2013-10-16 20:02:06,584 INFO  (ParserWrapper:186) parsing: ontology/extensions/x-signaling.owl
2013-10-16 20:02:06,586 INFO  (ParserWrapper:201) parsing: file:/Users/cjm/repos/go/experimental/lego/owl/gaf-derived/ontology/extensions/x-signaling.owl using uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@6f9bb25a
2013-10-16 20:02:06,588 INFO  (ParserWrapper:68) Start loading ontology: file:/Users/cjm/repos/go/experimental/lego/owl/gaf-derived/ontology/extensions/x-signaling.owl from: file:/Users/cjm/repos/go/experimental/lego/owl/gaf-derived/ontology/extensions/x-signaling.owl
2013-10-16 20:02:06,698 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/ro_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/ro_import.owl
2013-10-16 20:02:06,877 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/ro_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/ro_import.owl
2013-10-16 20:02:06,877 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/go-plus.owl from: file:/Users/cjm/repos/go/ontology/extensions/go-plus.owl
2013-10-16 20:02:06,880 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go.owl from: file:/Users/cjm/repos/go/ontology/go.owl
2013-10-16 20:02:15,801 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go.owl from: file:/Users/cjm/repos/go/ontology/go.owl
2013-10-16 20:02:15,813 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/chebi_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/chebi_import.owl
2013-10-16 20:02:16,204 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/chebi_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/chebi_import.owl
2013-10-16 20:02:16,212 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/cl_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/cl_import.owl
2013-10-16 20:02:16,240 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/cl_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/cl_import.owl
2013-10-16 20:02:16,250 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/po_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/po_import.owl
2013-10-16 20:02:16,266 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/po_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/po_import.owl
2013-10-16 20:02:16,274 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-taxon-importer.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-taxon-importer.owl
2013-10-16 20:02:16,276 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-taxon.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-taxon.owl
2013-10-16 20:02:16,359 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-taxon.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-taxon.owl
2013-10-16 20:02:16,360 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/ncbitaxon_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/ncbitaxon_import.owl
2013-10-16 20:02:16,372 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/ncbitaxon_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/ncbitaxon_import.owl
2013-10-16 20:02:16,372 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-disjoint.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-disjoint.owl
2013-10-16 20:02:16,390 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-disjoint.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-disjoint.owl
2013-10-16 20:02:16,397 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-taxon-importer.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-taxon-importer.owl
2013-10-16 20:02:16,961 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/go-plus.owl from: file:/Users/cjm/repos/go/ontology/extensions/go-plus.owl
2013-10-16 20:02:16,961 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-mf-protein.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-mf-protein.owl
2013-10-16 20:02:16,977 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-mf-protein.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-mf-protein.owl
2013-10-16 20:02:16,978 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-bp-protein.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-bp-protein.owl
2013-10-16 20:02:16,983 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-bp-protein.owl from: file:/Users/cjm/repos/go/ontology/extensions/x-bp-protein.owl
2013-10-16 20:02:16,983 INFO  (ParserWrapper:68) Start loading ontology: http://purl.obolibrary.org/obo/go/extensions/pr_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/pr_import.owl
2013-10-16 20:02:16,991 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/pr_import.owl from: file:/Users/cjm/repos/go/ontology/extensions/pr_import.owl
2013-10-16 20:02:17,052 INFO  (ParserWrapper:75) Finished loading ontology: http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl from: file:/Users/cjm/repos/go/experimental/lego/owl/gaf-derived/ontology/extensions/x-signaling.owl
2013-10-16 20:02:17,253 INFO  (OWLGraphWrapperBasic:209) Adding 468055 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go.owl>) VersionIRI(<http://purl.obolibrary.org/obo/go/2013-10-16/go.owl>))) [Axioms: 468055 Logical Axioms: 86956]
2013-10-16 20:02:18,045 INFO  (OWLGraphWrapperBasic:209) Adding 2062 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-taxon.owl>))) [Axioms: 2062 Logical Axioms: 501]
2013-10-16 20:02:18,050 INFO  (OWLGraphWrapperBasic:209) Adding 314 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein.owl>))) [Axioms: 314 Logical Axioms: 71]
2013-10-16 20:02:18,060 INFO  (OWLGraphWrapperBasic:209) Adding 26328 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/go-plus.owl>))) [Axioms: 26328 Logical Axioms: 7677]
2013-10-16 20:02:18,109 INFO  (OWLGraphWrapperBasic:209) Adding 0 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-taxon-importer.owl>))) [Axioms: 0 Logical Axioms: 0]
2013-10-16 20:02:18,109 INFO  (OWLGraphWrapperBasic:209) Adding 2142 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/cl_import.owl>))) [Axioms: 2142 Logical Axioms: 987]
2013-10-16 20:02:18,111 INFO  (OWLGraphWrapperBasic:209) Adding 954 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/ncbitaxon_import.owl>))) [Axioms: 954 Logical Axioms: 193]
2013-10-16 20:02:18,113 INFO  (OWLGraphWrapperBasic:209) Adding 94 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-disjoint.owl>))) [Axioms: 94 Logical Axioms: 45]
2013-10-16 20:02:18,113 INFO  (OWLGraphWrapperBasic:209) Adding 1241 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-mf-protein.owl>))) [Axioms: 1241 Logical Axioms: 313]
2013-10-16 20:02:18,115 INFO  (OWLGraphWrapperBasic:209) Adding 1004 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/po_import.owl>))) [Axioms: 1004 Logical Axioms: 486]
2013-10-16 20:02:18,116 INFO  (OWLGraphWrapperBasic:209) Adding 978 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/pr_import.owl>))) [Axioms: 978 Logical Axioms: 325]
2013-10-16 20:02:18,117 INFO  (OWLGraphWrapperBasic:209) Adding 1422 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/ro_import.owl>))) [Axioms: 1422 Logical Axioms: 362]
2013-10-16 20:02:18,128 INFO  (OWLGraphWrapperBasic:209) Adding 29902 from Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/chebi_import.owl>))) [Axioms: 29902 Logical Axioms: 18872]
2013-10-16 20:02:18,338 INFO  (MinimalModelGenerator:207) Creating abox ontology. mgr = uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@6f9bb25a
2013-10-16 20:02:18,338 INFO  (MinimalModelGenerator:221) Creating query ontology
2013-10-16 20:02:18,338 INFO  (MinimalModelGenerator:232) manager(T) = uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@6f9bb25a
2013-10-16 20:02:18,338 INFO  (MinimalModelGenerator:233) manager(A) = uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@6f9bb25a
2013-10-16 20:02:18,338 INFO  (MinimalModelGenerator:234) manager(Q) = uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@6f9bb25a
2013-10-16 20:02:18,446 INFO  (MinimalModelGenerator:250) Creating reasoner on Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__query>))) [Axioms: 0 Logical Axioms: 0] ImportsClosure=[Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 0 Logical Axioms: 0], Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__query>))) [Axioms: 0 Logical Axioms: 0], Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl>))) [Axioms: 513390 Logical Axioms: 116860]]
2013-10-16 20:02:18,521 INFO  (Reasoner:117) ELK reasoner was created
2013-10-16 20:02:18,809 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002295> <http://purl.obolibrary.org/obo/CARO_0000003>)
2013-10-16 20:02:18,899 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:18,971 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/BFO_0000054> <http://purl.obolibrary.org/obo/BFO_0000007>)
2013-10-16 20:02:19,066 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,080 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,082 WARN  (ChangeIndexingProcessor:66) ELK does not support SymmetricObjectProperty. Axiom ignored:
SymmetricObjectProperty(<http://purl.obolibrary.org/obo/RO_0002371>)
2013-10-16 20:02:19,096 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002222> <http://purl.obolibrary.org/obo/BFO_0000003>)
2013-10-16 20:02:19,104 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002337> <http://purl.obolibrary.org/obo/BFO_0000002>)
2013-10-16 20:02:19,106 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002220> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 20:02:19,139 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/BFO_0000062> <http://purl.obolibrary.org/obo/BFO_0000003>)
2013-10-16 20:02:19,140 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/BFO_0000063> <http://purl.obolibrary.org/obo/BFO_0000003>)
2013-10-16 20:02:19,147 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 20:02:19,248 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002101> <http://purl.obolibrary.org/obo/CARO_0001001>)
2013-10-16 20:02:19,263 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,283 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002202> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 20:02:19,285 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002204> <http://purl.obolibrary.org/obo/BFO_0000002>)
2013-10-16 20:02:19,289 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002205> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 20:02:19,291 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002206> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 20:02:19,299 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/BFO_0000007>)
2013-10-16 20:02:19,301 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002214> <http://purl.obolibrary.org/obo/BFO_0000002>)
2013-10-16 20:02:19,325 WARN  (ChangeIndexingProcessor:66) ELK does not support DisjointUnion. Axiom ignored:
DisjointUnion(<http://purl.obolibrary.org/obo/GO_0008150> <http://purl.obolibrary.org/obo/GO_0044699> <http://purl.obolibrary.org/obo/GO_0051704>)
2013-10-16 20:02:19,335 WARN  (ChangeIndexingProcessor:66) ELK does not support FunctionalObjectProperty. Axiom ignored:
FunctionalObjectProperty(<http://purl.obolibrary.org/obo/RO_0002201>)
2013-10-16 20:02:19,358 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002091> <http://purl.obolibrary.org/obo/BFO_0000003>)
2013-10-16 20:02:19,378 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0001025> <http://purl.obolibrary.org/obo/RO_0001015>)
2013-10-16 20:02:19,381 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0001001> <http://purl.obolibrary.org/obo/RO_0001000>)
2013-10-16 20:02:19,383 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0001018> <http://purl.obolibrary.org/obo/RO_0001019>)
2013-10-16 20:02:19,386 WARN  (ChangeIndexingProcessor:66) ELK does not support IrreflexiveObjectProperty. Axiom ignored:
IrreflexiveObjectProperty(<http://purl.obolibrary.org/obo/RO_0002351>)
2013-10-16 20:02:19,392 WARN  (ChangeIndexingProcessor:66) ELK does not support SymmetricObjectProperty. Axiom ignored:
SymmetricObjectProperty(<http://purl.obolibrary.org/obo/RO_0002159>)
2013-10-16 20:02:19,392 WARN  (ChangeIndexingProcessor:66) ELK does not support SymmetricObjectProperty. Axiom ignored:
SymmetricObjectProperty(<http://purl.obolibrary.org/obo/RO_0002158>)
2013-10-16 20:02:19,437 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectAllValuesFrom. Axiom ignored:
SubClassOf(<http://purl.obolibrary.org/obo/CL_0000000> ObjectAllValuesFrom(<http://purl.obolibrary.org/obo/RO_0002207> <http://purl.obolibrary.org/obo/CL_0000000>))
2013-10-16 20:02:19,447 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/RO_0000056>)
2013-10-16 20:02:19,448 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0000053> <http://purl.obolibrary.org/obo/RO_0000052>)
2013-10-16 20:02:19,455 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,460 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,463 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002207> ObjectUnionOf(<http://purl.obolibrary.org/obo/CARO_0010000> <http://purl.obolibrary.org/obo/CL_0000000>))
2013-10-16 20:02:19,488 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
SubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0001025> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0001025>)) <http://purl.obolibrary.org/obo/RO_0002379>)
2013-10-16 20:02:19,498 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002132> ObjectUnionOf(<http://purl.obolibrary.org/obo/CL_0000540> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CL_0000540>)))
2013-10-16 20:02:19,503 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002150> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 20:02:19,511 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,514 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectAllValuesFrom. Axiom ignored:
SubClassOf(<http://purl.obolibrary.org/obo/CARO_0010000> ObjectAllValuesFrom(<http://purl.obolibrary.org/obo/RO_0002207> <http://purl.obolibrary.org/obo/CARO_0010000>))
2013-10-16 20:02:19,526 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002162> <http://purl.obolibrary.org/obo/BFO_0000004>)
2013-10-16 20:02:19,549 WARN  (ChangeIndexingProcessor:66) ELK does not support DisjointUnion. Axiom ignored:
DisjointUnion(<http://purl.obolibrary.org/obo/GO_0016055> <http://purl.obolibrary.org/obo/GO_0035567> <http://purl.obolibrary.org/obo/GO_0060070>)
2013-10-16 20:02:19,552 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002103> ObjectUnionOf(<http://purl.obolibrary.org/obo/CL_0000540> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CL_0000540>)))
2013-10-16 20:02:19,584 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002303> <http://purl.obolibrary.org/obo/ENVO_0002036>)
2013-10-16 20:02:19,606 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002333> <http://purl.obolibrary.org/obo/RO_0002327>)
2013-10-16 20:02:19,611 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002350> <http://purl.obolibrary.org/obo/RO_0002351>)
2013-10-16 20:02:19,624 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,644 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002315> <http://purl.obolibrary.org/obo/CL_0000000>)
2013-10-16 20:02:19,663 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,683 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,723 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,750 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002006> <http://purl.obolibrary.org/obo/RO_0002130>)
2013-10-16 20:02:19,751 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002005> <http://purl.obolibrary.org/obo/RO_0002134>)
2013-10-16 20:02:19,756 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002349> <http://purl.obolibrary.org/obo/CL_0000000>)
2013-10-16 20:02:19,759 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002348> <http://purl.obolibrary.org/obo/CL_0000000>)
2013-10-16 20:02:19,762 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002087> <http://purl.obolibrary.org/obo/RO_0002090>)
2013-10-16 20:02:19,762 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002085> <http://purl.obolibrary.org/obo/RO_0002092>)
2013-10-16 20:02:19,762 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002084> <http://purl.obolibrary.org/obo/RO_0002093>)
2013-10-16 20:02:19,762 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002088> <http://purl.obolibrary.org/obo/RO_0002091>)
2013-10-16 20:02:19,771 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002107> <http://purl.obolibrary.org/obo/RO_0002108>)
2013-10-16 20:02:19,772 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002105> <http://purl.obolibrary.org/obo/RO_0002109>)
2013-10-16 20:02:19,787 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0003000> <http://purl.obolibrary.org/obo/BFO_0000040>)
2013-10-16 20:02:19,788 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0003001> <http://purl.obolibrary.org/obo/BFO_0000040>)
2013-10-16 20:02:19,792 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0002378> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002376>))
2013-10-16 20:02:19,796 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/BFO_0000050>)
2013-10-16 20:02:19,797 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/BFO_0000055> <http://purl.obolibrary.org/obo/BFO_0000054>)
2013-10-16 20:02:19,798 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/BFO_0000062> <http://purl.obolibrary.org/obo/BFO_0000063>)
2013-10-16 20:02:19,798 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/BFO_0000067>)
2013-10-16 20:02:19,805 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,809 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002002> <http://purl.obolibrary.org/obo/RO_0002000>)
2013-10-16 20:02:19,810 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0003000> <http://purl.obolibrary.org/obo/RO_0003001>)
2013-10-16 20:02:19,825 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002293> <http://purl.obolibrary.org/obo/RO_0002291>)
2013-10-16 20:02:19,828 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0002333> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>))
2013-10-16 20:02:19,830 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002286> <http://purl.obolibrary.org/obo/RO_0002258>)
2013-10-16 20:02:19,832 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002257> <http://purl.obolibrary.org/obo/RO_0002256>)
2013-10-16 20:02:19,835 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002229> <http://purl.obolibrary.org/obo/RO_0002230>)
2013-10-16 20:02:19,836 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002221> <http://purl.obolibrary.org/obo/RO_0002219>)
2013-10-16 20:02:19,837 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002224> <http://purl.obolibrary.org/obo/RO_0002223>)
2013-10-16 20:02:19,838 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002292> <http://purl.obolibrary.org/obo/RO_0002206>)
2013-10-16 20:02:19,838 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002255> <http://purl.obolibrary.org/obo/RO_0002254>)
2013-10-16 20:02:19,843 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002217> <http://purl.obolibrary.org/obo/RO_0002218>)
2013-10-16 20:02:19,843 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002201> <http://purl.obolibrary.org/obo/RO_0002200>)
2013-10-16 20:02:19,844 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002203> <http://purl.obolibrary.org/obo/RO_0002202>)
2013-10-16 20:02:19,844 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002205> <http://purl.obolibrary.org/obo/RO_0002204>)
2013-10-16 20:02:19,861 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002210> <http://purl.obolibrary.org/obo/RO_0002207>)
2013-10-16 20:02:19,865 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,868 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002353> <http://purl.obolibrary.org/obo/RO_0002234>)
2013-10-16 20:02:19,868 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/RO_0002233>)
2013-10-16 20:02:19,871 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002354> <http://purl.obolibrary.org/obo/RO_0002297>)
2013-10-16 20:02:19,874 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002335> <http://purl.obolibrary.org/obo/RO_0002212>)
2013-10-16 20:02:19,874 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002336> <http://purl.obolibrary.org/obo/RO_0002213>)
2013-10-16 20:02:19,874 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002334> <http://purl.obolibrary.org/obo/RO_0002211>)
2013-10-16 20:02:19,879 WARN  (ChangeIndexingProcessor:66) ELK does not support DisjointObjectProperties. Axiom ignored:
DisjointObjectProperties(<http://purl.obolibrary.org/obo/RO_0002378> <http://purl.obolibrary.org/obo/RO_0002382>)
2013-10-16 20:02:19,879 WARN  (ChangeIndexingProcessor:66) ELK does not support DisjointObjectProperties. Axiom ignored:
DisjointObjectProperties(<http://purl.obolibrary.org/obo/RO_0002378> <http://purl.obolibrary.org/obo/RO_0002383>)
2013-10-16 20:02:19,894 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/BFO_0000002>)
2013-10-16 20:02:19,895 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/BFO_0000003>)
2013-10-16 20:02:19,895 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002156> <http://purl.obolibrary.org/obo/RO_0002157>)
2013-10-16 20:02:19,900 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002132> <http://purl.obolibrary.org/obo/RO_0002101>)
2013-10-16 20:02:19,901 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002106> <http://purl.obolibrary.org/obo/RO_0002112>)
2013-10-16 20:02:19,901 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002110> <http://purl.obolibrary.org/obo/RO_0002102>)
2013-10-16 20:02:19,902 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002114> <http://purl.obolibrary.org/obo/RO_0002115>)
2013-10-16 20:02:19,902 WARN  (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored:
InverseObjectProperties(<http://purl.obolibrary.org/obo/RO_0002103> <http://purl.obolibrary.org/obo/RO_0002120>)
2013-10-16 20:02:19,918 WARN  (IndexedObjectUnionOf:92) ELK does not support positive occurrences of ObjectUnionOf. Reasoning might be incomplete!
