180 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,180 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,180 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,180 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,180 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,180 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,181 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,181 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,181 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,181 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,181 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,181 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,181 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,181 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,182 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,182 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,182 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,182 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,182 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,182 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,182 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,183 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,183 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,183 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,183 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,183 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,183 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,183 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,183 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,183 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,198 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,198 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,198 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,198 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,198 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,198 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,199 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,199 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,199 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,199 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,199 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,199 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,206 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:47:59,217 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,217 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,218 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,218 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,218 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,218 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,219 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,219 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,219 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,219 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,219 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,219 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,219 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,220 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,220 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,220 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,227 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,242 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 21 ms
2013-10-16 19:47:59,242 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,242 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,242 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,243 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_36080> // src=<http://purl.obolibrary.org/obo/GO_0016567-proto> via <http://purl.obolibrary.org/obo/RO_0000057>
2013-10-16 19:47:59,243 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_36080> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 17 Logical Axioms: 17]
2013-10-16 19:47:59,243 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:47:59,243 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0016567-proto>
2013-10-16 19:47:59,243 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0016567-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0016567-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 18 Logical Axioms: 18]
2013-10-16 19:47:59,243 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,244 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,252 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:47:59,252 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,253 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,253 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,253 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,253 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,253 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,253 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,253 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,254 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,254 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,254 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,254 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,254 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,254 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,261 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:47:59,261 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,261 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,262 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,262 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,262 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,262 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,262 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,262 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,277 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,277 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,277 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,277 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,277 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:59,277 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:59,278 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:59,279 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_36080-proto> is 35
2013-10-16 19:47:59,279 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_36080-proto> is 18
2013-10-16 19:47:59,279 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541>)
2013-10-16 19:47:59,280 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,280 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,280 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,280 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,280 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,280 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,280 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,280 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,281 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,281 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,281 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,281 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,281 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,281 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,281 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,282 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,282 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,288 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:47:59,288 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,288 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,289 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,289 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,289 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,289 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,289 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,289 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,304 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,304 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,304 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,304 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,305 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,305 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,305 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,305 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,305 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,305 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,305 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,305 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,306 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,306 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,306 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,306 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,306 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,306 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,306 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,307 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,307 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,307 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,307 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,307 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,307 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,307 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,307 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,307 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,308 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,308 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,322 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,322 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,322 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,322 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,322 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,322 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,323 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,323 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,323 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,323 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,323 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,323 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,329 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:47:59,340 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,341 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,342 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,342 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,342 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,342 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,342 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,342 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,342 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,343 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,343 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,343 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,343 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,343 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,343 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,343 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,343 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,358 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,358 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,358 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,358 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,359 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16541> // src=<http://purl.obolibrary.org/obo/CHEBI_36080-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:47:59,359 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_16541> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 20 Logical Axioms: 20]
2013-10-16 19:47:59,359 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:47:59,359 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:47:59,359 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 21 Logical Axioms: 21]
2013-10-16 19:47:59,360 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,360 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,368 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:47:59,369 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,369 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,369 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,369 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,369 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,369 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,370 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,370 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,370 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,370 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,370 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,370 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,370 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,370 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,377 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:47:59,377 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,377 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,378 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,378 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,378 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,378 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,378 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,378 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,393 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,393 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,393 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,393 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,393 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:59,394 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:59,394 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:59,395 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_16541-proto> is 48
2013-10-16 19:47:59,395 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_16541-proto> is 19
2013-10-16 19:47:59,395 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16670>)
2013-10-16 19:47:59,396 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,396 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,396 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:47:59,396 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,396 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,396 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,396 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,396 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,396 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,397 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,397 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,397 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,397 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,397 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,397 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,398 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,398 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,398 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,398 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,398 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,398 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,398 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,399 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,399 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,399 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,399 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,399 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,413 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,413 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,414 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,414 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,414 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,414 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,414 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:47:59,414 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:47:59,414 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,415 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,415 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,415 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,415 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,415 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,415 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,416 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,416 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,416 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,416 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,416 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,416 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,416 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,416 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,417 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,417 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,417 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,417 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,417 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,417 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,417 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,417 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,418 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,432 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,432 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,432 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,432 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,432 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,432 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,433 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:47:59,433 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,433 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,433 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,433 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,433 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,433 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,434 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,445 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,445 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,445 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,445 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,445 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,446 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,446 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,446 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,446 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,446 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,446 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,446 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,447 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,447 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,447 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,447 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,447 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,462 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,462 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,462 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,462 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,463 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16670> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 19:47:59,463 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_16670> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 23 Logical Axioms: 23]
2013-10-16 19:47:59,463 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 19:47:59,463 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 24 Logical Axioms: 24]
2013-10-16 19:47:59,463 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,463 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,472 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:47:59,472 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,472 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,472 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,473 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,473 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,473 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,473 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,473 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,473 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,473 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,474 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,474 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,474 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,474 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,481 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:47:59,481 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,481 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,481 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,482 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,482 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,482 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,482 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,482 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,496 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,496 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,496 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,497 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,497 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:59,497 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:59,497 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:59,498 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_16670-proto> is 43
2013-10-16 19:47:59,498 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_16670-proto> is 18
2013-10-16 19:47:59,498 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16670>)
2013-10-16 19:47:59,499 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,499 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,499 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:47:59,499 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,499 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,499 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,499 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,499 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,500 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,500 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,500 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,500 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,500 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,500 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,500 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,501 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,501 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,501 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,501 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,501 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,501 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,501 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,501 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,501 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,502 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,502 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,502 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,516 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,517 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,517 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,517 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,517 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,517 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,517 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:47:59,517 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:47:59,518 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,518 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,518 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,518 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,518 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,518 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,518 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,519 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,519 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,519 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,519 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,519 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,519 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,520 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,520 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,520 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,520 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,520 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,520 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,520 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,520 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,521 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,521 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,521 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,535 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,535 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,535 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,535 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,536 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,536 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,536 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:47:59,536 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,536 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,536 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,536 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,536 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,536 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,537 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,549 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,549 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,549 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,549 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,549 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,550 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,550 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,550 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,550 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,550 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,550 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,550 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,550 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,550 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,551 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,551 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,551 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,566 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,566 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,566 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,566 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,566 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16670> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 19:47:59,567 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 25 Logical Axioms: 25]
2013-10-16 19:47:59,567 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 19:47:59,567 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,567 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,576 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:47:59,576 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:47:59,576 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,576 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,576 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,576 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,577 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,577 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,577 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,577 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,577 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,577 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,577 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,578 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,578 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,578 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,578 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,578 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,578 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,578 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,579 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,579 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,579 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,579 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,579 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,593 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,594 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,594 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,594 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,594 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,594 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,594 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:47:59,594 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:47:59,594 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,595 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,595 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,595 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,595 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,595 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,595 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,595 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,596 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,596 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,596 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,596 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,596 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,596 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,596 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,597 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,597 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,597 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,597 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,597 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,597 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,597 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,597 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,597 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,612 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,612 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,612 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,612 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,612 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,612 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,613 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:47:59,613 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,613 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,613 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,613 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,613 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,613 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,613 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,625 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,625 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,625 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,625 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,625 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,626 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,626 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,626 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,626 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,626 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,626 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,626 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,626 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,627 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,627 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,627 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,627 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,642 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:47:59,642 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,642 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,642 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,643 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/chebi#has_parent_hydride>
2013-10-16 19:47:59,643 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_16134> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 26 Logical Axioms: 26]
2013-10-16 19:47:59,643 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 19:47:59,643 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 27 Logical Axioms: 27]
2013-10-16 19:47:59,643 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,643 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,652 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:47:59,652 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,652 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,652 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,652 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,653 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,653 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,653 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,653 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,653 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,653 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,654 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,654 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,654 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,654 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,661 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 19:47:59,661 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,661 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,662 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,662 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,662 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,662 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,662 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,663 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,677 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,677 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,677 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,677 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,678 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:59,678 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:59,678 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:59,679 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_16134-proto> is 42
2013-10-16 19:47:59,679 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_16134-proto> is 18
2013-10-16 19:47:59,679 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_59740>)
2013-10-16 19:47:59,680 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,680 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,680 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:47:59,680 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,680 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,680 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,680 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,680 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,681 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,681 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,681 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,681 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,681 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,681 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,682 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,682 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,682 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,682 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,682 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,682 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,682 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,683 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,683 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,683 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,683 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,683 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,684 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,700 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:47:59,700 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,700 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,700 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,700 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,700 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,701 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:47:59,701 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:47:59,701 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,701 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,701 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,701 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,701 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,701 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,702 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,702 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,702 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,702 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,702 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,702 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,702 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,703 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,703 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,703 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,703 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,703 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,703 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,703 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,703 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,703 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,704 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,704 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,718 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,718 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,718 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,718 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,719 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,719 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,719 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:47:59,719 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,719 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,719 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,724 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 4 ms
2013-10-16 19:47:59,724 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,724 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,725 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,736 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,736 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,736 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,736 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,736 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,737 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,737 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,737 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,737 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,737 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,737 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,737 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,738 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,738 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,738 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,738 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,738 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,753 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,753 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,753 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,753 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,753 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_59740> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 19:47:59,754 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_59740> <http://purl.obolibrary.org/obo/CHEBI_59740-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 28 Logical Axioms: 28]
2013-10-16 19:47:59,754 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_59740-proto>
2013-10-16 19:47:59,754 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_59740-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 29 Logical Axioms: 29]
2013-10-16 19:47:59,754 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,754 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,763 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:47:59,763 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,763 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,763 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,764 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,764 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,764 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,764 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,764 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,764 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,764 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,765 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,765 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,765 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,765 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,771 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:47:59,772 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,772 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,772 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,772 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,772 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,772 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,772 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,773 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,787 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,787 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,787 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,787 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,787 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:59,787 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:59,788 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:59,788 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_59740-proto> is 9
2013-10-16 19:47:59,788 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_59740-proto> is 0
2013-10-16 19:47:59,788 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_26619>)
2013-10-16 19:47:59,788 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,788 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,789 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:47:59,789 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,789 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,789 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,789 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,789 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,789 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,790 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,790 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,790 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,790 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,790 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,790 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,790 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,791 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,791 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,791 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,791 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,791 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,791 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,791 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,791 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,792 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,792 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,792 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,808 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:47:59,809 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,809 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,809 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,809 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,809 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,809 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:47:59,809 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:47:59,810 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,810 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,810 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,810 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,810 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,810 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,810 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,810 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,811 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,811 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,811 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,811 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,811 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,811 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,811 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,812 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,812 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,812 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,812 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,812 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,812 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,812 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,812 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,813 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,827 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,827 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,827 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,828 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,828 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,828 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,828 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:47:59,828 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,828 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,828 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,828 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,829 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,829 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,829 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,840 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,840 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,841 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,841 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,841 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,841 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,841 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,841 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,841 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,842 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,842 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,842 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,842 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,842 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,842 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,842 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,842 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,857 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,857 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,857 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,858 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,858 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_26619> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 19:47:59,858 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_26619> <http://purl.obolibrary.org/obo/CHEBI_26619-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 30 Logical Axioms: 30]
2013-10-16 19:47:59,858 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_26619-proto>
2013-10-16 19:47:59,858 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_26619-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 31 Logical Axioms: 31]
2013-10-16 19:47:59,858 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,858 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,867 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:47:59,867 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,867 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,868 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,868 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,868 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,868 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,868 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,868 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,869 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,869 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,869 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,869 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,869 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,869 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,876 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:47:59,876 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,876 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,876 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,876 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,876 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,877 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,877 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,877 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,891 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,891 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,891 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,892 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,892 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:47:59,892 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:47:59,892 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:47:59,892 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_26619-proto> is 6
2013-10-16 19:47:59,892 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_26619-proto> is 0
2013-10-16 19:47:59,892 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:47:59,893 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,893 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,893 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,893 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,893 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,893 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,893 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,894 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,894 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,894 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,894 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,894 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,894 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,894 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,895 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,895 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,895 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,901 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:47:59,901 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,901 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,902 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,902 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,902 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,902 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,902 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,902 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,917 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,917 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,917 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,917 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,917 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,918 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,918 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,918 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,918 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,918 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,918 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,918 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,919 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,919 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,919 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,919 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,919 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,919 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,919 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,919 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,920 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,920 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,920 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,920 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,920 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,920 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,920 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,920 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,921 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,921 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,935 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,935 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,935 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,935 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,935 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,935 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,936 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:47:59,936 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,936 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,936 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,936 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,936 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,942 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:47:59,954 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,955 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,955 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,955 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,955 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,955 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,956 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,956 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,956 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:47:59,956 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,956 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,956 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,956 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,956 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,957 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,957 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,957 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:47:59,972 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:47:59,972 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:47:59,972 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:47:59,972 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:47:59,972 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:47:59,972 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_25555> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 32 Logical Axioms: 32]
2013-10-16 19:47:59,973 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 19:47:59,973 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 19:47:59,973 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 33 Logical Axioms: 33]
2013-10-16 19:47:59,973 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:47:59,973 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:47:59,982 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:47:59,982 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:47:59,982 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:47:59,983 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:47:59,983 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:47:59,983 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:47:59,983 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:47:59,983 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:47:59,983 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:47:59,984 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:47:59,984 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:47:59,984 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:47:59,984 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:47:59,984 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:47:59,984 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:47:59,991 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:47:59,991 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:47:59,991 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:47:59,991 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:47:59,991 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:47:59,991 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:47:59,992 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:47:59,992 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:47:59,992 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,007 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,007 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,007 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,007 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,007 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:00,008 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:00,008 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:00,008 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_25555-proto> is 13
2013-10-16 19:48:00,009 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_25555-proto> is 5
2013-10-16 19:48:00,009 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33937>)
2013-10-16 19:48:00,009 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,009 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,009 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>)))
2013-10-16 19:48:00,009 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,009 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,010 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,010 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,010 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,010 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,010 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,010 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,010 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,011 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,011 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,011 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,011 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,011 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,011 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,011 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,011 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,012 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,012 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,012 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,012 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,012 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,012 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,012 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,027 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,027 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,027 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,027 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,027 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,027 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,028 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>)))
2013-10-16 19:48:00,028 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>)))
2013-10-16 19:48:00,028 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,028 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,028 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,028 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,028 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,028 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,029 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,029 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,029 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,029 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,029 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,029 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,030 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,030 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,030 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,030 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,030 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,030 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,030 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,030 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,031 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,031 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,031 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,031 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,045 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,045 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,045 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,046 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,046 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,046 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,046 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>)))
2013-10-16 19:48:00,046 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,046 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,046 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,047 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,047 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,047 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,047 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,058 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,059 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,059 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,059 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,059 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,059 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,059 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,060 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,060 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,060 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,060 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,060 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,060 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,060 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,060 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,061 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,061 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,075 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,075 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,076 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,076 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,076 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33937> // src=<http://purl.obolibrary.org/obo/CHEBI_25555-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 19:48:00,076 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33937> <http://purl.obolibrary.org/obo/CHEBI_33937-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 35 Logical Axioms: 35]
2013-10-16 19:48:00,076 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33937-proto>
2013-10-16 19:48:00,076 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33937-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 36 Logical Axioms: 36]
2013-10-16 19:48:00,077 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,077 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,086 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:00,086 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,086 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,086 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,086 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,086 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,086 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,087 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,087 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,087 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,087 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,087 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,087 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,087 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,088 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,094 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,094 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,094 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,095 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,095 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,095 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,095 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,095 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,095 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,109 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,110 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,110 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,110 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,110 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:00,110 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:00,110 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:00,111 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33937-proto> is 6
2013-10-16 19:48:00,111 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33937-proto> is 0
2013-10-16 19:48:00,111 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252>)
2013-10-16 19:48:00,111 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,111 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,111 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,111 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,111 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,112 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,112 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,112 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,112 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,112 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,112 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,113 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,113 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,113 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,113 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,113 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,113 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,120 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,120 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,120 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,120 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,120 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,120 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,121 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,121 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,121 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,135 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,135 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,136 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,136 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,136 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,136 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,136 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,136 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,137 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,137 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,137 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,137 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,137 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,137 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,137 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,138 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,138 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,138 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,138 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,138 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,138 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,138 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,139 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,139 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,139 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,139 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,139 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,139 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,139 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,139 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,154 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,154 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,154 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,154 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,154 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,154 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,155 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,155 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,155 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,155 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,155 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,155 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,162 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:00,173 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,173 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,174 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,174 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,174 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,174 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,174 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,174 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,175 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,175 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,175 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,175 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,175 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,175 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,175 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,175 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,176 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,190 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,190 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,191 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,191 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,191 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33252> // src=<http://purl.obolibrary.org/obo/CHEBI_25555-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:00,191 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33252> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 37 Logical Axioms: 37]
2013-10-16 19:48:00,191 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:00,191 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 19:48:00,192 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 38 Logical Axioms: 38]
2013-10-16 19:48:00,192 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,192 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,201 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:00,201 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,201 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,201 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,201 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,202 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,202 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,202 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,202 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,202 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,202 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,202 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,203 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,207 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,208 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,214 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,214 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,214 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,215 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,215 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,215 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,215 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,215 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,215 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,230 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,230 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,230 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,230 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,230 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:00,230 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:00,231 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:00,231 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33252-proto> is 5
2013-10-16 19:48:00,231 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33252-proto> is 1
2013-10-16 19:48:00,231 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33253>)
2013-10-16 19:48:00,231 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,231 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,232 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,232 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,232 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,232 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,232 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,232 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,232 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,233 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,233 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,233 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,233 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,233 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,233 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,234 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,234 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,240 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,240 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,240 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,240 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,240 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,240 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,241 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,241 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,241 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,255 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,255 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,256 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,256 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,256 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,256 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,256 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,256 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,256 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,257 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,257 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,257 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,257 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,257 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,257 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,258 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,258 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,258 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,258 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,258 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,258 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,258 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,258 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,259 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,259 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,259 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,259 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,259 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,259 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,259 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,274 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,274 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,274 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,274 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,274 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,274 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,275 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,275 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,275 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,275 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,275 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,275 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,281 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:00,293 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,293 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,293 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,293 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,294 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,294 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,294 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,294 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,294 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,294 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,294 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,295 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,295 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,295 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,295 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,295 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,295 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,310 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,310 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,310 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,310 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,311 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33253> // src=<http://purl.obolibrary.org/obo/CHEBI_33252-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:00,311 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33253> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 40 Logical Axioms: 40]
2013-10-16 19:48:00,311 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:00,311 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:00,311 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 41 Logical Axioms: 41]
2013-10-16 19:48:00,311 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,312 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,320 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:00,321 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,321 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,321 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,321 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,321 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,321 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,322 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,322 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,322 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,322 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,322 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,322 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,322 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,322 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,329 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,329 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,329 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,330 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,330 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,330 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,331 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,331 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,331 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,345 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,346 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,346 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,346 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,346 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:00,346 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:00,346 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:00,347 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33253-proto> is 8
2013-10-16 19:48:00,347 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33253-proto> is 0
2013-10-16 19:48:00,347 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_10545>)
2013-10-16 19:48:00,347 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,347 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,347 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,347 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,347 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,348 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,348 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,348 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,348 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,348 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,348 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,349 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,349 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,349 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,349 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,349 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,349 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,355 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,356 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,356 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,356 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,356 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,356 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,356 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,356 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,357 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,371 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,371 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,371 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,371 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,371 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,372 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,372 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,372 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,372 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,372 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,372 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,372 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,373 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,373 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,373 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,373 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,373 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,373 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,373 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,373 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,374 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,374 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,374 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,374 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,374 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,374 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,374 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,375 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,375 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,375 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,389 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,389 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,389 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,390 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,390 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,390 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,390 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,390 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,390 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,391 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,391 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,391 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,397 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:00,408 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,409 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,409 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,409 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,409 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,409 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,409 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,410 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,410 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,410 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,410 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,410 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,410 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,410 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,410 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,411 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,411 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,425 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,426 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,426 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,426 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,426 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_10545> // src=<http://purl.obolibrary.org/obo/CHEBI_25555-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:00,426 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_10545> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 43 Logical Axioms: 43]
2013-10-16 19:48:00,426 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:00,427 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 19:48:00,427 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 44 Logical Axioms: 44]
2013-10-16 19:48:00,427 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,427 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,436 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:00,436 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,436 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,436 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,436 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,437 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,437 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,437 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,437 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,437 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,437 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,437 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,438 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,438 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,438 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,444 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,445 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,445 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,445 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,445 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,445 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,445 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,445 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,445 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,460 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,460 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,460 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,460 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,460 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:00,461 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:00,461 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:00,461 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_10545-proto> is 6
2013-10-16 19:48:00,461 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_10545-proto> is 0
2013-10-16 19:48:00,461 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_29337>)
2013-10-16 19:48:00,461 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,461 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,462 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:00,462 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,462 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,462 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,462 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,462 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,462 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,463 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,463 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,463 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,463 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,463 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,463 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,464 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,464 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,464 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,464 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,464 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,464 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,465 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,465 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,465 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,465 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,465 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,465 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,479 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,480 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,480 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,480 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,480 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,480 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,480 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:00,480 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:00,481 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,481 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,481 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,481 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,481 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,481 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,481 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,481 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,481 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,482 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,482 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,482 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,482 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,482 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,482 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,483 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,483 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,483 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,483 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,483 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,483 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,483 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,483 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,483 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,498 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,498 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,498 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,498 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,498 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,498 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,499 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:00,499 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,499 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,499 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,499 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,499 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,499 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,500 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,511 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,511 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,512 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,512 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,512 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,512 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,512 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,512 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,513 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,513 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,513 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,513 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,513 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,513 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,513 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,513 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,514 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,528 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,528 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,529 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,529 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,529 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_29337> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 19:48:00,529 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_29337> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 46 Logical Axioms: 46]
2013-10-16 19:48:00,529 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 19:48:00,529 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 47 Logical Axioms: 47]
2013-10-16 19:48:00,530 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,530 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,538 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:00,538 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,539 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,539 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,539 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,539 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,539 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,539 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,539 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,540 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,540 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,540 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,540 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,540 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,540 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,547 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,547 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,547 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,548 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,548 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,548 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,548 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,548 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,548 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,563 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,563 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,563 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,563 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,563 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:00,564 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:00,564 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:00,564 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_29337-proto> is 39
2013-10-16 19:48:00,564 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_29337-proto> is 13
2013-10-16 19:48:00,565 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_29340>)
2013-10-16 19:48:00,565 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,565 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,565 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 19:48:00,565 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,565 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,566 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,566 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,566 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,566 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,566 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,566 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,566 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,567 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,567 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,567 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,567 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,567 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,567 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,568 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,568 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,568 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,568 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,568 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,568 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,568 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,568 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,568 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,583 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,583 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,583 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,583 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,583 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,583 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,584 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 19:48:00,584 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 19:48:00,584 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,584 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,584 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,584 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,584 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,584 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,585 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,585 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,585 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,585 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,585 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,585 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,585 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,585 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,586 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,586 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,586 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,586 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,586 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,586 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,586 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,586 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,587 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,587 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,601 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,601 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,601 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,601 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,602 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,602 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,602 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 19:48:00,602 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,602 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,602 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,602 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,602 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,603 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,603 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,615 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,615 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,615 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,616 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,616 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,616 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,616 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,616 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,616 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,616 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,616 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,617 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,617 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,617 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,617 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,617 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,617 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,632 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,632 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,632 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,632 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,633 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_29340> // src=<http://purl.obolibrary.org/obo/CHEBI_29337-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 19:48:00,633 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_29340> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 48 Logical Axioms: 48]
2013-10-16 19:48:00,633 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 19:48:00,633 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 49 Logical Axioms: 49]
2013-10-16 19:48:00,634 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,634 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,646 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 12 ms
2013-10-16 19:48:00,647 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,647 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,647 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,647 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,647 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,647 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,648 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,648 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,648 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,648 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,648 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,648 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,648 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,649 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,655 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,655 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,655 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,656 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,656 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,656 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,656 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,656 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,657 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,672 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:00,672 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,672 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,673 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,673 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:00,673 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:00,673 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:00,673 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_29340-proto> is 38
2013-10-16 19:48:00,674 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_29340-proto> is 12
2013-10-16 19:48:00,674 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:00,674 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,674 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,675 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,675 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,675 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,675 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,675 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,675 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,675 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,676 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,676 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,676 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,676 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,676 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,676 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,676 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,677 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,683 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,683 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,683 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,684 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,684 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,684 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,684 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,684 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,684 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,699 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,699 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,699 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,699 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,699 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,699 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,700 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,700 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,700 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,700 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,700 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,700 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,700 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,701 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,701 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,701 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,701 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,701 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,701 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,701 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,701 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,702 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,702 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,702 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,702 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,702 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,702 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,702 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,702 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,703 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,717 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,717 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,717 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,717 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,718 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,718 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,718 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,718 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,718 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,723 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 5 ms
2013-10-16 19:48:00,723 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,723 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,730 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:00,741 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,741 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,741 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,741 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,741 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,742 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,742 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,742 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,742 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,742 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,742 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,742 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,743 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,743 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,743 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,743 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,743 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,758 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:00,758 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,758 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,759 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,759 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_29340-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:00,759 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 19:48:00,759 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 50 Logical Axioms: 50]
2013-10-16 19:48:00,759 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 19:48:00,759 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,760 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,768 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:00,768 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,769 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,769 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,769 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,769 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,769 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,769 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,770 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,770 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,770 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,770 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,770 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,770 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,770 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,777 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,777 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,777 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,777 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,777 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,777 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,778 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,778 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,778 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,792 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,792 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,792 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,793 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,793 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,793 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,793 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,793 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,793 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,793 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,794 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,794 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,794 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,794 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,794 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,794 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,794 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,795 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,795 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,795 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,795 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,795 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,795 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,795 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,796 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,796 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,796 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,796 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,796 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,796 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,812 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:00,812 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,812 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,812 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,812 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,813 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,813 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,813 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,813 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,813 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,813 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,813 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,819 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:00,832 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,832 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,833 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,833 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,833 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,833 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,833 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,833 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,833 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,834 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,834 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,834 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,834 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,834 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,834 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,834 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,835 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,849 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,850 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,850 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,850 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,850 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_29340-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:00,850 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_24433> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 52 Logical Axioms: 52]
2013-10-16 19:48:00,851 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_24433-proto>
2013-10-16 19:48:00,851 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 19:48:00,851 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 53 Logical Axioms: 53]
2013-10-16 19:48:00,851 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,851 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,860 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:00,860 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,860 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,860 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,860 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,861 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,861 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,861 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,861 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,861 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,861 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,861 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,862 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,862 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,862 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,868 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,869 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,869 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,869 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,869 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,869 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,871 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 1 ms