2013-10-16 20:02:19,921 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectPropertyRange. Axiom ignored:
ObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002356> <http://purl.obolibrary.org/obo/CL_0000000>)
2013-10-16 20:02:19,956 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0030877> // src=null via null
2013-10-16 20:02:19,958 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0030877> <http://purl.obolibrary.org/obo/GO_0030877-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 0 Logical Axioms: 0]
2013-10-16 20:02:19,958 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 20:02:19,958 INFO  (MinimalModelGenerator:1091) Finding all nested anonymous expressions
2013-10-16 20:02:20,837 INFO  (MinimalModelGenerator:1103) TOTAL axioms in QMAP: 32305
2013-10-16 20:02:20,924 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:20,928 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:21,218 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 289 ms
2013-10-16 20:02:21,218 INFO  (LoggingStageExecutor:70) Property Saturation Initialization started
2013-10-16 20:02:21,219 INFO  (AbstractReasonerStage:179) Property Saturation Initialization using 8 workers
2013-10-16 20:02:21,219 INFO  (LoggingStageExecutor:103) Property Saturation Initialization finished in 1 ms
2013-10-16 20:02:21,219 INFO  (LoggingStageExecutor:70) Reflexive Property Computation started
2013-10-16 20:02:21,222 INFO  (AbstractReasonerStage:179) Reflexive Property Computation using 8 workers
2013-10-16 20:02:21,224 INFO  (LoggingStageExecutor:103) Reflexive Property Computation finished in 4 ms
2013-10-16 20:02:21,224 INFO  (LoggingStageExecutor:70) Object Property Hierarchy and Composition Computation started
2013-10-16 20:02:21,226 INFO  (AbstractReasonerStage:179) Object Property Hierarchy and Composition Computation using 8 workers
2013-10-16 20:02:21,277 INFO  (LoggingStageExecutor:103) Object Property Hierarchy and Composition Computation finished in 53 ms
2013-10-16 20:02:21,277 INFO  (LoggingStageExecutor:70) Context Initialization started
2013-10-16 20:02:21,278 INFO  (AbstractReasonerStage:179) Context Initialization using 8 workers
2013-10-16 20:02:21,278 INFO  (LoggingStageExecutor:103) Context Initialization finished in 0 ms
2013-10-16 20:02:21,280 INFO  (LoggingStageExecutor:70) Consistency Checking started
2013-10-16 20:02:21,284 INFO  (AbstractReasonerStage:179) Consistency Checking using 8 workers
2013-10-16 20:02:21,346 INFO  (LoggingStageExecutor:103) Consistency Checking finished in 66 ms
2013-10-16 20:02:21,347 INFO  (LoggingStageExecutor:70) Class Taxonomy Computation started
2013-10-16 20:02:21,352 INFO  (AbstractReasonerStage:179) Class Taxonomy Computation using 8 workers
2013-10-16 20:02:24,226 INFO  (LoggingStageExecutor:103) Class Taxonomy Computation finished in 2879 ms
2013-10-16 20:02:24,226 INFO  (LoggingStageExecutor:70) Instance Taxonomy Computation started
2013-10-16 20:02:24,240 INFO  (InstanceTaxonomyComputationStage:71) Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:24,240 INFO  (AbstractReasonerStage:179) Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:24,251 INFO  (LoggingStageExecutor:103) Instance Taxonomy Computation finished in 24 ms
2013-10-16 20:02:24,254 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0030877-proto> is 24
2013-10-16 20:02:24,254 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0030877-proto> is 6
2013-10-16 20:02:24,255 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005737>)
2013-10-16 20:02:24,257 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,258 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,258 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,260 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,261 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,264 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 3 ms
2013-10-16 20:02:24,265 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,267 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,273 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 8 ms
2013-10-16 20:02:24,274 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,275 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,280 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 6 ms
2013-10-16 20:02:24,281 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,282 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,286 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 5 ms
2013-10-16 20:02:24,286 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,287 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,320 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 33 ms
2013-10-16 20:02:24,320 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,320 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,322 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 2 ms
2013-10-16 20:02:24,322 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,324 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,325 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 2 ms
2013-10-16 20:02:24,325 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,326 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,343 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 17 ms
2013-10-16 20:02:24,343 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,344 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,347 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 4 ms
2013-10-16 20:02:24,347 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,348 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,348 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,348 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,348 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,350 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 1 ms
2013-10-16 20:02:24,350 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,351 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,351 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,351 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,351 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,353 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 2 ms
2013-10-16 20:02:24,353 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,353 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,355 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 2 ms
2013-10-16 20:02:24,356 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,356 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,356 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,356 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,356 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,361 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 4 ms
2013-10-16 20:02:24,361 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,361 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,361 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,361 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,362 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,379 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 17 ms
2013-10-16 20:02:24,379 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,379 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,383 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 4 ms
2013-10-16 20:02:24,384 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,384 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,385 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 1 ms
2013-10-16 20:02:24,386 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,386 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,389 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 3 ms
2013-10-16 20:02:24,389 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,389 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,416 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 26 ms
2013-10-16 20:02:24,428 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,429 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,432 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 3 ms
2013-10-16 20:02:24,432 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,433 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,436 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 3 ms
2013-10-16 20:02:24,436 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,436 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,437 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,437 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,437 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,440 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 2 ms
2013-10-16 20:02:24,440 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,440 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,440 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,441 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,441 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,457 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:24,458 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,458 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,461 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 3 ms
2013-10-16 20:02:24,461 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0005737> // src=<http://purl.obolibrary.org/obo/GO_0030877-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 20:02:24,462 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0005737> <http://purl.obolibrary.org/obo/GO_0005737-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 1 Logical Axioms: 1]
2013-10-16 20:02:24,462 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0005737-proto>
2013-10-16 20:02:24,463 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005737-proto> <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 20:02:24,464 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005737-proto> <http://purl.obolibrary.org/obo/GO_0030877-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0030877-proto> <http://purl.obolibrary.org/obo/GO_0005737-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 2 Logical Axioms: 2]
2013-10-16 20:02:24,464 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,464 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,476 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 11 ms
2013-10-16 20:02:24,476 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,477 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,478 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 1 ms
2013-10-16 20:02:24,479 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,479 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,479 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,479 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,479 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,481 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 1 ms
2013-10-16 20:02:24,481 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,481 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,485 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 3 ms
2013-10-16 20:02:24,485 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,485 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,513 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 28 ms
2013-10-16 20:02:24,514 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,514 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,519 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 5 ms
2013-10-16 20:02:24,520 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,520 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,521 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,521 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,521 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,540 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 19 ms
2013-10-16 20:02:24,540 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,541 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,541 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,542 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:24,542 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:24,543 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 1 ms
2013-10-16 20:02:24,544 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0005737-proto> is 14
2013-10-16 20:02:24,544 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0005737-proto> is 2
2013-10-16 20:02:24,544 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005622>)
2013-10-16 20:02:24,545 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,545 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,545 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,545 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,546 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,547 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 1 ms
2013-10-16 20:02:24,548 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,548 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,548 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,548 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,549 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,550 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 1 ms
2013-10-16 20:02:24,551 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,551 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,552 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,552 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,552 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,579 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 27 ms
2013-10-16 20:02:24,579 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,580 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,582 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 2 ms
2013-10-16 20:02:24,582 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,582 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,583 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,583 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,583 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,599 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:24,599 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,599 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,601 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 1 ms
2013-10-16 20:02:24,602 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,602 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,602 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,602 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,602 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,605 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 3 ms
2013-10-16 20:02:24,605 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,606 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,606 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,606 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,606 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,608 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 1 ms
2013-10-16 20:02:24,608 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,608 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,611 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 2 ms
2013-10-16 20:02:24,611 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,611 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,611 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,611 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,611 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,612 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,612 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,612 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,612 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,612 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,612 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,629 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:24,629 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,629 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,631 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 1 ms
2013-10-16 20:02:24,631 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,631 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,631 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,632 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,632 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,632 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,632 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,632 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,650 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 17 ms
2013-10-16 20:02:24,659 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,659 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,660 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,660 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,660 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,660 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,660 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,660 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,661 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,661 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,661 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,661 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,661 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,661 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,662 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,662 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,662 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,679 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:24,679 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,679 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,679 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,680 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0005622> // src=<http://purl.obolibrary.org/obo/GO_0005737-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 20:02:24,680 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0005622> <http://purl.obolibrary.org/obo/GO_0005622-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 4 Logical Axioms: 4]
2013-10-16 20:02:24,680 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0005622-proto>
2013-10-16 20:02:24,680 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0005737-proto>
2013-10-16 20:02:24,680 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005737-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0005737-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 5 Logical Axioms: 5]
2013-10-16 20:02:24,680 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,681 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,690 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 20:02:24,690 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,690 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,690 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,690 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,690 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,691 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,691 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,691 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,691 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,691 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,692 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,692 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,692 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,692 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,708 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 16 ms
2013-10-16 20:02:24,709 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,709 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,709 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,709 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,709 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,710 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,710 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,710 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,726 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:24,726 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,726 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,727 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,727 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:24,727 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:24,727 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:24,727 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0005622-proto> is 12
2013-10-16 20:02:24,728 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0005622-proto> is 1
2013-10-16 20:02:24,728 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005623>)
2013-10-16 20:02:24,728 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,728 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,729 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,729 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,729 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,729 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,729 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,729 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,730 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,730 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,730 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,730 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,730 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,730 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,731 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,731 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,731 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,739 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 8 ms
2013-10-16 20:02:24,740 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,740 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,740 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,740 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,741 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,741 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,741 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,741 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,757 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:24,757 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,757 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,758 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,758 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,758 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,758 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,758 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,758 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,759 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,759 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,759 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,759 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,759 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,759 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,760 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,760 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,760 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,760 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,760 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,760 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,760 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,761 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,761 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,761 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,761 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,761 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,761 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,761 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,762 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,776 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:24,776 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,777 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,777 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,777 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,777 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,777 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,777 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,777 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,778 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,778 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,778 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,784 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:24,793 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,793 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,794 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,794 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,794 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,794 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,794 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,794 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,795 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,795 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,795 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,795 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,795 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,795 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,795 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,796 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,796 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,810 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:24,810 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,810 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,810 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,811 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0005623> // src=<http://purl.obolibrary.org/obo/GO_0005622-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 20:02:24,811 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0005623> <http://purl.obolibrary.org/obo/GO_0005623-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 7 Logical Axioms: 7]
2013-10-16 20:02:24,811 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0005623-proto>
2013-10-16 20:02:24,811 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>
2013-10-16 20:02:24,811 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0005623-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 8 Logical Axioms: 8]
2013-10-16 20:02:24,811 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,811 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,818 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:24,818 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,818 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,819 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,819 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,819 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,819 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,819 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,819 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,819 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,820 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,820 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,820 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,820 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,820 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,826 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:24,826 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,826 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,826 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,826 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,826 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,827 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,827 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,827 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,841 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:24,841 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,841 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,841 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,841 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:24,841 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:24,842 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:24,842 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0005623-proto> is 5
2013-10-16 20:02:24,842 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0005623-proto> is 1
2013-10-16 20:02:24,842 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/NCBITaxon_131567>)
2013-10-16 20:02:24,842 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,842 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,842 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>)))
2013-10-16 20:02:24,843 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,843 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,843 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,843 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,843 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,843 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,843 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,844 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,844 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,844 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,844 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,844 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,844 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,845 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,845 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,845 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,845 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,845 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,845 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,845 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,845 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,846 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,846 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,846 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,860 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:24,860 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,860 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,860 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,860 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,860 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,861 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>)))
2013-10-16 20:02:24,861 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>)))
2013-10-16 20:02:24,861 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,861 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,861 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,861 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,861 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,861 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,862 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,862 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,862 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,862 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,862 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,862 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,863 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,863 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,863 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,863 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,863 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,863 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,863 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,863 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,863 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,864 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,864 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,864 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,877 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:24,878 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,878 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,878 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,878 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,878 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,878 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/NCBITaxon_131567> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002160>) <http://purl.obolibrary.org/obo/GO_0005623>)))
2013-10-16 20:02:24,878 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,879 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,879 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,879 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,879 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,879 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,879 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,888 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,888 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,888 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,888 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,888 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,888 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,889 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,889 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,889 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,889 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,889 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,889 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,889 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,889 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,890 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,890 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,890 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,904 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:24,904 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,904 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,904 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,905 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/NCBITaxon_131567> // src=<http://purl.obolibrary.org/obo/GO_0005623-proto> via <http://purl.obolibrary.org/obo/RO_0002160>
2013-10-16 20:02:24,905 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/NCBITaxon_131567> <http://purl.obolibrary.org/obo/NCBITaxon_131567-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 10 Logical Axioms: 10]
2013-10-16 20:02:24,905 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/NCBITaxon_131567-proto>
2013-10-16 20:02:24,905 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/NCBITaxon_131567-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 11 Logical Axioms: 11]
2013-10-16 20:02:24,905 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,905 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,912 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:24,912 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,912 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,912 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,912 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,912 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,913 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,913 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,913 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,913 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,913 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,913 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,913 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,914 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,914 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,919 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:24,919 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,919 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,920 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,920 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,920 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,920 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,920 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,920 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,934 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:24,934 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,934 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,935 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,935 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:24,935 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:24,935 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:24,935 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/NCBITaxon_131567-proto> is 3
2013-10-16 20:02:24,935 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/NCBITaxon_131567-proto> is 0
2013-10-16 20:02:24,935 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))))
2013-10-16 20:02:24,936 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,936 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,936 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>))> ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>)))
2013-10-16 20:02:24,936 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,936 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,936 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,936 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,936 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,937 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,937 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,937 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,937 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,937 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,937 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,937 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,938 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,938 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,938 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,938 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,938 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,938 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,938 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,938 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,939 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,939 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,939 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,939 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,953 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:24,953 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,953 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,953 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,953 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,953 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,954 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>))> ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>)))
2013-10-16 20:02:24,954 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>))> ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>)))
2013-10-16 20:02:24,954 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,954 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,954 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,954 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,954 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,955 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,955 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,955 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,955 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,955 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,955 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,955 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,955 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,956 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,956 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,956 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,956 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,956 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,956 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,956 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,956 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,957 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,957 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,957 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,970 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:24,971 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,971 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,971 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,971 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:24,971 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:24,971 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>))> ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>) <http://purl.obolibrary.org/obo/GO_0030877>)))
2013-10-16 20:02:24,971 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:24,972 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:24,972 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:24,972 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:24,972 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:24,972 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:24,972 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:24,981 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:24,981 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:24,981 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:24,981 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:24,982 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:24,982 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:24,982 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:24,982 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:24,982 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:24,982 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:24,982 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:24,983 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:24,983 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:24,983 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:24,983 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:24,983 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:24,983 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:24,999 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:24,999 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:24,999 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:24,999 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:24,999 INFO  (MinimalModelGenerator:389) GNI type:ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))) // src=<http://purl.obolibrary.org/obo/GO_0030877-proto> via <http://purl.obolibrary.org/obo/RO_0002215>
2013-10-16 20:02:25,000 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0004842> <http://purl.obolibrary.org/obo/GO_0004842-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 12 Logical Axioms: 12]
2013-10-16 20:02:25,000 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0004842-proto>
2013-10-16 20:02:25,000 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0030877-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 13 Logical Axioms: 13]
2013-10-16 20:02:25,000 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,000 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,007 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:25,007 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,007 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,007 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,007 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,007 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,008 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,008 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,008 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,008 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,008 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,008 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,008 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,008 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,009 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,014 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:25,014 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,014 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,015 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,015 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,015 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,015 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,015 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,015 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,029 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:25,030 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,030 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,030 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,030 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:25,030 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:25,030 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:25,031 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0004842-proto> is 11
2013-10-16 20:02:25,031 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0004842-proto> is 3
2013-10-16 20:02:25,031 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0016567>)
2013-10-16 20:02:25,031 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,031 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,031 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,031 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,031 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,032 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,032 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,032 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,032 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,032 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,032 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,033 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,033 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,033 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,033 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,033 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,033 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,040 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 20:02:25,040 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,040 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,040 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,041 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,041 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,041 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,041 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,041 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,055 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:25,056 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,056 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,056 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,056 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,056 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,056 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,057 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,057 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,057 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,057 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,057 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,057 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,057 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,057 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,058 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,058 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,058 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,058 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,058 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,058 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,059 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,059 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,059 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,059 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,059 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,059 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,059 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,059 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,060 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,075 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:25,076 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,076 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,076 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,076 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,076 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,076 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,076 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,077 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,077 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,077 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,077 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,084 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 7 ms
2013-10-16 20:02:25,093 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,093 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,094 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,094 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,094 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,094 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,094 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,094 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,095 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,095 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,095 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,095 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,095 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,095 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,095 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,096 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,096 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,110 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:25,111 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,111 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,111 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,111 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0016567> // src=<http://purl.obolibrary.org/obo/GO_0004842-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 20:02:25,111 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0016567> <http://purl.obolibrary.org/obo/GO_0016567-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 14 Logical Axioms: 14]
2013-10-16 20:02:25,112 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0016567-proto>
2013-10-16 20:02:25,112 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0016567-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>
2013-10-16 20:02:25,112 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0016567-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0004842-proto> <http://purl.obolibrary.org/obo/GO_0016567-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 15 Logical Axioms: 15]
2013-10-16 20:02:25,112 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,112 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,118 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:25,119 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,119 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,119 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,119 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,119 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,119 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,120 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,120 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,120 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,120 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,120 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,120 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,120 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,120 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,126 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:25,126 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,126 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,126 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,126 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,126 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,127 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,127 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,127 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,141 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,141 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,141 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,141 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,141 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:25,141 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:25,142 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:25,142 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0016567-proto> is 22
2013-10-16 20:02:25,142 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0016567-proto> is 3
2013-10-16 20:02:25,143 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/CHEBI_36080>)
2013-10-16 20:02:25,143 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,143 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,143 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,143 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,143 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,143 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,143 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,144 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,144 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,144 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,144 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,144 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,144 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,144 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,145 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,145 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,145 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,152 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 20:02:25,152 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,152 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,152 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,153 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,153 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,153 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,153 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,153 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,168 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:25,168 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,168 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,168 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,169 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,169 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,169 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,169 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,169 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,169 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,169 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,170 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,170 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,170 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,170 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,170 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,170 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,170 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,170 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,171 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,171 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,171 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,171 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,171 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,171 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,171 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,171 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,172 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,172 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,172 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,185 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,186 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,186 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,186 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,186 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,186 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,186 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,186 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,186 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,187 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,187 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,187 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,192 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:25,201 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,201 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,202 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,202 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,202 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,202 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,203 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,203 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,203 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,203 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,203 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,203 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,203 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,203 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,204 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,204 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,204 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,218 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,218 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,218 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,218 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,218 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_36080> // src=<http://purl.obolibrary.org/obo/GO_0016567-proto> via <http://purl.obolibrary.org/obo/RO_0000057>
2013-10-16 20:02:25,219 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_36080> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 17 Logical Axioms: 17]
2013-10-16 20:02:25,219 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 20:02:25,219 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0016567-proto>
2013-10-16 20:02:25,219 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0016567-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0016567-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 18 Logical Axioms: 18]
2013-10-16 20:02:25,219 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,219 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,226 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:25,226 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,227 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,227 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,227 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,227 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,227 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,227 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,227 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,228 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,228 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,228 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,228 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,228 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,228 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,234 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:25,234 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,234 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,234 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,234 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,234 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,235 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,235 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,235 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,249 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,249 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,249 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,249 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,249 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:25,249 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:25,250 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:25,250 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_36080-proto> is 35
2013-10-16 20:02:25,250 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_36080-proto> is 18
2013-10-16 20:02:25,251 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541>)
2013-10-16 20:02:25,251 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,251 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,252 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,252 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,252 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,252 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,252 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,252 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,252 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,253 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,253 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,253 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,253 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,253 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,253 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,253 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,254 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,258 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:25,259 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,259 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,259 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,259 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,259 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,259 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,260 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,260 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,274 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,274 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,274 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,274 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,274 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,274 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,275 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,275 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,275 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,275 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,275 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,275 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,275 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,276 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,276 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,276 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,276 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,276 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,276 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,276 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,276 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,277 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,277 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,277 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,277 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,277 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,277 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,277 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,277 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,278 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,293 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:25,293 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,293 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,293 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,293 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,293 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,294 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,294 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,294 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,294 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,294 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,294 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,299 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:25,308 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,308 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,309 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,309 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,309 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,309 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,309 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,309 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,310 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,310 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,310 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,310 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,310 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,310 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,310 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,310 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,311 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,325 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:25,325 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,325 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,325 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,325 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16541> // src=<http://purl.obolibrary.org/obo/CHEBI_36080-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:25,326 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_16541> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 20 Logical Axioms: 20]
2013-10-16 20:02:25,326 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:25,326 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 20:02:25,326 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 21 Logical Axioms: 21]
2013-10-16 20:02:25,326 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,326 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,333 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:25,333 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,333 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,333 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,334 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,334 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,334 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,334 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,334 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,334 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,334 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,334 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,335 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,335 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,335 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,341 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:25,341 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,341 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,341 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,342 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,342 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,342 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,342 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,342 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,358 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:25,358 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,358 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,358 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,358 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:25,358 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:25,359 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:25,359 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_16541-proto> is 48
2013-10-16 20:02:25,359 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_16541-proto> is 19
2013-10-16 20:02:25,360 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16670>)
2013-10-16 20:02:25,360 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,360 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,361 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:25,361 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,361 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,361 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,361 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,361 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,361 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,361 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,362 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,362 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,362 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,362 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,362 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,362 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,362 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,362 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,363 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,363 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,363 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,363 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,363 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,363 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,363 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,363 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,364 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,377 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,377 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,378 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,378 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,378 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,378 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,378 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:25,378 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:25,378 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,379 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,379 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,379 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,379 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,379 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,379 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,379 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,380 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,380 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,380 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,380 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,380 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,380 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,380 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,381 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,381 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,381 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,381 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,381 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,381 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,381 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,381 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,382 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,395 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,395 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,396 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,396 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,396 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,396 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,396 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:25,396 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,396 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,396 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,397 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,397 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,397 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,397 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,405 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,406 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,406 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,406 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,406 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,406 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,406 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,406 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,407 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,407 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,407 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,407 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,407 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,407 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,407 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,407 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,408 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,421 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,422 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,422 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,422 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,422 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16670> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 20:02:25,422 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_16670> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 23 Logical Axioms: 23]
2013-10-16 20:02:25,422 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 20:02:25,423 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 24 Logical Axioms: 24]
2013-10-16 20:02:25,423 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,423 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,429 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:25,429 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,429 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,430 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,430 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,430 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,430 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,430 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,430 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,431 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,431 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,431 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,431 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,431 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,431 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,436 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:25,436 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,436 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,437 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,437 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,437 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,437 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,437 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,437 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,451 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,451 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,452 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,452 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,452 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:25,452 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:25,452 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:25,453 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_16670-proto> is 43
2013-10-16 20:02:25,453 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_16670-proto> is 18
2013-10-16 20:02:25,454 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16670>)
2013-10-16 20:02:25,454 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,454 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,454 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:25,454 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,454 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,454 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,454 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,455 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,455 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,455 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,455 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,455 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,455 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,455 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,456 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,456 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,456 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,456 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,456 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,456 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,456 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,457 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,457 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,457 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,457 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,457 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,457 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,471 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,471 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,471 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,472 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,472 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,472 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,472 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:25,472 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:25,472 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,472 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,472 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,473 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,473 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,473 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,473 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,473 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,473 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,473 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,474 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,474 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,474 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,474 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,474 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,474 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,474 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,474 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,475 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,475 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,475 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,475 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,475 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,475 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,489 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,489 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,489 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,489 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,490 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,490 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,490 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:25,490 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,490 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,490 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,490 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,490 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,490 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,491 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,499 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,499 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,500 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,500 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,500 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,500 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,500 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,500 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,500 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,501 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,501 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,501 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,501 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,501 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,501 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,501 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,501 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,515 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,515 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,516 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,516 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,516 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16670> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 20:02:25,516 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 25 Logical Axioms: 25]
2013-10-16 20:02:25,516 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 20:02:25,516 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,517 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,523 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:25,523 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:25,523 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,523 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,524 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,524 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,524 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,524 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,524 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,524 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,525 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,525 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,525 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,525 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,525 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,525 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,525 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,526 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,526 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,526 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,526 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,526 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,526 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,526 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,526 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,540 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,540 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,540 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,541 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,541 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,541 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,541 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:25,541 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:25,541 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,541 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,541 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,542 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,542 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,542 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,542 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,542 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,542 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,542 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,543 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,543 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,543 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,543 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,543 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,543 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,543 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,543 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,544 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,544 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,544 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,544 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,544 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,544 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,558 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,558 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,558 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,558 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,558 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,558 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,559 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:25,559 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,559 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,559 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,559 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,559 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,559 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,560 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,568 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,568 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,568 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,568 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,568 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,569 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,569 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,569 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,569 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,569 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,569 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,570 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,570 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,570 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,570 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,570 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,570 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,584 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:25,584 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,585 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,585 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,585 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/chebi#has_parent_hydride>
2013-10-16 20:02:25,585 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_16134> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 26 Logical Axioms: 26]
2013-10-16 20:02:25,585 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 20:02:25,585 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 27 Logical Axioms: 27]
2013-10-16 20:02:25,586 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,586 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,592 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:25,592 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,593 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,593 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,593 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,593 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,593 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,593 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,593 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,594 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,594 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,594 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,594 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,594 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,594 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,600 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:25,600 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,600 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,600 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,600 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,600 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,601 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,601 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,601 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,614 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,615 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,615 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,615 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,615 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:25,615 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:25,616 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:25,616 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_16134-proto> is 42
2013-10-16 20:02:25,617 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_16134-proto> is 18
2013-10-16 20:02:25,617 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_59740>)
2013-10-16 20:02:25,617 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,618 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,618 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:25,618 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,618 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,618 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,618 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,618 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,618 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,619 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,619 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,619 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,619 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,619 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,619 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,619 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,619 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,620 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,620 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,620 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,620 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,620 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,620 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,620 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,620 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,621 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,621 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,634 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,634 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,634 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,635 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,635 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,635 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,635 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:25,635 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:25,635 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,635 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,636 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,636 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,636 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,636 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,636 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,636 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,636 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,637 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,637 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,637 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,637 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,637 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,637 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,637 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,638 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,638 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,638 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,638 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,638 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,638 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,638 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,638 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,653 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:25,653 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,653 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,653 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,653 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,654 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,654 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_59740> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:25,654 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,654 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,654 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,655 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,655 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,655 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,655 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,668 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,668 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,668 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,668 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,669 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,669 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,669 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,669 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,669 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,669 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,669 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,670 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,670 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,670 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,670 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,670 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,671 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,687 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:25,687 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,687 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,687 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,687 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_59740> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 20:02:25,687 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_59740> <http://purl.obolibrary.org/obo/CHEBI_59740-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 28 Logical Axioms: 28]
2013-10-16 20:02:25,688 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_59740-proto>
2013-10-16 20:02:25,688 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_59740-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 29 Logical Axioms: 29]
2013-10-16 20:02:25,688 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,688 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,695 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:25,695 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,695 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,695 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,695 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,696 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,696 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,696 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,696 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,696 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,696 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,697 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,697 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,697 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,697 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,703 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 20:02:25,704 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,704 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,704 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,704 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,704 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,704 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,705 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,705 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,718 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,719 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,719 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,719 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,719 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:25,719 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:25,719 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:25,720 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_59740-proto> is 9
2013-10-16 20:02:25,720 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_59740-proto> is 0
2013-10-16 20:02:25,720 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_26619>)
2013-10-16 20:02:25,720 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,720 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,720 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:25,720 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,721 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,721 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,721 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,721 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,721 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,721 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,721 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,722 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,722 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,722 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,722 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,722 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,722 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,722 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,723 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,723 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,723 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,723 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,723 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,723 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,723 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,723 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,724 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,737 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,737 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,738 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,738 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,738 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,738 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,738 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:25,738 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:25,738 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,738 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,739 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,739 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,739 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,739 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,739 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,739 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,739 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,740 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,740 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,740 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,740 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,740 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,740 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,741 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,741 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,741 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,741 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,741 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,741 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,741 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,741 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,742 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,756 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:25,756 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,756 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,757 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,757 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,757 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,757 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_26619> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:25,757 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,757 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,757 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,757 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,758 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,758 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,758 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,769 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,769 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,769 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,769 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,770 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,770 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,770 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,770 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,770 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,770 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,770 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,771 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,771 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,771 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,771 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,771 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,771 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,786 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:25,786 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,787 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,787 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,787 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_26619> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 20:02:25,787 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_26619> <http://purl.obolibrary.org/obo/CHEBI_26619-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 30 Logical Axioms: 30]
2013-10-16 20:02:25,787 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_26619-proto>
2013-10-16 20:02:25,788 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_26619-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 31 Logical Axioms: 31]
2013-10-16 20:02:25,788 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,788 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,795 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:25,795 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,795 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,796 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,796 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,796 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,796 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,797 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,797 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,797 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,797 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,797 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,797 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,797 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,798 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,803 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:25,803 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,803 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,803 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,803 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,803 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,803 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,804 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,804 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,817 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,818 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,818 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,818 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,818 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:25,818 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:25,818 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:25,819 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_26619-proto> is 6
2013-10-16 20:02:25,819 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_26619-proto> is 0
2013-10-16 20:02:25,819 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:25,819 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,819 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,819 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,819 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,820 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,820 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,820 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,820 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,820 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,820 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,820 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,821 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,821 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,821 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,821 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,821 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,821 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,828 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 20:02:25,829 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,829 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,829 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,829 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,829 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,829 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,830 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,830 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,843 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,844 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,844 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,844 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,844 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,844 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,844 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,844 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,845 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,845 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,845 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,845 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,845 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,845 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,845 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,846 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,846 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,846 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,846 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,846 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,846 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,847 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,847 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,847 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,847 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,847 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,847 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,847 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,847 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,848 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,864 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:25,864 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,864 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,864 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,864 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,864 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,865 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,865 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,865 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,865 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,865 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,865 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,872 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:25,881 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,881 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,881 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,881 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,881 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,882 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,882 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,882 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,882 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,882 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,882 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,882 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,883 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,883 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,883 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,883 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,883 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,899 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:25,900 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,900 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,900 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,900 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:25,900 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_25555> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 32 Logical Axioms: 32]
2013-10-16 20:02:25,901 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 20:02:25,901 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 20:02:25,901 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 33 Logical Axioms: 33]
2013-10-16 20:02:25,901 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,901 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,911 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 9 ms
2013-10-16 20:02:25,911 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,911 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,911 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,911 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,911 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,912 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,912 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,912 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,912 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,912 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,912 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,913 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,913 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,913 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,918 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:25,918 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,918 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,919 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,919 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,919 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,919 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,919 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,919 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,933 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,933 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,933 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,934 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,934 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:25,934 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:25,934 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:25,935 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_25555-proto> is 13
2013-10-16 20:02:25,935 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_25555-proto> is 5
2013-10-16 20:02:25,935 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33937>)
2013-10-16 20:02:25,935 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,936 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,936 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>)))
2013-10-16 20:02:25,936 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,936 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,936 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,936 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,937 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,937 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,937 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,937 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,937 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,937 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,937 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,937 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,938 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,938 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,938 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,938 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,938 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,938 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,939 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,939 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,939 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,939 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,939 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,939 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,953 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,953 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,953 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,954 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,954 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,954 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,954 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>)))
2013-10-16 20:02:25,954 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>)))
2013-10-16 20:02:25,954 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,954 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,954 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,955 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,955 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,955 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,955 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,955 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,955 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,956 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,956 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,956 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,956 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,956 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,956 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,956 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,957 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,957 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,957 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,957 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,957 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,957 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,957 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,957 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,971 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:25,971 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,972 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,972 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,972 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:25,972 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:25,972 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25555>)))
2013-10-16 20:02:25,972 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:25,973 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:25,973 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:25,973 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:25,973 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:25,973 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:25,973 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:25,982 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:25,982 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:25,982 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:25,983 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:25,983 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:25,983 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:25,983 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:25,983 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:25,983 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:25,983 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:25,984 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:25,984 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:25,984 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:25,984 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:25,984 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:25,984 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:25,984 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:25,998 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:25,999 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:25,999 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:25,999 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:25,999 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33937> // src=<http://purl.obolibrary.org/obo/CHEBI_25555-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 20:02:25,999 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33937> <http://purl.obolibrary.org/obo/CHEBI_33937-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 35 Logical Axioms: 35]
2013-10-16 20:02:25,999 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33937-proto>
2013-10-16 20:02:26,000 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33937-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 36 Logical Axioms: 36]
2013-10-16 20:02:26,000 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,000 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,007 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:26,008 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,008 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,008 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,008 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,008 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,008 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,009 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,009 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,009 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,009 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,009 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,009 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,009 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,010 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,014 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:26,015 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,015 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,015 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,015 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,015 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,015 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,016 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,016 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,029 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,030 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,030 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,030 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,030 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:26,030 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:26,030 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:26,031 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33937-proto> is 6
2013-10-16 20:02:26,031 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33937-proto> is 0
2013-10-16 20:02:26,031 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252>)
2013-10-16 20:02:26,031 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,031 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,031 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,031 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,031 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,032 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,032 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,032 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,032 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,032 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,032 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,033 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,033 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,033 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,033 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,033 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,033 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,038 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,039 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,039 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,039 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,039 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,039 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,039 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,039 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,039 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,054 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:26,054 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,054 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,055 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,055 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,055 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,055 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,055 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,055 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,056 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,056 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,056 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,056 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,056 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,056 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,056 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,057 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,057 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,057 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,057 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,057 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,057 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,057 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,057 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,058 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,058 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,058 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,058 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,058 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,058 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,072 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,072 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,072 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,072 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,072 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,073 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,073 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,073 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,073 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,073 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,073 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,073 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,078 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:26,087 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,087 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,087 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,087 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,087 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,088 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,088 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,088 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,088 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,088 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,088 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,089 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,089 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,089 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,089 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,089 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,089 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,103 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:26,103 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,103 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,104 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,104 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33252> // src=<http://purl.obolibrary.org/obo/CHEBI_25555-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:26,104 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33252> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 37 Logical Axioms: 37]
2013-10-16 20:02:26,104 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:26,104 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 20:02:26,104 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 38 Logical Axioms: 38]
2013-10-16 20:02:26,105 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,105 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,111 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:26,111 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,111 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,112 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,112 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,112 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,112 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,112 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,112 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,112 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,113 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,113 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,113 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,113 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,113 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,118 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,118 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,119 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,119 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,119 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,119 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,119 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,119 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,119 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,133 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,133 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,133 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,133 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,134 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:26,134 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:26,134 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:26,134 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33252-proto> is 5
2013-10-16 20:02:26,134 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33252-proto> is 1
2013-10-16 20:02:26,134 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33253>)
2013-10-16 20:02:26,134 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,135 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,135 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,135 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,135 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,135 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,135 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,135 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,136 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,136 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,136 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,136 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,136 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,136 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,136 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,137 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,137 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,142 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,142 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,142 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,143 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,143 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,143 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,143 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,143 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,143 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,157 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,157 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,157 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,158 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,158 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,158 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,158 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,158 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,158 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,159 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,159 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,159 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,159 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,159 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,159 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,159 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,159 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,160 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,160 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,160 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,160 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,160 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,160 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,160 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,160 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,161 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,161 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,161 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,161 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,161 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,175 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,175 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,175 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,175 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,175 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,175 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,176 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,176 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,176 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,176 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,176 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,176 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,181 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:26,190 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,190 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,190 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,190 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,190 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,191 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,191 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,191 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,191 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,191 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,191 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,192 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,192 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,192 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,192 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,192 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,192 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,206 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,206 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,206 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,206 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,207 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33253> // src=<http://purl.obolibrary.org/obo/CHEBI_33252-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:26,207 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33253> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 40 Logical Axioms: 40]
2013-10-16 20:02:26,207 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:26,207 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:26,207 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 41 Logical Axioms: 41]
2013-10-16 20:02:26,207 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,207 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,214 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:26,214 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,214 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,214 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,214 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,215 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,215 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,215 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,215 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,215 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,215 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,215 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,216 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,216 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,216 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,221 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:26,221 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,221 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,221 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,221 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,221 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,222 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,222 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,222 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,236 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,236 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,236 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,236 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,236 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:26,237 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:26,237 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:26,237 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33253-proto> is 8
2013-10-16 20:02:26,237 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33253-proto> is 0
2013-10-16 20:02:26,237 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_10545>)
2013-10-16 20:02:26,237 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,238 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,238 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,238 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,238 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,238 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,238 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,238 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,239 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,239 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,239 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,239 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,239 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,239 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,239 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,239 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,240 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,245 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,245 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,246 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,246 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,246 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,246 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,246 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,246 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,246 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,260 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,261 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,261 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,261 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,261 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,261 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,261 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,261 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,262 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,262 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,262 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,262 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,262 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,262 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,262 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,263 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,263 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,263 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,263 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,263 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,263 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,263 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,263 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,264 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,264 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,264 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,264 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,264 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,264 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,264 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,278 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,278 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,278 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,279 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,279 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,279 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,279 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,279 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,279 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,279 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,279 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,280 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,285 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:26,294 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,294 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,295 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,295 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,295 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,295 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,295 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,295 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,295 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,295 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,296 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,296 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,296 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,296 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,296 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,296 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,296 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,311 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:26,311 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,311 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,311 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,312 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_10545> // src=<http://purl.obolibrary.org/obo/CHEBI_25555-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:26,312 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_10545> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 43 Logical Axioms: 43]
2013-10-16 20:02:26,312 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:26,312 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 20:02:26,312 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 44 Logical Axioms: 44]
2013-10-16 20:02:26,312 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,313 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,319 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:26,319 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,319 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,320 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,320 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,320 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,320 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,320 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,320 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,320 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,320 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,321 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,321 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,321 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,321 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,326 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,326 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,326 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,327 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,327 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,327 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,327 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,327 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,327 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,341 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,341 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,341 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,341 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,341 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:26,342 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:26,342 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:26,342 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_10545-proto> is 6
2013-10-16 20:02:26,342 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_10545-proto> is 0
2013-10-16 20:02:26,342 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_29337>)
2013-10-16 20:02:26,342 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,342 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,343 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:26,343 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,343 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,343 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,343 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,343 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,343 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,343 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,344 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,344 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,344 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,344 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,344 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,344 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,344 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,345 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,345 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,345 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,345 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,345 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,345 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,345 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,345 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,346 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,346 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,359 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,360 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,360 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,360 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,360 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,360 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,360 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:26,360 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:26,361 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,361 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,361 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,361 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,361 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,361 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,361 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,361 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,362 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,362 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,362 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,362 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,362 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,362 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,362 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,363 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,363 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,363 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,363 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,363 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,363 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,363 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,363 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,363 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,377 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,377 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,377 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,377 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,378 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,378 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,378 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:26,378 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,378 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,378 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,378 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,378 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,378 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,379 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,387 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,387 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,388 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,388 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,388 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,388 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,388 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,388 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,388 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,388 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,389 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,389 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,389 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,389 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,389 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,389 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,390 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,404 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:26,404 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,404 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,404 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,404 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_29337> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 20:02:26,405 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_29337> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 46 Logical Axioms: 46]
2013-10-16 20:02:26,405 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 20:02:26,405 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 47 Logical Axioms: 47]
2013-10-16 20:02:26,405 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,405 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,412 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:26,412 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,412 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,412 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,413 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,413 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,413 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,413 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,413 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,413 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,413 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,414 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,414 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,414 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,414 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,419 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,419 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,419 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,420 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,420 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,420 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,420 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,420 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,420 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,434 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,434 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,434 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,434 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,434 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:26,434 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:26,435 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:26,435 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_29337-proto> is 39
2013-10-16 20:02:26,435 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_29337-proto> is 13
2013-10-16 20:02:26,436 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_29340>)
2013-10-16 20:02:26,436 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,436 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,436 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 20:02:26,436 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,436 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,437 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,437 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,437 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,437 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,437 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,437 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,438 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,438 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,438 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,438 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,438 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,438 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,438 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,439 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,439 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,439 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,439 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,439 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,439 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,439 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,439 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,440 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,453 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,453 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,454 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,454 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,454 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,454 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,454 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 20:02:26,454 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 20:02:26,454 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,455 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,455 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,455 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,455 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,455 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,455 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,456 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,456 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,456 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,456 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,456 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,456 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,456 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,457 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,457 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,457 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,457 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,457 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,457 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,457 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,458 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,458 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,458 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,472 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,472 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,472 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,472 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,472 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,472 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,472 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29340> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 20:02:26,473 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,473 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,473 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,473 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,473 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,473 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,473 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,482 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,482 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,482 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,483 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,483 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,483 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,483 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,483 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,483 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,483 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,484 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,484 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,484 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,484 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,484 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,484 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,484 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,499 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:26,499 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,499 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,499 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,499 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_29340> // src=<http://purl.obolibrary.org/obo/CHEBI_29337-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 20:02:26,499 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_29340> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 48 Logical Axioms: 48]