2013-10-16 19:48:00,871 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,871 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,886 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,886 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,886 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,886 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,886 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:00,887 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:00,889 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 1 ms
2013-10-16 19:48:00,889 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_24433-proto> is 7
2013-10-16 19:48:00,889 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_24433-proto> is 4
2013-10-16 19:48:00,889 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 19:48:00,889 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,889 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,890 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,890 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,890 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,890 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,890 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,890 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,890 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,890 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,891 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,891 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,891 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,891 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,891 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,891 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,891 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,898 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,898 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,898 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,898 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,898 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,898 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,899 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,899 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,899 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,913 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,913 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,913 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,914 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,914 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,914 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,914 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,914 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,914 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,915 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,915 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,915 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,915 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,915 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,915 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,916 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,916 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,916 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,916 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,916 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,916 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,916 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,916 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,916 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,917 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,917 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,917 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,917 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,917 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,917 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,931 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,932 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,932 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,932 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,932 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,932 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,932 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:00,932 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,932 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,933 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,933 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,933 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,939 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:00,950 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,951 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,951 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,951 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,951 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,951 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,951 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,952 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,952 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:00,952 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,952 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,952 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,952 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,952 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,953 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,953 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,953 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:00,967 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:00,968 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:00,968 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:00,968 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:00,968 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_24433-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:00,968 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33250> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 55 Logical Axioms: 55]
2013-10-16 19:48:00,968 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33250-proto>
2013-10-16 19:48:00,969 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>
2013-10-16 19:48:00,969 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 56 Logical Axioms: 56]
2013-10-16 19:48:00,969 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:00,969 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:00,978 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:00,978 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:00,978 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:00,978 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:00,978 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:00,979 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:00,979 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:00,979 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:00,979 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:00,979 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:00,979 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:00,979 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:00,979 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:00,980 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:00,980 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:00,986 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:00,986 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:00,987 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:00,987 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:00,987 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:00,987 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:00,987 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:00,987 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:00,987 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,002 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,002 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,002 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,002 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,002 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:01,002 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:01,003 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:01,003 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33250-proto> is 6
2013-10-16 19:48:01,003 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33250-proto> is 3
2013-10-16 19:48:01,003 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252>)
2013-10-16 19:48:01,003 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,003 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,004 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,004 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,004 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,004 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,004 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,004 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,004 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,005 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,005 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,005 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,005 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,005 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,005 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,005 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,005 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,012 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:01,012 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,012 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,012 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,012 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,012 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,013 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,013 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,013 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,027 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,027 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,028 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,028 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,028 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,028 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,028 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,028 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,029 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,029 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,029 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,029 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,029 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,029 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,029 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,030 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,030 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,030 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,030 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,030 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,030 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,030 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,031 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,031 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,031 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,031 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,031 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,031 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,031 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,031 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,046 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,046 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,046 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,046 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,046 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,046 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,047 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,047 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,047 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,047 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,047 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,047 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,053 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:01,065 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,065 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,066 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,066 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,066 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,082 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 15 ms
2013-10-16 19:48:01,082 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,082 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,082 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,082 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,082 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,083 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,083 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,083 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,083 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,083 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,083 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,100 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:48:01,101 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,101 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,101 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,101 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33252> // src=<http://purl.obolibrary.org/obo/CHEBI_33250-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:01,101 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>
2013-10-16 19:48:01,101 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 58 Logical Axioms: 58]
2013-10-16 19:48:01,102 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_10545>)
2013-10-16 19:48:01,102 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,102 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,112 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 10 ms
2013-10-16 19:48:01,112 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,113 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,113 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,113 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,113 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,113 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,114 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,114 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,114 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,114 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,114 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,115 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,115 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,115 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,125 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 9 ms
2013-10-16 19:48:01,125 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,125 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,125 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,125 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,125 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,126 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,126 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,126 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,141 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:01,142 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,142 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,142 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,142 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,142 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,142 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,143 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,143 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,143 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,143 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,143 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,143 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,144 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,144 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,144 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,144 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,144 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,144 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,144 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,144 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,145 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,145 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,145 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,145 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,145 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,145 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,146 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,146 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,146 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,161 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,161 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,161 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,161 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,161 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,161 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,162 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,162 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,162 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,162 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,162 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,162 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,169 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:01,180 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,181 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,181 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,181 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,181 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,194 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 12 ms
2013-10-16 19:48:01,194 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,194 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,194 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,194 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,194 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,195 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,195 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,195 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,195 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,195 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,195 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,212 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 17 ms
2013-10-16 19:48:01,213 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,213 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,213 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,213 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_10545> // src=<http://purl.obolibrary.org/obo/CHEBI_33250-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:01,213 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>
2013-10-16 19:48:01,213 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 60 Logical Axioms: 60]
2013-10-16 19:48:01,214 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 19:48:01,214 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,214 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,223 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:01,223 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,223 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,223 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,223 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,224 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,224 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,224 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,224 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,224 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,224 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,224 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,225 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,225 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,225 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,232 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 19:48:01,232 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,232 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,233 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,233 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,233 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,233 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,233 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,233 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,248 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,248 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,248 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,248 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,249 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,249 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,249 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,249 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,249 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,249 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,250 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,250 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,250 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,250 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,250 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,250 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,250 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,250 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,251 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,251 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,251 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,251 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,251 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,251 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,251 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,252 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,252 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,252 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,252 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,252 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,267 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,267 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,267 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,267 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,267 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,267 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,268 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,268 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,268 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,268 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,268 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,268 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,274 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:01,286 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,287 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,287 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,287 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,287 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,287 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,287 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,288 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,288 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,288 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,288 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,288 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,288 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,288 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,289 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,289 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,289 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,304 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,304 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,304 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,304 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,305 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_29340-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:01,305 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_49637> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 62 Logical Axioms: 62]
2013-10-16 19:48:01,305 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_49637-proto>
2013-10-16 19:48:01,305 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 19:48:01,305 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 63 Logical Axioms: 63]
2013-10-16 19:48:01,305 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,305 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,315 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:01,315 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,315 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,315 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,315 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,315 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,315 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,316 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,316 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,316 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,316 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,316 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,316 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,316 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,316 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,323 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:01,323 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,323 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,323 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,323 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,324 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,324 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,324 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,324 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,338 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,339 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,339 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,339 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,339 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:01,339 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:01,339 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:01,340 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_49637-proto> is 18
2013-10-16 19:48:01,340 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_49637-proto> is 5
2013-10-16 19:48:01,340 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33937>)
2013-10-16 19:48:01,340 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,340 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,340 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>)))
2013-10-16 19:48:01,340 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,341 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,341 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,341 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,341 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,341 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,341 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,341 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,342 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,342 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,342 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,342 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,342 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,342 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,343 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,343 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,343 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,343 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,343 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,343 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,344 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,344 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,344 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,344 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,359 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,359 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,359 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,359 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,359 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,359 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,359 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>)))
2013-10-16 19:48:01,360 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>)))
2013-10-16 19:48:01,360 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,360 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,360 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,360 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,360 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,360 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,361 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,361 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,361 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,361 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,361 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,361 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,361 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,362 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,362 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,362 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,362 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,362 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,362 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,362 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,363 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,363 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,363 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,363 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,379 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:01,379 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,379 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,379 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,379 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,379 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,380 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>)))
2013-10-16 19:48:01,380 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,380 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,380 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,380 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,380 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,380 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,380 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,392 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,392 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,392 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,392 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,392 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,393 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,393 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,393 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,393 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,393 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,393 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,393 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,394 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,394 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,394 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,394 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,394 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,409 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,409 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,409 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,409 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,410 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33937> // src=<http://purl.obolibrary.org/obo/CHEBI_49637-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 19:48:01,410 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33937-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 65 Logical Axioms: 65]
2013-10-16 19:48:01,410 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252>)
2013-10-16 19:48:01,410 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,410 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,419 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:01,419 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,419 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,420 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,420 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,420 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,420 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,420 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,420 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,420 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,420 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,421 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,421 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,421 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,421 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,427 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:01,427 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,427 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,428 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,428 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,428 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,428 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,428 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,428 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,443 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,443 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,443 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,443 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,444 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,444 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,444 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,444 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,444 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,444 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,445 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,445 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,445 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,445 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,445 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,445 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,445 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,445 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,446 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,446 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,446 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,446 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,446 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,446 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,446 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,446 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,446 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,447 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,447 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,447 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,461 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,461 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,461 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,462 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,462 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,462 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,462 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,462 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,462 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,462 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,463 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,463 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,469 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:01,481 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,481 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,481 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,481 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,481 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,481 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,481 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,482 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,482 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,482 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,482 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,482 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,482 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,482 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,483 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,483 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,483 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,498 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,498 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,498 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,498 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,498 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33252> // src=<http://purl.obolibrary.org/obo/CHEBI_49637-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:01,498 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>
2013-10-16 19:48:01,499 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 66 Logical Axioms: 66]
2013-10-16 19:48:01,499 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_10545>)
2013-10-16 19:48:01,499 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,499 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,508 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:01,508 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,508 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,508 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,508 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,508 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,509 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,509 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,509 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,509 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,509 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,509 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,509 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,510 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,510 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,516 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:01,516 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,517 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,517 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,517 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,517 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,517 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,517 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,517 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,532 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,532 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,532 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,532 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,532 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,532 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,533 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,533 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,533 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,533 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,533 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,533 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,533 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,533 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,534 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,534 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,534 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,534 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,534 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,534 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,534 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,534 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,535 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,535 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,535 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,535 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,535 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,535 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,535 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,535 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,550 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,550 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,550 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,550 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,550 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,550 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,550 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,551 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,551 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,551 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,551 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,551 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,557 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:01,569 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,569 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,569 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,569 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,569 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,570 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,570 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,570 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,570 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,570 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,570 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,570 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,570 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,571 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,571 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,571 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,571 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,586 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,586 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,586 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,586 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,587 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_10545> // src=<http://purl.obolibrary.org/obo/CHEBI_49637-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:01,587 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>
2013-10-16 19:48:01,587 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 68 Logical Axioms: 68]
2013-10-16 19:48:01,587 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_29337>)
2013-10-16 19:48:01,587 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,587 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,596 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>)))
2013-10-16 19:48:01,596 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:01,596 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,596 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,597 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,597 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,597 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,597 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,597 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,597 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,597 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,598 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,598 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,598 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,598 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,598 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,598 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,598 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,598 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,599 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,599 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,599 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,599 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,599 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,599 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,613 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,614 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,614 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,614 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,614 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,614 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,614 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>)))
2013-10-16 19:48:01,614 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>)))
2013-10-16 19:48:01,614 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,615 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,615 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,615 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,615 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,615 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,615 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,615 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,615 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,616 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,616 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,616 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,616 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,616 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,616 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,616 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,616 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,616 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,617 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,617 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,617 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,617 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,617 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,617 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,632 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,632 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,632 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,632 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,632 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,632 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,632 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>)))
2013-10-16 19:48:01,632 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,633 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,633 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,633 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,633 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,633 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,633 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,644 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,645 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,645 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,645 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,645 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,645 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,645 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,646 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,646 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,646 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,646 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,646 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,646 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,646 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,646 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,647 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,647 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,662 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,662 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,662 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,662 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,662 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_29337> // src=<http://purl.obolibrary.org/obo/CHEBI_29340-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 19:48:01,662 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 70 Logical Axioms: 70]
2013-10-16 19:48:01,662 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:01,663 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,663 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,676 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 13 ms
2013-10-16 19:48:01,676 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,676 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,676 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,676 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,677 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,677 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,677 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,677 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,677 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,677 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,677 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,677 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,678 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,678 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,684 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:01,684 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,684 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,685 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,685 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,685 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,685 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,685 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,685 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,700 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,700 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,700 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,700 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,701 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,701 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,701 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,701 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,701 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,701 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,701 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,701 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,702 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,702 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,702 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,702 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,702 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,702 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,702 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,702 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,703 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,703 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,703 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,703 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,703 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,703 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,703 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,703 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,703 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,704 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,718 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,718 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,718 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,718 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,718 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,719 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,719 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,719 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,719 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,719 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,719 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,719 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,726 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:01,737 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,737 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,738 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,738 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,738 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,738 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,738 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,738 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,738 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,739 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,739 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,739 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,739 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,739 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,739 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,739 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,739 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,754 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,754 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,755 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,755 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,755 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_29337-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:01,755 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 19:48:01,755 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 71 Logical Axioms: 71]
2013-10-16 19:48:01,755 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 19:48:01,756 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,756 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,765 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 19:48:01,765 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:01,765 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,765 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,765 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,766 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,766 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,766 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,766 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,766 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,766 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,766 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,766 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,767 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,767 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,767 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,767 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,767 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,767 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,767 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,767 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,768 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,768 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,768 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,768 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,782 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,782 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,782 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,782 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,783 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,783 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,783 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 19:48:01,783 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 19:48:01,783 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,783 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,783 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,783 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,783 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,783 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,784 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,784 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,784 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,784 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,784 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,784 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,784 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,784 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,785 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,785 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,785 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,785 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,785 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,785 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,785 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,785 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,785 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,786 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,800 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,800 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,800 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,800 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,801 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,801 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,801 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 19:48:01,801 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,801 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,801 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,801 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,801 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,801 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,802 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,812 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,813 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,813 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,813 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,813 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,813 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,813 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,813 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,814 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,814 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,814 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,814 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,814 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,814 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,814 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,814 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,814 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,829 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,829 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,829 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,830 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,830 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_29337-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 19:48:01,830 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 73 Logical Axioms: 73]
2013-10-16 19:48:01,830 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 19:48:01,830 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,830 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,839 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:01,839 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,839 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,839 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,840 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,840 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,840 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,840 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,840 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,840 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,840 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,840 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,841 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,841 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,841 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,847 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:01,848 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,848 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,848 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,848 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,848 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,848 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,848 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,848 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,863 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,863 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,863 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,863 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,863 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,864 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,864 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,864 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,864 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,864 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,864 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,864 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,865 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,865 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,865 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,865 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,865 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,865 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,865 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,865 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,865 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,866 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,866 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,866 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,866 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,866 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,866 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,866 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,866 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,866 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,881 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,881 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,881 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,882 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,882 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,882 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,882 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,882 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,882 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,882 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,882 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,883 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,889 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:01,901 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,901 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,901 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,901 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,902 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,902 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,902 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,902 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,902 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,902 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,902 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,902 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,903 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,903 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,903 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,903 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,903 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,918 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:01,918 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,918 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,919 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,919 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_29337-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:01,919 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 19:48:01,919 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 74 Logical Axioms: 74]
2013-10-16 19:48:01,919 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 19:48:01,919 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,919 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,928 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:01,928 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,929 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,929 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,929 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,929 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,929 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,929 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,929 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,930 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,930 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,930 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,930 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,930 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,930 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,936 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:01,936 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,937 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,937 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,937 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,937 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,937 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,937 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,937 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,952 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,952 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,952 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,952 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,952 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,953 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,953 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,953 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,953 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,953 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,953 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,953 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,954 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:01,954 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,954 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,954 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,954 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,954 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,954 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,954 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,954 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,955 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,955 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,955 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,955 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,955 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,955 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,955 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,955 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,955 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:01,970 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:01,970 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:01,970 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:01,970 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:01,971 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:01,971 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:01,971 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:01,971 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:01,971 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:01,971 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:01,971 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:01,971 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:01,978 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:01,990 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:01,990 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:01,990 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:01,990 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:01,990 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:01,991 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:01,991 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:01,991 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:01,991 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:01,991 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:01,991 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:01,991 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:01,991 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:01,992 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:01,992 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:01,992 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:01,992 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,007 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,007 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,007 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,007 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,008 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_29337-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:02,008 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 19:48:02,008 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 76 Logical Axioms: 76]
2013-10-16 19:48:02,008 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_28938>)
2013-10-16 19:48:02,008 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,008 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,017 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:02,017 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:02,017 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,017 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,018 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,018 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,018 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,018 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,018 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,018 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,018 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,019 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,019 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,019 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,019 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,019 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,019 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,019 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,019 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,020 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,020 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,020 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,020 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,020 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,020 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,034 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,034 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,034 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,035 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,035 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,035 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,035 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:02,035 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:02,035 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,035 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,035 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,036 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,036 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,036 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,036 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,036 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,036 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,037 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,037 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,037 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,037 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,037 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,037 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,037 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,037 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,037 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,037 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,038 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,038 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,038 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,038 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,038 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,052 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,052 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,053 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,053 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,053 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,053 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,053 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:02,053 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,053 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,053 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,054 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,054 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,054 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,054 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,065 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,065 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,065 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,065 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,066 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,066 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,066 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,066 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,066 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,066 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,066 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,066 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,067 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,067 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,067 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,067 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,067 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,082 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:02,082 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,082 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,083 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,083 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_28938> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 19:48:02,083 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_28938> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 78 Logical Axioms: 78]
2013-10-16 19:48:02,083 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 19:48:02,083 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 79 Logical Axioms: 79]
2013-10-16 19:48:02,083 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,083 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,093 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:02,093 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,093 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,093 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,093 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,093 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,094 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,094 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,094 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,094 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,094 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,094 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,094 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,094 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,095 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,101 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:02,101 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,101 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,107 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 5 ms
2013-10-16 19:48:02,107 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,107 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,109 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 1 ms
2013-10-16 19:48:02,109 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,109 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,123 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,123 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,124 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,124 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,124 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:02,124 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:02,124 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:02,125 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_28938-proto> is 44
2013-10-16 19:48:02,125 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_28938-proto> is 12
2013-10-16 19:48:02,125 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 19:48:02,125 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,126 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,126 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>)))
2013-10-16 19:48:02,126 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,126 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,126 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,126 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,126 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,126 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,127 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,127 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,127 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,127 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,127 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,127 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,127 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,127 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,128 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,128 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,128 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,128 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,128 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,128 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,128 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,128 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,128 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,129 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,144 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:02,144 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,144 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,145 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,145 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,145 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,145 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>)))
2013-10-16 19:48:02,145 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>)))
2013-10-16 19:48:02,145 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,145 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,145 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,146 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,146 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,146 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,146 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,146 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,146 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,146 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,146 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,147 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,147 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,147 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,147 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,147 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,147 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,147 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,147 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,148 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,148 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,148 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,148 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,148 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,162 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,162 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,162 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,163 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,163 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,163 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,163 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>)))
2013-10-16 19:48:02,163 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,163 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,163 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,164 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,164 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,164 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,164 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,175 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,176 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,176 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,176 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,176 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,176 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,176 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,176 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,177 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,177 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,177 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,177 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,177 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,177 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,177 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,177 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,177 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,192 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,192 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,192 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,193 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,193 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_28938-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 19:48:02,193 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 80 Logical Axioms: 80]
2013-10-16 19:48:02,193 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:02,193 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,193 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,203 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:02,203 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,203 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,203 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,203 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,203 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,204 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,204 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,204 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,204 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,204 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,204 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,204 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,204 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,204 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,211 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:02,211 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,211 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,211 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,211 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,212 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,212 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,212 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,212 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,226 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,226 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,227 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,227 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,227 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,227 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,227 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,227 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,228 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,228 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,228 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,228 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,228 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,228 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,228 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,228 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,228 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,229 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,229 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,229 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,229 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,229 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,229 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,229 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,229 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,229 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,230 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,230 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,230 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,230 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,244 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,244 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,244 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,245 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,245 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,245 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,245 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,245 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,245 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,245 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,245 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,246 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,252 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:02,264 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,264 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,265 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,265 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,265 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,265 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,265 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,265 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,265 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,265 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,265 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,266 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,266 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,266 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,266 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,266 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,266 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,281 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,281 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,281 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,281 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,281 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_28938-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:02,282 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 19:48:02,282 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 81 Logical Axioms: 81]
2013-10-16 19:48:02,282 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 19:48:02,282 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,282 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,291 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:02,291 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,291 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,292 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,292 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,292 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,292 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,292 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,292 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,292 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,292 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,293 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,293 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,293 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,293 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,300 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:02,300 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,300 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,300 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,300 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,301 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,301 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,301 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,301 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,315 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,316 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,316 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,316 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,316 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,316 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,316 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,317 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,317 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,317 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,317 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,317 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,317 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,317 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,317 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,318 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,318 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,318 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,318 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,318 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,318 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,318 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,318 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,319 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,319 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,319 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,319 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,319 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,319 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,319 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,334 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,334 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,334 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,334 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,334 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,334 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,334 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,335 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,335 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,335 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,335 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,335 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,341 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:02,353 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,353 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,354 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,354 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,354 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,354 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,354 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,354 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,355 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,355 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,355 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,355 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,355 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,355 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,355 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,355 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,356 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,371 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:02,371 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,371 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,371 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,372 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_28938-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:02,372 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 19:48:02,372 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 83 Logical Axioms: 83]
2013-10-16 19:48:02,372 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 19:48:02,372 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,372 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,381 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:02,381 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,382 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,382 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,382 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,382 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,382 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,382 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,382 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,382 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,382 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,383 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,383 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,383 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,383 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,389 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:02,389 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,389 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,390 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,390 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,390 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,390 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,390 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,390 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,405 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,405 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,405 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,405 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,405 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,405 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,406 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,406 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,406 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,406 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,406 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,406 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,406 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,406 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,407 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,407 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,407 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,407 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,407 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,407 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,407 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,407 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,407 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,408 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,408 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,408 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,408 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,408 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,408 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,408 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,423 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,423 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,423 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,424 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,424 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,424 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,424 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,424 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,424 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,424 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,424 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,425 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,431 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:02,443 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,443 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,443 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,443 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,443 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,444 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,444 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,444 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,444 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,444 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,444 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,444 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,444 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,444 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,445 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,445 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,445 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,460 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,460 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,460 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,460 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,460 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_28938-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:02,460 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 19:48:02,461 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 85 Logical Axioms: 85]
2013-10-16 19:48:02,461 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 19:48:02,461 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,461 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,470 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:02,470 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,470 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,470 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,471 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,471 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,471 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,471 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,471 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,471 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,471 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,471 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,471 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,472 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,472 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,478 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:02,478 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,478 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,478 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,478 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,478 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,479 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,479 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,479 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,493 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,493 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,493 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,493 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,494 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,494 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,494 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,494 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,494 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,494 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,494 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,494 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,495 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,495 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,495 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,495 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,495 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,495 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,495 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,495 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,496 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,496 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,496 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,496 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,496 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,496 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,496 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,496 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,497 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,497 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,511 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,511 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,511 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,511 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,512 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,512 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,512 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,512 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,512 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,512 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,512 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,512 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,519 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:02,531 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,531 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,531 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,531 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,531 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,532 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,532 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,532 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,532 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,532 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,532 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,532 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,532 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,532 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,533 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,533 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,533 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,548 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:02,548 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,549 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,549 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,549 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:02,549 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 19:48:02,549 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 87 Logical Axioms: 87]
2013-10-16 19:48:02,549 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_50910>)
2013-10-16 19:48:02,550 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,550 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,559 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:02,559 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:02,559 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,559 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,559 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,560 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,560 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,560 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,560 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,560 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,560 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,560 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,560 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,561 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,561 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,561 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,561 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,561 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,561 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,561 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,561 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,561 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,562 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,562 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,562 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,576 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,576 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,576 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,576 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,576 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,576 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,577 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:02,577 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:02,577 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,577 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,577 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,577 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,577 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,577 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,578 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,578 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,578 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,578 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,578 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,578 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,578 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,578 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,578 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,579 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,579 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,579 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,579 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,579 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,579 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,579 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,579 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,579 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,594 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,594 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,594 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,594 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,594 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,594 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,599 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 19:48:02,599 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 4 ms
2013-10-16 19:48:02,599 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,600 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,600 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,600 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,600 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,600 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,611 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,611 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,611 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,611 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,612 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,612 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,612 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,612 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,612 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,612 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,612 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,612 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,612 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,613 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,613 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,613 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,613 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,628 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:02,628 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,628 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,628 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,629 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_50910> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 19:48:02,629 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_50910> <http://purl.obolibrary.org/obo/CHEBI_50910-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 89 Logical Axioms: 89]
2013-10-16 19:48:02,629 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_50910-proto>
2013-10-16 19:48:02,629 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_50910-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 90 Logical Axioms: 90]
2013-10-16 19:48:02,629 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,629 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,638 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:02,638 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,638 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,639 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,639 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,639 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,639 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,639 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,639 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,639 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,639 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,640 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,640 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,640 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,640 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,646 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:02,646 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,646 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,647 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,647 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,647 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,647 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,647 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,647 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,662 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,662 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,662 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,662 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,662 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:02,662 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:02,663 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:02,663 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_50910-proto> is 6
2013-10-16 19:48:02,663 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_50910-proto> is 0
2013-10-16 19:48:02,663 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 19:48:02,663 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,663 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,663 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,663 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,664 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,664 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,664 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,664 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,664 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,664 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,664 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,664 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,664 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,665 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,665 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,665 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,665 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,671 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:02,671 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,672 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,672 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,672 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,672 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,672 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,672 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,672 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,687 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,687 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,687 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,687 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,687 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,687 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,688 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,688 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,688 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,688 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,688 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,688 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,688 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,689 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,689 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,689 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,689 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,689 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,689 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,689 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,689 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,690 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,690 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,690 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,690 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,690 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,690 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,690 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,690 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,690 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,705 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,705 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,705 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,705 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,705 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,705 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,706 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,706 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,706 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,706 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,706 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,706 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,712 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:02,723 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,724 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,724 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,724 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,724 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,724 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,725 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,725 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,725 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,725 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,725 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,725 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,725 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,725 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,726 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,726 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,726 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,740 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,740 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,741 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,741 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,741 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:02,741 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 19:48:02,741 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 91 Logical Axioms: 91]