2013-10-16 20:02:26,500 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 20:02:26,500 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 49 Logical Axioms: 49]
2013-10-16 20:02:26,500 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,500 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,506 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:26,507 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,507 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,507 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,507 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,507 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,507 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,507 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,508 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,508 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,508 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,508 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,508 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,508 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,508 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,513 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,514 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,514 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,514 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,514 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,514 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,515 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,515 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,515 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,529 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,529 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,529 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,529 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,529 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:26,529 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:26,529 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:26,530 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_29340-proto> is 38
2013-10-16 20:02:26,530 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_29340-proto> is 12
2013-10-16 20:02:26,530 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:26,531 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,531 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,531 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,531 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,531 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,531 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,531 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,532 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,532 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,532 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,532 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,532 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,532 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,532 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,533 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,533 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,533 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,538 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:26,538 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,538 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,538 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,538 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,538 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,538 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,539 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,539 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,552 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,552 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,553 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,553 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,553 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,553 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,553 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,553 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,553 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,554 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,554 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,554 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,554 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,554 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,554 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,554 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,555 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,555 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,555 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,555 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,555 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,555 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,555 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,555 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,556 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,556 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,556 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,556 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,556 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,556 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,570 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,570 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,570 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,570 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,571 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,571 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,571 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,571 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,571 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,571 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,571 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,571 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,577 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:26,585 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,585 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,585 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,586 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,586 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,586 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,586 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,586 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,586 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,586 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,586 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,587 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,587 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,587 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,587 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,587 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,587 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,601 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,601 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,601 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,601 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,602 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_29340-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:26,602 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 20:02:26,602 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 50 Logical Axioms: 50]
2013-10-16 20:02:26,602 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 20:02:26,602 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,602 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,609 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:26,609 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,609 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,610 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,610 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,610 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,610 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,610 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,610 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,611 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,611 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,611 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,611 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,611 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,611 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,616 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,618 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,619 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,621 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 1 ms
2013-10-16 20:02:26,621 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,621 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,621 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,621 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,621 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,635 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,635 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,635 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,636 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,636 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,636 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,636 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,636 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,636 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,637 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,637 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,637 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,637 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,637 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,637 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,637 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,637 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,638 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,638 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,638 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,638 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,638 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,638 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,638 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,639 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,639 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,639 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,639 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,639 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,639 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,653 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,653 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,653 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,653 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,653 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,653 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,654 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,654 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,654 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,654 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,654 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,654 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,659 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:26,667 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,668 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,668 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,668 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,668 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,668 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,669 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,669 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,669 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,669 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,669 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,669 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,669 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,669 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,670 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,670 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,670 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,684 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,684 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,684 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,684 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,684 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_29340-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:26,685 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_24433> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 52 Logical Axioms: 52]
2013-10-16 20:02:26,685 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_24433-proto>
2013-10-16 20:02:26,685 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 20:02:26,685 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 53 Logical Axioms: 53]
2013-10-16 20:02:26,685 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,685 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,692 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:26,692 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,692 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,692 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,692 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,692 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,693 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,693 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,693 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,693 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,693 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,693 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,693 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,693 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,694 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,698 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:26,698 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,699 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,699 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,699 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,699 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,699 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,699 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,700 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,713 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,714 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,714 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,714 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,714 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:26,714 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:26,714 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:26,715 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_24433-proto> is 7
2013-10-16 20:02:26,715 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_24433-proto> is 4
2013-10-16 20:02:26,715 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 20:02:26,715 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,715 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,715 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,715 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,715 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,716 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,716 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,716 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,716 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,716 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,716 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,716 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,717 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,717 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,717 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,717 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,717 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,722 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:26,722 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,722 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,723 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,723 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,723 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,723 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,723 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,723 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,737 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,737 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,737 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,737 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,738 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,738 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,738 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,738 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,738 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,738 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,738 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,739 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,739 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,739 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,739 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,739 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,739 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,739 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,740 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,740 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,740 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,740 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,740 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,740 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,740 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,740 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,741 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,741 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,741 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,741 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,755 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,755 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,755 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,755 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,755 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,755 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,755 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,756 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,756 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,756 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,756 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,756 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,761 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:26,770 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,770 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,770 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,770 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,770 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,771 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,771 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,771 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,771 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,771 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,771 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,771 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,771 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,772 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,772 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,772 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,772 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,786 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:26,786 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,786 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,786 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,787 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_24433-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:26,787 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33250> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 55 Logical Axioms: 55]
2013-10-16 20:02:26,787 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33250-proto>
2013-10-16 20:02:26,787 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>
2013-10-16 20:02:26,787 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 56 Logical Axioms: 56]
2013-10-16 20:02:26,787 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,787 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,794 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:26,794 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,794 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,794 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,794 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,795 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,795 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,795 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,795 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,795 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,795 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,795 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,796 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,796 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,796 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,801 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,801 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,802 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,802 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,802 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,802 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,802 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,803 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,803 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,816 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,817 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,817 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,817 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,817 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:26,817 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:26,817 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:26,818 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33250-proto> is 6
2013-10-16 20:02:26,818 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33250-proto> is 3
2013-10-16 20:02:26,818 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252>)
2013-10-16 20:02:26,818 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,818 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,818 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,818 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,818 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,819 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,819 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,819 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,819 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,819 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,819 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,820 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,820 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,820 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,820 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,820 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,820 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,825 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,825 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,826 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,826 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,826 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,826 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,826 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,826 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,826 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,840 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,840 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,840 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,841 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,841 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,841 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,841 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,841 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,841 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,842 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,842 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,842 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,842 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,842 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,842 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,842 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,842 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,843 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,843 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,843 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,843 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,843 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,843 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,843 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,844 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,844 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,844 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,844 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,844 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,844 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,858 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:26,859 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,859 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,859 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,859 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,859 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,859 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,859 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,859 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,860 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,860 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,860 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,865 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:26,873 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,873 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,874 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,874 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,874 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,888 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 13 ms
2013-10-16 20:02:26,888 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,888 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,888 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,888 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,889 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,889 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,889 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,889 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,889 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,889 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,890 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,904 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:26,904 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,904 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,905 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,905 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33252> // src=<http://purl.obolibrary.org/obo/CHEBI_33250-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:26,905 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>
2013-10-16 20:02:26,905 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 58 Logical Axioms: 58]
2013-10-16 20:02:26,905 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_10545>)
2013-10-16 20:02:26,905 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,906 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,912 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:26,912 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,912 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,913 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,913 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,913 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,913 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,913 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,913 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,914 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,914 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,914 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,914 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,914 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,914 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,919 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:26,920 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,920 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,920 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,920 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,920 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,920 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,920 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,921 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,934 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:26,934 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,935 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,935 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,935 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,935 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,935 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,935 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,935 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,936 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,936 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,936 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,936 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:26,936 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,936 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,937 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,937 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,937 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,937 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:26,937 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,937 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,937 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,937 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,938 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,938 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,938 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,938 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,938 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,938 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,938 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,953 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:26,953 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,953 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,953 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,953 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,953 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,954 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:26,954 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,954 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:26,954 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:26,954 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:26,954 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:26,959 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:26,968 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:26,968 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:26,968 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:26,968 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:26,968 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:26,974 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 5 ms
2013-10-16 20:02:26,974 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:26,974 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:26,974 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:26,974 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:26,974 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:26,975 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:26,975 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:26,975 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:26,975 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:26,975 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:26,975 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:26,989 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:26,990 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:26,990 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:26,990 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:26,990 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_10545> // src=<http://purl.obolibrary.org/obo/CHEBI_33250-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:26,990 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>
2013-10-16 20:02:26,991 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 60 Logical Axioms: 60]
2013-10-16 20:02:26,991 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 20:02:26,991 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:26,991 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:26,999 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:26,999 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:26,999 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,000 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,000 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,000 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,000 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,000 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,000 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,001 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,001 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,001 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,001 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,001 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,001 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,007 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:27,007 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,007 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,008 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,008 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,008 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,008 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,008 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,008 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,022 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,022 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,023 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,023 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,023 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,023 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,023 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,023 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,023 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,024 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,024 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,024 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,024 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,024 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,024 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,025 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,025 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,025 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,025 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,025 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,025 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,025 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,025 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,026 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,026 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,026 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,026 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,026 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,026 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,026 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,040 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,040 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,040 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,040 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,040 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,041 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,041 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,041 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,041 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,041 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,041 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,041 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,047 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:27,055 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,056 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,056 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,056 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,056 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,056 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,056 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,057 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,057 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,057 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,057 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,057 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,057 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,057 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,058 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,058 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,058 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,072 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:27,072 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,073 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,073 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,073 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_29340-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:27,073 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_49637> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 62 Logical Axioms: 62]
2013-10-16 20:02:27,073 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_49637-proto>
2013-10-16 20:02:27,073 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 20:02:27,074 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 63 Logical Axioms: 63]
2013-10-16 20:02:27,074 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,074 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,080 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,080 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,081 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,081 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,081 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,081 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,081 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,081 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,081 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,082 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,082 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,082 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,082 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,082 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,082 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,087 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:27,088 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,088 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,088 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,088 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,088 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,088 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,088 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,089 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,103 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:27,103 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,103 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,103 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,104 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:27,104 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:27,104 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:27,104 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_49637-proto> is 18
2013-10-16 20:02:27,104 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_49637-proto> is 5
2013-10-16 20:02:27,105 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33937>)
2013-10-16 20:02:27,105 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,105 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,105 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>)))
2013-10-16 20:02:27,105 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,105 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,105 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,105 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,106 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,106 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,106 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,106 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,106 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,107 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,107 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,107 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,107 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,107 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,107 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,107 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,107 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,108 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,108 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,108 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,108 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,108 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,108 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,108 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,122 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,122 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,122 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,123 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,123 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,123 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,123 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>)))
2013-10-16 20:02:27,123 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>)))
2013-10-16 20:02:27,123 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,123 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,123 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,124 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,124 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,124 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,124 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,124 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,124 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,125 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,125 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,125 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,125 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,125 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,125 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,125 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,126 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,126 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,126 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,126 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,126 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,126 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,126 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,127 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,142 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:27,142 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,142 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,142 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,143 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,143 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,143 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_49637>)))
2013-10-16 20:02:27,143 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,143 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,143 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,143 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,144 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,144 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,144 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,152 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,152 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,153 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,153 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,153 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,153 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,153 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,153 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,153 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,154 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,154 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,154 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,154 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,154 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,154 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,154 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,154 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,168 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,168 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,169 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,169 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,169 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33937> // src=<http://purl.obolibrary.org/obo/CHEBI_49637-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 20:02:27,169 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33937-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 65 Logical Axioms: 65]
2013-10-16 20:02:27,169 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252>)
2013-10-16 20:02:27,169 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,170 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,176 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,176 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,176 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,177 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,177 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,177 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,177 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,177 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,177 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,177 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,177 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,178 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,178 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,178 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,178 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,183 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:27,183 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,183 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,183 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,183 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,183 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,184 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,184 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,184 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,198 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,198 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,198 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,198 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,198 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,198 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,199 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,199 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,199 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,199 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,199 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,199 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,199 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,200 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,200 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,200 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,200 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,200 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,200 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,200 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,200 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,200 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,201 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,201 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,201 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,201 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,201 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,201 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,201 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,201 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,215 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,215 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,215 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,216 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,216 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,216 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,216 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,216 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,216 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,216 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,216 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,216 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,222 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:27,230 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,230 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,230 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,230 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,230 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,231 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,231 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,231 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,231 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,231 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,231 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,231 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,231 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,231 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,232 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,232 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,232 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,246 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,246 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,246 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,246 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,246 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33252> // src=<http://purl.obolibrary.org/obo/CHEBI_49637-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:27,247 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>
2013-10-16 20:02:27,247 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 66 Logical Axioms: 66]
2013-10-16 20:02:27,247 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_10545>)
2013-10-16 20:02:27,247 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,247 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,254 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,254 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,254 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,254 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,254 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,254 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,254 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,255 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,255 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,255 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,255 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,255 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,255 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,255 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,255 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,260 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:27,260 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,261 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,261 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,261 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,261 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,261 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,261 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,261 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,275 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,275 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,275 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,276 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,276 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,276 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,276 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,276 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,276 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,276 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,277 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,277 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,277 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,277 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,277 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,277 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,277 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,277 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,278 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,278 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,278 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,278 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,278 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,278 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,278 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,278 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,279 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,279 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,279 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,279 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,293 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,293 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,293 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,293 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,293 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,293 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,294 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,294 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,294 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,294 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,294 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,294 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,299 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:27,308 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,308 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,308 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,308 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,309 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,309 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,309 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,309 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,309 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,309 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,309 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,309 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,310 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,310 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,310 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,310 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,310 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,324 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,324 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,324 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,324 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,325 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_10545> // src=<http://purl.obolibrary.org/obo/CHEBI_49637-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:27,325 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>
2013-10-16 20:02:27,325 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 68 Logical Axioms: 68]
2013-10-16 20:02:27,325 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_29337>)
2013-10-16 20:02:27,325 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,325 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,332 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>)))
2013-10-16 20:02:27,332 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,332 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,333 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,333 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,333 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,333 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,333 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,333 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,333 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,334 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,334 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,334 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,334 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,334 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,334 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,334 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,334 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,335 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,335 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,335 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,335 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,335 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,335 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,335 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,351 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:27,351 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,351 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,352 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,352 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,352 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,352 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>)))
2013-10-16 20:02:27,352 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>)))
2013-10-16 20:02:27,352 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,352 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,352 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,353 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,353 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,353 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,353 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,353 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,353 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,353 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,353 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,354 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,354 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,354 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,354 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,354 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,354 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,354 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,354 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,354 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,355 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,355 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,355 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,355 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,369 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,369 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,369 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,369 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,369 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,369 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,369 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_29337> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29340>)))
2013-10-16 20:02:27,370 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,370 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,370 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,370 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,370 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,370 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,370 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,378 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,379 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,379 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,379 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,379 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,379 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,379 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,380 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,380 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,380 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,380 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,380 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,380 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,380 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,380 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,380 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,381 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,394 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,394 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,395 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,395 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,395 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_29337> // src=<http://purl.obolibrary.org/obo/CHEBI_29340-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 20:02:27,395 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 70 Logical Axioms: 70]
2013-10-16 20:02:27,395 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:27,395 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,396 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,432 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 36 ms
2013-10-16 20:02:27,432 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,432 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,432 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,432 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,433 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,433 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,433 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,433 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,433 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,433 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,433 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,434 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,434 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,434 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,438 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:27,438 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,438 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,439 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,439 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,439 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,439 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,439 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,439 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,453 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:27,454 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,454 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,454 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,454 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,454 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,455 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,455 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,455 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,455 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,455 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,455 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,455 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,455 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,455 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,456 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,456 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,456 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,456 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,456 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,456 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,456 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,457 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,457 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,457 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,457 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,457 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,457 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,457 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,457 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,471 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,471 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,471 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,471 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,471 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,472 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,472 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,472 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,472 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,472 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,472 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,472 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,477 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:27,485 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,485 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,486 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,486 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,486 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,486 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,486 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,486 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,486 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,487 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,487 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,487 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,487 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,487 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,487 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,487 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,487 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,501 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,501 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,502 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,502 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,502 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_29337-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:27,502 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 20:02:27,502 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 71 Logical Axioms: 71]
2013-10-16 20:02:27,503 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 20:02:27,503 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,503 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,509 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 20:02:27,509 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,509 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,509 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,510 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,510 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,510 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,510 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,510 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,510 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,511 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,511 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,511 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,511 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,511 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,511 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,511 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,511 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,511 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,512 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,512 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,512 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,512 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,512 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,512 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,526 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,526 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,526 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,526 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,526 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,527 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,527 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 20:02:27,527 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 20:02:27,527 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,527 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,527 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,527 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,527 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,527 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,528 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,528 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,528 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,528 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,528 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,528 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,528 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,528 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,529 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,529 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,529 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,529 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,529 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,529 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,529 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,529 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,529 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,530 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,544 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:27,544 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,544 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,544 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,544 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,544 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,545 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_29337>)))
2013-10-16 20:02:27,545 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,545 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,545 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,545 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,545 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,545 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,545 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,553 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,554 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,554 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,554 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,554 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,554 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,554 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,555 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,555 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,555 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,555 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,555 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,555 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,555 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,555 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,555 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,556 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,570 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:27,570 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,570 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,570 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,570 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_29337-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 20:02:27,571 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 73 Logical Axioms: 73]
2013-10-16 20:02:27,571 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 20:02:27,571 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,571 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,577 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,577 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,577 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,578 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,578 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,578 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,578 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,578 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,578 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,578 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,579 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,579 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,579 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,579 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,579 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,584 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:27,584 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,584 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,584 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,584 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,584 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,584 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,584 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,585 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,598 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,599 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,599 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,599 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,599 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,599 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,600 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,600 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,600 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,600 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,600 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,600 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,600 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,600 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,601 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,601 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,601 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,601 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,601 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,601 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,601 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,601 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,601 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,602 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,602 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,602 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,602 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,602 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,602 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,602 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,616 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,616 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,616 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,616 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,617 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,617 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,617 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,617 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,617 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,617 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,617 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,617 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,622 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:27,630 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,630 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,630 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,630 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,630 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,631 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,631 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,631 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,631 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,631 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,631 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,631 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,631 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,631 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,632 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,632 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,632 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,646 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,646 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,646 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,646 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,647 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_29337-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:27,647 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 20:02:27,647 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 74 Logical Axioms: 74]
2013-10-16 20:02:27,647 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 20:02:27,647 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,647 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,654 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,654 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,654 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,654 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,654 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,654 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,654 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,655 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,655 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,655 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,655 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,655 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,655 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,655 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,655 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,660 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:27,660 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,661 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,661 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,661 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,661 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,661 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,661 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,661 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,675 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,675 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,675 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,676 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,676 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,676 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,676 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,676 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,676 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,677 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,677 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,677 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,677 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,677 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,677 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,677 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,677 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,677 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,678 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,678 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,678 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,678 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,678 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,678 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,678 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,678 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,679 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,679 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,679 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,679 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,693 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,693 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,693 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,693 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,693 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,693 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,694 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,694 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,694 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,694 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,694 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,694 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,700 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:27,709 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,709 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,709 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,709 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,709 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,710 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,710 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,710 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,710 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,710 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,710 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,710 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,710 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,711 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,711 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,711 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,711 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,725 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:27,726 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,726 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,726 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,726 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_29337-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:27,726 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 20:02:27,727 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 76 Logical Axioms: 76]
2013-10-16 20:02:27,727 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_28938>)
2013-10-16 20:02:27,727 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,727 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,733 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:27,733 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,733 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,734 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,734 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,734 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,734 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,734 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,734 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,734 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,734 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,735 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,735 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,735 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,735 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,735 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,735 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,735 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,735 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,735 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,736 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,736 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,736 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,736 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,736 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,749 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,750 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,750 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,750 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,750 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,750 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,750 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:27,750 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:27,751 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,751 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,751 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,751 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,751 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,751 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,751 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,751 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,751 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,752 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,752 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,752 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,752 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,752 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,752 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,752 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,752 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,753 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,753 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,753 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,753 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,753 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,753 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,753 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,767 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,767 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,767 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,768 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,768 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,768 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,768 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28938> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:27,768 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,768 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,768 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,769 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,769 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,769 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,769 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,777 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,777 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,777 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,777 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,778 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,778 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,778 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,778 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,778 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,778 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,778 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,778 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,779 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,779 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,779 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,779 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,779 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,793 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,793 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,793 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,793 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,793 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_28938> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 20:02:27,794 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_28938> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 78 Logical Axioms: 78]
2013-10-16 20:02:27,794 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 20:02:27,794 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 79 Logical Axioms: 79]
2013-10-16 20:02:27,794 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,794 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,801 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,801 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,801 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,801 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,801 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,801 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,802 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,802 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,802 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,802 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,802 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,802 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,802 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,802 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,803 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,812 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 9 ms
2013-10-16 20:02:27,812 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,813 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,813 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,813 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,813 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,814 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,814 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,814 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,828 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,828 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,828 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,828 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,828 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:27,828 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:27,829 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:27,829 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_28938-proto> is 44
2013-10-16 20:02:27,829 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_28938-proto> is 12
2013-10-16 20:02:27,830 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 20:02:27,830 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,830 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,830 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>)))
2013-10-16 20:02:27,830 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,830 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,830 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,831 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,831 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,831 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,831 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,831 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,831 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,831 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,831 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,832 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,832 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,832 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,832 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,832 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,832 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,832 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,832 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,832 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,833 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,833 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,833 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,833 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,846 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,847 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,847 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,847 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,847 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,847 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,847 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>)))
2013-10-16 20:02:27,847 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>)))
2013-10-16 20:02:27,848 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,848 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,848 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,848 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,848 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,848 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,848 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,848 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,849 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,849 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,849 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,849 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,849 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,849 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,849 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,849 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,849 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,850 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,850 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,850 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,850 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,850 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,850 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,850 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,864 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,864 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,864 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,865 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,865 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,865 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,865 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28938>)))
2013-10-16 20:02:27,865 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,865 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,865 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,865 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,865 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,866 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,866 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,874 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,874 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,874 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,874 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,874 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,875 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,875 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,875 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,875 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,875 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,875 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,875 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,875 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,875 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,876 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,876 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,876 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,890 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,890 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,890 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,890 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,890 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_28938-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 20:02:27,890 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 80 Logical Axioms: 80]
2013-10-16 20:02:27,891 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:27,891 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,891 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,897 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,897 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,897 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,898 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,898 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,898 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,898 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,898 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,898 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,898 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,899 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,899 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,899 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,899 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,899 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,903 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 3 ms
2013-10-16 20:02:27,903 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,903 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,903 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,903 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,903 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,904 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,904 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,904 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,918 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,918 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,918 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,918 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,918 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,918 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,919 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,919 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,919 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,919 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,919 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,919 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,919 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,920 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,920 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,920 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,920 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,920 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,920 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,920 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,920 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,921 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,921 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,921 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,921 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,921 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,921 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,921 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,921 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,921 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,935 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,936 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,936 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,936 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,936 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,936 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,936 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,936 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,936 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,937 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,937 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,937 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,941 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:27,949 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,949 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,949 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,950 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,950 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,950 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,950 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,950 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,950 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,950 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,950 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,951 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,951 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,951 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,951 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,951 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,951 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,965 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:27,965 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,965 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,966 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,966 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_28938-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:27,966 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 20:02:27,966 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 81 Logical Axioms: 81]
2013-10-16 20:02:27,966 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 20:02:27,966 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,967 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,973 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:27,973 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,973 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,973 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,974 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,974 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,974 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,974 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,974 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,974 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,974 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,974 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,975 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,975 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,975 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,979 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:27,980 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,980 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,980 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,980 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,980 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,980 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,980 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,981 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:27,995 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:27,995 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:27,995 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:27,995 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:27,995 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:27,995 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:27,996 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:27,996 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:27,996 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:27,996 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:27,996 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:27,996 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:27,996 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:27,997 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:27,997 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:27,997 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:27,997 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:27,997 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:27,997 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:27,997 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:27,997 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:27,998 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:27,998 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:27,998 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:27,998 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:27,998 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:27,998 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:27,998 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:27,998 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:27,998 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,012 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,012 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,012 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,013 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,013 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,013 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,013 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,013 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,013 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,013 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,014 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,014 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,021 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:28,032 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,032 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,032 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,032 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,032 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,033 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,033 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,033 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,033 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,033 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,033 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,033 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,033 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,033 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,034 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,034 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,034 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,048 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:28,048 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,049 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,049 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,049 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_28938-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:28,049 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 20:02:28,049 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 83 Logical Axioms: 83]
2013-10-16 20:02:28,049 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 20:02:28,050 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,050 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,056 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,056 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,056 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,056 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,057 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,057 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,057 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,057 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,057 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,057 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,057 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,057 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,058 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,058 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,058 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,062 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 3 ms
2013-10-16 20:02:28,062 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,062 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,062 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,062 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,062 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,062 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,063 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,063 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,077 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,077 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,077 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,077 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,077 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,077 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,078 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,078 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,078 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,078 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,078 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,078 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,078 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,078 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,079 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,079 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,079 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,079 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,079 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,079 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,079 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,079 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,079 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,080 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,080 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,080 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,080 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,080 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,080 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,080 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,094 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,094 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,094 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,094 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,094 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,095 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,095 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,095 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,095 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,095 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,095 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,095 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,099 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 3 ms
2013-10-16 20:02:28,108 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,108 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,108 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,108 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,108 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,109 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,109 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,109 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,109 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,109 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,109 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,109 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,109 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,109 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,110 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,110 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,110 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,123 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,124 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,124 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,124 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,124 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_28938-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:28,124 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 20:02:28,125 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 85 Logical Axioms: 85]
2013-10-16 20:02:28,125 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 20:02:28,125 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,125 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,131 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,131 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,132 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,132 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,132 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,132 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,132 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,132 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,132 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,133 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,133 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,133 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,133 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,133 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,133 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,138 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:28,138 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,138 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,138 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,138 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,138 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,139 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,139 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,139 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,152 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,153 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,153 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,153 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,153 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,153 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,153 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,153 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,154 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,154 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,154 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,154 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,154 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,154 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,154 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,155 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,155 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,155 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,155 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,155 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,155 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,155 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,155 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,155 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,156 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,156 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,156 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,156 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,156 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,156 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,170 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,170 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,170 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,170 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,170 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,170 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,171 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,171 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,171 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,171 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,171 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,171 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,177 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:28,185 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,186 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,186 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,186 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,186 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,186 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,186 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,186 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,186 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,187 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,187 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,187 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,187 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,187 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,187 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,187 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,188 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,201 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,202 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,202 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,202 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,202 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:28,202 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 20:02:28,202 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 87 Logical Axioms: 87]
2013-10-16 20:02:28,203 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_50910>)
2013-10-16 20:02:28,203 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,203 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,209 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:28,209 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,209 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,210 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,210 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,210 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,210 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,210 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,210 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,210 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,210 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,211 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,211 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,211 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,211 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,211 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,211 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,211 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,211 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,212 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,212 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,212 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,212 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,212 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,212 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,226 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:28,226 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,226 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,227 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,227 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,227 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,227 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:28,227 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:28,227 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,227 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,227 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,228 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,228 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,228 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,228 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,228 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,228 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,228 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,228 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,229 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,229 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,229 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,229 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,229 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,229 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,229 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,230 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,230 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,230 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,230 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,230 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,230 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,244 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,244 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,244 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,244 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,244 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,245 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,245 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50910> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_16134>)))
2013-10-16 20:02:28,245 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,245 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,245 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,245 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,245 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,245 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,245 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,254 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,254 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,254 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,254 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,255 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,255 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,255 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,255 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,255 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,255 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,255 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,255 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,256 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,256 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,256 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,256 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,256 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,270 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,270 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,270 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,270 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,270 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_50910> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 20:02:28,270 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_50910> <http://purl.obolibrary.org/obo/CHEBI_50910-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 89 Logical Axioms: 89]
2013-10-16 20:02:28,271 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_50910-proto>
2013-10-16 20:02:28,271 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_50910-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 90 Logical Axioms: 90]
2013-10-16 20:02:28,271 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,271 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,277 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,278 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,278 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,278 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,278 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,278 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,278 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,278 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,279 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,279 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,279 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,279 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,279 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,279 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,279 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,286 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 20:02:28,286 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,286 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,286 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,286 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,286 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,287 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,287 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,287 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,301 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,301 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,301 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,301 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,301 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:28,301 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:28,302 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:28,302 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_50910-proto> is 6
2013-10-16 20:02:28,302 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_50910-proto> is 0
2013-10-16 20:02:28,302 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 20:02:28,302 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,302 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,302 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,303 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,303 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,303 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,303 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,303 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,303 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,303 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,303 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,304 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,304 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,304 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,304 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,304 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,304 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,312 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 20:02:28,312 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,312 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,312 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,312 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,312 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,313 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,313 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,313 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,327 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:28,327 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,327 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,328 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,328 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,328 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,328 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,328 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,328 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,328 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,329 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,329 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,329 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,329 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,329 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,329 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,329 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,329 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,330 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,330 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,330 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,330 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,330 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,330 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,330 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,330 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,331 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,331 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,331 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,331 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,345 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,345 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,345 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,345 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,345 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,345 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,345 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,345 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,346 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,346 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,346 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,346 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,351 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:28,360 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,360 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,360 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,360 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,360 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,361 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,361 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,361 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,361 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,361 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,361 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,361 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,361 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,361 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,362 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,362 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,362 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,377 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:28,377 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,377 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,377 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,377 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_16134-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:28,378 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 20:02:28,378 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 91 Logical Axioms: 91]
2013-10-16 20:02:28,378 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 20:02:28,378 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,378 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,385 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,385 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,385 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,385 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,386 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,386 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,386 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,386 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,386 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,386 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,386 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,386 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,387 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,387 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,387 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,392 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:28,392 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,393 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,393 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,393 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,393 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,393 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,393 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,393 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,407 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,407 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,407 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,407 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,407 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,407 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,408 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,408 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,408 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,408 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,408 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,408 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,408 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,409 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,409 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,409 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,409 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,409 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,409 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,409 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,409 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,410 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,410 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,410 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,410 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,410 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,410 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,410 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,410 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,411 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,424 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,424 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,424 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,425 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,425 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,425 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,425 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,425 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,425 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,426 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,426 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,426 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,433 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:28,441 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,441 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,441 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,441 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,441 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,442 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,442 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,442 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,442 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,442 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,442 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,442 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,442 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,442 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,443 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,443 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,443 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,456 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,457 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,457 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,457 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,457 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:28,457 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_25805> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 93 Logical Axioms: 93]
2013-10-16 20:02:28,457 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 20:02:28,458 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 20:02:28,458 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 94 Logical Axioms: 94]
2013-10-16 20:02:28,458 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,458 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,464 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,465 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,465 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,465 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,465 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,465 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,465 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,465 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,465 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,466 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,466 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,466 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,466 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,466 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,466 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,470 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:28,471 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,471 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,471 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,471 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,471 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,471 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,471 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,471 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,485 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,485 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,485 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,486 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,486 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:28,486 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:28,486 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:28,486 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_25805-proto> is 13
2013-10-16 20:02:28,486 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_25805-proto> is 5
2013-10-16 20:02:28,486 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33937>)
2013-10-16 20:02:28,487 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,487 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,487 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>)))
2013-10-16 20:02:28,487 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,487 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,487 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,487 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,487 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,487 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,488 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,488 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,488 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,488 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,488 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,488 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,488 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,488 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,488 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,489 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,489 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,489 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,489 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,489 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,489 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,489 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,489 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,489 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,503 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,503 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,503 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,504 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,504 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,504 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,504 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>)))
2013-10-16 20:02:28,504 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>)))
2013-10-16 20:02:28,504 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,504 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,504 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,505 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,505 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,505 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,505 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,505 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,505 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,505 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,505 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,505 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,506 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,506 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,506 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,506 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,506 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,506 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,506 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,506 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,506 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,506 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,507 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,507 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,520 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,521 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,521 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,521 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,521 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,521 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,521 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_25805>)))
2013-10-16 20:02:28,521 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,521 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,522 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,522 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,522 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,522 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,522 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,530 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,530 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,531 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,531 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,531 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,531 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,531 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,531 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,531 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,531 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,531 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,532 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,532 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,532 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,532 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,532 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,532 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,546 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,546 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,546 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,547 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,547 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33937> // src=<http://purl.obolibrary.org/obo/CHEBI_25805-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 20:02:28,547 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33937-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 96 Logical Axioms: 96]
2013-10-16 20:02:28,547 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252>)
2013-10-16 20:02:28,547 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,547 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,554 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,554 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,554 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,554 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,554 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,554 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,555 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,555 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,555 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,555 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,555 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,555 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,555 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,555 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,555 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,560 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:28,560 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,560 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,560 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,560 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,560 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,560 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,560 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,561 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,575 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:28,575 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,575 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,575 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,576 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,576 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,576 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,576 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,576 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,576 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,576 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,576 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,577 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,577 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,577 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,577 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,577 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,577 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,577 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,577 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,577 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,578 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,578 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,578 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,578 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,578 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,578 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,578 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,578 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,578 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,592 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,592 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,592 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,593 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,593 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,593 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,593 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,593 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,593 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,593 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,593 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,594 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,598 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:28,607 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,607 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,607 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,607 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,607 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,608 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,608 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,608 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,608 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,608 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,608 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,608 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,608 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,608 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,609 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,609 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,609 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,623 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:28,623 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,623 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,623 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,624 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33252> // src=<http://purl.obolibrary.org/obo/CHEBI_25805-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:28,624 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 20:02:28,624 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 97 Logical Axioms: 97]
2013-10-16 20:02:28,624 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_10545>)
2013-10-16 20:02:28,624 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,624 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,631 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,631 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,631 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,631 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,631 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,631 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,632 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,632 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,632 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,632 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,632 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,632 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,632 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,632 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,632 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,637 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:28,637 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,638 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,638 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,638 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,638 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,638 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,638 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,638 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,652 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,652 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,652 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,652 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,653 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,653 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,653 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,653 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,653 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,653 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,653 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,653 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,654 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,654 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,654 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,654 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,654 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,654 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,654 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,654 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,654 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,655 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,655 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,655 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,655 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,655 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,655 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,655 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,655 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,655 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,669 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,669 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,670 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,670 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,670 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,670 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,670 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,670 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,670 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,670 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,671 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,671 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,676 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:28,684 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,684 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,685 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,685 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,685 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,685 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,685 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,685 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,685 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,685 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,685 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,686 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,686 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,686 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,686 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,686 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,686 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,700 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,700 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,700 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,700 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,701 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_10545> // src=<http://purl.obolibrary.org/obo/CHEBI_25805-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:28,701 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 20:02:28,701 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 99 Logical Axioms: 99]