2013-10-16 19:48:02,741 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 19:48:02,742 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,742 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,751 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:02,751 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,751 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,751 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,751 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,751 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,752 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,752 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,752 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,752 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,752 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,752 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,752 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,752 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,752 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,759 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:02,759 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,759 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,759 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,759 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,759 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,759 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,760 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,760 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,774 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,774 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,774 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,774 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,775 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,775 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,775 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,775 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,775 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,775 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,775 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,775 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,776 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,776 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,776 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,776 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,776 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,776 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,776 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,776 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,776 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,777 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,777 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,777 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,777 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,777 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,777 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,777 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,777 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,777 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,792 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,792 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,792 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,792 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,792 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,793 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,793 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,793 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,793 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,793 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,793 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,793 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,800 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:02,811 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,811 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,811 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,811 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,812 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,812 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,812 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,812 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,812 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,812 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,812 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,812 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,812 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,813 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,813 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,813 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,813 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,828 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,828 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,828 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,828 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,828 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:02,828 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_25805> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 93 Logical Axioms: 93]
2013-10-16 19:48:02,829 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 19:48:02,829 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 19:48:02,829 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 94 Logical Axioms: 94]
2013-10-16 19:48:02,829 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,829 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,838 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:02,838 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,838 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,838 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,839 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,839 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,839 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,839 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,839 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,839 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,839 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,839 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,840 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,840 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,840 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,846 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:02,846 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,846 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,847 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,847 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,847 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,847 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,847 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,847 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,861 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,862 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,862 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,862 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,862 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:02,862 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:02,862 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:02,863 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_25805-proto> is 13
2013-10-16 19:48:02,863 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_25805-proto> is 5
2013-10-16 19:48:02,863 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33937>)
2013-10-16 19:48:02,863 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,863 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,863 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>)))
2013-10-16 19:48:02,863 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,863 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,863 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,864 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,864 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,864 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,864 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,864 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,864 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,864 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,864 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,865 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,865 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,865 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,865 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,865 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,865 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,865 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,866 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,866 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,866 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,866 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,866 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,866 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,880 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,881 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,881 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,881 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,881 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,881 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,881 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>)))
2013-10-16 19:48:02,881 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>)))
2013-10-16 19:48:02,881 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,882 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,882 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,882 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,882 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,882 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,882 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,882 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,882 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,882 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,883 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,883 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,883 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,883 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,883 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,883 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,883 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,883 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,883 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,884 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,884 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,884 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,884 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,884 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,898 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,898 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,899 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,899 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,899 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,899 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,899 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>)))
2013-10-16 19:48:02,899 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,899 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,899 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,900 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,900 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,900 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,900 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,911 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,911 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,911 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,911 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,911 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,911 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,912 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,912 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,912 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,912 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,912 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,912 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,912 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,912 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,912 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,913 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,913 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,927 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,928 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,928 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,928 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,928 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33937> // src=<http://purl.obolibrary.org/obo/CHEBI_25805-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 19:48:02,928 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33937-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 96 Logical Axioms: 96]
2013-10-16 19:48:02,928 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252>)
2013-10-16 19:48:02,929 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,929 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,937 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:02,938 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,938 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,938 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,938 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,938 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,938 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,938 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,938 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,939 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,939 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,939 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,939 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,939 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,939 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,946 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:02,946 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,946 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,946 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,946 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,946 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,946 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,946 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,947 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,961 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,961 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,961 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,961 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,962 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,962 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,962 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,962 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,962 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,962 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,962 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,962 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,963 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:02,963 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,963 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,963 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,963 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,963 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,963 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,963 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,964 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,964 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,964 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,964 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:02,964 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:02,964 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:02,964 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:02,964 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:02,964 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:02,964 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:02,979 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:02,979 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:02,979 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:02,979 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:02,979 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:02,979 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:02,980 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:02,980 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:02,980 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:02,980 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:02,980 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:02,980 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:02,986 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:02,998 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:02,998 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:02,999 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:02,999 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:02,999 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:02,999 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:02,999 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:02,999 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:02,999 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:02,999 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:02,999 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,000 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,000 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,000 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,000 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,000 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,000 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,015 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,015 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,015 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,015 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,016 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33252> // src=<http://purl.obolibrary.org/obo/CHEBI_25805-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:03,016 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 19:48:03,016 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 97 Logical Axioms: 97]
2013-10-16 19:48:03,016 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_10545>)
2013-10-16 19:48:03,016 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,016 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,025 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:03,025 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,025 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,026 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,026 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,026 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,026 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,026 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,026 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,026 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,026 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,027 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,027 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,027 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,027 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,033 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,033 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,033 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,034 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,034 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,034 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,039 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 4 ms
2013-10-16 19:48:03,039 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,039 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,053 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,053 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,053 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,054 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,054 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,054 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,054 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,054 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,054 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,054 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,055 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,055 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,055 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,055 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,055 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,055 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,055 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,055 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,056 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,056 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,056 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,056 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,056 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,056 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,056 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,056 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,056 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,056 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,057 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,057 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,071 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,071 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,071 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,072 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,072 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,072 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,072 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,072 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,072 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,072 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,072 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,072 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,079 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:03,090 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,091 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,091 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,091 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,091 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,091 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,091 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,091 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,092 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,092 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,092 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,092 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,092 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,092 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,092 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,093 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,093 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,107 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,107 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,108 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,108 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,108 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_10545> // src=<http://purl.obolibrary.org/obo/CHEBI_25805-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:03,108 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 19:48:03,108 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 99 Logical Axioms: 99]
2013-10-16 19:48:03,108 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33708>)
2013-10-16 19:48:03,108 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,109 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,117 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:03,118 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,118 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,118 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,118 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,118 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,118 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,118 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,118 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,118 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,119 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,119 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,119 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,119 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,119 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,126 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,126 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,126 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,126 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,126 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,126 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,126 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,126 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,127 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,141 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,141 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,141 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,141 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,142 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,142 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,142 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,142 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,142 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,142 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,142 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,142 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,143 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,143 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,143 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,143 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,143 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,143 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,143 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,143 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,143 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,144 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,144 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,144 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,144 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,144 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,144 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,144 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,144 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,144 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,158 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,159 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,159 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,159 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,159 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,159 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,159 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,159 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,159 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,160 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,160 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,160 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,166 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:03,177 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,177 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,177 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,177 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,178 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,178 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,178 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,178 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,178 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,178 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,178 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,178 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,178 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,179 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,179 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,179 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,179 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,194 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,194 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,194 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,194 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,194 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33708> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:03,195 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33708> <http://purl.obolibrary.org/obo/CHEBI_33708-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 101 Logical Axioms: 101]
2013-10-16 19:48:03,195 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33708-proto>
2013-10-16 19:48:03,195 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33708-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 19:48:03,195 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33708-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_33708-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 102 Logical Axioms: 102]
2013-10-16 19:48:03,195 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,195 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,204 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:03,204 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,204 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,204 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,205 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,205 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,205 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,205 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,205 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,205 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,205 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,205 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,206 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,206 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,206 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,212 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,212 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,212 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,212 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,213 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,213 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,213 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,213 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,213 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,228 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,228 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,228 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,229 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,229 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:03,229 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:03,229 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:03,229 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33708-proto> is 12
2013-10-16 19:48:03,229 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33708-proto> is 7
2013-10-16 19:48:03,230 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33709>)
2013-10-16 19:48:03,230 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,230 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,230 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>)))
2013-10-16 19:48:03,230 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,230 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,230 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,230 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,231 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,231 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,231 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,231 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,231 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,231 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,231 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,231 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,232 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,232 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,232 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,232 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,232 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,232 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,232 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,232 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,232 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,232 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,233 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,233 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,247 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,247 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,247 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,247 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,248 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,248 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,248 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>)))
2013-10-16 19:48:03,248 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>)))
2013-10-16 19:48:03,248 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,248 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,248 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,248 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,248 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,248 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,249 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,249 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,249 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,249 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,249 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,249 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,249 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,249 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,250 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,250 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,250 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,250 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,250 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,250 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,250 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,250 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,250 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,250 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,265 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,265 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,265 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,265 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,265 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,265 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,265 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>)))
2013-10-16 19:48:03,266 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,266 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,266 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,266 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,266 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,266 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,266 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,277 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,277 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,278 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,278 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,278 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,278 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,278 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,278 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,278 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,278 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,279 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,279 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,279 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,279 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,279 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,279 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,279 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,294 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,294 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,294 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,294 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,295 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33709> // src=<http://purl.obolibrary.org/obo/CHEBI_33708-proto> via <http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>
2013-10-16 19:48:03,295 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33709> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 104 Logical Axioms: 104]
2013-10-16 19:48:03,295 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 19:48:03,295 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33708-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 105 Logical Axioms: 105]
2013-10-16 19:48:03,295 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,295 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,304 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:03,304 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,304 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,305 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,305 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,305 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,305 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,305 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,305 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,305 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,305 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,306 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,306 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,306 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,306 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,313 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,313 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,313 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,313 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,313 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,313 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,314 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,314 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,314 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,328 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,328 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,328 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,329 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,329 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:03,329 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:03,329 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:03,330 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33709-proto> is 59
2013-10-16 19:48:03,330 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33709-proto> is 24
2013-10-16 19:48:03,331 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_43176>)
2013-10-16 19:48:03,331 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,331 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,331 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,331 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,331 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,331 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,332 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,332 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,332 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,332 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,332 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,332 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,332 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,332 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,333 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,333 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,333 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,339 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,339 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,339 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,339 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,340 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,340 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,340 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,340 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,340 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,355 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,355 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,355 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,355 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,355 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,356 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,356 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,356 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,356 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,356 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,356 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,356 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,357 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,357 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,357 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,357 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,357 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,357 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,357 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,357 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,357 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,358 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,358 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,358 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,358 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,358 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,358 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,358 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,358 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,358 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,373 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,373 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,373 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,373 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,373 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,374 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,374 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,374 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,374 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,374 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,374 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,374 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,381 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:03,393 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,393 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,393 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,393 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,394 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,394 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,394 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,394 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,394 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,394 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,394 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,394 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,395 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,395 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,395 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,395 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,395 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,410 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,410 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,410 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,410 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,410 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_43176> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:03,411 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_43176> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 106 Logical Axioms: 106]
2013-10-16 19:48:03,411 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_43176-proto>
2013-10-16 19:48:03,411 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 19:48:03,411 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 107 Logical Axioms: 107]
2013-10-16 19:48:03,411 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,411 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,420 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:03,420 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,420 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,420 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,421 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,421 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,421 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,421 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,421 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,421 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,421 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,421 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,421 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,422 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,422 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,428 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,429 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,429 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,429 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,429 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,429 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,429 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,429 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,430 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,444 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,444 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,444 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,444 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,444 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:03,445 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:03,445 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:03,445 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_43176-proto> is 9
2013-10-16 19:48:03,445 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_43176-proto> is 4
2013-10-16 19:48:03,445 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 19:48:03,445 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,445 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,446 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,446 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,446 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,446 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,446 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,446 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,446 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,447 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,447 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,447 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,447 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,447 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,447 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,447 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,447 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,454 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,454 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,454 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,454 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,454 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,454 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,454 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,455 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,455 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,469 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,469 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,469 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,470 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,470 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,470 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,470 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,470 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,470 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,470 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,471 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,471 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,471 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,471 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,471 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,471 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,471 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,471 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,472 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,472 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,472 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,472 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,472 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,472 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,472 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,472 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,472 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,472 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,473 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,473 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,487 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,487 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,487 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,487 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,488 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,488 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,488 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,488 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,488 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,488 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,488 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,488 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,495 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:03,506 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,506 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,507 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,507 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,507 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,511 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 4 ms
2013-10-16 19:48:03,511 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,511 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,512 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,512 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,512 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,512 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,512 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,512 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,512 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,512 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,512 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,527 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,527 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,527 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,528 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,528 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_43176-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:03,528 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>
2013-10-16 19:48:03,528 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 109 Logical Axioms: 109]
2013-10-16 19:48:03,528 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46883>)
2013-10-16 19:48:03,528 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,528 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,538 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:03,538 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,538 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,538 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,538 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,538 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,539 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,539 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,539 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,539 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,539 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,539 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,539 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,539 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,539 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,546 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,546 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,546 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,546 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,546 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,546 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,547 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,547 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,547 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,561 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,562 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,562 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,562 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,562 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,562 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,562 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,562 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,562 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,563 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,563 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,563 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,563 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,563 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,563 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,563 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,564 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,564 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,564 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,564 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,564 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,564 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,564 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,564 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,564 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,564 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,565 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,565 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,565 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,565 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,580 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,580 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,580 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,580 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,580 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,580 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,581 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,581 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,581 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,581 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,581 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,581 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,588 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:03,599 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,599 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,600 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,600 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,600 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,600 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,600 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,600 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,600 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,600 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,600 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,601 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,601 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,601 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,601 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,601 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,601 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,617 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:03,617 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,617 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,617 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,617 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46883> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:03,617 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_46883> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 111 Logical Axioms: 111]
2013-10-16 19:48:03,618 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_46883-proto>
2013-10-16 19:48:03,618 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 19:48:03,618 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 112 Logical Axioms: 112]
2013-10-16 19:48:03,618 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,618 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,627 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:03,627 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,627 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,627 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,627 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,628 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,628 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,628 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,628 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,628 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,628 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,628 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,628 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,628 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,629 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,635 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,635 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,635 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,635 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,636 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,636 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,636 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,636 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,636 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,651 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,651 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,651 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,651 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,651 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:03,651 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:03,651 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:03,652 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_46883-proto> is 12
2013-10-16 19:48:03,652 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_46883-proto> is 5
2013-10-16 19:48:03,652 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_50860>)
2013-10-16 19:48:03,652 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,652 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,652 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>)))
2013-10-16 19:48:03,652 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,652 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,653 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,653 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,653 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,653 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,653 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,653 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,653 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,654 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,654 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,654 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,654 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,654 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,654 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,654 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,654 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,654 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,655 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,655 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,655 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,655 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,655 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,655 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,670 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,670 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,670 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,670 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,670 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,670 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,670 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>)))
2013-10-16 19:48:03,671 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>)))
2013-10-16 19:48:03,671 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,671 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,671 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,671 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,671 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,671 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,671 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,671 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,671 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,672 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,672 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,672 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,672 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,672 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,672 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,672 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,672 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,672 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,673 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,673 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,673 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,673 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,673 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,673 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,687 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,688 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,688 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,688 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,688 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,688 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,688 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>)))
2013-10-16 19:48:03,688 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,689 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,689 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,689 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,689 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,689 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,689 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,700 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,700 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,701 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,701 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,701 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,701 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,701 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,701 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,701 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,701 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,701 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,702 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,702 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,702 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,702 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,702 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,702 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,717 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,717 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,717 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,718 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,718 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_50860> // src=<http://purl.obolibrary.org/obo/CHEBI_46883-proto> via <http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>
2013-10-16 19:48:03,718 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_50860> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 114 Logical Axioms: 114]
2013-10-16 19:48:03,718 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_50860-proto>
2013-10-16 19:48:03,718 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 115 Logical Axioms: 115]
2013-10-16 19:48:03,718 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,718 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,727 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:03,727 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,727 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,727 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,728 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,728 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,728 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,728 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,728 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,728 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,728 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,728 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,728 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,729 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,729 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,735 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,735 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,736 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,736 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,736 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,736 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,736 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,736 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,736 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,751 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,751 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,751 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,751 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,752 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:03,752 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:03,752 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:03,752 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_50860-proto> is 20
2013-10-16 19:48:03,752 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_50860-proto> is 8
2013-10-16 19:48:03,753 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 19:48:03,753 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,753 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,753 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,753 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,753 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,753 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,754 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,754 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,754 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,754 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,754 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,754 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,754 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,754 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,755 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,755 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,755 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,761 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,761 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,761 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,762 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,762 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,762 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,762 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,762 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,762 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,776 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,776 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,777 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,777 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,777 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,777 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,777 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,777 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,777 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,778 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,778 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,778 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,778 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,778 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,778 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,778 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,778 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,778 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,779 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,779 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,779 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,779 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,779 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,779 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,779 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,779 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,779 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,780 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,780 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,780 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,794 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,794 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,794 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,795 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,795 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,795 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,795 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,795 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,795 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,795 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,795 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,795 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,802 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:03,813 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,813 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,814 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,814 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,814 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,814 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,814 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,814 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,814 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,814 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,814 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,815 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,815 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,815 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,815 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,815 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,815 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,830 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,830 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,830 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,830 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,831 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_50860-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:03,831 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_27594> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 116 Logical Axioms: 116]
2013-10-16 19:48:03,831 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 19:48:03,831 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>
2013-10-16 19:48:03,831 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_50860-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 117 Logical Axioms: 117]
2013-10-16 19:48:03,831 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,831 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,840 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:03,840 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,840 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,841 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,841 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,841 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,841 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,841 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,841 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,841 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,841 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,842 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,842 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,842 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,842 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,848 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,849 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,849 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,849 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,849 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,849 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,849 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,850 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,850 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,865 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:03,865 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,865 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,865 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,865 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:03,865 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:03,866 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:03,866 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_27594-proto> is 13
2013-10-16 19:48:03,866 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_27594-proto> is 5
2013-10-16 19:48:03,866 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33937>)
2013-10-16 19:48:03,866 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,866 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,866 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>)))
2013-10-16 19:48:03,867 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,867 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,867 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,867 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,867 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,867 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,867 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,867 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,868 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,868 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,868 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,868 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,868 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,868 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,868 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,868 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,869 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,869 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,869 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,869 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,869 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,869 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,869 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,869 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,884 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,884 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,884 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,884 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,885 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,885 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,885 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>)))
2013-10-16 19:48:03,885 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>)))
2013-10-16 19:48:03,885 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,885 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,885 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,885 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,885 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,886 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,886 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,886 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,886 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,886 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,886 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,886 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,886 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,887 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,887 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,887 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,887 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,887 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,887 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,887 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,887 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,888 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,888 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,888 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,902 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,902 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,902 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,902 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,903 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,903 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,903 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>)))
2013-10-16 19:48:03,903 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,903 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,903 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,903 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,903 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,903 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,904 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,915 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,915 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,916 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,916 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,916 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,916 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,916 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,916 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,916 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,916 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,917 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,917 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,917 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,917 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,917 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,917 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,917 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,932 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,932 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,933 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,933 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,933 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33937> // src=<http://purl.obolibrary.org/obo/CHEBI_27594-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 19:48:03,933 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33937-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 119 Logical Axioms: 119]
2013-10-16 19:48:03,933 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252>)
2013-10-16 19:48:03,933 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,933 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,942 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:03,942 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,943 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,943 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,943 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,943 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,943 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,943 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,943 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,944 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,944 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,944 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,944 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,944 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,944 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,951 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:03,951 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,951 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,951 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,951 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,951 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,956 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 4 ms
2013-10-16 19:48:03,957 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,957 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,971 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,971 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,971 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,972 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,972 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,972 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,972 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,972 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,972 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,972 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,973 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,973 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,973 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:03,973 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:03,973 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:03,973 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:03,973 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:03,973 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:03,973 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:03,974 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:03,974 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:03,974 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:03,974 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:03,974 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:03,974 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:03,974 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:03,974 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:03,974 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:03,975 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:03,975 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:03,989 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:03,990 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:03,990 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:03,990 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:03,990 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:03,990 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:03,990 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:03,990 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:03,990 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:03,991 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:03,991 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:03,991 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:03,997 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:04,008 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,009 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,009 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,009 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,009 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,009 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,009 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,009 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,010 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,010 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,010 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,010 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,010 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,010 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,010 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,010 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,010 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,025 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,026 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,026 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,026 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,026 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33252> // src=<http://purl.obolibrary.org/obo/CHEBI_27594-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:04,026 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 19:48:04,026 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 120 Logical Axioms: 120]
2013-10-16 19:48:04,026 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_10545>)
2013-10-16 19:48:04,027 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,027 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,035 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:04,036 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,036 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,036 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,036 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,036 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,036 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,036 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,037 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,037 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,037 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,037 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,037 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,037 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,037 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,044 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:04,044 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,044 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,044 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,044 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,044 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,045 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,045 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,045 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,059 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,059 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,060 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,060 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,060 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,060 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,060 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,060 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,060 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,061 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,061 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,061 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,061 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,061 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,061 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,061 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,061 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,061 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,062 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,062 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,062 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,062 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,062 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,062 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,062 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,062 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,063 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,063 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,063 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,063 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,077 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,078 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,078 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,078 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,078 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,078 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,078 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,079 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,079 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,079 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,079 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,079 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,085 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:04,096 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,097 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,097 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,097 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,097 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,097 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,097 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,098 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,098 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,098 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,098 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,098 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,098 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,098 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,098 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,098 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,099 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,113 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,113 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,113 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,114 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,114 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_10545> // src=<http://purl.obolibrary.org/obo/CHEBI_27594-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:04,114 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 19:48:04,114 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 122 Logical Axioms: 122]
2013-10-16 19:48:04,114 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 19:48:04,114 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,114 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,123 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:04,123 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,123 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,124 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,124 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,124 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,124 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,124 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,124 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,125 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,125 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,125 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,125 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,125 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,125 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,131 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 19:48:04,131 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,131 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,132 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,132 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,132 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,132 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,132 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,132 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,146 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,146 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,147 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,147 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,147 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,147 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,147 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,147 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,147 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,148 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,148 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,148 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,148 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,148 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,148 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,149 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,149 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,149 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,149 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,149 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,149 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,149 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,149 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,150 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,150 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,150 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,150 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,150 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,150 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,150 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,165 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,165 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,166 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,166 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,166 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,166 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,166 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,166 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,166 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,166 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,167 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,167 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,173 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:04,184 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,184 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,185 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,185 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,185 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,185 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,185 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,185 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,186 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,186 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,186 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,186 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,186 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,186 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,186 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,186 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,186 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,202 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:04,202 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,202 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,202 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,202 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_46883-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:04,202 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>
2013-10-16 19:48:04,203 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 124 Logical Axioms: 124]
2013-10-16 19:48:04,203 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 19:48:04,203 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,203 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,212 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:04,212 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:04,212 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,212 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,212 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,213 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,213 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,213 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,213 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,213 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,213 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,213 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,213 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,214 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,214 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,214 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,214 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,214 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,214 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,214 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,214 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,214 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,215 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,215 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,215 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,229 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,229 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,229 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,230 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,230 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,230 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,230 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:04,230 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:04,230 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,230 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,230 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,231 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,231 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,231 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,231 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,231 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,231 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,231 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,232 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,232 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,232 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,232 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,232 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,232 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,232 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,232 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,232 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,233 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,233 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,233 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,233 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,233 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,248 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,248 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,248 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,248 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,248 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,248 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,248 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:04,248 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,249 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,249 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,249 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,249 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,249 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,249 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,261 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,261 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,261 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,261 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,261 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,261 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,261 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,262 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,262 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,262 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,262 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,262 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,262 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,262 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,262 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,262 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,263 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,279 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:04,279 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,279 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,279 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,279 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/chebi#has_parent_hydride>
2013-10-16 19:48:04,279 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 126 Logical Axioms: 126]
2013-10-16 19:48:04,279 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 19:48:04,280 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,280 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,289 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:04,289 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,289 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,289 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,289 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,289 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,289 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,290 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,290 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,290 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,290 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,290 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,290 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,290 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,290 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,297 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:04,297 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,297 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,297 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,297 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,298 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,298 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,298 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,298 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,313 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:04,313 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,313 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,314 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,314 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,314 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,314 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,314 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,314 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,314 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,315 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,315 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,315 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,315 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,315 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,315 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,315 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,315 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,316 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,316 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,316 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,316 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,316 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,316 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,316 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,316 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,316 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,316 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,316 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,317 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,331 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,331 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,331 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,331 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,332 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,332 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,332 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,332 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,332 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,332 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,332 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,332 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,339 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:04,350 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,350 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,351 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,351 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,351 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,351 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,351 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,351 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,351 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,351 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,351 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,352 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,352 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,352 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,352 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,352 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,352 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,367 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,367 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,367 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,367 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,368 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:04,368 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 19:48:04,368 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 127 Logical Axioms: 127]
2013-10-16 19:48:04,368 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46629>)
2013-10-16 19:48:04,368 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,368 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,377 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:04,377 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,377 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,378 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,378 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,378 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,378 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,378 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,378 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,378 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,379 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,379 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,379 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,379 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,379 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,385 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:04,385 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,386 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,386 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,386 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,386 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,386 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,386 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,386 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,401 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,401 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,401 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,402 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,402 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,402 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,402 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,402 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,402 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,402 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,403 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,403 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,403 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,403 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,403 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,403 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,403 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,403 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,403 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,404 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,404 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,404 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,404 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,404 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,404 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,404 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,404 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,404 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,404 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,405 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,419 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,419 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,419 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,419 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,419 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,420 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,420 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,420 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,420 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,420 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,420 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,420 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,431 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 11 ms
2013-10-16 19:48:04,443 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,443 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,443 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,443 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,443 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,443 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,444 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,444 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,444 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,444 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,444 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,444 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,444 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,444 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,444 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,445 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,445 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,459 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,459 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,460 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,460 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,460 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46629> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:04,460 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_46629> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 129 Logical Axioms: 129]
2013-10-16 19:48:04,460 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_46629-proto>
2013-10-16 19:48:04,460 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 19:48:04,461 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 130 Logical Axioms: 130]
2013-10-16 19:48:04,461 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,461 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,470 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:04,470 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,470 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,470 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,471 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,471 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,471 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,471 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,471 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,471 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,471 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,471 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,472 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,472 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,472 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,478 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:04,478 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,478 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,478 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,478 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,479 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,480 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 1 ms
2013-10-16 19:48:04,480 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,480 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,495 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,495 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,495 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,496 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,496 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:04,496 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:04,496 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:04,496 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_46629-proto> is 9