2013-10-16 20:02:28,701 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33708>)
2013-10-16 20:02:28,701 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,701 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,708 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,708 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,708 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,708 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,708 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,708 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,709 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,709 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,709 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,709 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,709 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,709 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,709 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,709 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,709 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,713 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 3 ms
2013-10-16 20:02:28,713 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,713 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,714 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,714 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,714 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,714 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,714 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,714 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,728 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,728 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,728 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,729 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,729 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,729 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,729 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,729 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,729 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,729 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,730 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,730 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,730 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,730 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,730 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,730 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,730 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,730 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,730 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,731 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,731 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,731 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,731 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,731 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,731 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,731 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,731 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,731 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,732 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,732 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,746 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:28,747 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,747 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,747 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,747 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,747 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,747 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,747 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,747 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,748 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,748 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,748 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,752 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:28,760 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,761 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,761 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,761 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,761 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,762 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,762 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,762 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,762 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,762 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,762 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,762 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,762 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,762 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,763 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,763 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,763 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,778 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:28,778 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,778 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,778 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,778 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33708> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:28,779 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33708> <http://purl.obolibrary.org/obo/CHEBI_33708-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 101 Logical Axioms: 101]
2013-10-16 20:02:28,779 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33708-proto>
2013-10-16 20:02:28,779 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33708-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 20:02:28,779 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33708-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_33708-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 102 Logical Axioms: 102]
2013-10-16 20:02:28,779 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,779 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,787 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:28,787 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,787 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,788 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,788 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,788 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,788 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,788 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,788 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,788 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,788 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,788 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,789 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,789 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,789 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,794 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:28,794 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,794 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,794 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,794 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,794 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,795 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,795 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,795 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,809 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,809 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,809 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,809 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,809 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:28,809 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:28,810 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:28,810 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33708-proto> is 12
2013-10-16 20:02:28,810 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33708-proto> is 7
2013-10-16 20:02:28,810 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33709>)
2013-10-16 20:02:28,810 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,811 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,811 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>)))
2013-10-16 20:02:28,811 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,811 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,811 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,811 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,811 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,811 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,811 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,812 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,812 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,812 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,812 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,812 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,812 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,812 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,812 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,812 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,813 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,813 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,813 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,813 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,813 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,813 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,813 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,813 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,827 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,827 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,827 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,828 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,828 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,828 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,828 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>)))
2013-10-16 20:02:28,828 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>)))
2013-10-16 20:02:28,828 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,828 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,828 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,829 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,829 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,829 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,829 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,829 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,829 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,829 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,829 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,830 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,830 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,830 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,830 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,830 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,830 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,830 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,830 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,830 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,830 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,831 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,831 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,831 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,844 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,845 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,845 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,845 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,845 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,845 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,845 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33708>)))
2013-10-16 20:02:28,845 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,845 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,846 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,846 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,846 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,846 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,846 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,854 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,855 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,855 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,855 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,855 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,855 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,855 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,856 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,856 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,856 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,856 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,856 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,856 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,856 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,856 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,857 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,857 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,870 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,871 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,871 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,871 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,871 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33709> // src=<http://purl.obolibrary.org/obo/CHEBI_33708-proto> via <http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>
2013-10-16 20:02:28,871 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33709> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 104 Logical Axioms: 104]
2013-10-16 20:02:28,871 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 20:02:28,871 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33708-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 105 Logical Axioms: 105]
2013-10-16 20:02:28,871 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,872 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,878 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,878 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,879 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,879 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,879 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,879 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,879 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,879 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,879 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,879 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,880 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,880 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,880 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,880 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,880 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,884 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 3 ms
2013-10-16 20:02:28,884 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,884 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,885 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,885 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,885 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,885 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,885 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,885 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,899 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,899 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,899 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,899 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,899 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:28,899 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:28,900 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:28,901 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33709-proto> is 59
2013-10-16 20:02:28,901 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33709-proto> is 24
2013-10-16 20:02:28,901 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_43176>)
2013-10-16 20:02:28,902 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,902 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,902 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,902 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,902 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,902 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,902 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,902 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,903 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,903 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,903 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,903 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,903 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,903 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,903 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,903 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,903 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,909 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:28,909 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,909 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,910 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,910 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,910 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,910 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,910 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,910 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,924 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,924 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,924 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,924 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,924 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,925 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,925 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,925 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,925 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,925 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,925 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,925 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,925 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,926 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,926 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,926 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,926 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,926 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,926 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,926 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,926 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,927 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,927 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,927 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,927 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,927 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,927 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,927 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,927 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,927 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,941 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:28,941 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,941 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,941 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,942 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,942 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,942 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:28,942 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,942 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,942 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,942 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,942 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,947 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:28,956 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,956 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,956 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,956 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,956 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,957 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,957 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,957 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,957 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:28,957 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,957 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,957 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,957 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,957 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,957 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,958 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,958 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:28,972 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:28,972 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:28,972 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:28,972 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:28,972 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_43176> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:28,972 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_43176> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 106 Logical Axioms: 106]
2013-10-16 20:02:28,973 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_43176-proto>
2013-10-16 20:02:28,973 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 20:02:28,973 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 107 Logical Axioms: 107]
2013-10-16 20:02:28,973 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:28,973 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:28,980 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:28,980 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:28,980 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:28,980 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:28,980 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:28,980 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:28,980 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:28,981 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:28,981 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:28,981 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:28,981 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:28,981 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:28,981 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:28,981 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:28,981 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:28,986 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:28,986 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:28,986 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:28,986 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:28,986 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:28,987 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:28,987 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:28,987 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:28,987 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,001 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,001 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,001 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,001 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,001 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:29,001 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:29,002 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:29,002 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_43176-proto> is 9
2013-10-16 20:02:29,002 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_43176-proto> is 4
2013-10-16 20:02:29,002 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 20:02:29,002 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,002 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,003 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,003 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,003 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,003 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,003 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,003 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,003 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,003 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,003 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,004 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,004 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,004 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,004 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,004 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,004 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,009 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:29,009 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,009 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,009 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,009 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,009 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,010 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,010 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,010 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,023 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,024 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,024 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,024 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,024 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,024 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,024 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,025 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,025 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,025 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,025 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,025 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,025 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,025 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,025 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,026 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,026 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,026 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,026 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,026 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,026 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,026 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,026 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,026 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,027 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,027 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,027 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,027 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,027 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,027 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,041 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,041 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,041 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,042 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,042 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,042 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,042 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,042 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,042 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,042 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,042 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,042 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,047 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:29,055 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,055 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,056 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,056 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,056 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,056 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,056 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,057 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,057 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,057 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,057 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,057 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,057 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,057 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,058 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,058 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,058 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,072 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,072 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,072 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,072 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,072 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_43176-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:29,072 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>
2013-10-16 20:02:29,072 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 109 Logical Axioms: 109]
2013-10-16 20:02:29,073 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46883>)
2013-10-16 20:02:29,073 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,073 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,079 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:29,079 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,080 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,080 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,080 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,080 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,080 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,080 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,080 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,080 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,081 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,081 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,081 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,081 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,081 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,086 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:29,086 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,086 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,086 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,086 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,087 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,087 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,087 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,087 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,101 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,101 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,101 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,101 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,101 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,101 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,102 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,102 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,102 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,102 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,102 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,102 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,102 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,103 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,103 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,103 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,103 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,103 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,103 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,103 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,103 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,103 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,104 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,104 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,104 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,104 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,104 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,104 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,104 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,104 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,118 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,118 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,118 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,118 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,119 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,119 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,119 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,119 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,119 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,119 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,119 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,119 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,125 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:29,133 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,133 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,134 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,134 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,134 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,134 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,134 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,134 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,134 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,134 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,134 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,135 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,135 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,135 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,135 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,135 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,135 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,149 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,149 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,149 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,150 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,150 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46883> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:29,150 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_46883> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 111 Logical Axioms: 111]
2013-10-16 20:02:29,150 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_46883-proto>
2013-10-16 20:02:29,150 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 20:02:29,150 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 112 Logical Axioms: 112]
2013-10-16 20:02:29,150 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,151 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,158 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:29,158 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,158 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,158 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,158 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,158 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,159 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,159 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,159 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,159 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,159 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,159 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,159 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,159 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,160 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,163 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 3 ms
2013-10-16 20:02:29,164 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,164 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,164 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,164 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,164 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,165 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,165 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,165 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,179 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,179 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,179 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,179 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,179 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:29,179 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:29,180 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:29,180 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_46883-proto> is 12
2013-10-16 20:02:29,180 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_46883-proto> is 5
2013-10-16 20:02:29,180 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_50860>)
2013-10-16 20:02:29,181 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,181 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,181 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>)))
2013-10-16 20:02:29,181 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,181 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,181 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,182 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,182 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,182 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,182 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,182 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,182 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,182 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,183 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,183 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,183 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,183 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,183 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,183 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,183 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,183 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,184 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,184 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,184 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,184 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,184 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,184 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,199 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,199 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,199 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,199 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,199 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,199 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,199 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>)))
2013-10-16 20:02:29,200 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>)))
2013-10-16 20:02:29,200 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,200 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,200 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,200 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,200 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,200 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,200 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,201 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,201 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,201 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,201 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,201 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,201 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,201 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,201 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,202 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,202 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,202 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,202 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,202 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,202 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,202 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,202 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,202 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,216 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,216 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,216 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,217 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,217 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,217 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,217 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_46883>)))
2013-10-16 20:02:29,217 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,217 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,217 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,217 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,217 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,218 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,218 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,226 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,227 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,227 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,227 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,227 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,227 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,227 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,227 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,228 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,228 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,228 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,228 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,228 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,228 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,228 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,228 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,229 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,243 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,243 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,243 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,243 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,243 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_50860> // src=<http://purl.obolibrary.org/obo/CHEBI_46883-proto> via <http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>
2013-10-16 20:02:29,244 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_50860> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 114 Logical Axioms: 114]
2013-10-16 20:02:29,244 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_50860-proto>
2013-10-16 20:02:29,244 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 115 Logical Axioms: 115]
2013-10-16 20:02:29,244 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,244 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,251 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:29,251 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,251 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,251 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,251 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,251 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,252 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,252 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,252 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,252 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,252 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,252 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,252 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,252 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,253 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,257 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:29,257 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,257 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,257 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,257 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,257 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,257 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,258 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,258 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,272 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,272 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,272 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,272 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,272 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:29,272 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:29,273 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:29,273 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_50860-proto> is 20
2013-10-16 20:02:29,273 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_50860-proto> is 8
2013-10-16 20:02:29,273 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 20:02:29,273 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,273 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,274 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,274 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,274 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,274 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,274 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,274 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,274 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,274 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,275 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,275 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,275 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,275 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,275 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,275 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,275 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,285 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 10 ms
2013-10-16 20:02:29,286 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,286 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,286 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,286 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,286 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,286 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,286 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,287 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,301 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,301 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,302 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,302 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,302 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,302 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,302 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,302 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,303 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,303 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,303 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,303 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,303 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,303 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,303 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,303 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,303 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,304 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,304 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,304 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,304 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,304 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,304 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,304 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,304 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,304 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,305 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,305 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,305 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,305 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,321 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:29,321 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,322 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,322 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,322 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,322 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,322 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,322 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,322 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,323 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,323 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,323 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,331 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 8 ms
2013-10-16 20:02:29,341 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,341 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,341 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,341 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,342 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,342 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,342 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,342 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,342 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,342 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,342 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,342 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,343 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,343 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,343 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,343 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,343 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,358 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:29,358 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,358 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,359 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,359 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_50860-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:29,359 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_27594> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 116 Logical Axioms: 116]
2013-10-16 20:02:29,359 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 20:02:29,359 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>
2013-10-16 20:02:29,359 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_50860-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 117 Logical Axioms: 117]
2013-10-16 20:02:29,359 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,359 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,366 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:29,366 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,366 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,366 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,367 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,367 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,367 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,367 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,367 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,367 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,367 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,368 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,368 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,368 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,368 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,372 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:29,372 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,372 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,373 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,373 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,373 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,373 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,373 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,373 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,387 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,388 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,388 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,388 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,388 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:29,388 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:29,388 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:29,389 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_27594-proto> is 13
2013-10-16 20:02:29,389 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_27594-proto> is 5
2013-10-16 20:02:29,389 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33937>)
2013-10-16 20:02:29,389 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,389 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,389 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>)))
2013-10-16 20:02:29,390 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,390 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,390 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,390 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,390 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,390 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,391 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,391 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,391 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,391 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,391 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,391 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,391 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,391 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,392 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,392 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,392 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,392 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,392 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,392 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,392 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,393 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,393 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,393 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,407 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,407 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,407 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,407 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,407 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,407 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,408 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>)))
2013-10-16 20:02:29,408 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>)))
2013-10-16 20:02:29,408 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,408 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,408 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,408 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,408 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,408 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,408 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,409 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,409 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,409 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,409 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,409 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,409 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,409 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,409 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,409 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,410 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,410 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,410 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,410 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,410 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,410 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,410 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,410 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,424 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,424 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,424 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,424 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,425 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,425 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,425 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33937> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_27594>)))
2013-10-16 20:02:29,425 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,425 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,425 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,425 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,425 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,425 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,426 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,434 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,434 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,435 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,435 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,435 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,435 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,435 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,435 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,435 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,435 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,436 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,436 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,436 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,436 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,436 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,436 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,436 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,451 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,451 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,451 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,452 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,452 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33937> // src=<http://purl.obolibrary.org/obo/CHEBI_27594-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 20:02:29,452 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33937-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 119 Logical Axioms: 119]
2013-10-16 20:02:29,452 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252>)
2013-10-16 20:02:29,452 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,452 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,461 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 20:02:29,461 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,461 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,461 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,461 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,461 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,461 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,462 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,462 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,462 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,462 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,462 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,462 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,462 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,462 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,468 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:29,469 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,469 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,469 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,469 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,469 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,469 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,469 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,469 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,483 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,483 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,484 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,484 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,484 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,484 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,484 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,484 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,484 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,485 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,485 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,485 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,485 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,485 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,485 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,485 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,485 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,486 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,486 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,486 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,486 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,486 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,486 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,486 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,486 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,486 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,487 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,487 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,487 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,487 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,501 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,501 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,501 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,501 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,501 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,501 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,502 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,502 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,502 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,502 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,502 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,502 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,508 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:29,517 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,517 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,518 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,518 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,518 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,518 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,518 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,518 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,518 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,518 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,518 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,519 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,519 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,519 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,519 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,519 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,519 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,534 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:29,534 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,534 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,535 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,535 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33252> // src=<http://purl.obolibrary.org/obo/CHEBI_27594-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:29,535 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 20:02:29,535 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 120 Logical Axioms: 120]
2013-10-16 20:02:29,535 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_10545>)
2013-10-16 20:02:29,536 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,536 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,546 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 10 ms
2013-10-16 20:02:29,546 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,546 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,546 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,546 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,546 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,547 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,547 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,547 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,547 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,547 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,547 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,547 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,547 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,547 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,552 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:29,552 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,552 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,553 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,553 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,553 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,553 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,553 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,553 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,567 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,567 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,567 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,567 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,568 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,568 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,568 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,568 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,568 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,568 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,568 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,568 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,569 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,569 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,569 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,569 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,569 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,569 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,569 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,570 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,570 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,570 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,570 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,570 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,570 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,570 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,570 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,570 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,571 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,571 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,584 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,585 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,585 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,585 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,585 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,585 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,585 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,585 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,585 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,586 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,586 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,586 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,592 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:29,602 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,603 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,603 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,603 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,603 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,603 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,603 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,604 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,604 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,604 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,604 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,604 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,604 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,604 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,604 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,604 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,605 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,620 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,620 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,620 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,620 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,620 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_10545> // src=<http://purl.obolibrary.org/obo/CHEBI_27594-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:29,620 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 20:02:29,621 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 122 Logical Axioms: 122]
2013-10-16 20:02:29,621 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 20:02:29,621 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,621 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,632 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 10 ms
2013-10-16 20:02:29,632 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,632 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,632 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,632 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,632 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,633 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,633 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,633 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,633 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,633 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,633 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,633 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,633 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,633 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,640 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 20:02:29,640 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,640 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,640 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,640 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,640 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,640 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,641 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,641 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,654 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,654 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,655 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,655 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,655 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,655 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,656 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,656 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,656 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,656 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,656 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,656 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,657 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,657 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,657 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,657 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,657 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,657 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,657 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,658 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,658 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,658 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,658 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,658 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,658 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,658 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,658 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,659 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,659 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,659 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,673 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,673 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,673 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,674 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,674 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,674 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,674 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,674 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,674 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,674 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,674 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,675 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,680 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:29,688 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,688 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,689 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,689 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,689 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,689 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,689 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,689 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,690 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,690 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,690 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,690 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,690 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,690 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,690 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,690 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,691 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,705 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,705 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,705 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,705 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,705 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_46883-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:29,705 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>
2013-10-16 20:02:29,706 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 124 Logical Axioms: 124]
2013-10-16 20:02:29,706 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 20:02:29,706 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,706 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,712 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:29,713 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:29,713 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,713 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,713 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,713 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,713 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,713 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,713 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,714 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,714 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,714 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,714 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,714 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,714 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,714 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,714 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,714 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,715 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,715 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,715 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,715 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,715 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,715 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,715 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,729 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,729 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,729 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,729 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,730 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,730 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,730 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:29,730 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:29,730 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,730 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,730 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,730 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,731 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,731 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,731 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,731 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,731 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,731 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,731 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,732 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,732 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,732 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,732 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,732 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,732 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,732 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,733 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,733 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,733 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,733 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,733 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,733 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,747 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,747 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,747 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,747 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,747 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,747 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,748 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:29,748 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,748 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,748 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,748 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,748 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,748 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,748 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,757 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,757 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,757 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,757 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,757 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,758 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,758 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,758 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,758 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,758 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,758 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,758 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,758 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,758 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,758 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,759 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,759 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,773 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,775 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,775 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,775 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,775 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/chebi#has_parent_hydride>
2013-10-16 20:02:29,775 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 126 Logical Axioms: 126]
2013-10-16 20:02:29,775 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 20:02:29,776 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,776 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,782 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:29,782 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,782 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,783 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,783 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,783 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,783 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,783 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,783 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,784 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,784 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,784 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,784 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,784 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,784 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,789 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:29,790 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,790 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,790 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,790 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,790 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,790 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,791 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,791 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,808 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 17 ms
2013-10-16 20:02:29,808 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,808 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,809 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,809 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,809 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,809 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,809 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,809 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,809 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,810 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,810 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,810 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,810 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,810 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,810 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,810 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,811 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,811 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,811 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,811 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,811 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,811 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,811 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,812 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,812 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,812 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,812 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,812 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,812 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,829 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 17 ms
2013-10-16 20:02:29,830 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,830 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,830 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,830 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,830 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,830 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,831 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,831 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,831 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,831 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,831 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,837 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:29,846 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,846 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,847 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,847 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,847 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,847 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,847 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,847 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,847 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,847 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,848 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,848 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,848 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,848 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,848 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,848 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,848 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,862 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,862 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,863 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,863 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,863 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:29,863 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 20:02:29,863 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 127 Logical Axioms: 127]
2013-10-16 20:02:29,863 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46629>)
2013-10-16 20:02:29,864 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,864 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,871 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:29,871 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,871 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,871 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,871 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,871 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,872 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,872 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,872 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,872 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,872 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,872 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,872 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,872 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,872 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,877 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:29,877 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,877 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,878 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,878 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,878 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,878 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,878 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,878 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,892 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,892 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,892 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,892 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,892 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,898 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,898 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,898 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,898 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,898 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,898 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,899 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,899 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,899 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,899 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,899 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,899 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,899 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,899 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,899 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,900 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,900 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,900 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,900 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,900 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,900 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,900 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,900 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,900 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,900 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,914 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,915 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,915 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,915 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,915 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,915 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,915 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,915 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,915 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,916 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,916 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,916 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,921 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:29,929 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,929 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,930 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,930 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,930 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,930 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,931 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,931 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,931 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:29,931 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,931 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,931 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,931 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,931 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,931 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,931 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,932 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,946 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:29,946 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,946 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,946 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,946 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46629> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:29,946 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_46629> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 129 Logical Axioms: 129]
2013-10-16 20:02:29,946 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_46629-proto>
2013-10-16 20:02:29,947 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 20:02:29,947 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 130 Logical Axioms: 130]
2013-10-16 20:02:29,947 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,947 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,954 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:29,954 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,954 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,954 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,954 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,954 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,954 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,955 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,955 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,955 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,955 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,955 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,955 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,955 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,955 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,962 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 20:02:29,962 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,962 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,963 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,963 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,963 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,963 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,963 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,964 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:29,977 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:29,978 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:29,978 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:29,978 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:29,978 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:29,978 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:29,978 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:29,979 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_46629-proto> is 9
2013-10-16 20:02:29,979 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_46629-proto> is 4
2013-10-16 20:02:29,979 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 20:02:29,979 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:29,979 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:29,979 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:29,979 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:29,979 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:29,979 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:29,980 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:29,980 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:29,980 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:29,980 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:29,980 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:29,980 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:29,980 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:29,980 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:29,981 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:29,981 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:29,981 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:29,985 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:29,985 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:29,985 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:29,985 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:29,986 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:29,986 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:29,986 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:29,986 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:29,986 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,000 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,000 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,000 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,001 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,001 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,001 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,001 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,001 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,001 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,001 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,002 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,002 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,002 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,002 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,002 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,002 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,002 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,002 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,002 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,003 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,003 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,003 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,003 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,003 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,003 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,003 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,003 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,003 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,003 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,004 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,017 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,017 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,018 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,018 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,018 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,018 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,018 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,018 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,018 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,018 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,019 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,019 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,023 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:30,032 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,032 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,032 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,032 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,032 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,033 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,033 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,033 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,033 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,033 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,033 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,033 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,033 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,033 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,033 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,034 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,034 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,048 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,048 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,048 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,048 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,048 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_46629-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:30,048 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>
2013-10-16 20:02:30,049 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 132 Logical Axioms: 132]
2013-10-16 20:02:30,049 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23019>)
2013-10-16 20:02:30,049 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,049 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,055 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,055 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,056 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,056 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,056 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,056 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,056 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,056 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,056 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,056 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,056 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,057 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,057 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,057 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,057 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,061 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:30,061 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,061 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,061 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,062 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,062 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,062 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,062 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,062 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,077 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,077 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,077 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,077 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,077 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,077 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,078 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,078 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,078 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,078 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,078 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,078 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,078 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,078 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,078 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,078 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,079 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,079 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,079 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,079 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,079 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,079 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,079 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,079 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,079 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,079 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,080 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,080 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,080 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,080 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,094 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,094 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,094 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,094 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,094 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,094 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,095 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,095 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,095 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,095 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,095 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,095 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,100 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:30,108 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,109 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,109 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,109 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,109 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,109 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,109 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,110 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,110 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,110 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,110 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,110 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,110 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,110 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,110 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,110 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,111 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,125 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,125 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,125 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,125 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,125 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_23019> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:30,125 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_23019> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 134 Logical Axioms: 134]
2013-10-16 20:02:30,126 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_23019-proto>
2013-10-16 20:02:30,126 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 20:02:30,126 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 135 Logical Axioms: 135]
2013-10-16 20:02:30,126 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,126 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,133 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,133 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,133 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,133 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,133 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,133 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,133 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,133 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,134 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,134 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,134 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,134 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,134 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,134 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,134 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,139 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:30,139 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,139 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,139 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,139 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,139 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,140 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,140 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,140 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,153 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,154 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,154 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,154 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,154 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:30,154 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:30,154 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:30,155 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_23019-proto> is 12
2013-10-16 20:02:30,155 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_23019-proto> is 5
2013-10-16 20:02:30,155 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_50860>)
2013-10-16 20:02:30,155 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,155 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,155 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>)))
2013-10-16 20:02:30,155 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,155 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,155 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,156 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,156 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,156 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,156 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,156 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,156 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,156 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,156 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,156 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,157 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,157 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,157 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,157 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,157 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,157 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,157 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,157 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,158 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,158 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,158 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,158 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,172 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,172 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,172 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,172 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,172 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,172 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,172 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>)))
2013-10-16 20:02:30,173 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>)))
2013-10-16 20:02:30,173 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,173 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,173 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,173 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,173 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,173 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,173 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,173 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,174 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,174 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,174 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,174 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,174 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,174 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,174 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,174 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,174 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,174 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,175 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,175 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,175 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,175 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,175 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,175 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,189 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,189 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,190 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,190 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,190 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,190 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,190 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_50860> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23019>)))
2013-10-16 20:02:30,190 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,190 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,190 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,190 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,191 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,191 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,191 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,199 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,199 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,199 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,199 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,200 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,200 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,200 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,200 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,200 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,200 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,200 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,200 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,201 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,201 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,201 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,201 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,201 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,215 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,215 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,215 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,216 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,216 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_50860> // src=<http://purl.obolibrary.org/obo/CHEBI_23019-proto> via <http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>
2013-10-16 20:02:30,216 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 137 Logical Axioms: 137]
2013-10-16 20:02:30,216 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 20:02:30,216 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,216 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,223 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,223 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,223 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,224 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,224 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,224 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,224 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,224 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,224 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,224 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,224 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,224 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,225 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,225 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,225 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,228 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 3 ms
2013-10-16 20:02:30,229 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,229 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,229 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,229 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,229 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,229 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,229 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,229 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,243 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,243 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,244 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,244 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,244 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,244 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,244 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,244 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,244 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,245 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,245 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,245 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,245 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,245 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,245 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,245 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,245 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,245 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,246 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,246 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,246 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,246 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,246 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,246 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,246 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,246 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,246 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,246 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,247 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,247 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,260 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,261 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,261 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,261 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,261 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,261 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,261 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,261 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,261 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,262 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,262 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,262 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,266 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:30,275 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,275 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,275 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,275 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,275 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,275 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,275 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,276 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,276 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,276 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,276 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,276 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,276 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,276 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,276 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,277 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,277 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,293 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:30,293 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,293 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,293 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,294 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_23019-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:30,294 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>
2013-10-16 20:02:30,294 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 138 Logical Axioms: 138]
2013-10-16 20:02:30,294 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:30,294 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,294 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,301 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,301 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,301 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,302 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,302 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,302 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,302 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,302 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,302 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,302 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,302 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,303 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,303 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,303 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,303 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,310 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 20:02:30,310 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,310 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,311 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,311 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,311 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,311 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,311 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,311 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,325 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,325 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,325 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,325 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,326 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,326 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,326 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,326 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,326 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,326 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,326 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,327 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,327 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,327 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,327 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,327 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,327 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,327 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,327 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,328 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,328 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,328 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,328 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,328 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,328 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,328 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,328 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,328 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,328 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,329 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,344 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:30,344 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,345 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,345 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,345 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,345 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,345 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,345 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,345 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,346 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,346 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,346 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,352 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:30,360 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,361 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,361 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,361 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,361 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,361 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,361 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,362 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,362 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,362 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,362 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,362 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,362 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,362 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,362 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,362 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,363 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,377 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,377 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,377 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,377 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,377 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:30,377 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 20:02:30,377 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 140 Logical Axioms: 140]
2013-10-16 20:02:30,378 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_39141>)
2013-10-16 20:02:30,378 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,378 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,384 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:30,384 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,384 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,385 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,385 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,385 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,385 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,385 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,385 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,385 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,386 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,386 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,386 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,386 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,386 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,386 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,386 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,386 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,386 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,387 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,387 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,387 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,387 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,387 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,387 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,401 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,401 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,401 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,401 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,401 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,402 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,402 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:30,402 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:30,402 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,402 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,402 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,402 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,402 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,402 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,403 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,403 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,403 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,403 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,403 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,403 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,403 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,403 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,403 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,404 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,404 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,404 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,404 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,404 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,404 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,404 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,404 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,404 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,418 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,418 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,418 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,419 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,419 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,419 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,419 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:30,419 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,419 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,419 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,419 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,419 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,420 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,420 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,428 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,428 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,428 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,428 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,428 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,429 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,429 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,429 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,429 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,429 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,429 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,429 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,429 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,430 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,430 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,430 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,430 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,444 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,444 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,444 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,445 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,445 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_39141> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 20:02:30,445 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_39141> <http://purl.obolibrary.org/obo/CHEBI_39141-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 142 Logical Axioms: 142]
2013-10-16 20:02:30,445 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_39141-proto>
2013-10-16 20:02:30,445 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_39141-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 143 Logical Axioms: 143]
2013-10-16 20:02:30,445 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,445 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,452 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,452 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,452 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,452 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,453 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,453 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,453 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,453 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,453 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,453 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,453 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,453 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,453 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,454 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,454 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,459 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:30,459 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,459 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,459 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,459 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,460 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,460 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,460 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,460 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,474 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,474 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,474 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,474 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,474 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:30,474 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:30,475 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:30,475 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_39141-proto> is 6
2013-10-16 20:02:30,475 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_39141-proto> is 0
2013-10-16 20:02:30,475 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_37022>)
2013-10-16 20:02:30,475 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,475 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,475 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:30,475 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,475 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,476 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,476 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,476 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,476 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,476 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,476 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,476 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,476 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,477 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,477 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,477 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,477 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,477 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,477 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,477 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,477 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,477 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,478 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,478 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,478 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,478 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,478 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,492 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,492 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,492 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,492 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,493 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,493 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,493 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:30,493 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:30,493 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,493 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,493 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,493 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,493 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,494 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,494 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,494 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,494 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,494 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,494 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,494 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,494 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,494 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,495 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,495 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,495 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,495 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,495 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,495 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,495 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,495 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,495 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,495 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,509 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,509 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,510 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,510 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,510 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,510 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,510 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_37022> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33709>)))
2013-10-16 20:02:30,510 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,510 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,510 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,510 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,511 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,511 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,511 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,519 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,519 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,520 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,520 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,520 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,520 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,520 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,520 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,520 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,520 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,521 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,521 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,521 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,521 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,521 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,521 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,521 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,535 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,535 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,535 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,536 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,536 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_37022> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 20:02:30,536 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_37022> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 144 Logical Axioms: 144]
2013-10-16 20:02:30,536 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_37022-proto>
2013-10-16 20:02:30,536 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 145 Logical Axioms: 145]
2013-10-16 20:02:30,536 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,536 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,543 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,543 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,543 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,543 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,543 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,544 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,544 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,544 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,544 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,544 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,544 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,544 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,544 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,544 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,545 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,549 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:30,549 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,549 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,549 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,550 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,550 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,550 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,550 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,550 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,564 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,564 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,564 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,564 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,565 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:30,565 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:30,565 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:30,566 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_37022-proto> is 45
2013-10-16 20:02:30,566 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_37022-proto> is 15
2013-10-16 20:02:30,566 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 20:02:30,567 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,567 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,567 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,567 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,567 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,567 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,568 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,568 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,568 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,568 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,568 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,568 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,568 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,568 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,568 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,569 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,569 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,578 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 9 ms
2013-10-16 20:02:30,578 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,578 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,579 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,579 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,579 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,579 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,579 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,579 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,593 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,593 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,593 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,593 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,593 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,594 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,594 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,594 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,594 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,594 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,594 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,594 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,595 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,595 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,595 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,595 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,595 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,595 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,595 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,595 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,595 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,595 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,596 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,596 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,596 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,596 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,596 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,596 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,596 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,596 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,610 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,611 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,611 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,611 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,611 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,611 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,611 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,611 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,611 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,612 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,612 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,612 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,616 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:30,625 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,625 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,625 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,625 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,625 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,625 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,626 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,626 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,626 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,626 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,626 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,626 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,626 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,626 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,626 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,627 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,627 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,641 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,641 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,641 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,641 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,641 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_37022-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:30,641 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>
2013-10-16 20:02:30,642 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 146 Logical Axioms: 146]
2013-10-16 20:02:30,642 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_33709>)
2013-10-16 20:02:30,642 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,642 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,649 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>)))
2013-10-16 20:02:30,649 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,649 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,649 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,649 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,649 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,649 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,650 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,650 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,650 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,650 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,650 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,650 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,650 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,650 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,650 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,651 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,651 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,651 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,651 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,651 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,651 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,651 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,651 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,651 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,665 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,665 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,665 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,666 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,666 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,666 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,666 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>)))
2013-10-16 20:02:30,666 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>)))
2013-10-16 20:02:30,666 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,666 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,666 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,667 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,667 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,667 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,667 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,667 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,667 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,667 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,667 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,667 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,668 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,668 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,668 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,668 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,668 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,668 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,668 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,668 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,668 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,668 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,669 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,669 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,683 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,683 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,683 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,683 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,683 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,683 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,683 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33709> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_37022>)))
2013-10-16 20:02:30,683 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,683 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,684 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,684 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,684 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,684 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,684 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,692 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,693 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,693 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,693 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,693 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,693 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,693 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,693 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,694 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,694 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,694 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,694 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,694 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,694 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,694 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,694 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,694 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,708 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,709 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,709 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,709 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,709 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33709> // src=<http://purl.obolibrary.org/obo/CHEBI_37022-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 20:02:30,709 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 148 Logical Axioms: 148]
2013-10-16 20:02:30,709 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:30,709 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,709 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,716 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,716 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,717 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,717 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,717 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,717 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,717 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,717 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,717 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,717 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,718 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,718 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,718 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,718 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,718 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,722 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:30,722 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,723 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,723 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,723 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,723 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,723 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,723 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,723 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,737 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,737 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,738 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,738 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,738 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,738 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,738 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,738 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,738 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,739 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,739 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,739 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,739 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,739 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,739 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,739 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,739 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,739 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,740 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,740 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,740 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,740 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,740 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,740 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,740 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,740 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,740 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,740 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,741 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,741 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,755 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,755 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,755 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,755 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,755 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,755 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,755 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,755 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,755 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,756 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,756 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,756 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,771 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 15 ms
2013-10-16 20:02:30,780 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,780 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,780 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,780 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,781 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,781 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,781 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,781 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,781 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,781 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,781 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,781 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,782 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,782 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,782 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,782 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,782 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,796 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,796 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,796 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,796 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,797 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_37022-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:30,797 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>
2013-10-16 20:02:30,797 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 149 Logical Axioms: 149]