2013-10-16 19:48:04,496 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_46629-proto> is 4
2013-10-16 19:48:04,496 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 19:48:04,497 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,497 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,497 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,497 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,497 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,497 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,497 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,497 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,498 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,498 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,498 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,498 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,498 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,498 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,498 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,498 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,498 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,505 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:04,505 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,505 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,505 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,505 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,505 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,505 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,505 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,506 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,521 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,521 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,521 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,521 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,521 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,521 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,521 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,522 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,522 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,522 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,522 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,522 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,522 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,522 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,522 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,522 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,523 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,523 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,523 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,523 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,523 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,523 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,523 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,523 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,523 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,523 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,524 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,524 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,524 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,524 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,539 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,539 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,539 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,539 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,539 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,539 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,539 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,539 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,540 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,540 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,540 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,540 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,546 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:04,557 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,557 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,557 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,557 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,558 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,558 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,558 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,558 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,558 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,558 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,558 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,558 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,559 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,559 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,559 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,559 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,559 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,574 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,574 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,574 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,574 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,574 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_46629-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:04,574 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>
2013-10-16 19:48:04,575 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 132 Logical Axioms: 132]
2013-10-16 19:48:04,575 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23019>)
2013-10-16 19:48:04,575 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,575 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,584 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:04,584 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,584 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,584 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,584 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,585 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,585 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,585 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,585 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,585 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,585 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,585 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,585 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,586 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,586 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,592 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:04,592 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,592 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,592 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,592 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,592 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,593 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,593 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,593 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,607 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,607 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,607 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,608 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,608 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,608 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,608 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,608 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,608 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,608 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,608 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,609 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,609 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,609 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,609 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,609 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,609 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,609 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,609 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,609 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,610 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,610 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,610 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,610 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,610 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,610 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,610 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,610 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,610 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,610 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,625 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,625 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,625 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,625 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,625 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,625 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,626 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,626 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,626 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,626 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,626 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,626 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,633 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:04,644 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,644 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,644 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,644 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,644 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,645 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,645 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,645 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,645 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,645 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,645 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,645 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,645 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,645 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,646 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,646 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,646 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,661 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,661 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,661 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,661 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,661 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_23019> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:04,661 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_23019> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 134 Logical Axioms: 134]
2013-10-16 19:48:04,662 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_23019-proto>
2013-10-16 19:48:04,662 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 19:48:04,662 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 135 Logical Axioms: 135]
2013-10-16 19:48:04,662 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,662 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,671 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:04,671 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,671 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,671 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,671 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,671 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,672 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,672 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,672 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,672 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,672 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,672 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,672 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,672 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,673 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,679 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:04,679 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,679 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,679 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,679 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,679 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,680 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,680 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,680 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,694 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,694 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,694 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,695 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,695 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:04,695 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:04,697 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 2 ms
2013-10-16 19:48:04,697 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_23019-proto> is 12
2013-10-16 19:48:04,698 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_23019-proto> is 5
2013-10-16 19:48:04,698 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_50860>)
2013-10-16 19:48:04,698 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,698 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,698 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>)))
2013-10-16 19:48:04,698 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,698 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,698 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,699 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,699 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,699 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,699 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,699 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,699 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,699 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,699 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,700 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,700 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,700 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,700 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,700 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,700 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,700 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,700 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,700 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,700 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,701 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,701 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,701 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,715 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,715 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,715 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,716 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,716 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,716 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,716 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>)))
2013-10-16 19:48:04,716 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>)))
2013-10-16 19:48:04,716 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,716 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,716 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,716 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,717 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,717 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,717 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,717 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,717 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,717 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,717 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,717 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,717 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,718 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,718 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,718 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,718 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,718 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,718 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,718 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,718 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,718 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,718 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,719 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,733 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,733 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,733 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,733 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,734 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,734 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,734 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>)))
2013-10-16 19:48:04,734 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,734 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,734 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,734 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,734 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,734 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,735 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,745 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,745 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,746 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,746 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,746 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,746 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,746 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,746 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,746 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,746 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,747 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,747 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,747 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,747 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,747 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,747 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,747 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,762 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:04,762 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,762 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,763 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,763 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_50860> // src=<http://purl.obolibrary.org/obo/CHEBI_23019-proto> via <http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>
2013-10-16 19:48:04,763 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 137 Logical Axioms: 137]
2013-10-16 19:48:04,763 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 19:48:04,763 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,763 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,772 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:04,772 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,772 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,772 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,772 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,772 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,773 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,773 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,773 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,773 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,773 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,773 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,773 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,773 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,774 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,780 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:04,780 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,780 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,780 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,780 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,781 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,781 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,781 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,781 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,795 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,795 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,795 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,796 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,796 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,796 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,796 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,796 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,796 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,796 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,797 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,797 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,797 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,797 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,797 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,797 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,797 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,797 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,798 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,798 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,798 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,798 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,798 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,798 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,798 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,798 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,798 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,798 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,799 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,799 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,813 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,814 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,814 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,814 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,814 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,814 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,814 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,814 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,815 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,815 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,815 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,815 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,821 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:04,832 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,833 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,833 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,833 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,833 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,833 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,834 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,834 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,834 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,834 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,834 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,834 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,834 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,834 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,834 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,835 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,835 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,849 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,849 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,850 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,850 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,850 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_23019-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:04,850 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>
2013-10-16 19:48:04,850 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 138 Logical Axioms: 138]
2013-10-16 19:48:04,850 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:04,850 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,851 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,859 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:04,860 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,860 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,860 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,860 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,860 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,860 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,860 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,860 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,861 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,861 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,861 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,861 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,861 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,861 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,874 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 12 ms
2013-10-16 19:48:04,874 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,874 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,874 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,874 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,874 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,876 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 1 ms
2013-10-16 19:48:04,876 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,876 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,891 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,891 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,891 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,891 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,891 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,891 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,892 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,892 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,892 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,892 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,892 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,892 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,892 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,892 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,893 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,893 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,893 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,893 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,893 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,893 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,893 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,893 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,893 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,894 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,894 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,894 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,894 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,894 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,894 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,894 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,908 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,908 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,909 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,909 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,909 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,909 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,909 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,909 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,909 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,909 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,910 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,910 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,916 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:04,928 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,928 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,928 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,928 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,928 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,929 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,929 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,929 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,929 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,929 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,929 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,929 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,929 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,929 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,930 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,930 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,930 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,945 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,945 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,945 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,945 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,945 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:04,945 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 19:48:04,946 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 140 Logical Axioms: 140]
2013-10-16 19:48:04,946 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_39141>)
2013-10-16 19:48:04,946 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,946 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,955 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:04,955 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:04,955 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,955 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,956 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,956 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,956 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,956 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,956 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,956 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,956 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,956 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,956 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,957 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,957 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,957 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,957 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,957 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,957 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,957 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,957 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,957 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,958 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,958 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,958 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,972 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,972 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,973 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,973 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,973 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,973 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,973 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:04,973 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:04,973 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,973 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,973 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,974 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,974 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,974 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,974 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:04,974 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:04,974 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:04,974 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:04,974 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:04,975 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:04,975 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:04,975 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:04,975 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:04,975 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:04,975 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:04,975 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:04,975 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:04,975 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:04,976 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:04,976 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:04,976 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:04,976 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:04,990 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:04,990 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:04,990 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:04,991 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:04,991 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:04,991 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:04,991 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:04,991 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:04,991 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:04,991 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:04,991 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:04,992 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:04,992 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:04,992 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,004 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,004 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,004 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,004 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,005 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,005 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,005 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,005 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,005 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,005 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,005 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,005 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,005 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,006 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,006 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,006 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,006 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,021 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,021 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,021 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,021 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,021 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_39141> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 19:48:05,022 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_39141> <http://purl.obolibrary.org/obo/CHEBI_39141-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 142 Logical Axioms: 142]
2013-10-16 19:48:05,022 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_39141-proto>
2013-10-16 19:48:05,022 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_39141-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 143 Logical Axioms: 143]
2013-10-16 19:48:05,022 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,022 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,031 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:05,031 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,031 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,032 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,032 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,032 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,032 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,032 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,032 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,032 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,032 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,032 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,033 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,033 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,033 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,039 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:05,039 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,039 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,040 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,040 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,040 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,040 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,040 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,040 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,055 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,055 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,055 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,055 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,055 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:05,055 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:05,056 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:05,056 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_39141-proto> is 6
2013-10-16 19:48:05,056 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_39141-proto> is 0
2013-10-16 19:48:05,056 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_37022>)
2013-10-16 19:48:05,056 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,056 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,056 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:05,056 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,057 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,057 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,057 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,057 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,057 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,057 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,057 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,057 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,058 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,058 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,058 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,058 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,058 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,058 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,058 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,058 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,058 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,059 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,059 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,059 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,059 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,059 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,059 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,073 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,074 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,074 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,074 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,074 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,074 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,074 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:05,074 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:05,075 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,075 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,075 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,075 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,075 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,075 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,075 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,075 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,075 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,076 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,076 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,076 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,076 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,076 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,076 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,076 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,076 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,076 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,077 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,077 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,077 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,077 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,077 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,077 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,091 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,092 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,092 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,092 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,092 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,092 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,092 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 19:48:05,092 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,092 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,092 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,093 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,093 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,093 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,093 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,105 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,105 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,105 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,106 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,106 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,106 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,106 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,106 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,106 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,106 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,106 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,107 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,107 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,107 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,107 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,107 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,107 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,122 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,122 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,122 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,122 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,122 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_37022> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 19:48:05,122 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_37022> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 144 Logical Axioms: 144]
2013-10-16 19:48:05,122 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_37022-proto>
2013-10-16 19:48:05,123 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 145 Logical Axioms: 145]
2013-10-16 19:48:05,123 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,123 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,132 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:05,132 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,132 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,132 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,133 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,133 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,133 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,133 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,133 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,133 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,133 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,133 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,133 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,134 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,134 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,140 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:05,141 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,141 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,141 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,141 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,141 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,141 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,141 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,142 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,156 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,157 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,157 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,157 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,157 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:05,157 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:05,157 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:05,158 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_37022-proto> is 45
2013-10-16 19:48:05,158 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_37022-proto> is 15
2013-10-16 19:48:05,158 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 19:48:05,159 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,159 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,159 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,159 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,159 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,159 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,159 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,159 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,160 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,160 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,160 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,160 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,160 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,160 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,160 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,160 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,161 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,166 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 19:48:05,166 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,167 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,167 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,167 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,167 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,167 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,167 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,167 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,182 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,182 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,182 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,182 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,183 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,183 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,183 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,183 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,183 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,184 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,184 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,184 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,184 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,184 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,184 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,184 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,184 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,185 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,185 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,185 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,185 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,185 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,185 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,185 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,185 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,185 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,186 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,186 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,186 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,186 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,200 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,200 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,200 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,201 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,201 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,201 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,201 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,201 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,201 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,201 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,201 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,201 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,208 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:05,220 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,220 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,220 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,220 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,221 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,221 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,221 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,221 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,221 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,221 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,221 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,221 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,221 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,221 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,222 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,222 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,222 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,237 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,237 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,237 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,237 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,237 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_37022-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:05,237 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>
2013-10-16 19:48:05,237 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 146 Logical Axioms: 146]
2013-10-16 19:48:05,238 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_33709>)
2013-10-16 19:48:05,238 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,238 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,247 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>)))
2013-10-16 19:48:05,247 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:05,247 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,247 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,247 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,247 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,248 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,248 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,248 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,248 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,248 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,248 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,248 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,248 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,248 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,249 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,249 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,249 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,249 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,249 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,249 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,249 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,249 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,249 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,250 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,264 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,264 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,264 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,264 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,265 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,265 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,265 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>)))
2013-10-16 19:48:05,265 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>)))
2013-10-16 19:48:05,265 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,265 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,265 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,265 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,265 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,266 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,266 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,266 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,266 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,266 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,266 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,266 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,266 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,266 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,267 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,267 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,267 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,267 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,267 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,267 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,267 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,267 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,267 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,268 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,282 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,282 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,282 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,282 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,282 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,282 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,283 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>)))
2013-10-16 19:48:05,283 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,283 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,283 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,283 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,283 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,283 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,283 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,295 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,295 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,296 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,296 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,296 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,296 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,296 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,296 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,296 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,296 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,297 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,297 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,297 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,297 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,297 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,297 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,297 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,313 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:05,313 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,313 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,313 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,313 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33709> // src=<http://purl.obolibrary.org/obo/CHEBI_37022-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 19:48:05,314 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 148 Logical Axioms: 148]
2013-10-16 19:48:05,314 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:05,314 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,314 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,323 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:05,323 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,323 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,323 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,323 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,323 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,324 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,324 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,324 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,324 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,324 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,324 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,325 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,325 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,325 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,331 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:05,331 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,332 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,332 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,332 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,332 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,332 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,332 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,332 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,347 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,347 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,347 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,347 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,347 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,347 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,348 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,348 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,348 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,353 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 5 ms
2013-10-16 19:48:05,353 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,353 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,353 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,354 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,354 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,354 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,354 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,354 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,354 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,354 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,354 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,355 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,355 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,355 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,355 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,355 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,355 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,355 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,355 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,355 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,369 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,370 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,370 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,370 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,370 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,370 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,370 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,370 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,370 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,371 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,371 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,371 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,377 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:05,389 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,389 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,389 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,389 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,390 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,390 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,390 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,390 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,390 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,390 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,390 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,390 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,390 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,391 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,391 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,391 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,391 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,406 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,406 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,406 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,406 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,406 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_37022-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:05,406 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>
2013-10-16 19:48:05,407 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 149 Logical Axioms: 149]
2013-10-16 19:48:05,407 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 19:48:05,407 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,407 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,416 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:05,416 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,416 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,416 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,416 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,416 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,417 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,417 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,417 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,417 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,417 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,417 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,417 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,417 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,417 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,424 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:05,424 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,424 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,424 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,424 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,425 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,425 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,425 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,425 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,439 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,439 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,440 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,440 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,440 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,440 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,440 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,440 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,440 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,441 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,441 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,441 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,441 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,441 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,441 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,441 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,441 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,442 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,442 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,442 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,442 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,442 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,442 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,442 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,442 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,442 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,443 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,443 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,443 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,443 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,457 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,457 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,458 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,458 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,458 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,458 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,458 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,458 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,458 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,458 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,459 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,459 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,465 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:05,477 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,477 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,477 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,477 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,477 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,477 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,478 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,478 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,478 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,478 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,478 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,478 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,478 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,478 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,478 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,479 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,479 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,493 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,494 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,494 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,494 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,494 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_37022-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:05,494 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>
2013-10-16 19:48:05,494 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 151 Logical Axioms: 151]
2013-10-16 19:48:05,494 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 19:48:05,495 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,495 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,503 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:05,503 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,504 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,504 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,504 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,504 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,504 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,504 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,504 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,504 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,505 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,505 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,505 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,505 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,505 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,511 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:05,511 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,511 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,512 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,512 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,512 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,512 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,512 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,512 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,527 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,527 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,527 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,527 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,527 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,527 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,527 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,528 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,528 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,528 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,528 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,528 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,528 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,528 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,528 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,528 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,528 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,529 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,529 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,529 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,529 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,529 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,529 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,529 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,529 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,529 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,530 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,530 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,530 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,530 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,544 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,544 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,545 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,545 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,545 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,545 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,545 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,545 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,545 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,545 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,546 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,546 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,552 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:05,563 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,563 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,564 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,564 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,564 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,564 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,564 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,564 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,564 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,564 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,564 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,565 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,565 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,565 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,565 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,565 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,565 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,580 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,580 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,580 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,580 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,581 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_37022-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:05,581 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>
2013-10-16 19:48:05,581 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 153 Logical Axioms: 153]
2013-10-16 19:48:05,581 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 19:48:05,581 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,581 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,590 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:05,590 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,590 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,590 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,590 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,591 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,591 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,591 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,591 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,591 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,591 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,591 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,591 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,591 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,592 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,598 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:05,598 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,598 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,598 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,598 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,598 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,599 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,599 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,599 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,613 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,613 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,614 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,614 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,614 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,614 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,614 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,614 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,614 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,615 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,615 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,615 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,615 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,615 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,615 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,615 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,615 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,615 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,616 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,616 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,616 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,616 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,616 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,616 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,616 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,616 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,616 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,616 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,616 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,617 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,631 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,631 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,631 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,631 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,631 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,631 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,632 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,632 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,632 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,632 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,632 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,632 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,638 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:05,650 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,650 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,650 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,650 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,651 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,651 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,651 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,651 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,651 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,651 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,651 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,651 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,651 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,652 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,652 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,652 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,652 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,667 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,667 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,667 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,667 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,667 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:05,667 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 19:48:05,668 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 155 Logical Axioms: 155]
2013-10-16 19:48:05,668 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 19:48:05,668 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,668 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,677 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:05,677 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,677 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,677 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,677 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,677 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,677 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,678 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,678 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,678 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,678 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,678 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,678 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,678 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,678 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,685 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:05,685 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,685 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,685 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,685 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,685 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,685 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,686 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,686 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,700 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,700 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,700 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,700 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,701 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,701 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,701 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,701 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,701 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,701 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,701 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,702 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,702 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,702 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,702 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,702 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,702 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,702 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,702 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,702 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,703 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,703 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,703 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,703 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,703 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,703 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,703 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,703 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,703 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,703 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,718 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,718 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,718 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,718 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,718 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,718 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,719 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,719 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,719 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,719 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,719 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,719 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,725 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:05,736 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,737 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,737 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,737 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,737 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,737 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,737 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,737 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,738 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,738 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,738 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,738 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,738 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,738 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,738 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,738 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,738 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,753 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,753 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,753 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,753 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,754 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:05,754 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 19:48:05,754 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 157 Logical Axioms: 157]
2013-10-16 19:48:05,754 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 19:48:05,754 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,754 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,763 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:05,763 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,763 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,764 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,764 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,764 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,764 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,764 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,764 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,764 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,764 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,764 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,765 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,765 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,765 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,771 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:05,771 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,771 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,771 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,771 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,772 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,772 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,772 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,772 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,786 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,786 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,786 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,787 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,787 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,787 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,787 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,787 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,787 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,787 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,788 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,788 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,788 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,788 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,793 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,793 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,793 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,793 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,793 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,794 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,794 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,794 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,794 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,794 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,794 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,794 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,794 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,794 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,794 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,795 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,809 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,809 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,809 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,809 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,809 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,809 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,809 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,810 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,810 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,810 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,810 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,810 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,816 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:05,827 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,828 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,828 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,828 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,828 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,828 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,828 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,828 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,829 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,829 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,829 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,829 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,829 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,829 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,829 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,829 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,829 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,844 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,844 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,844 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,844 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,845 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_33708-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:05,845 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33708-proto>
2013-10-16 19:48:05,845 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33708-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33708-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 159 Logical Axioms: 159]
2013-10-16 19:48:05,845 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:05,845 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,845 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,854 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:05,854 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,854 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,855 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,855 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,855 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,855 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,855 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,855 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,855 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,855 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,856 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,856 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,856 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,856 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,862 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:05,862 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,862 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,863 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,863 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,863 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,863 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,863 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,863 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,878 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,878 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,878 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,878 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,878 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,878 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,878 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,879 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,879 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,879 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,879 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,879 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,879 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,879 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,879 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,879 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,880 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,880 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,880 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,880 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,880 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,880 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,880 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,880 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,880 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,880 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,880 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,881 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,881 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,881 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,896 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:05,896 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,896 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,896 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,896 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,897 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,897 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,897 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,897 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,897 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,897 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,897 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,904 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:05,915 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,916 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,916 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,916 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,916 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,916 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,916 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,917 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,917 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,917 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,917 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,917 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,917 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,917 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,917 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,917 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,918 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,932 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,933 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,933 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,933 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,933 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:05,933 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 19:48:05,933 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 161 Logical Axioms: 161]
2013-10-16 19:48:05,933 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_60466>)
2013-10-16 19:48:05,933 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,934 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,942 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:48:05,942 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:05,943 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,943 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,943 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,943 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,943 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,943 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,943 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,943 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,943 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,944 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,944 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,944 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,944 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,944 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,944 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,944 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,944 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,944 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,945 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,945 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,945 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,945 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,945 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,960 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,960 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,960 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,960 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,960 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,960 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,960 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:48:05,961 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:48:05,961 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,961 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,961 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,961 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,961 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,961 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,961 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,961 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,961 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,962 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,962 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,962 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,962 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,962 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,962 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,962 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,962 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,962 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,962 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,963 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,963 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,963 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,963 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,963 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:05,977 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:05,977 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:05,977 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:05,978 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:05,978 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:05,978 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:05,978 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 19:48:05,978 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:05,978 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:05,978 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:05,978 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:05,978 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:05,978 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:05,979 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:05,990 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:05,990 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:05,990 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:05,990 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:05,990 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:05,991 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:05,991 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:05,991 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:05,991 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:05,991 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:05,991 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:05,991 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:05,991 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:05,991 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:05,992 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:05,992 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:05,992 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,007 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:06,007 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,007 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,007 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,007 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_60466> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 19:48:06,008 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_60466> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 163 Logical Axioms: 163]
2013-10-16 19:48:06,008 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 19:48:06,008 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 164 Logical Axioms: 164]
2013-10-16 19:48:06,008 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,008 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,017 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:06,018 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,018 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,018 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,018 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,018 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,018 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,018 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,019 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,019 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,019 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,019 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,019 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,019 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,019 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,028 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 8 ms
2013-10-16 19:48:06,028 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,028 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,028 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,029 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,029 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,029 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,029 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,029 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,043 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,044 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,044 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,044 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,044 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:06,044 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:06,046 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 2 ms
2013-10-16 19:48:06,047 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_60466-proto> is 29
2013-10-16 19:48:06,047 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_60466-proto> is 11
2013-10-16 19:48:06,047 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16670>)
2013-10-16 19:48:06,047 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,047 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,047 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 19:48:06,047 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,048 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,048 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,048 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,048 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,048 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,048 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,048 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,048 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,048 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,049 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,049 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,049 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,049 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,049 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,049 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,049 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,049 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,049 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,049 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,050 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,050 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,050 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,050 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,064 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,064 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,064 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,065 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,065 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,065 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,065 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 19:48:06,065 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 19:48:06,065 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,065 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,065 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,066 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,066 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,066 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,066 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,066 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,066 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,066 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,066 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,066 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,067 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,067 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,067 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,067 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,067 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,067 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,067 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,067 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,067 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,067 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,067 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,068 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,082 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,082 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,082 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,082 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,082 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,082 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,082 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 19:48:06,083 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,083 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,083 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,083 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,083 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,083 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,083 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,094 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,094 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,094 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,094 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,095 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,095 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,095 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,095 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,095 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,095 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,095 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,095 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,095 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,095 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,096 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,096 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,096 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,111 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,111 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,111 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,111 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,111 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16670> // src=<http://purl.obolibrary.org/obo/CHEBI_60466-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 19:48:06,111 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 165 Logical Axioms: 165]
2013-10-16 19:48:06,111 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_60466>)
2013-10-16 19:48:06,111 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,112 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,120 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 19:48:06,120 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:06,120 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,120 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,120 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,121 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,121 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,121 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,121 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,121 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,121 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,121 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,121 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,122 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,122 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,122 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,122 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,122 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,122 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,122 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,122 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,122 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,122 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,123 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,123 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,137 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,137 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,137 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,137 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,138 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,138 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,138 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 19:48:06,138 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 19:48:06,138 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,138 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,138 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,138 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,138 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,139 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,139 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,139 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,139 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,139 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,139 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,139 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,139 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,140 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,140 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,140 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,140 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,140 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,140 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,140 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,140 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,140 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,140 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,140 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,155 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,155 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,155 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,155 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,156 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,156 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,156 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 19:48:06,156 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,156 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,156 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,156 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,156 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,156 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,157 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,168 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,168 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,169 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,169 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,169 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,169 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,169 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,169 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,169 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,169 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,169 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,170 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,170 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,170 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,170 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,170 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,170 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,185 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:06,185 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,185 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,186 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,186 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_60466> // src=<http://purl.obolibrary.org/obo/CHEBI_60466-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 19:48:06,186 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 166 Logical Axioms: 166]
2013-10-16 19:48:06,186 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 19:48:06,186 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,186 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,195 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:06,195 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,196 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,196 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,196 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,196 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,196 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,196 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,196 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,196 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,197 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,197 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,197 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,197 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,197 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,204 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:06,204 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,204 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,204 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,204 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,204 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,204 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,204 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,205 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,219 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,219 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,219 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,220 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,220 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,220 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,220 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,220 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,220 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,220 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,221 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,221 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,221 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,221 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,221 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,221 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,221 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,221 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,221 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,222 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,222 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,222 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,222 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,222 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,222 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,222 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,222 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,222 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,222 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,222 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,237 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,237 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,237 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,237 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,237 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,237 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,238 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,238 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,238 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,238 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,238 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,238 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,244 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:06,255 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,255 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,256 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,256 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,256 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,256 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,256 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,256 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,256 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,256 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,257 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,262 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 5 ms
2013-10-16 19:48:06,262 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,262 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,263 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,263 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,263 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,277 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,278 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,278 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,278 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,278 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_60466-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:06,278 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 19:48:06,278 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 167 Logical Axioms: 167]
2013-10-16 19:48:06,278 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 19:48:06,279 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,279 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,287 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:06,288 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,288 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,288 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,288 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,288 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,288 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,288 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,289 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,289 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,289 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,289 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,289 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,289 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,289 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,296 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:06,296 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,296 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,296 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,296 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,296 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,296 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,297 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,297 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,311 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,311 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,311 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,311 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,311 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,312 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,312 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,312 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,312 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,312 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,312 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,312 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,312 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,313 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,313 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,313 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,313 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,313 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,313 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,313 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,313 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,313 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,313 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,314 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,314 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,314 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,314 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,314 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,314 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,314 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,328 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,328 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,329 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,329 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,329 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,329 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,329 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,329 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,329 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,329 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,330 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,330 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,336 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:06,347 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,347 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,348 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,348 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,348 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,348 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,348 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,348 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,348 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,348 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,348 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,349 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,349 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,349 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,349 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,349 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,349 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,364 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,364 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,364 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,364 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,364 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_60466-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:06,365 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 19:48:06,365 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 169 Logical Axioms: 169]
2013-10-16 19:48:06,365 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23004>)
2013-10-16 19:48:06,365 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,365 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,374 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:06,374 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,374 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,374 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,374 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,374 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,375 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,375 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,375 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,375 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,375 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,375 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,375 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,375 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,375 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,382 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:06,382 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,382 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,382 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,382 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,382 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,382 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,383 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,383 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,397 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,397 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,397 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,398 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,398 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,398 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,398 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,398 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,398 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,398 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,398 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,398 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,399 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,399 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,399 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,399 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,399 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,399 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,399 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,399 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,399 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,400 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,400 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,400 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,400 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,400 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,400 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,400 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,400 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,400 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,415 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,415 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,415 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,416 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,416 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,416 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,416 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,416 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,416 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,416 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,416 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,416 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,423 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:06,434 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,434 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,434 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,434 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,435 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,435 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,435 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,435 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,435 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,435 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,435 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,435 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,435 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,435 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,436 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,436 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,436 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,450 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,451 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,451 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,451 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,451 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_23004> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:06,451 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_23004> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 171 Logical Axioms: 171]
2013-10-16 19:48:06,451 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_23004-proto>
2013-10-16 19:48:06,451 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 19:48:06,452 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 172 Logical Axioms: 172]
2013-10-16 19:48:06,452 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,452 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,461 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:06,461 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,461 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,461 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,461 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,461 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,462 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,462 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,462 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,462 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,462 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,462 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,462 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,462 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,462 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,468 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:06,469 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,469 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,469 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,469 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,469 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,469 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,470 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,470 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,486 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:48:06,486 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,486 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,486 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,486 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:06,487 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:06,487 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:06,487 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_23004-proto> is 16
2013-10-16 19:48:06,487 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_23004-proto> is 8
2013-10-16 19:48:06,487 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 19:48:06,487 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,488 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,488 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,488 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,488 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,488 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,488 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,488 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,488 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,488 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,489 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,489 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,489 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,489 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,489 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,489 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,489 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,496 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:06,496 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,496 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,496 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,496 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,496 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,497 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,497 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,497 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,511 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,512 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,512 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,512 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,512 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,512 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,512 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,513 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,513 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,513 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,513 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,513 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,513 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,513 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,513 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,513 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,514 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,514 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,514 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,514 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,514 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,514 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,514 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,514 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,514 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,515 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,515 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,515 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,515 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,515 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,531 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:06,531 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,531 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,531 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,532 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,532 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,532 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,532 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,532 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,532 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,532 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,532 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,539 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:06,551 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,551 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,551 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,551 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,551 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,551 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,551 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,552 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,552 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,552 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,552 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,552 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,552 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,552 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,552 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,552 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,552 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,568 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:06,568 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,568 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,568 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,568 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_23004-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:06,568 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>
2013-10-16 19:48:06,569 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 174 Logical Axioms: 174]
2013-10-16 19:48:06,569 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_28616>)
2013-10-16 19:48:06,569 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,569 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,578 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>)))
2013-10-16 19:48:06,578 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:06,578 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,578 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,578 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,579 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,579 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,579 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,579 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,579 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,579 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,579 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,579 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,580 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,580 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,580 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,580 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,580 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,580 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,580 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,580 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,580 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,581 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,581 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,581 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,596 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:06,596 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,596 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,596 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,596 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,597 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,597 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>)))
2013-10-16 19:48:06,597 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>)))
2013-10-16 19:48:06,597 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,597 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,597 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,597 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,597 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,597 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,598 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,598 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,598 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,598 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,598 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,598 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,598 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,598 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,598 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,599 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,599 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,599 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,599 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,599 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,599 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,599 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,599 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,599 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,614 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,614 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,614 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,614 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,614 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,614 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,615 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>)))
2013-10-16 19:48:06,615 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,615 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,615 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,615 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,615 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,615 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,615 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,627 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,627 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,627 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,627 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,628 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,628 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,628 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,628 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,628 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,628 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,628 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,628 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,628 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,629 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,629 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,629 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,629 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,643 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,644 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,644 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,644 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,644 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_28616> // src=<http://purl.obolibrary.org/obo/CHEBI_23004-proto> via <http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>
2013-10-16 19:48:06,644 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_28616> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 176 Logical Axioms: 176]
2013-10-16 19:48:06,644 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:06,644 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 177 Logical Axioms: 177]
2013-10-16 19:48:06,645 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,645 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,654 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:06,654 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,654 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,654 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,655 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,655 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,655 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,655 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,655 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,655 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,655 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,655 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,656 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,656 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,656 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,662 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:06,662 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,662 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,663 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,663 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,663 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,663 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,663 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,663 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,678 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,678 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,678 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,678 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,678 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:06,678 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:06,679 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:06,679 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_28616-proto> is 62
2013-10-16 19:48:06,679 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_28616-proto> is 25
2013-10-16 19:48:06,680 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_43176>)
2013-10-16 19:48:06,680 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,680 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,680 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,681 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,681 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,681 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,681 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,681 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,681 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,681 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,681 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,681 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,682 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,682 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,682 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,682 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,682 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,688 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:06,689 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,689 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,689 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,689 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,689 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,689 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,689 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,689 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,704 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,704 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,704 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,704 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,704 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,704 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,705 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,705 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,705 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,710 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 4 ms
2013-10-16 19:48:06,710 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,710 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,710 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,710 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,710 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,710 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,711 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,711 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,711 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,711 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,711 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,711 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,711 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,711 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,711 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,711 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,712 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,712 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,712 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,712 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,726 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,726 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,726 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,727 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,727 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,727 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,727 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,727 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,727 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,727 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,727 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,727 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,734 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:06,746 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,746 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,746 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,746 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,746 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,747 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,747 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,747 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,747 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,747 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,747 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,747 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,747 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,747 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,748 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,748 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,748 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,763 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:06,763 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,764 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,764 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,764 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_43176> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:06,764 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:06,764 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 178 Logical Axioms: 178]
2013-10-16 19:48:06,764 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46883>)
2013-10-16 19:48:06,764 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,764 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,773 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:06,774 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,774 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,774 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,774 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,774 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,774 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,774 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,775 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,775 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,775 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,775 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,775 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,775 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,775 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,781 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:06,781 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,782 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,782 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,782 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,782 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,782 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,782 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,782 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,797 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,797 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,797 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,797 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,797 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,797 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,798 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,798 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,798 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,798 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,798 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,798 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,798 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,798 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,799 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,799 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,799 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,799 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,799 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,799 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,799 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,799 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,799 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,800 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,800 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,800 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,800 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,800 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,800 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,800 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,814 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,814 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,814 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,815 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,815 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,815 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,815 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,815 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,815 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,815 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,815 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,816 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,822 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:06,833 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,833 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,833 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,833 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,834 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,834 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,834 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,834 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,834 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,834 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,834 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,834 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,835 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,835 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,835 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,835 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,835 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,850 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,850 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,850 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,850 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,850 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46883> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:06,850 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:06,851 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 180 Logical Axioms: 180]
2013-10-16 19:48:06,851 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 19:48:06,851 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,851 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,860 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:06,860 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:06,860 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,860 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,861 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,861 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,861 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,861 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,861 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,861 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,861 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,861 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,861 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,862 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,862 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,862 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,862 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,862 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,862 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,862 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,862 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,862 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,863 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,863 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,863 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,877 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,877 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,877 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,877 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,877 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,878 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,878 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:06,878 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:06,878 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,878 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,878 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,878 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,878 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,878 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,879 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,879 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,879 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,879 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,879 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,879 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,879 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,879 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,879 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,880 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,880 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,880 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,880 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,880 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,880 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,880 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,880 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,880 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,895 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,895 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,895 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,895 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,895 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,895 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,896 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:06,896 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,896 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,896 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,896 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,896 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,896 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,896 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,908 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,909 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,909 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,909 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,909 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,909 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,909 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,909 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,909 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,910 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,910 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,910 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,910 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,910 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,910 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,910 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,910 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,925 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,925 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,925 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,925 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,926 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/chebi#has_parent_hydride>
2013-10-16 19:48:06,926 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 182 Logical Axioms: 182]
2013-10-16 19:48:06,926 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_13941>)
2013-10-16 19:48:06,926 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,926 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,935 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:06,935 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:06,935 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,935 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,935 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,936 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,936 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,936 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,936 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,936 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,936 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,936 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,936 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,936 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,936 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,937 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,937 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,937 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,937 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,937 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,937 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,937 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,937 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,937 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,937 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,952 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,952 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,952 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,952 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,952 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,952 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,952 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:06,953 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:06,953 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,953 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,953 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,953 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,953 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,953 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,953 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,954 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,954 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,954 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,954 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,954 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,954 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,954 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,954 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,955 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,955 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,955 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,955 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,955 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,955 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,955 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,955 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,955 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:06,970 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:06,970 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:06,970 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:06,970 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:06,971 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:06,971 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:06,971 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:06,971 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:06,971 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:06,971 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:06,971 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:06,971 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:06,971 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:06,972 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:06,983 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:06,983 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:06,983 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:06,983 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:06,984 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:06,984 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:06,984 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:06,984 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:06,984 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:06,984 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:06,984 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:06,984 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:06,984 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:06,985 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:06,985 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:06,985 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:06,985 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,000 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,000 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,000 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,000 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,000 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_13941> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 19:48:07,000 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_13941> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 183 Logical Axioms: 183]
2013-10-16 19:48:07,000 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:07,001 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 184 Logical Axioms: 184]
2013-10-16 19:48:07,001 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,001 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,010 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:07,010 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,010 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,010 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,010 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,011 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,011 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,011 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,011 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,011 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,011 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,011 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,012 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,012 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,012 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,018 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:07,018 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,018 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,019 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,019 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,019 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,020 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,020 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,020 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,034 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,034 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,034 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,034 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,034 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:07,035 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:07,035 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:07,035 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_13941-proto> is 47
2013-10-16 19:48:07,035 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_13941-proto> is 16
2013-10-16 19:48:07,036 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_28616>)
2013-10-16 19:48:07,036 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,036 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,036 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>)))
2013-10-16 19:48:07,036 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,037 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,037 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,037 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,037 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,037 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,037 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,037 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,038 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,038 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,038 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,038 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,038 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,038 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,039 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,039 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,039 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,039 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,039 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,039 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,039 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,040 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,040 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,040 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,054 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,054 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,055 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,055 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,055 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,055 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,055 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>)))
2013-10-16 19:48:07,055 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>)))
2013-10-16 19:48:07,055 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,055 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,055 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,056 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,056 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,056 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,056 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,056 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,056 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,056 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,057 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,057 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,057 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,057 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,057 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,057 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,057 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,057 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,057 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,058 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,058 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,058 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,058 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,058 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,075 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:48:07,075 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,075 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,075 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,075 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,075 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,076 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>)))
2013-10-16 19:48:07,076 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,076 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,076 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,076 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,076 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,076 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,077 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,089 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,090 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,090 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,090 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,090 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,090 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,090 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,090 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,090 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,091 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,091 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,091 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,091 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,091 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,091 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,091 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,091 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,107 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:07,107 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,107 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,107 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,107 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_28616> // src=<http://purl.obolibrary.org/obo/CHEBI_13941-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 19:48:07,107 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 185 Logical Axioms: 185]
2013-10-16 19:48:07,108 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 19:48:07,108 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,108 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,117 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:07,117 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,117 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,117 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,117 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,117 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,117 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,117 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,118 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,118 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,118 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,118 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,118 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,118 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,118 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,124 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:07,125 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,125 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,125 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,125 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,125 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,125 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,125 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,125 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,140 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,140 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,140 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,140 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,140 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,140 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,141 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,141 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,141 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,141 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,141 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,141 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,141 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,141 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,141 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,141 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,141 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,142 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,142 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,142 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,142 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,142 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,142 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,142 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,142 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,142 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,142 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,142 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,143 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,143 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,157 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,157 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,157 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,157 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,157 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,157 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,158 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,158 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,158 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,158 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,158 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,158 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,164 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:07,176 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,176 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,177 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,177 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,177 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,177 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,177 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,177 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,177 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,177 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,177 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,182 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 4 ms
2013-10-16 19:48:07,182 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,182 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,182 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,182 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,182 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,197 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:07,198 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,198 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,198 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,198 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_13941-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:07,198 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:07,198 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 186 Logical Axioms: 186]
2013-10-16 19:48:07,198 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:07,199 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,199 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,207 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:07,207 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,208 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,208 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,208 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,208 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,208 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,208 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,208 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,208 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,208 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,209 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,209 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,209 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,209 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,215 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:07,215 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,215 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,216 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,216 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,216 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,216 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,216 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,216 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,230 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,230 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,231 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,231 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,231 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,231 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,231 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,231 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,231 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,232 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,232 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,232 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,232 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,232 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,232 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,232 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,232 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,232 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,232 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,233 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,233 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,233 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,233 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,233 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,233 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,233 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,233 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,233 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,233 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,233 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,248 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,248 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,248 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,248 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,248 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,248 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,249 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,249 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,249 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,249 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,249 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,249 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,255 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:07,267 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,267 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,268 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,268 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,268 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,268 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,268 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,268 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,268 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,268 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,268 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,268 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,269 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,269 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,269 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,269 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,269 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,284 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,284 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,284 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,284 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,284 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_13941-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:07,284 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:07,284 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 188 Logical Axioms: 188]
2013-10-16 19:48:07,285 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 19:48:07,285 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,285 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,294 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:07,294 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,294 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,294 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,294 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,294 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,294 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,294 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,294 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,295 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,295 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,295 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,295 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,295 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,295 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,301 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:07,302 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,302 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,302 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,302 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,302 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,302 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,302 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,302 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,316 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,317 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,317 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,317 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,317 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,317 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,317 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,317 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,317 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,318 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,318 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,318 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,318 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,318 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,318 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,318 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,318 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,318 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,319 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,319 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,319 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,319 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,319 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,319 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,319 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,319 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,319 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,319 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,319 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,320 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,334 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,334 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,334 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,334 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,334 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,334 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,335 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,335 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,335 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,335 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,335 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,335 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,341 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:07,352 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,353 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,353 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,353 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,353 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,353 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,353 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,354 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,354 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,354 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,354 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,354 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,354 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,354 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,354 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,354 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,354 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,369 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,369 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,369 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,370 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,370 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_13941-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:07,370 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:07,370 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 190 Logical Axioms: 190]
2013-10-16 19:48:07,370 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 19:48:07,370 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,371 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,382 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 11 ms
2013-10-16 19:48:07,382 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,382 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,382 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,382 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,382 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,382 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,383 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,383 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,383 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,383 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,383 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,383 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,383 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,383 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,390 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:07,390 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,390 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,390 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,390 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,390 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,390 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,391 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,391 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,406 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:07,406 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,407 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,407 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,407 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,407 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,407 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,407 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,407 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,407 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,408 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,408 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,408 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,408 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,408 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,408 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,408 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,408 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,408 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,409 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,409 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,409 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,409 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,409 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,409 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,409 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,409 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,409 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,409 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,409 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,424 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,424 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,424 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,424 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,424 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,424 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,425 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,425 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,425 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,425 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,425 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,425 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,431 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:07,442 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,443 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,443 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,443 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,443 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,443 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,443 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,443 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,444 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,444 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,444 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,444 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,444 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,444 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,444 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,444 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,444 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,459 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,459 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,459 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,460 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,460 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_13941-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:07,460 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:07,460 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 192 Logical Axioms: 192]
2013-10-16 19:48:07,460 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 19:48:07,460 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,460 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,469 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:07,469 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,469 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,470 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,470 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,470 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,470 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,470 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,470 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,470 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,470 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,470 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,471 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,471 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,471 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,477 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:07,477 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,477 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,477 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,477 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,478 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,478 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,478 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,478 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,492 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,492 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,492 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,493 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,493 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,493 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,493 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,493 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,493 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,493 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,493 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,493 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,494 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,494 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,494 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,494 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,494 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,494 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,494 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,494 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,494 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,494 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,495 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,495 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,495 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,495 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,495 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,495 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,495 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,495 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,509 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,510 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,510 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,510 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,510 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,510 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,510 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,510 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,510 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,510 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,510 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,511 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,517 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:07,529 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,529 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,529 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,529 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,529 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,530 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,530 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,530 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,530 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,530 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,530 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,530 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,530 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,530 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,531 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,531 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,531 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,545 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,546 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,546 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,546 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,546 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:07,546 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:07,546 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 194 Logical Axioms: 194]
2013-10-16 19:48:07,547 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46629>)
2013-10-16 19:48:07,547 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,547 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,556 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:07,556 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,556 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,557 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,557 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,557 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,557 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,557 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,557 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,557 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,557 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,557 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,558 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,558 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,558 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,564 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 19:48:07,564 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,564 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,564 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,564 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,564 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,564 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,565 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,565 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,580 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:07,580 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,580 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,580 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,580 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,580 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,581 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,581 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,581 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,581 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,581 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,581 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,581 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,581 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,581 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,581 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,582 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,582 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,582 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,582 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,582 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,582 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,582 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,582 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,582 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,582 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,582 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,583 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,583 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,583 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,597 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,597 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,597 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,597 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,598 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,598 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,598 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,598 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,598 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,598 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,598 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,599 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,605 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:07,616 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,616 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,617 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,617 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,617 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,617 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,617 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,617 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,617 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,617 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,617 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,618 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,618 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,618 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,618 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,618 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,618 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,633 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,633 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,633 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,633 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,633 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46629> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:07,633 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:07,638 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 196 Logical Axioms: 196]
2013-10-16 19:48:07,638 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23019>)
2013-10-16 19:48:07,638 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,638 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,648 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:07,648 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,648 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,648 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,648 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,648 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,649 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,649 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,649 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,649 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,649 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,649 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,649 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,649 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,649 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,656 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:07,656 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,656 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,656 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,656 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,656 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,656 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,657 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,657 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,671 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,671 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,671 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,672 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,672 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,672 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,672 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,672 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,672 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,672 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,672 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,673 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,673 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,673 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,673 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,673 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,673 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,673 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,673 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,673 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,673 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,674 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,674 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,674 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,674 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,674 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,674 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,674 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,674 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,674 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,689 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,689 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,689 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,689 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,689 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,689 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,690 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,690 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,690 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,690 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,690 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,690 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,696 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:07,708 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,708 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,708 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,709 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,709 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,709 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,709 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,709 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,709 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,709 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,709 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,709 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,709 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,709 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,710 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,710 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,710 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,724 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,725 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,725 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,725 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,725 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_23019> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:07,725 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:07,725 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 198 Logical Axioms: 198]
2013-10-16 19:48:07,725 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:07,725 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,725 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,735 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:07,735 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,735 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,735 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,735 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,735 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,735 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,735 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,735 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,736 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,736 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,736 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,736 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,736 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,736 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,743 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:07,743 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,743 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,743 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,743 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,743 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,743 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,743 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,743 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,758 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,758 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,758 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,758 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,759 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,759 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,759 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,759 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,759 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,759 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,759 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,759 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,760 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,760 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,760 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,760 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,760 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,760 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,760 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,760 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,761 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,761 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,761 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,761 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,761 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,761 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,761 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,761 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,761 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,761 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,776 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,776 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,776 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,776 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,776 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,776 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,776 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,776 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,777 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,777 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,777 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,777 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,783 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:07,795 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,795 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,795 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,795 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,795 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,796 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,796 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,796 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,796 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,796 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,796 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,796 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,796 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,796 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,796 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,797 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,797 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,811 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,811 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,812 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,812 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,812 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:07,812 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:07,812 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 200 Logical Axioms: 200]
2013-10-16 19:48:07,812 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_39141>)
2013-10-16 19:48:07,812 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,812 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,821 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:07,821 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:07,821 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,821 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,822 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,822 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,822 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,822 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,822 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,822 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,822 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,822 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,822 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,823 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,823 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,823 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,823 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,823 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,823 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,823 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,823 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,823 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,823 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,823 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,824 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,838 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,838 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,838 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,838 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,838 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,838 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,838 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:07,839 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:07,839 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,839 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,839 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,839 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,839 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,839 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,839 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,839 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,839 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,840 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,840 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,840 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,840 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,840 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,840 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,840 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,840 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,840 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,840 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,841 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,841 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,841 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,841 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,841 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,856 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,856 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,856 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,856 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,856 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,856 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,856 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 19:48:07,856 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,856 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,857 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,857 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,857 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,857 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,857 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,869 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,870 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,870 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,870 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,870 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,870 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,870 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,871 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,871 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,871 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,871 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,871 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,871 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,871 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,871 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,871 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,871 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,887 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:48:07,888 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,888 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,888 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,888 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_39141> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 19:48:07,888 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_39141-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 202 Logical Axioms: 202]
2013-10-16 19:48:07,888 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 19:48:07,888 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,889 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,898 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:07,898 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,898 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,899 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,899 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,899 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,899 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,899 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,899 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,899 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,899 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,900 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,900 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,900 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,900 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,906 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:07,906 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,906 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,906 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,907 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,907 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,907 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,907 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,907 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,922 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,922 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,922 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,922 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,922 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,922 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,923 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,923 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,923 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,923 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,923 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,923 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,923 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,924 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,924 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,924 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,924 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,924 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,924 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,924 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,924 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,924 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,924 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,925 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,925 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,925 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,925 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,925 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,925 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,925 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,939 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,939 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,939 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,940 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,940 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,940 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,940 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:07,940 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,940 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,940 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,940 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,941 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,947 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:07,958 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,959 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,959 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,959 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,959 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,959 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,959 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,959 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,960 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:07,960 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,960 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,960 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,960 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,960 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,960 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,960 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,960 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:07,975 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:07,975 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:07,975 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:07,975 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:07,976 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:07,976 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:07,976 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 203 Logical Axioms: 203]
2013-10-16 19:48:07,976 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 19:48:07,976 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:07,976 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:07,985 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:07,985 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:07,985 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:07,985 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:07,985 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:07,985 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:07,986 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:07,986 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:07,986 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:07,986 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:07,986 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:07,986 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:07,986 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:07,986 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:07,986 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:07,993 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:07,993 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:07,993 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:07,993 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:07,993 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:07,993 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:07,993 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:07,993 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:07,993 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,009 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:08,009 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,010 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,010 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,010 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,010 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,010 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,010 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,011 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,011 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,011 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,011 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,011 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,011 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,011 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,011 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,011 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,012 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,012 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,012 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,012 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,012 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,012 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,012 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,012 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,012 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,012 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,013 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,013 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,013 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,027 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,027 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,027 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,028 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,028 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,028 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,028 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,028 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,028 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,028 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,028 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,028 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,035 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:08,046 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,047 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,047 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,047 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,047 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,047 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,047 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,047 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,048 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,048 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,048 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,048 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,048 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,048 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,048 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,048 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,048 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,063 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:08,064 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,064 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,064 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,064 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:08,064 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:08,065 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 205 Logical Axioms: 205]
2013-10-16 19:48:08,065 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 19:48:08,065 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,065 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,078 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 12 ms