2013-10-16 20:02:30,797 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 20:02:30,797 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,797 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,804 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:30,805 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,805 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,805 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,805 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,805 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,805 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,806 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,806 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,806 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,806 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,806 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,806 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,806 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,806 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,812 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:30,812 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,812 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,812 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,812 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,812 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,813 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,813 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,813 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,827 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,827 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,828 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,828 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,828 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,828 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,828 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,828 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,828 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,829 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,829 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,829 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,829 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,829 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,829 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,830 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,830 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,830 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,830 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,830 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,830 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,830 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,830 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,830 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,831 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,831 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,831 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,831 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,831 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,831 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,845 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,845 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,845 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,845 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,845 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,845 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,846 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,846 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,846 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,846 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,846 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,846 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,851 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:30,860 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,860 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,861 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,861 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,861 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,861 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,861 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,861 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,861 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,861 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,861 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,862 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,862 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,862 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,862 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,862 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,862 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,876 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,876 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,876 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,877 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,877 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_37022-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:30,877 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>
2013-10-16 20:02:30,877 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 151 Logical Axioms: 151]
2013-10-16 20:02:30,877 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 20:02:30,877 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,877 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,884 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,884 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,884 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,884 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,885 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,885 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,885 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,885 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,885 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,885 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,885 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,885 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,885 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,886 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,886 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,891 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:30,891 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,891 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,892 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,892 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,892 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,892 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,892 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,892 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,906 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,907 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,907 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,907 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,907 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,907 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,907 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,907 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,907 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,908 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,908 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,908 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,908 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,908 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,908 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,908 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,908 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,909 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,909 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,909 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,909 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,909 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,909 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,909 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,909 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,909 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,909 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,910 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,910 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,910 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,923 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,923 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,924 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,924 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,924 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,924 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,924 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,924 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,924 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,924 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,925 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,925 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,931 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:30,940 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,940 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,941 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,941 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,941 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,941 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,941 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,941 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,941 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,941 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,941 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,942 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,942 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,942 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,942 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,942 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,942 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,956 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:30,956 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,956 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,957 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,957 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_37022-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:30,957 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>
2013-10-16 20:02:30,957 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 153 Logical Axioms: 153]
2013-10-16 20:02:30,957 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 20:02:30,957 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,957 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,964 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:30,964 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,964 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,964 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,964 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,964 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,965 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,965 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,965 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,965 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,965 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,965 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,965 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,965 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,966 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,973 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 20:02:30,973 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,973 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,973 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,973 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,973 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,974 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,974 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,974 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:30,988 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:30,988 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:30,988 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:30,988 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:30,988 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:30,988 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:30,989 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:30,989 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:30,989 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:30,989 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:30,989 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:30,989 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:30,989 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:30,989 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:30,989 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:30,990 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:30,990 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:30,990 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:30,990 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:30,990 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:30,990 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:30,990 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:30,991 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:30,991 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:30,991 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:30,991 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:30,991 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:30,991 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:30,991 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:30,991 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,005 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,005 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,005 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,006 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,006 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,006 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,006 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,006 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,006 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,006 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,006 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,006 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,012 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:31,021 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,021 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,021 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,021 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,021 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,021 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,021 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,022 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,022 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,022 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,022 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,022 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,022 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,022 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,022 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,022 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,023 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,037 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:31,037 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,037 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,037 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,037 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:31,037 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 20:02:31,037 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 155 Logical Axioms: 155]
2013-10-16 20:02:31,038 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 20:02:31,038 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,038 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,044 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:31,044 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,044 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,045 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,045 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,045 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,045 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,045 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,045 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,045 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,045 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,046 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,046 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,046 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,046 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,053 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 20:02:31,054 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,054 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,054 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,054 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,054 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,054 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,054 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,054 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,068 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,068 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,069 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,069 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,069 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,069 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,069 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,069 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,069 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,069 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,070 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,070 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,070 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,070 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,070 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,070 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,070 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,070 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,071 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,071 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,071 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,071 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,071 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,071 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,071 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,071 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,071 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,072 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,072 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,072 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,086 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:31,086 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,086 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,086 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,086 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,086 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,087 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,087 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,087 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,087 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,087 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,087 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,092 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:31,101 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,101 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,102 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,102 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,102 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,102 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,102 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,102 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,102 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,102 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,102 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,103 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,103 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,103 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,103 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,103 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,103 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,118 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:31,118 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,118 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,118 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,118 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_33709-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:31,118 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>
2013-10-16 20:02:31,119 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 157 Logical Axioms: 157]
2013-10-16 20:02:31,119 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 20:02:31,119 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,119 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,126 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:31,126 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,126 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,126 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,126 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,126 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,126 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,126 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,127 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,127 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,127 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,127 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,127 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,127 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,127 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,133 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 20:02:31,134 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,134 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,134 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,134 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,134 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,134 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,134 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,135 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,148 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,148 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,149 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,149 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,149 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,149 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,149 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,149 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,149 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,149 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,150 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,150 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,150 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,150 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,150 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,150 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,150 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,150 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,150 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,151 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,151 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,151 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,151 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,151 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,151 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,151 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,151 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,151 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,152 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,152 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,166 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:31,166 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,166 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,166 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,166 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,166 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,167 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,167 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,167 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,167 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,167 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,167 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,174 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 7 ms
2013-10-16 20:02:31,184 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,184 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,184 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,185 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,185 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,185 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,185 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,185 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,185 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,185 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,185 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,185 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,185 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,186 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,186 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,186 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,186 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,200 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,200 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,200 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,200 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,200 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_33708-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:31,201 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33708-proto>
2013-10-16 20:02:31,201 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33708-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33708-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 159 Logical Axioms: 159]
2013-10-16 20:02:31,201 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:31,201 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,201 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,208 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:31,208 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,208 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,208 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,208 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,208 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,209 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,209 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,209 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,209 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,209 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,209 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,209 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,209 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,210 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,215 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:31,215 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,215 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,215 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,215 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,216 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,216 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,216 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,216 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,230 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,230 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,230 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,230 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,230 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,230 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,230 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,231 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,231 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,231 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,231 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,231 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,231 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,231 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,231 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,231 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,231 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,232 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,232 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,232 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,232 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,232 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,232 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,232 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,232 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,232 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,232 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,233 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,233 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,233 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,246 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,247 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,247 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,247 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,247 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,247 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,247 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,247 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,247 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,247 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,248 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,248 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,254 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:31,263 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,263 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,264 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,264 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,264 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,264 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,264 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,264 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,264 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,265 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,265 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,265 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,265 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,265 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,265 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,265 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,265 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,279 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:31,279 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,280 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,280 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,280 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:31,280 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 20:02:31,280 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 161 Logical Axioms: 161]
2013-10-16 20:02:31,280 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_60466>)
2013-10-16 20:02:31,280 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,281 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,287 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:31,287 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:31,287 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,287 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,287 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,288 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,288 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,288 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,288 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,288 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,288 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,288 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,288 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,289 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,289 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,289 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,289 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,289 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,289 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,289 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,290 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,290 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,290 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,290 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,290 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,304 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,304 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,304 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,304 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,304 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,304 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,304 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:31,305 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:31,305 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,305 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,305 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,305 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,305 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,305 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,305 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,305 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,305 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,305 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,306 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,306 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,306 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,306 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,306 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,306 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,306 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,306 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,306 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,306 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,307 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,307 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,307 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,307 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,320 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,321 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,321 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,321 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,321 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,321 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,321 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16670>)))
2013-10-16 20:02:31,321 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,321 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,321 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,322 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,322 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,322 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,322 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,332 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,333 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,333 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,333 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,333 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,333 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,333 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,333 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,333 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,334 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,334 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,334 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,334 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,334 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,334 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,334 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,334 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,351 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:31,351 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,351 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,351 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,351 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_60466> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 20:02:31,351 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_60466> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 163 Logical Axioms: 163]
2013-10-16 20:02:31,352 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 20:02:31,352 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 164 Logical Axioms: 164]
2013-10-16 20:02:31,352 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,352 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,360 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:31,360 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,360 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,360 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,360 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,360 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,361 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,361 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,361 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,361 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,361 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,361 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,361 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,361 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,362 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,369 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 7 ms
2013-10-16 20:02:31,369 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,370 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,370 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,370 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,370 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,371 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,371 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,371 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,385 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,385 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,385 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,385 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,385 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:31,385 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:31,386 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:31,386 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_60466-proto> is 29
2013-10-16 20:02:31,386 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_60466-proto> is 11
2013-10-16 20:02:31,386 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16670>)
2013-10-16 20:02:31,387 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,387 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,387 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 20:02:31,387 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,387 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,387 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,387 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,387 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,387 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,388 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,388 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,388 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,388 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,388 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,388 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,388 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,388 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,388 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,389 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,389 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,389 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,389 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,389 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,389 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,389 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,389 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,389 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,403 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,403 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,404 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,404 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,404 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,404 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,404 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 20:02:31,404 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 20:02:31,404 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,404 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,404 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,405 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,405 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,405 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,405 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,405 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,405 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,405 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,405 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,405 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,406 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,406 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,406 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,406 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,406 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,406 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,406 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,406 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,406 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,406 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,407 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,407 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,421 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:31,421 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,421 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,421 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,421 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,421 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,422 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16670> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 20:02:31,422 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,422 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,422 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,422 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,422 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,422 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,422 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,430 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,430 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,431 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,431 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,431 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,431 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,431 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,431 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,431 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,431 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,432 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,432 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,432 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,432 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,432 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,432 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,432 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,446 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:31,446 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,446 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,447 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,447 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16670> // src=<http://purl.obolibrary.org/obo/CHEBI_60466-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 20:02:31,447 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 165 Logical Axioms: 165]
2013-10-16 20:02:31,447 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_60466>)
2013-10-16 20:02:31,447 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,447 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,454 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 20:02:31,454 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:31,455 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,455 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,455 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,455 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,455 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,455 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,455 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,455 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,456 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,456 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,456 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,456 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,456 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,456 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,456 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,456 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,456 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,456 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,457 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,457 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,457 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,457 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,457 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,471 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,471 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,471 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,471 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,471 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,471 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,471 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 20:02:31,472 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 20:02:31,472 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,472 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,472 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,472 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,472 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,472 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,472 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,472 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,472 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,473 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,473 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,473 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,473 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,473 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,473 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,473 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,473 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,473 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,474 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,474 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,474 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,474 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,474 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,474 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,488 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,488 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,488 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,488 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,488 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,488 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,489 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_60466>)))
2013-10-16 20:02:31,489 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,489 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,489 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,489 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,489 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,489 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,489 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,497 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,498 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,498 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,498 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,498 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,498 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,498 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,498 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,498 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,499 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,499 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,499 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,499 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,499 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,499 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,499 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,499 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,513 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,513 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,513 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,514 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,514 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_60466> // src=<http://purl.obolibrary.org/obo/CHEBI_60466-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 20:02:31,514 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 166 Logical Axioms: 166]
2013-10-16 20:02:31,514 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 20:02:31,514 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,514 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,521 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:31,521 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,521 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,521 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,521 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,521 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,522 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,522 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,522 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,522 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,522 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,522 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,522 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,522 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,522 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,528 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:31,528 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,528 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,528 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,528 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,528 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,529 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,529 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,529 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,542 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,543 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,543 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,543 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,543 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,543 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,543 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,543 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,543 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,544 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,544 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,544 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,544 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,544 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,544 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,544 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,544 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,544 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,545 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,545 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,545 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,545 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,545 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,545 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,545 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,545 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,546 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,546 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,546 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,546 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,560 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,560 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,560 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,560 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,560 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,560 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,560 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,561 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,561 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,561 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,561 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,561 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,566 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:31,575 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,575 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,575 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,575 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,575 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,576 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,576 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,576 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,576 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,576 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,576 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,576 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,576 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,576 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,577 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,577 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,577 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,592 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:31,592 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,592 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,592 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,592 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_60466-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:31,592 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 20:02:31,593 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 167 Logical Axioms: 167]
2013-10-16 20:02:31,593 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 20:02:31,593 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,593 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,600 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:31,600 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,600 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,600 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,600 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,600 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,601 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,601 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,601 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,601 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,601 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,601 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,601 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,601 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,601 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,606 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:31,606 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,607 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,607 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,607 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,607 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,607 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,607 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,607 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,621 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,621 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,621 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,622 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,622 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,622 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,622 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,622 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,622 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,622 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,622 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,623 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,623 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,623 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,623 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,623 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,623 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,623 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,623 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,623 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,624 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,624 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,624 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,624 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,624 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,624 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,624 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,624 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,624 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,624 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,638 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,638 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,638 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,638 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,638 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,639 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,639 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,639 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,639 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,639 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,639 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,639 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,645 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:31,654 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,654 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,654 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,654 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,655 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,655 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,655 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,655 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,655 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,655 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,655 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,655 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,655 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,656 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,656 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,656 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,656 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,670 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,670 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,670 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,670 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,670 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_60466-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:31,670 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 20:02:31,671 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 169 Logical Axioms: 169]
2013-10-16 20:02:31,671 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23004>)
2013-10-16 20:02:31,671 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,671 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,677 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:31,677 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,678 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,678 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,678 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,678 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,678 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,678 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,678 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,678 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,679 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,679 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,679 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,679 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,679 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,685 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 20:02:31,686 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,686 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,686 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,686 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,686 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,686 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,686 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,686 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,702 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:31,702 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,703 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,703 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,703 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,703 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,703 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,703 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,703 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,704 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,704 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,704 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,704 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,704 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,704 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,704 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,704 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,704 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,705 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,705 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,705 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,705 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,705 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,705 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,705 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,705 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,705 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,705 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,705 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,706 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,719 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,720 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,720 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,720 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,720 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,720 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,720 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,720 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,720 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,720 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,721 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,721 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,726 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:31,734 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,735 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,735 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,735 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,735 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,735 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,735 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,735 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,736 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,736 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,736 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,736 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,736 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,736 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,736 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,736 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,736 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,750 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,750 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,751 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,751 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,751 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_23004> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:31,751 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_23004> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 171 Logical Axioms: 171]
2013-10-16 20:02:31,751 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_23004-proto>
2013-10-16 20:02:31,751 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 20:02:31,751 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 172 Logical Axioms: 172]
2013-10-16 20:02:31,751 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,752 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,758 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:31,758 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,758 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,759 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,759 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,759 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,759 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,759 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,759 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,759 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,759 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,760 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,760 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,760 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,760 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,764 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:31,764 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,764 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,765 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,765 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,765 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,765 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,765 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,765 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,779 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,779 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,779 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,780 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,780 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:31,780 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:31,780 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:31,780 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_23004-proto> is 16
2013-10-16 20:02:31,780 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_23004-proto> is 8
2013-10-16 20:02:31,781 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 20:02:31,781 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,781 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,781 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,781 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,781 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,781 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,782 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,782 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,782 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,782 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,782 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,782 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,782 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,782 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,782 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,782 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,783 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,787 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:31,787 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,787 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,787 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,788 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,788 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,788 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,788 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,788 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,803 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:31,803 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,803 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,803 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,803 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,803 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,804 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,804 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,804 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,804 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,804 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,804 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,804 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,804 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,804 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,805 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,805 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,805 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,805 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,805 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,805 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,805 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,805 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,805 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,806 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,806 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,806 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,806 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,806 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,806 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,820 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,820 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,820 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,820 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,820 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,821 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,821 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,821 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,821 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,821 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,821 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,821 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,825 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:31,834 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,834 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,834 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,834 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,834 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,834 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,834 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,835 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,835 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,835 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,835 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,835 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,835 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,835 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,835 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,836 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,836 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,849 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,850 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,850 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,850 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,850 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_23004-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:31,850 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>
2013-10-16 20:02:31,850 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 174 Logical Axioms: 174]
2013-10-16 20:02:31,850 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_28616>)
2013-10-16 20:02:31,851 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,851 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,857 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>)))
2013-10-16 20:02:31,857 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:31,857 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,858 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,858 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,858 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,858 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,858 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,858 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,858 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,858 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,859 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,859 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,859 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,859 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,859 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,859 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,859 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,859 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,860 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,860 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,860 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,860 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,860 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,860 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,874 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,874 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,874 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,874 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,875 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,875 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,875 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>)))
2013-10-16 20:02:31,875 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>)))
2013-10-16 20:02:31,875 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,875 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,875 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,875 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,875 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,876 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,876 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,876 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,876 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,876 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,876 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,876 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,876 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,876 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,877 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,877 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,877 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,877 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,877 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,877 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,877 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,877 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,877 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,877 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,891 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,891 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,891 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,892 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,892 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,892 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,892 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_23004>)))
2013-10-16 20:02:31,892 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,892 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,892 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,892 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,892 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,892 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,893 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,901 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,901 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,901 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,901 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,901 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,902 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,902 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,902 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,902 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,902 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,902 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,902 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,902 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,902 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,902 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,903 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,903 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,917 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:31,917 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,917 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,917 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,917 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_28616> // src=<http://purl.obolibrary.org/obo/CHEBI_23004-proto> via <http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>
2013-10-16 20