2013-10-16 19:48:08,078 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,078 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,078 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,078 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,078 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,079 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,079 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,079 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,079 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,079 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,079 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,079 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,079 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,080 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,086 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:08,086 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,086 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,086 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,087 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,087 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,087 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,087 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,087 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,101 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,101 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,101 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,102 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,102 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,102 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,102 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,102 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,102 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,102 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,102 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,103 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,103 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,103 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,103 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,103 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,103 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,103 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,103 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,103 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,104 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,104 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,104 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,104 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,104 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,104 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,104 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,104 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,104 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,104 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,120 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:08,120 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,120 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,120 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,120 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,120 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,120 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,121 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,121 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,121 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,121 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,121 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,127 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:08,139 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,139 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,139 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,140 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,140 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,140 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,140 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,140 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,140 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,140 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,140 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,140 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,140 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,140 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,141 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,141 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,141 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,155 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,155 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,156 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,156 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,156 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:08,156 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 19:48:08,156 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 207 Logical Axioms: 207]
2013-10-16 19:48:08,156 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33700>)
2013-10-16 19:48:08,156 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,156 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,166 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:08,166 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,166 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,166 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,166 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,166 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,166 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,167 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,167 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,167 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,167 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,167 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,167 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,167 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,167 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,173 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:08,173 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,174 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,174 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,174 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,174 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,174 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,174 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,174 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,188 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,189 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,189 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,189 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,189 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,189 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,189 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,189 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,189 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,190 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,190 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,190 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,190 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,190 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,190 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,190 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,190 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,190 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,190 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,191 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,191 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,191 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,191 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,191 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,191 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,191 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,191 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,191 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,191 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,191 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,206 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,206 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,206 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,206 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,206 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,206 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,206 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,207 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,207 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,207 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,207 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,207 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,213 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:08,224 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,225 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,225 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,225 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,225 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,225 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,225 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,225 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,225 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,226 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,226 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,226 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,226 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,226 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,226 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,226 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,226 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,241 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,241 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,241 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,241 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,241 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33700> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:08,242 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33700> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 209 Logical Axioms: 209]
2013-10-16 19:48:08,242 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 19:48:08,242 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:08,242 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 210 Logical Axioms: 210]
2013-10-16 19:48:08,242 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,242 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,252 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:08,252 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,252 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,252 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,252 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,252 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,252 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,252 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,252 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,253 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,253 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,253 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,253 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,253 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,253 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,260 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 19:48:08,261 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,261 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,261 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,261 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,261 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,263 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 1 ms
2013-10-16 19:48:08,263 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,263 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,277 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 19:48:08,277 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,277 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,277 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,277 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:08,277 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:08,278 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:08,278 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33700-proto> is 15
2013-10-16 19:48:08,278 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33700-proto> is 8
2013-10-16 19:48:08,278 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33704>)
2013-10-16 19:48:08,278 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,278 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,279 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>)))
2013-10-16 19:48:08,279 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,279 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,279 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,279 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,279 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,279 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,279 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,279 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,279 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,280 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,280 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,280 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,280 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,280 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,280 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,280 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,280 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,280 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,280 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,280 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,280 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,281 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,281 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,281 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,295 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,295 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,295 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,295 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,296 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,296 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,296 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>)))
2013-10-16 19:48:08,296 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>)))
2013-10-16 19:48:08,296 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,296 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,296 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,296 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,296 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,296 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,297 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,297 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,297 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,297 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,297 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,297 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,297 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,298 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,298 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,298 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,298 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,298 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,298 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,298 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,298 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,298 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,298 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,298 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,313 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,313 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,313 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,313 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,314 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,314 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,314 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>)))
2013-10-16 19:48:08,314 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,314 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,314 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,314 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,314 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,314 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,314 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,325 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,325 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,326 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,326 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,326 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,326 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,326 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,326 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,326 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,326 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,326 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,327 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,327 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,327 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,327 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,327 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,327 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,342 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:08,342 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,342 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,342 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,343 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33704> // src=<http://purl.obolibrary.org/obo/CHEBI_33700-proto> via <http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>
2013-10-16 19:48:08,343 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33704> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 212 Logical Axioms: 212]
2013-10-16 19:48:08,343 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:08,343 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 213 Logical Axioms: 213]
2013-10-16 19:48:08,343 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,343 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,352 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:08,352 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,352 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,352 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,353 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,353 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,353 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,353 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,353 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,353 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,353 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,353 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,353 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,353 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,354 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,360 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:08,360 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,360 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,361 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,361 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,361 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,361 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,361 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,361 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,376 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,376 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,376 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,376 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,376 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:08,376 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:08,376 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:08,377 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33704-proto> is 61
2013-10-16 19:48:08,377 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33704-proto> is 25
2013-10-16 19:48:08,378 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_33558>)
2013-10-16 19:48:08,378 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,378 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,378 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:08,378 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,378 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,378 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,378 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,378 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,379 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,379 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,379 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,379 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,379 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,379 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,379 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,379 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,379 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,379 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,380 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,380 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,380 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,380 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,380 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,380 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,380 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,380 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,380 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,394 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,395 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,395 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,395 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,395 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,395 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,395 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:08,395 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:08,395 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,395 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,395 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,396 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,396 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,396 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,396 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,396 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,396 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,396 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,396 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,396 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,397 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,397 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,397 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,397 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,397 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,397 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,397 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,397 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,397 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,397 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,397 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,398 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,413 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:08,413 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,413 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,413 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,413 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,413 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,413 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:08,413 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,413 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,413 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,414 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,414 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,414 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,414 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,426 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,426 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,426 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,427 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,427 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,427 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,427 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,427 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,427 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,427 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,427 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,427 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,427 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,427 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,428 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,428 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,428 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,443 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:08,443 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,444 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,444 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,444 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33558> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 19:48:08,444 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33558> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 214 Logical Axioms: 214]
2013-10-16 19:48:08,444 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 19:48:08,444 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 215 Logical Axioms: 215]
2013-10-16 19:48:08,444 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,444 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,453 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:08,453 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,454 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,454 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,454 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,454 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,454 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,454 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,454 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,454 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,454 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,454 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,455 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,455 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,455 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,461 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:08,462 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,462 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,462 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,462 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,462 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,462 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,462 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,462 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,477 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,477 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,477 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,477 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,477 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:08,477 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:08,477 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:08,478 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33558-proto> is 47
2013-10-16 19:48:08,478 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33558-proto> is 16
2013-10-16 19:48:08,478 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_33704>)
2013-10-16 19:48:08,478 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,479 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,479 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>)))
2013-10-16 19:48:08,479 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,479 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,479 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,479 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,479 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,479 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,479 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,480 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,480 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,480 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,480 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,480 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,480 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,480 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,480 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,480 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,480 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,481 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,481 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,481 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,481 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,481 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,481 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,481 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,495 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,495 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,496 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,496 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,496 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,496 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,496 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>)))
2013-10-16 19:48:08,496 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>)))
2013-10-16 19:48:08,496 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,497 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,497 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,497 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,497 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,497 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,497 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,497 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,497 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,498 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,498 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,498 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,498 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,498 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,498 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,498 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,499 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,499 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,499 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,499 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,499 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,499 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,499 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,499 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,514 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:08,515 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,515 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,515 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,515 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,515 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,515 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>)))
2013-10-16 19:48:08,515 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,515 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,515 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,520 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 4 ms
2013-10-16 19:48:08,520 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,521 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,521 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,532 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,532 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,533 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,533 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,533 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,533 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,533 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,533 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,533 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,533 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,533 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,534 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,534 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,534 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,534 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,534 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,534 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,549 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,549 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,549 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,549 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,549 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33704> // src=<http://purl.obolibrary.org/obo/CHEBI_33558-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 19:48:08,549 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 216 Logical Axioms: 216]
2013-10-16 19:48:08,550 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 19:48:08,550 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,550 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,558 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:08,559 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,559 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,559 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,559 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,559 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,559 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,559 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,559 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,560 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,560 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,560 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,560 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,560 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,560 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,566 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:08,566 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,567 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,567 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,567 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,567 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,567 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,567 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,567 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,581 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,582 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,582 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,582 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,582 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,582 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,582 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,582 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,582 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,583 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,583 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,583 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,583 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,583 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,583 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,583 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,583 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,583 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,583 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,584 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,584 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,584 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,584 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,584 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,584 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,584 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,584 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,584 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,584 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,584 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,599 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,599 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,599 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,599 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,599 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,599 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,599 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,599 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,599 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,600 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,600 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,600 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,606 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 19:48:08,617 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,617 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,618 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,618 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,618 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,618 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,618 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,618 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,618 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,618 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,618 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,618 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,619 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,619 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,619 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,619 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,619 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,634 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,634 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,634 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,634 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,634 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_33558-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:08,634 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 19:48:08,635 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 217 Logical Axioms: 217]
2013-10-16 19:48:08,635 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:08,635 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,635 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,644 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:08,644 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,644 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,644 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,644 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,644 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,645 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,645 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,645 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,645 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,645 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,645 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,645 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,645 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,645 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,652 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:08,652 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,652 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,652 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,652 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,652 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,652 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,652 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,652 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,667 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,667 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,667 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,667 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,667 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,667 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,668 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,668 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,668 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,668 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,668 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,668 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,668 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,668 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,668 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,668 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,668 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,669 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,669 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,669 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,669 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,669 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,669 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,669 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,669 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,669 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,669 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,669 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,670 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,670 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,684 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,684 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,684 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,684 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,685 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,685 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,685 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,685 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,685 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,685 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,685 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,685 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,691 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:08,703 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,703 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,703 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,704 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,704 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,704 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,704 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,704 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,704 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,704 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,704 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,705 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,705 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,705 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,705 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,705 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,705 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,719 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,720 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,720 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,720 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,720 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_33558-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:08,720 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 19:48:08,720 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 219 Logical Axioms: 219]
2013-10-16 19:48:08,720 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 19:48:08,721 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,721 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,729 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:08,729 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,730 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,730 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,730 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,730 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,730 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,730 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,730 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,730 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,730 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,731 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,731 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,731 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,731 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,737 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:08,737 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,737 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,738 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,738 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,738 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,738 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,738 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,738 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,752 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,753 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,753 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,753 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,753 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,753 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,753 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,753 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,753 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,754 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,754 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,754 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,754 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,754 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,754 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,754 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,754 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,754 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,754 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,755 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,755 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,755 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,755 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,755 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,755 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,755 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,755 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,755 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,755 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,755 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,770 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,770 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,770 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,770 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,770 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,770 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,770 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,770 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,770 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,771 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,771 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,771 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,777 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:08,788 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,788 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,789 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,789 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,789 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,789 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,789 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,789 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,789 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,789 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,790 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,790 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,790 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,790 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,790 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,790 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,790 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,804 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,805 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,805 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,805 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,805 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_33558-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:08,805 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 19:48:08,805 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 221 Logical Axioms: 221]
2013-10-16 19:48:08,805 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 19:48:08,805 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,806 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,814 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:08,815 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,815 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,815 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,815 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,815 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,815 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,815 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,815 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,815 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,815 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,816 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,816 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,816 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,816 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,822 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:08,822 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,822 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,822 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,823 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,823 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,823 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,823 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,823 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,837 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,837 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,837 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,837 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,838 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,838 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,838 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,838 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,838 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,838 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,838 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,838 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,838 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,838 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,839 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,839 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,839 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,839 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,839 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,839 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,839 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,839 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,839 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,839 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,840 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,840 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,840 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,840 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,840 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,840 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,854 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,854 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,854 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,854 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,854 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,854 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,855 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,855 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,855 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,855 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,855 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,855 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,861 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 19:48:08,873 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,873 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,874 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,874 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,874 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,874 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,874 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,874 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,874 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,874 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,874 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,874 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,874 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,875 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,875 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,875 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,875 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,890 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,890 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,890 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,890 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,890 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_33558-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:08,890 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 19:48:08,891 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 223 Logical Axioms: 223]
2013-10-16 19:48:08,891 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_43176>)
2013-10-16 19:48:08,891 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,891 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,900 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:08,900 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,900 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,900 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,900 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,900 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,900 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,901 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,901 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,901 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,901 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,901 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,901 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,901 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,901 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,907 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:08,908 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,908 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,908 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,908 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,908 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,908 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,908 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,908 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,922 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,923 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,923 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,923 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,923 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,923 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,923 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,923 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,923 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,924 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,924 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,924 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,924 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,924 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,924 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,924 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,924 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,924 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,924 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,925 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,925 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,925 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,925 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,925 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,925 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,925 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,925 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,925 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,925 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,925 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,940 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,940 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,940 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,940 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,940 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,940 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,940 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:08,941 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,941 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,941 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,941 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,941 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,947 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:08,963 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,963 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,963 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,964 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,964 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,964 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,964 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,964 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,964 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:08,964 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,964 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,964 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,964 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,965 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,965 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,965 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,965 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:08,980 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:08,980 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:08,980 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:08,980 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:08,980 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_43176> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:08,980 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:08,980 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 225 Logical Axioms: 225]
2013-10-16 19:48:08,980 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46883>)
2013-10-16 19:48:08,981 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:08,981 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:08,989 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:08,989 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:08,989 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:08,990 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:08,990 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:08,990 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:08,990 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:08,990 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:08,990 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:08,990 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:08,990 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:08,990 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:08,990 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:08,990 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:08,991 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:08,997 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:08,997 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:08,997 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:08,997 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:08,997 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:08,997 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:08,998 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:08,998 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:08,998 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,012 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,012 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,012 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,013 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,013 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,013 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,013 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,013 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,013 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,013 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,013 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,014 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,014 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,014 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,014 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,014 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,014 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,014 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,014 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,014 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,014 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,014 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,015 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,015 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,015 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,015 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,015 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,015 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,015 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,015 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,029 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,030 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,030 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,030 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,030 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,030 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,030 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,030 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,030 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,030 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,031 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,031 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,036 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 19:48:09,048 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,048 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,048 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,048 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,048 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,048 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,048 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,048 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,049 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,049 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,049 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,049 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,049 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,049 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,049 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,049 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,049 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,064 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,064 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,064 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,064 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,065 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46883> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:09,065 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:09,065 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 227 Logical Axioms: 227]
2013-10-16 19:48:09,065 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 19:48:09,065 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,065 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,074 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:09,074 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:09,074 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,074 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,074 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,075 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,075 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,075 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,075 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,075 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,075 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,075 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,075 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,075 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,075 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,076 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,076 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,076 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,076 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,076 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,076 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,076 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,076 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,076 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,076 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,091 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,091 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,091 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,091 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,091 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,091 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,091 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:09,091 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:09,092 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,092 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,092 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,092 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,092 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,092 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,092 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,092 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,092 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,092 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,092 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,093 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,093 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,093 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,093 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,093 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,093 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,093 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,093 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,093 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,093 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,093 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,094 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,094 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,108 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 19:48:09,108 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,108 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,108 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,108 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,108 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,108 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:09,108 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,108 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,109 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,109 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,109 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,109 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,109 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,123 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,123 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,124 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,124 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,124 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,124 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,124 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,124 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,125 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,125 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,125 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,125 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,125 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,125 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,125 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,125 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,125 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,141 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:09,141 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,141 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,141 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,141 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/chebi#has_parent_hydride>
2013-10-16 19:48:09,141 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 229 Logical Axioms: 229]
2013-10-16 19:48:09,142 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 19:48:09,142 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,142 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,151 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:09,151 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,151 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,151 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,151 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,151 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,152 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,152 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,152 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,152 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,152 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,152 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,152 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,152 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,152 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,159 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:09,159 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,159 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,159 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,159 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,159 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,159 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,159 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,160 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,174 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,174 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,174 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,174 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,174 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,174 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,175 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,175 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,175 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,175 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,175 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,175 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,175 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,175 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,175 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,176 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,176 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,176 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,176 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,176 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,176 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,176 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,176 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,176 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,177 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,177 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,177 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,177 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,177 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,177 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,194 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:48:09,194 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,194 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,194 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,194 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,194 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,195 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,195 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,195 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,195 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,195 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,195 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,201 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:09,213 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,213 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,214 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,214 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,214 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,214 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,214 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,214 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,214 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,214 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,214 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,214 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,215 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,215 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,215 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,215 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,215 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,230 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,230 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,230 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,230 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,230 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:09,230 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:09,231 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 230 Logical Axioms: 230]
2013-10-16 19:48:09,231 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46629>)
2013-10-16 19:48:09,231 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,231 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,240 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:09,240 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,240 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,240 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,240 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,240 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,240 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,240 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,240 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,241 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,241 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,241 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,241 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,241 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,241 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,247 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:09,247 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,248 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,248 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,248 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,248 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,248 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,248 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,248 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,262 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,263 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,263 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,263 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,263 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,263 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,263 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,263 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,263 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,264 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,264 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,264 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,264 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,264 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,264 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,264 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,264 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,264 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,264 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,265 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,265 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,265 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,265 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,265 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,265 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,265 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,265 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,265 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,265 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,265 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,280 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,280 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,280 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,280 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,280 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,280 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,280 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,280 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,280 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,281 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,281 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,281 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,287 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 19:48:09,298 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,298 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,298 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,299 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,299 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,299 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,299 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,299 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,299 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,299 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,299 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,299 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,299 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,299 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,300 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,300 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,300 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,315 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,315 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,315 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,315 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,315 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46629> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:09,315 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:09,315 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 232 Logical Axioms: 232]
2013-10-16 19:48:09,315 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23019>)
2013-10-16 19:48:09,316 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,316 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,324 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:09,325 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,325 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,325 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,325 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,325 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,325 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,325 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,325 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,325 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,326 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,326 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,326 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,326 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,326 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,332 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:09,332 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,332 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,333 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,333 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,333 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,333 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,333 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,333 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,347 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,348 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,348 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,348 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,348 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,348 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,348 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,348 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,348 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,348 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,349 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,349 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,349 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,349 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,349 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,349 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,349 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,349 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,349 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,349 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,350 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,350 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,350 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,350 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,350 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,350 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,350 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,350 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,350 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,350 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,365 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,365 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,365 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,365 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,365 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,365 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,365 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,366 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,366 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,366 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,366 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,366 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,372 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:09,384 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,384 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,385 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,385 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,385 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,385 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,385 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,385 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,385 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,386 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,386 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,386 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,386 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,386 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,386 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,386 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,386 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,401 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,401 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,401 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,401 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,401 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_23019> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:09,402 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:09,402 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 234 Logical Axioms: 234]
2013-10-16 19:48:09,402 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:09,402 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,402 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,415 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 12 ms
2013-10-16 19:48:09,415 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,415 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,415 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,415 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,415 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,415 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,416 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,416 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,416 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,416 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,416 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,416 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,416 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,416 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,423 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:09,423 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,423 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,423 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,423 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,423 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,423 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,423 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,424 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,439 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:09,439 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,439 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,439 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,439 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,439 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,440 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,440 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,440 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,440 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,440 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,440 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,440 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,440 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,440 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,441 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,441 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,441 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,441 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,441 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,441 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,441 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,441 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,441 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,441 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,442 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,442 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,442 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,442 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,442 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,459 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:48:09,459 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,459 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,459 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,459 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,459 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,459 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,460 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,460 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,460 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,460 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,460 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,466 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:09,477 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,478 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,478 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,478 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,478 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,478 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,478 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,478 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,478 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,479 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,479 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,479 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,479 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,479 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,479 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,479 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,479 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,494 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,494 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,494 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,494 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,494 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:09,494 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:09,494 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 236 Logical Axioms: 236]
2013-10-16 19:48:09,495 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_39141>)
2013-10-16 19:48:09,495 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,495 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,503 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:09,504 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:09,504 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,504 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,504 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,504 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,504 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,504 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,504 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,504 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,505 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,505 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,505 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,505 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,505 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,505 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,505 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,505 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,505 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,505 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,505 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,506 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,506 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,506 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,506 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,520 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,520 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,520 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,521 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,521 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,521 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,521 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:09,521 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:09,521 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,521 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,521 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,522 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,522 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,522 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,522 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,522 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,522 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,522 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,522 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,522 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,522 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,522 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,523 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,523 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,523 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,523 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,523 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,523 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,523 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,523 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,523 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,523 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,537 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,538 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,538 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,538 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,538 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,538 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,538 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 19:48:09,538 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,538 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,538 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,538 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,539 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,539 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,539 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,550 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,550 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,550 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,550 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,550 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,550 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,550 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,551 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,551 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,551 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,551 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,551 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,551 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,551 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,551 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,551 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,551 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,567 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:09,567 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,567 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,567 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,567 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_39141> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 19:48:09,567 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_39141-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 238 Logical Axioms: 238]
2013-10-16 19:48:09,567 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 19:48:09,568 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,568 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,577 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:09,577 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,577 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,577 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,577 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,577 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,577 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,577 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,578 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,578 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,578 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,578 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,578 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,578 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,578 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,584 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:09,584 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,585 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,585 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,585 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,585 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,585 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,585 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,585 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,599 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,599 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,600 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,600 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,600 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,600 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,600 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,600 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,600 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,600 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,601 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,601 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,601 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,601 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,601 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,601 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,601 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,601 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,601 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,601 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,601 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,602 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,602 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,602 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,602 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,602 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,602 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,602 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,602 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,602 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,616 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,617 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,617 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,617 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,617 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,617 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,617 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,617 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,617 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,617 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,618 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,618 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,624 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:09,635 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,635 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,636 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,636 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,636 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,636 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,636 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,636 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,636 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,637 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,637 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,637 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,637 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,637 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,637 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,637 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,637 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,653 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:09,653 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,653 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,653 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,653 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:09,653 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:09,653 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 239 Logical Axioms: 239]
2013-10-16 19:48:09,654 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 19:48:09,654 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,654 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,663 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:09,663 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,663 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,663 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,663 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,663 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,663 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,663 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,663 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,664 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,664 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,664 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,664 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,664 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,664 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,670 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:09,670 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,670 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,671 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,671 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,671 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,671 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,671 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,671 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,685 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,685 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,686 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,686 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,686 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,686 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,686 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,686 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,686 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,687 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,687 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,687 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,687 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,687 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,687 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,687 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,687 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,687 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,687 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,687 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,688 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,688 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,688 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,688 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,688 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,688 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,688 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,688 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,688 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,688 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,702 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,703 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,703 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,703 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,703 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,703 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,703 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,703 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,703 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,704 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,704 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,704 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,710 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:09,722 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,722 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,722 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,722 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,722 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,722 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,722 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,723 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,723 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,723 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,723 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,723 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,723 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,723 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,723 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,723 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,723 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,738 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,738 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,738 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,738 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,739 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:09,739 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:09,739 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 241 Logical Axioms: 241]
2013-10-16 19:48:09,739 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 19:48:09,739 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,739 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,748 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:09,748 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,749 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,749 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,749 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,749 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,749 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,749 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,749 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,749 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,749 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,750 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,750 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,750 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,750 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,756 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:09,756 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,756 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,756 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,757 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,757 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,757 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,757 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,757 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,773 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 19:48:09,773 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,773 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,774 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,774 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,774 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,774 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,774 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,774 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,774 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,774 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,774 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,775 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,775 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,775 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,775 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,775 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,775 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,775 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,775 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,775 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,775 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,776 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,776 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,776 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,776 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,776 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,776 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,776 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,776 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,791 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,791 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,791 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,791 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,791 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,791 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,791 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,791 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,792 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,792 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,792 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,792 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,798 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:09,809 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,809 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,809 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,809 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,809 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,810 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,810 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,810 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,810 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,810 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,810 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,810 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,810 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,810 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,810 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,811 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,811 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,825 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,825 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,825 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,826 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,826 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_33700-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:09,826 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 19:48:09,826 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 243 Logical Axioms: 243]
2013-10-16 19:48:09,826 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 19:48:09,826 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,826 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,840 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:48:09,841 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 14 ms
2013-10-16 19:48:09,841 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,841 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,841 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,841 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,841 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,841 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,841 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,842 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,842 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,842 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,842 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,842 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,842 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,842 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,842 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,842 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,842 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,843 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,843 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,843 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,843 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,843 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,843 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,857 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,857 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,857 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,857 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,858 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,858 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,858 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:48:09,858 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:48:09,858 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,858 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,858 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,858 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,858 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,858 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,859 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,859 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,859 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,859 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,859 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,859 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,859 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,859 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,859 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,859 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,860 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,860 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,860 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,860 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,860 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,860 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,860 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,860 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,875 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,875 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,875 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,875 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,875 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,875 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,875 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:48:09,875 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,875 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,876 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,876 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,876 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,876 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,876 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,887 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,887 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,888 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,888 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,888 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,888 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,888 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,888 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,888 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,888 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,888 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,888 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,889 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,889 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,889 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,889 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,889 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,904 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:09,904 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,904 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,905 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,905 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/chebi#has_parent_hydride>
2013-10-16 19:48:09,905 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 245 Logical Axioms: 245]
2013-10-16 19:48:09,905 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 19:48:09,905 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,905 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,914 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:09,914 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,914 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,915 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,915 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,915 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,915 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,915 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,915 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,915 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,915 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,915 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,915 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,916 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,916 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,922 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:09,922 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,922 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,922 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,922 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,923 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,923 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,923 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,923 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,937 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,938 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,938 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,938 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,938 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,938 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,938 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,938 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,938 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,939 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,939 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,939 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,939 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:09,939 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,939 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,939 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,939 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,939 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,939 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,940 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,940 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,940 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,940 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,940 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,940 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,940 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,940 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,940 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,940 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,940 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,955 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:09,955 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,955 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,955 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,955 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,955 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:09,955 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:09,956 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:09,956 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:09,956 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:09,956 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:09,956 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:09,962 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:09,974 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:09,974 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:09,974 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:09,975 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:09,975 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:09,975 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:09,975 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:09,975 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:09,975 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:09,975 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:09,975 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:09,975 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:09,975 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:09,975 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:09,976 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:09,976 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:09,976 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:09,991 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:09,991 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:09,991 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:09,991 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:09,992 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:09,992 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:09,992 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 246 Logical Axioms: 246]
2013-10-16 19:48:09,992 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 19:48:09,992 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:09,992 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,001 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:10,001 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,001 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,001 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,002 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,002 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,002 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,002 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,002 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,002 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,002 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,002 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,002 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,002 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,002 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,009 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,009 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,009 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,009 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,009 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,009 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,010 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,010 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,010 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,024 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,024 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,024 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,024 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,025 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,025 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,025 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,025 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,025 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,025 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,025 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,025 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,025 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,025 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,025 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,026 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,026 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,026 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,026 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,026 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,026 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,026 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,026 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,026 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,026 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,026 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,027 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,027 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,027 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,027 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,041 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,041 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,041 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,041 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,041 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,041 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,042 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,042 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,042 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,042 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,042 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,042 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,048 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:10,059 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,059 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,060 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,060 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,060 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,060 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,060 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,060 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,060 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,060 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,060 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,061 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,061 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,061 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,061 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,061 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,061 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,076 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,076 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,076 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,076 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,076 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:10,076 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:10,076 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 248 Logical Axioms: 248]
2013-10-16 19:48:10,077 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_60466>)
2013-10-16 19:48:10,077 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,077 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,085 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:48:10,086 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:10,086 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,086 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,086 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,086 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,086 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,086 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,086 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,086 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,086 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,086 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,087 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,087 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,087 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,087 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,087 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,087 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,087 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,087 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,087 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,087 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,088 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,088 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,088 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,102 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,102 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,103 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,103 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,103 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,103 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,103 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:48:10,103 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:48:10,103 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,103 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,103 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,104 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,104 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,104 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,104 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,104 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,104 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,104 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,104 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,104 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,104 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,105 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,105 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,105 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,105 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,105 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,105 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,105 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,105 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,105 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,105 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,105 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,119 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,119 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,120 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,120 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,120 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,120 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,120 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 19:48:10,120 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,120 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,120 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,120 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,120 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,120 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,121 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,131 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,131 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,132 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,132 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,132 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,132 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,132 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,132 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,132 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,132 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,132 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,132 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,133 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,133 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,133 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,133 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,133 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,148 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,148 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,148 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,148 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,148 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_60466> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 19:48:10,148 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 250 Logical Axioms: 250]
2013-10-16 19:48:10,148 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23004>)
2013-10-16 19:48:10,148 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,149 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,157 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:10,158 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,158 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,158 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,158 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,158 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,158 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,158 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,158 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,158 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,159 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,159 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,159 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,159 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,159 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,165 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,166 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,166 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,166 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,166 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,166 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,166 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,166 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,166 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,181 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,181 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,181 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,181 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,181 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,181 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,181 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,181 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,181 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,182 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,182 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,182 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,182 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,182 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,182 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,182 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,182 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,182 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,182 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,183 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,183 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,183 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,183 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,183 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,183 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,183 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,183 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,183 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,183 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,183 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,197 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,198 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,198 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,198 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,198 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,198 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,198 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,198 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,198 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,198 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,199 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,199 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,205 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:10,216 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,216 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,217 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,217 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,217 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,217 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,217 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,217 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,217 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,217 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,217 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,217 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,217 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,218 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,218 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,218 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,218 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,232 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,233 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,233 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,233 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,233 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_23004> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:10,233 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:10,233 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 251 Logical Axioms: 251]
2013-10-16 19:48:10,233 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 19:48:10,234 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,234 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,242 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:10,242 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,242 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,243 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,243 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,243 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,243 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,243 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,243 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,243 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,243 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,244 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,244 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,244 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,244 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,250 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,250 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,250 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,251 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,251 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,251 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,251 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,251 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,251 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,266 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,266 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,266 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,266 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,266 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,266 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,266 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,267 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,267 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,272 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 4 ms
2013-10-16 19:48:10,272 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,272 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,272 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,272 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,272 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,272 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,272 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,272 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,272 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,273 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,273 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,273 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,273 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,273 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,273 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,273 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,273 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,273 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,273 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,273 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,288 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,288 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,288 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,288 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,288 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,288 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,288 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,288 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,288 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,288 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,289 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,289 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,295 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:10,306 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,306 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,307 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,307 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,307 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,307 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,307 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,307 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,307 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,307 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,307 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,307 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,307 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,308 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,308 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,308 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,308 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,323 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,323 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,323 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,323 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,323 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:10,323 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:10,324 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 253 Logical Axioms: 253]
2013-10-16 19:48:10,324 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))
2013-10-16 19:48:10,324 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,324 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,333 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:10,333 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,333 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,333 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,333 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,333 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,334 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,334 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,334 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,334 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,334 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,334 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,334 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,334 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,334 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,340 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,341 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,341 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,341 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,341 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,341 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,341 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,341 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,341 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,356 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,356 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,356 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,356 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,356 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,356 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,357 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,357 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,357 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,357 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,357 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,357 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,357 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,357 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,357 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,357 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,357 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,358 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,358 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,358 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,358 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,358 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,358 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,358 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,358 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,358 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,358 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,358 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,358 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,359 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,373 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,373 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,373 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,373 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,373 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,373 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,374 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,374 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,374 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,374 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,374 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,374 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,380 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:10,392 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,392 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,392 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,392 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,393 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,393 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,393 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,393 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,393 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,393 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,393 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,393 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,393 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,393 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,393 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,394 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,394 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,408 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,408 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,409 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,409 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,409 INFO  (MinimalModelGenerator:389) GNI type:ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)) // src=<http://purl.obolibrary.org/obo/GO_0004842-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 19:48:10,409 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0043161> <http://purl.obolibrary.org/obo/GO_0043161-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 255 Logical Axioms: 255]
2013-10-16 19:48:10,409 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 19:48:10,409 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>
2013-10-16 19:48:10,409 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0004842-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 256 Logical Axioms: 256]
2013-10-16 19:48:10,410 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,410 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,419 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:10,419 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,419 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,419 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,420 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,420 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,420 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,420 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,420 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,420 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,420 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,420 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,420 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,420 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,420 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,431 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 10 ms
2013-10-16 19:48:10,431 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,432 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,432 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,432 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,432 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,433 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,433 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,433 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,448 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,448 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,448 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,448 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,448 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:10,448 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:10,449 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:10,449 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0043161-proto> is 37
2013-10-16 19:48:10,449 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0043161-proto> is 12
2013-10-16 19:48:10,450 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)
2013-10-16 19:48:10,450 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,450 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,450 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,450 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,450 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,450 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,450 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,450 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,451 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,451 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,451 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,451 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,451 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,451 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,451 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,451 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,451 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,458 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,458 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,458 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,458 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,458 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,458 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,458 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,458 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,458 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,473 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,473 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,473 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,473 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,473 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,473 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,474 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,474 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,474 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,474 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,474 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,474 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,474 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,474 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,474 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,474 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,474 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,475 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,475 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,475 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,475 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,475 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,475 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,475 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,475 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,475 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,475 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,475 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,475 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,476 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,490 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,490 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,490 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,490 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,490 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,490 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,490 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,491 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,491 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,491 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,491 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,491 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,497 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:10,509 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,509 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,509 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,509 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,509 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,510 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,510 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,510 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,510 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,510 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,510 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,510 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,510 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,510 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,510 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,511 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,511 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,525 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,525 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,525 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,526 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,526 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/PR_000002198> // src=<http://purl.obolibrary.org/obo/GO_0043161-proto> via <http://purl.obolibrary.org/obo/RO_0002233>
2013-10-16 19:48:10,526 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/PR_000002198> <http://purl.obolibrary.org/obo/PR_000002198-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 258 Logical Axioms: 258]
2013-10-16 19:48:10,526 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/PR_000002198-proto>
2013-10-16 19:48:10,526 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/PR_000002198-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 19:48:10,526 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/PR_000002198-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/PR_000002198-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 259 Logical Axioms: 259]
2013-10-16 19:48:10,526 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,526 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,535 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:10,535 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,535 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,535 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,536 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,536 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,536 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,536 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,536 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,536 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,536 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,536 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,536 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,536 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,536 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,543 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,543 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,543 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,543 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,543 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,544 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,544 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,544 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,544 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,559 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,559 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,559 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,559 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,559 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:10,559 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:10,560 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:10,560 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/PR_000002198-proto> is 11
2013-10-16 19:48:10,560 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/PR_000002198-proto> is 0
2013-10-16 19:48:10,560 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0044257>)
2013-10-16 19:48:10,560 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,560 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,560 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,560 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,560 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,560 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,561 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,561 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,561 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,561 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,561 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,561 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,561 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,561 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,561 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,561 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,561 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,568 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,568 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,568 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,568 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,568 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,568 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,568 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,568 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,568 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,583 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,583 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,583 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,583 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,583 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,584 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,584 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,584 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,584 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,584 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,584 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,584 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,584 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,584 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,584 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,585 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,585 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,585 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,585 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,585 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,585 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,585 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,585 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,585 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,585 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,585 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,585 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,586 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,586 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,586 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,600 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,600 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,601 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,601 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,601 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,601 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,601 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,601 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,601 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,601 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,601 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,601 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,608 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:10,619 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,619 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,620 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,620 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,620 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,620 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,620 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,620 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,620 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,620 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,620 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,621 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,621 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,621 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,621 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,621 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,621 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,636 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,636 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,636 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,636 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,636 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0044257> // src=<http://purl.obolibrary.org/obo/GO_0043161-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 19:48:10,636 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0044257> <http://purl.obolibrary.org/obo/GO_0044257-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 261 Logical Axioms: 261]
2013-10-16 19:48:10,636 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0044257-proto>
2013-10-16 19:48:10,636 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 19:48:10,637 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 262 Logical Axioms: 262]
2013-10-16 19:48:10,637 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,637 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,646 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:10,646 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,646 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,646 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,646 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,646 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,646 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,646 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,647 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,647 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,647 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,647 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,647 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,647 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,647 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,654 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,654 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,654 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,654 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,654 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,654 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,654 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,654 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,655 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,669 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,669 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,669 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,669 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,669 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:10,669 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:10,670 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:10,670 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0044257-proto> is 28
2013-10-16 19:48:10,670 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0044257-proto> is 8
2013-10-16 19:48:10,670 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0071704>)
2013-10-16 19:48:10,670 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,670 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,671 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,671 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,671 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,671 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,671 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,671 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,671 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,671 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,671 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,672 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,672 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,672 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,672 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,672 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,672 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,686 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 13 ms
2013-10-16 19:48:10,686 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,686 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,686 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,686 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,686 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,687 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,687 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,687 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,701 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,701 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,701 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,702 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,702 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,702 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,702 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,702 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,702 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,702 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,702 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,703 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,703 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,703 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,703 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,703 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,703 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,703 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,703 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,703 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,703 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,703 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,704 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,704 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,704 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,704 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,704 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,704 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,704 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,704 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,718 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,718 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,718 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,719 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,719 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,719 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,719 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,719 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,719 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,719 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,719 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,719 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,725 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:10,737 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,737 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,746 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 9 ms
2013-10-16 19:48:10,747 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,747 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,755 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 8 ms
2013-10-16 19:48:10,755 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,755 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,755 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,755 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,755 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,758 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 2 ms
2013-10-16 19:48:10,758 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,758 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,759 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 1 ms
2013-10-16 19:48:10,759 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,759 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,774 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,774 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,774 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,775 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,776 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0071704> // src=<http://purl.obolibrary.org/obo/GO_0044257-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 19:48:10,776 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0071704> <http://purl.obolibrary.org/obo/GO_0071704-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 264 Logical Axioms: 264]
2013-10-16 19:48:10,776 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0071704-proto>
2013-10-16 19:48:10,776 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>
2013-10-16 19:48:10,776 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 265 Logical Axioms: 265]
2013-10-16 19:48:10,776 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,776 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,785 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:10,785 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,785 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,785 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,785 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,786 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,786 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,786 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,786 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,786 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,786 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,786 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,786 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,786 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,786 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,793 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,793 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,793 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,793 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,793 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,794 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,794 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,794 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,794 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,809 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,809 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,809 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,809 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,809 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:10,809 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:10,809 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:10,809 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0071704-proto> is 10
2013-10-16 19:48:10,810 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0071704-proto> is 4
2013-10-16 19:48:10,810 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/CHEBI_50860>)
2013-10-16 19:48:10,810 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,810 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,810 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,810 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,810 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,810 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,810 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,810 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,811 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,811 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,811 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,811 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,811 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,811 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,811 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,811 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,811 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,817 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,817 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,818 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,818 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,818 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,818 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,818 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,818 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,818 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,833 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,833 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,833 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,833 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,833 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,833 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,834 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,834 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,834 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,834 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,834 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,834 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,834 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,834 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,834 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,834 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,835 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,835 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,835 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,835 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,835 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,835 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,835 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,835 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,835 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,835 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,835 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,836 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,836 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,836 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,851 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,851 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,851 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,851 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,851 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,851 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,851 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,851 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,852 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,852 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,852 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,852 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,858 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:10,869 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,869 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,870 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,870 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,870 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,871 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 1 ms
2013-10-16 19:48:10,871 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,871 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,871 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,872 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,872 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,872 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,872 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,872 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,872 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,872 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,872 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,887 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,887 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,887 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,887 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,887 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_50860> // src=<http://purl.obolibrary.org/obo/GO_0071704-proto> via <http://purl.obolibrary.org/obo/RO_0000057>
2013-10-16 19:48:10,888 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_50860-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>
2013-10-16 19:48:10,888 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_50860-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 267 Logical Axioms: 267]
2013-10-16 19:48:10,888 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0044257>)
2013-10-16 19:48:10,888 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,888 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,897 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:10,897 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,897 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,897 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,897 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,897 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,897 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,898 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,898 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,898 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,898 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,898 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,898 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,898 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,898 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,905 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:10,905 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,905 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,905 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,905 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,905 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,905 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,905 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,905 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,920 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,920 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,920 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,920 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,920 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,920 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,921 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,921 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,921 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,921 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,921 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,921 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,921 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,921 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,921 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,922 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,922 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,922 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,927 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 5 ms
2013-10-16 19:48:10,927 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,927 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,927 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,927 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,927 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,928 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,928 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,928 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,928 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,928 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,928 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,942 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,942 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,942 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,942 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,943 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,943 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,943 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:10,943 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,943 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,943 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,943 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,943 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,950 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:10,961 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,961 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,962 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,962 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,962 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,966 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 4 ms
2013-10-16 19:48:10,966 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,966 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:10,966 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:10,967 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:10,967 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:10,967 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:10,967 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:10,967 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:10,967 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:10,967 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:10,967 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:10,982 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:10,982 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:10,982 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:10,983 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:10,983 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0044257> // src=<http://purl.obolibrary.org/obo/GO_0071704-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 19:48:10,983 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>
2013-10-16 19:48:10,983 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 269 Logical Axioms: 269]
2013-10-16 19:48:10,983 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/CHEBI_36080>)
2013-10-16 19:48:10,983 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:10,983 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:10,992 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:10,992 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:10,992 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:10,993 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:10,993 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:10,993 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:10,993 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:10,993 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:10,993 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:10,993 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:10,993 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:10,993 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:10,993 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:10,993 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:10,994 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,000 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:11,000 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,000 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,000 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,000 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,000 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,000 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,000 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,000 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,015 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,015 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,015 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,015 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,015 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,015 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,016 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,016 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,016 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,016 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,016 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,016 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,016 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,016 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,016 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,016 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,017 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,017 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,017 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,017 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,017 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,017 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,017 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,017 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,017 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,017 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,017 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,017 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,018 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,018 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,031 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 19:48:11,032 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,032 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,032 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,032 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,032 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,032 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,032 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,032 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,032 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,033 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,033 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,039 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:11,050 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,050 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,050 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,051 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,051 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,051 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,051 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,051 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,051 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,051 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,051 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,051 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,051 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,052 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,052 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,052 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,052 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,067 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,067 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,067 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,067 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,067 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_36080> // src=<http://purl.obolibrary.org/obo/GO_0044257-proto> via <http://purl.obolibrary.org/obo/RO_0002233>
2013-10-16 19:48:11,067 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>
2013-10-16 19:48:11,068 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 269 Logical Axioms: 269]
2013-10-16 19:48:11,068 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on> <http://purl.obolibrary.org/obo/PRO_000016963>)
2013-10-16 19:48:11,068 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,068 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,077 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PRO_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PRO_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>)))
2013-10-16 19:48:11,077 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 19:48:11,077 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,077 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,077 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,077 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,077 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,077 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,078 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,078 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,078 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,078 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,078 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,078 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,078 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,078 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,078 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,078 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,078 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,078 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,079 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,079 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,079 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,079 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,079 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,093 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,093 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,093 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,093 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,094 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,094 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,094 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PRO_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PRO_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>)))
2013-10-16 19:48:11,094 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PRO_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PRO_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>)))
2013-10-16 19:48:11,094 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,094 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,094 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,094 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,094 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,094 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,094 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,095 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,095 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,095 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,095 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,095 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,095 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,095 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,095 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,095 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,095 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,095 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,095 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,096 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,096 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,096 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,096 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,096 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,110 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,110 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,110 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,111 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,111 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,111 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,111 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PRO_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PRO_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>)))
2013-10-16 19:48:11,111 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,111 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,111 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,111 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,111 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,111 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,112 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,123 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,123 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,123 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,123 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,123 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,123 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,123 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,123 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,124 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,124 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,124 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,124 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,124 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,124 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,124 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,124 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,124 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,139 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,139 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,139 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,139 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,140 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/PRO_000016963> // src=<http://purl.obolibrary.org/obo/GO_0043161-proto> via <http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>
2013-10-16 19:48:11,140 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/PRO_000016963> <http://purl.obolibrary.org/obo/PRO_000016963-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 271 Logical Axioms: 271]
2013-10-16 19:48:11,140 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/PRO_000016963-proto>
2013-10-16 19:48:11,140 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/PRO_000016963-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 272 Logical Axioms: 272]
2013-10-16 19:48:11,140 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,140 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,148 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:11,149 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,149 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,149 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,149 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,149 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,149 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,149 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,149 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,149 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,149 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,150 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,150 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,150 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,150 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,156 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:11,156 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,156 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,156 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,157 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,157 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,157 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,157 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,157 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,171 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,171 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,171 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,172 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,172 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:11,172 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:11,172 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:11,172 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/PRO_000016963-proto> is 2
2013-10-16 19:48:11,172 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/PRO_000016963-proto> is 0
2013-10-16 19:48:11,172 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/CHEBI_36080>)
2013-10-16 19:48:11,172 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,172 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,173 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,173 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,173 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,173 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,173 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,173 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,173 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,173 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,173 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,173 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,174 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,174 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,174 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,174 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,174 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,180 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:11,180 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,180 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,180 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,181 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,181 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,181 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,181 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,181 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,195 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,195 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,195 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,196 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,196 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,196 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,196 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,196 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,196 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,196 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,196 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,196 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,197 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,197 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,197 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,197 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,197 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,197 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,197 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,197 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,197 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,197 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,197 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,197 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,198 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,198 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,198 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,198 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,198 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,198 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,212 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,212 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,212 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,212 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,213 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,213 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,213 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,213 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,213 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,213 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,213 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,213 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,219 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:11,231 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,231 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,231 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,231 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,231 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,231 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,232 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,232 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,232 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,232 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,232 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,232 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,232 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,232 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,232 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,232 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,232 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,247 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,247 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,247 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,247 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,248 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_36080> // src=<http://purl.obolibrary.org/obo/GO_0043161-proto> via <http://purl.obolibrary.org/obo/RO_0002233>
2013-10-16 19:48:11,248 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 19:48:11,248 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 273 Logical Axioms: 273]
2013-10-16 19:48:11,248 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0000502>)
2013-10-16 19:48:11,248 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,248 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,257 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:11,257 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,257 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,257 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,258 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,258 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,258 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,258 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,258 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,258 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,258 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,258 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,258 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,258 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,258 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,265 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:11,265 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,265 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,265 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,265 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,265 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,265 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,265 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,265 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,280 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,280 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,280 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,280 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,280 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,280 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,281 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,281 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,281 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,281 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,281 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,281 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,281 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,281 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,281 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,281 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,281 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,282 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,282 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,282 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,282 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,282 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,282 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,282 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,282 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,282 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,282 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,282 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,283 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,283 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,297 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,297 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,297 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,297 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,297 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,298 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,298 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,298 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,298 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,298 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,298 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,298 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,304 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:11,316 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,316 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,317 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,317 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,317 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,317 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,317 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,317 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,317 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,317 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,317 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,317 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,318 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,318 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,318 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,318 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,318 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,333 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,333 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,333 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,333 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,333 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0000502> // src=<http://purl.obolibrary.org/obo/GO_0043161-proto> via <http://purl.obolibrary.org/obo/RO_0000057>
2013-10-16 19:48:11,333 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0000502> <http://purl.obolibrary.org/obo/GO_0000502-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 275 Logical Axioms: 275]
2013-10-16 19:48:11,333 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0000502-proto>
2013-10-16 19:48:11,333 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/GO_0000502-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 19:48:11,334 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/GO_0000502-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/GO_0000502-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 276 Logical Axioms: 276]
2013-10-16 19:48:11,334 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,334 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,347 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 13 ms
2013-10-16 19:48:11,347 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,347 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,347 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,347 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,347 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,348 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,348 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,348 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,348 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,348 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,348 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,348 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,348 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,348 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,355 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:11,355 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,355 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,355 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,355 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,356 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,356 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,356 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,356 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,370 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,371 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,371 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,371 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,371 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:11,371 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:11,371 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:11,371 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0000502-proto> is 17
2013-10-16 19:48:11,371 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0000502-proto> is 3
2013-10-16 19:48:11,372 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of> <http://purl.obolibrary.org/obo/GO_0030163>)
2013-10-16 19:48:11,372 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,372 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,372 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>)))
2013-10-16 19:48:11,372 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,372 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,372 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,372 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,372 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,372 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,373 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,373 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,373 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,373 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,373 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,373 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,373 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,373 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,373 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,373 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,373 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,373 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,374 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,374 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,374 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,374 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,374 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,374 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,389 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:11,389 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,389 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,389 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,390 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,390 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,390 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>)))
2013-10-16 19:48:11,390 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>)))
2013-10-16 19:48:11,390 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,390 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,390 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,390 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,390 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,390 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,391 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,391 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,391 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,391 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,391 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,391 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,391 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,391 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,391 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,391 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,391 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,392 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,392 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,392 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,392 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,392 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,392 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,392 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,407 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,407 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,407 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,407 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,407 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,407 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,407 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>)))
2013-10-16 19:48:11,408 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,408 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,408 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,408 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,408 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,408 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,408 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,420 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,420 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,420 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,420 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,420 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,421 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,421 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,421 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,421 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,421 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,421 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,421 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,421 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,421 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,421 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,421 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,422 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,436 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,436 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,436 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,437 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,437 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0030163> // src=<http://purl.obolibrary.org/obo/GO_0000502-proto> via <http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>
2013-10-16 19:48:11,437 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0030163> <http://purl.obolibrary.org/obo/GO_0030163-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 278 Logical Axioms: 278]
2013-10-16 19:48:11,437 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0030163-proto>
2013-10-16 19:48:11,437 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of> <http://purl.obolibrary.org/obo/GO_0000502-proto> <http://purl.obolibrary.org/obo/GO_0030163-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 279 Logical Axioms: 279]
2013-10-16 19:48:11,437 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,437 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,446 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:11,446 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,446 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,446 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,447 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,447 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,447 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,447 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,447 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,447 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,447 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,447 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,447 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,447 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,448 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,454 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:11,454 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,454 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,455 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,455 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,455 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,455 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,455 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,455 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,469 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,469 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,470 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,470 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,470 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:11,470 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:11,470 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:11,470 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0030163-proto> is 20
2013-10-16 19:48:11,470 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0030163-proto> is 7
2013-10-16 19:48:11,471 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/CHEBI_36080>)
2013-10-16 19:48:11,471 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,471 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,471 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,471 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,471 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,471 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,471 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,471 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,472 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,472 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,472 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,472 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,472 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,472 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,472 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,472 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,472 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,479 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:11,479 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,479 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,479 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,479 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,479 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,480 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,480 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,480 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,494 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,495 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,495 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,495 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,495 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,495 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,495 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,495 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,495 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,496 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,496 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,496 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,496 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,496 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,496 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,496 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,496 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,496 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,496 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,496 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,497 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,497 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,497 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,497 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,497 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,497 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,497 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,497 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,497 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,497 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,512 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,512 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,512 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,512 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,512 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,512 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,513 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,513 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,513 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,513 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,513 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,513 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,520 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:11,531 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,531 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,532 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,532 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,532 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,536 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 4 ms
2013-10-16 19:48:11,536 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,536 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,537 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,537 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,537 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,537 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,537 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,537 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,537 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,538 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,538 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,553 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 19:48:11,553 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,553 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,553 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,554 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_36080> // src=<http://purl.obolibrary.org/obo/GO_0030163-proto> via <http://purl.obolibrary.org/obo/RO_0002233>
2013-10-16 19:48:11,554 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0030163-proto>
2013-10-16 19:48:11,554 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0030163-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/GO_0030163-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 280 Logical Axioms: 280]
2013-10-16 19:48:11,554 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005622>)
2013-10-16 19:48:11,554 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,554 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,563 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 19:48:11,563 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,563 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,563 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,563 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,563 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,564 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,564 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,564 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,564 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,564 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,564 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,564 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,564 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,564 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,570 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 19:48:11,571 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,571 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,571 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,571 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,571 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,571 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,571 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,571 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,586 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,586 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,586 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,586 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,586 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,586 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,587 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,587 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,587 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,587 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,587 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,587 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,587 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 19:48:11,587 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,587 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,587 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,587 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,588 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,588 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 19:48:11,588 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,588 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,588 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,588 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,588 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,588 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,588 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,588 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,588 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,588 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,589 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,603 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,603 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,603 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,603 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,603 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 19:48:11,603 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 19:48:11,604 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 19:48:11,604 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 19:48:11,604 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 19:48:11,604 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 19:48:11,604 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 19:48:11,604 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 19:48:11,610 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 19:48:11,621 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 19:48:11,622 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 19:48:11,622 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 19:48:11,622 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 19:48:11,622 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 19:48:11,623 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 1 ms
2013-10-16 19:48:11,624 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 19:48:11,624 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 19:48:11,624 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 19:48:11,624 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 19:48:11,624 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 19:48:11,624 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 19:48:11,624 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 19:48:11,624 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 19:48:11,624 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 19:48:11,625 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 19:48:11,625 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 19:48:11,639 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 19:48:11,639 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 19:48:11,639 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 19:48:11,640 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 19:48:11,640 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0005622> // src=<http://purl.obolibrary.org/obo/GO_0000502-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 19:48:11,640 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0000502-proto>
2013-10-16 19:48:11,640 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0000502-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0000502-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 282 Logical Axioms: 282]
2013-10-16 19:48:11,640 INFO  (MinimalModelGenerator:604) Collapsing...
2013-10-16 19:48:11,640 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 19:48:11,640 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 19:48:11,640 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 19:48:11,643 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_33709-proto> }
2013-10-16 19:48:11,644 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_24433-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33708-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_46883-proto> }
2013-10-16 19:48:11,645 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_33704-proto> }
2013-10-16 19:48:11,645 INFO  (MinimalModelGenerator:666)        overwriting existing target <http://purl.obolibrary.org/obo/CHEBI_33708-proto> ==> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 19:48:11,646 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/GO_0071704-proto> ==> { <http://purl.obolibrary.org/obo/GO_0016567-proto> ==OR== <http://purl.obolibrary.org/obo/GO_0043161-proto> }
2013-10-16 19:48:11,647 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_33250-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_25805-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_49637-proto> }
2013-10-16 19:48:11,648 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_24433-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33700-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_23019-proto> }
2013-10-16 19:48:11,648 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/GO_0071704-proto> ==> { <http://purl.obolibrary.org/obo/GO_0016567-proto> ==OR== <http://purl.obolibrary.org/obo/GO_0030163-proto> }
2013-10-16 19:48:11,649 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_24433-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33700-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_23004-proto> }
2013-10-16 19:48:11,650 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_13941-proto> }
2013-10-16 19:48:11,651 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_24433-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33700-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_43176-proto> }
2013-10-16 19:48:11,651 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_33250-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_25805-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_25555-proto> }
2013-10-16 19:48:11,652 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/GO_0071704-proto> ==> { <http://purl.obolibrary.org/obo/GO_0016567-proto> ==OR== <http://purl.obolibrary.org/obo/GO_0044257-proto> }
2013-10-16 19:48:11,652 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/GO_0030163-proto> ==> { <http://purl.obolibrary.org/obo/GO_0043161-proto> ==OR== <http://purl.obolibrary.org/obo/GO_0044257-proto> }
2013-10-16 19:48:11,653 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_33709-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33704-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_28616-proto> }
2013-10-16 19:48:11,654 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_28616-proto> }
2013-10-16 19:48:11,654 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_33250-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_25805-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_27594-proto> }
2013-10-16 19:48:11,654 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_24433-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33700-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_46629-proto> }
2013-10-16 19:48:11,655 INFO  (MinimalModelGenerator:670)        keeping existing target <http://purl.obolibrary.org/obo/CHEBI_16541-proto>, which is more specific than <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 19:48:11,656 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_60466-proto> }
2013-10-16 19:48:11,657 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_37022-proto> }
2013-10-16 19:48:11,659 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_33558-proto> }
2013-10-16 19:48:11,660 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_37022-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_13941-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_33558-proto> }
2013-10-16 19:48:11,660 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_36080-proto> }
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/GO_0071704-proto> -> <http://purl.obolibrary.org/obo/GO_0016567-proto>
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_33250-proto> -> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/GO_0030163-proto> -> <http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_37022-proto> -> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_50860-proto> -> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/GO_0000502-proto> -> <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 19:48:11,661 INFO  (MinimalModelGenerator:703)   ACTUALLY collapsing <http://purl.obolibrary.org/obo/GO_0000502-proto> -> <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 19:48:11,663 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_24433-proto> -> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 19:48:11,664 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 19:48:11,664 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_33708-proto> -> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 19:48:11,664 INFO  (MinimalModelGenerator:703)   ACTUALLY collapsing <http://purl.obolibrary.org/obo/CHEBI_33708-proto> -> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 19:48:11,664 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_33709-proto> -> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:11,664 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 19:48:11,664 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_16670-proto> -> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:11,664 INFO  (MinimalModelGenerator:703)   ACTUALLY collapsing <http://purl.obolibrary.org/obo/CHEBI_16670-proto> -> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:11,664 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 19:48:11,665 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)
2013-10-16 19:48:11,665 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/GO_0071704> <http://purl.obolibrary.org/obo/GO_0071704-proto>)
2013-10-16 19:48:11,665 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 19:48:11,665 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,665 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,669 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33250> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of> <http://purl.obolibrary.org/obo/GO_0030877-proto> <http://purl.obolibrary.org/obo/GO_0030163-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)
2013-10-16 19:48:11,670 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/GO_0030163> <http://purl.obolibrary.org/obo/GO_0030163-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_39141-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_50860-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_50860-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)
2013-10-16 19:48:11,671 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33709> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_50860> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_24433> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/GO_0030163-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0030163-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>)
2013-10-16 19:48:11,672 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_37022> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 19:48:11,673 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 19:48:11,674 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>)
2013-10-16 19:48:11,674 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)
2013-10-16 19:48:11,674 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 19:48:11,674 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 19:48:11,674 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)
2013-10-16 19:48:11,674 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)
2013-10-16 19:48:11,676 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=4
2013-10-16 19:48:11,696 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,696 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,696 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,696 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,696 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,697 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,697 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,697 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,697 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,697 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,697 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,697 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,697 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,697 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,697 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,701 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 19:48:11,703 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>
2013-10-16 19:48:11,704 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/GO_0005737-proto>
2013-10-16 19:48:11,707 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,713 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,714 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 19:48:11,714 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 19:48:11,717 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 19:48:11,717 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 19:48:11,723 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,723 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,723 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,724 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,724 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,724 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,724 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,724 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,724 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,724 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,724 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,726 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>
2013-10-16 19:48:11,726 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=92
2013-10-16 19:48:11,727 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 19:48:11,730 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:11,730 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:11,730 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:11,731 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0004842-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>
2013-10-16 19:48:11,732 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>
2013-10-16 19:48:11,732 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 19:48:11,733 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 19:48:11,733 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 19:48:11,733 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 19:48:11,740 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:48:11,740 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:48:11,740 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:48:11,740 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:48:11,740 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:48:11,740 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:48:11,740 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:48:11,740 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:48:11,744 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:11,744 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:11,744 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:11,745 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 19:48:11,747 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 19:48:11,747 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 19:48:11,747 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 19:48:11,748 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 19:48:11,748 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 19:48:11,749 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 19:48:11,749 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 19:48:11,750 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 19:48:11,750 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 19:48:11,751 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:11,751 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:11,751 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:11,752 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 19:48:11,752 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 19:48:11,753 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 19:48:11,754 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:11,754 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:11,754 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:11,755 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0030877-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>
2013-10-16 19:48:11,756 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 19:48:11,756 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 19:48:11,756 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 19:48:11,756 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005737-proto> <http://purl.obolibrary.org/obo/GO_0005623-proto>
2013-10-16 19:48:11,756 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0030877-proto> <http://purl.obolibrary.org/obo/GO_0005623-proto>
2013-10-16 19:48:11,757 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=92
2013-10-16 19:48:11,757 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,759 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,761 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,763 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,764 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,765 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,765 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,767 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,767 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,768 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,770 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,774 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,775 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,775 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,775 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,777 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,778 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,779 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,781 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,783 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,783 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,784 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,785 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 19:48:11,785 INFO  (MinimalModelGenerator:1304) Normalizing: <http://purl.obolibrary.org/obo/BFO_0000066>
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1307) Inverse props: [<http://purl.obolibrary.org/obo/BFO_0000067>]
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1304) Normalizing: <http://purl.obolibrary.org/obo/RO_0002223>
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1307) Inverse props: [<http://purl.obolibrary.org/obo/RO_0002224>]
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1304) Normalizing: <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1307) Inverse props: [<http://purl.obolibrary.org/obo/BFO_0000051>]
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)
2013-10-16 19:48:11,786 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0016567-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0005737-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 19:48:11,787 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005737-proto> <http://purl.obolibrary.org/obo/GO_0030877-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 19:48:11,788 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 19:48:11,789 INFO  (MinimalModelGenerator:1304) Normalizing: <http://purl.obolibrary.org/obo/RO_0002211>
2013-10-16 19:48:11,789 INFO  (MinimalModelGenerator:1307) Inverse props: [<http://purl.obolibrary.org/obo/RO_0002334>]
2013-10-16 19:48:11,789 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 19:48:11,789 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,789 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/PR_000002198-proto>
2013-10-16 19:48:11,789 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 19:48:11,789 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 19:48:11,789 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_46883-proto>
2013-10-16 19:48:11,790 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 19:48:11,790 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/NCBITaxon_131567-proto>
2013-10-16 19:48:11,790 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 19:48:11,790 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_50910-proto>
2013-10-16 19:48:11,790 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 19:48:11,790 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:11,790 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_23019-proto>
2013-10-16 19:48:11,791 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:11,791 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_26619-proto>
2013-10-16 19:48:11,791 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_39141-proto>
2013-10-16 19:48:11,791 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,791 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/GO_0005737-proto>
2013-10-16 19:48:11,791 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/PRO_000016963-proto>
2013-10-16 19:48:11,791 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_43176-proto>
2013-10-16 19:48:11,791 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:11,791 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_49637-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_33937-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/GO_0005622-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_59740-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/GO_0005623-proto>
2013-10-16 19:48:11,792 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_23004-proto>
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:773) SCHEDULING: <http://purl.obolibrary.org/obo/CHEBI_46629-proto>
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 132 Logical Axioms: 132]
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 133 Logical Axioms: 133]
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_10545-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 134 Logical Axioms: 134]
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 135 Logical Axioms: 135]
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 135 Logical Axioms: 135]
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 135 Logical Axioms: 135]
2013-10-16 19:48:11,793 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 135 Logical Axioms: 135]
2013-10-16 19:48:11,794 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 135 Logical Axioms: 135]
2013-10-16 19:48:11,794 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_33252-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 135 Logical Axioms: 135]
2013-10-16 19:48:11,794 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 136 Logical Axioms: 136]
2013-10-16 19:48:11,794 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 136 Logical Axioms: 136]
2013-10-16 19:48:11,794 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555>) <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 136 Logical Axioms: 136]
2013-10-16 19:48:11,794 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 19:48:11,794 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253>) <http://purl.obolibrary.org/obo/CHEBI_33253-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 121 Logical Axioms: 121]
2013-10-16 19:48:11,794 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/PR_000002198-proto>
2013-10-16 19:48:11,794 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/PR_000002198>) <http://purl.obolibrary.org/obo/PR_000002198-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 119 Logical Axioms: 119]
2013-10-16 19:48:11,795 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>) <http://purl.obolibrary.org/obo/GO_0043161-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 120 Logical Axioms: 120]
2013-10-16 19:48:11,795 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 19:48:11,795 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33700>) <http://purl.obolibrary.org/obo/CHEBI_33700-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 117 Logical Axioms: 117]
2013-10-16 19:48:11,795 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33700>) <http://purl.obolibrary.org/obo/CHEBI_33700-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 118 Logical Axioms: 118]
2013-10-16 19:48:11,795 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 19:48:11,795 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_29337>) <http://purl.obolibrary.org/obo/CHEBI_49637-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 113 Logical Axioms: 113]
2013-10-16 19:48:11,795 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_29337>) <http://purl.obolibrary.org/obo/CHEBI_29337-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 114 Logical Axioms: 114]
2013-10-16 19:48:11,795 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_29337>) <http://purl.obolibrary.org/obo/CHEBI_29340-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 115 Logical Axioms: 115]
2013-10-16 19:48:11,795 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_29337>) <http://purl.obolibrary.org/obo/CHEBI_29337-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 116 Logical Axioms: 116]
2013-10-16 19:48:11,795 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_29337>) <http://purl.obolibrary.org/obo/CHEBI_16134-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 117 Logical Axioms: 117]
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_46883-proto>
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883>) <http://purl.obolibrary.org/obo/CHEBI_46883-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 110 Logical Axioms: 110]
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883>) <http://purl.obolibrary.org/obo/CHEBI_46883-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 111 Logical Axioms: 111]
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805>) <http://purl.obolibrary.org/obo/CHEBI_10545-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 107 Logical Axioms: 107]
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805>) <http://purl.obolibrary.org/obo/CHEBI_25805-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 108 Logical Axioms: 108]
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805>) <http://purl.obolibrary.org/obo/CHEBI_25805-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 109 Logical Axioms: 109]
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805>) <http://purl.obolibrary.org/obo/CHEBI_25805-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 109 Logical Axioms: 109]
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805>) <http://purl.obolibrary.org/obo/CHEBI_33252-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 109 Logical Axioms: 109]
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_25805>) <http://purl.obolibrary.org/obo/CHEBI_25805-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 110 Logical Axioms: 110]
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805>) <http://purl.obolibrary.org/obo/CHEBI_25805-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 111 Logical Axioms: 111]
2013-10-16 19:48:11,796 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805>) <http://purl.obolibrary.org/obo/CHEBI_25805-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 111 Logical Axioms: 111]
2013-10-16 19:48:11,797 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/NCBITaxon_131567-proto>
2013-10-16 19:48:11,797 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/NCBITaxon_131567>) <http://purl.obolibrary.org/obo/GO_0005623-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 100 Logical Axioms: 100]
2013-10-16 19:48:11,797 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 19:48:11,797 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33558>) <http://purl.obolibrary.org/obo/CHEBI_27594-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 99 Logical Axioms: 99]
2013-10-16 19:48:11,797 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_33558>) <http://purl.obolibrary.org/obo/CHEBI_33558-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 100 Logical Axioms: 100]
2013-10-16 19:48:11,797 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_33558>) <http://purl.obolibrary.org/obo/CHEBI_33704-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 101 Logical Axioms: 101]
2013-10-16 19:48:11,797 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_50910-proto>
2013-10-16 19:48:11,797 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_50910>) <http://purl.obolibrary.org/obo/CHEBI_16134-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 97 Logical Axioms: 97]
2013-10-16 19:48:11,797 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 19:48:11,797 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_13941>) <http://purl.obolibrary.org/obo/CHEBI_13941-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 96 Logical Axioms: 96]
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_13941>) <http://purl.obolibrary.org/obo/CHEBI_27594-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 97 Logical Axioms: 97]
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_13941>) <http://purl.obolibrary.org/obo/CHEBI_28616-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 98 Logical Axioms: 98]
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_28938>) <http://purl.obolibrary.org/obo/CHEBI_49637-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 94 Logical Axioms: 94]
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_28938>) <http://purl.obolibrary.org/obo/CHEBI_28938-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 95 Logical Axioms: 95]
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_28938>) <http://purl.obolibrary.org/obo/CHEBI_16134-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 96 Logical Axioms: 96]
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_23019-proto>
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019>) <http://purl.obolibrary.org/obo/CHEBI_23019-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 92 Logical Axioms: 92]
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019>) <http://purl.obolibrary.org/obo/CHEBI_23019-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 93 Logical Axioms: 93]
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 19:48:11,798 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_16541>) <http://purl.obolibrary.org/obo/CHEBI_16541-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 89 Logical Axioms: 89]
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_16541>) <http://purl.obolibrary.org/obo/CHEBI_23004-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 90 Logical Axioms: 90]
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_16541>) <http://purl.obolibrary.org/obo/CHEBI_27594-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 91 Logical Axioms: 91]
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16541>) <http://purl.obolibrary.org/obo/CHEBI_16541-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 92 Logical Axioms: 92]
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_26619-proto>
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_26619>) <http://purl.obolibrary.org/obo/CHEBI_16134-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 85 Logical Axioms: 85]
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_39141-proto>
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_39141>) <http://purl.obolibrary.org/obo/CHEBI_28616-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 84 Logical Axioms: 84]
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_39141>) <http://purl.obolibrary.org/obo/CHEBI_33704-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 85 Logical Axioms: 85]
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252>) <http://purl.obolibrary.org/obo/CHEBI_33252-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 83 Logical Axioms: 83]
2013-10-16 19:48:11,799 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252>) <http://purl.obolibrary.org/obo/CHEBI_33252-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 84 Logical Axioms: 84]
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/GO_0005737-proto>
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005737>) <http://purl.obolibrary.org/obo/GO_0005737-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 78 Logical Axioms: 78]
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005737>) <http://purl.obolibrary.org/obo/GO_0030877-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 79 Logical Axioms: 79]
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/PRO_000016963-proto>
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on> <http://purl.obolibrary.org/obo/PRO_000016963>) <http://purl.obolibrary.org/obo/GO_0043161-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 76 Logical Axioms: 76]
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_43176-proto>
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176>) <http://purl.obolibrary.org/obo/CHEBI_43176-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 75 Logical Axioms: 75]
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176>) <http://purl.obolibrary.org/obo/CHEBI_43176-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 76 Logical Axioms: 76]
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33704>) <http://purl.obolibrary.org/obo/CHEBI_46629-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 72 Logical Axioms: 72]
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33704>) <http://purl.obolibrary.org/obo/CHEBI_27594-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 73 Logical Axioms: 73]
2013-10-16 19:48:11,800 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_33704>) <http://purl.obolibrary.org/obo/CHEBI_33704-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 74 Logical Axioms: 74]
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33704>) <http://purl.obolibrary.org/obo/CHEBI_49637-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 75 Logical Axioms: 75]
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_16134>) <http://purl.obolibrary.org/obo/CHEBI_49637-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 68 Logical Axioms: 68]
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>) <http://purl.obolibrary.org/obo/CHEBI_28616-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 69 Logical Axioms: 69]
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_16134>) <http://purl.obolibrary.org/obo/CHEBI_16134-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 70 Logical Axioms: 70]
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_49637-proto>
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637>) <http://purl.obolibrary.org/obo/CHEBI_10545-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 62 Logical Axioms: 62]
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637>) <http://purl.obolibrary.org/obo/CHEBI_49637-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 63 Logical Axioms: 63]
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_49637>) <http://purl.obolibrary.org/obo/CHEBI_49637-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 64 Logical Axioms: 64]
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637>) <http://purl.obolibrary.org/obo/CHEBI_49637-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 65 Logical Axioms: 65]
2013-10-16 19:48:11,801 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_33937-proto>
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33937>) <http://purl.obolibrary.org/obo/CHEBI_27594-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 54 Logical Axioms: 54]
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_60466>) <http://purl.obolibrary.org/obo/CHEBI_27594-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 53 Logical Axioms: 53]
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594>) <http://purl.obolibrary.org/obo/CHEBI_10545-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 52 Logical Axioms: 52]
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594>) <http://purl.obolibrary.org/obo/CHEBI_27594-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 53 Logical Axioms: 53]
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/GO_0005622-proto>
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005622>) <http://purl.obolibrary.org/obo/GO_0005622-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 44 Logical Axioms: 44]
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_59740-proto>
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_28616>) <http://purl.obolibrary.org/obo/CHEBI_46629-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 41 Logical Axioms: 41]
2013-10-16 19:48:11,802 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_28616>) <http://purl.obolibrary.org/obo/CHEBI_23004-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 42 Logical Axioms: 42]
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/CHEBI_36080>) <http://purl.obolibrary.org/obo/GO_0043161-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 37 Logical Axioms: 37]
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/CHEBI_36080>) <http://purl.obolibrary.org/obo/GO_0016567-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 38 Logical Axioms: 38]
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080>) <http://purl.obolibrary.org/obo/CHEBI_36080-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 39 Logical Axioms: 39]
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/CHEBI_36080>) <http://purl.obolibrary.org/obo/GO_0044257-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 40 Logical Axioms: 40]
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080>) <http://purl.obolibrary.org/obo/CHEBI_36080-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 41 Logical Axioms: 41]
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_36080>) <http://purl.obolibrary.org/obo/CHEBI_36080-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 41 Logical Axioms: 41]
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/GO_0005623-proto>
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0030877>) <http://purl.obolibrary.org/obo/GO_0043161-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 29 Logical Axioms: 29]
2013-10-16 19:48:11,803 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0030877>) <http://purl.obolibrary.org/obo/GO_0030877-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 30 Logical Axioms: 30]
2013-10-16 19:48:11,804 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/GO_0030877>) <http://purl.obolibrary.org/obo/GO_0030877-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 31 Logical Axioms: 31]
2013-10-16 19:48:11,804 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 19:48:11,804 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_23004-proto>
2013-10-16 19:48:11,804 INFO  (MinimalModelGenerator:801) ANONYMIZING:<http://purl.obolibrary.org/obo/CHEBI_46629-proto>
saving:http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox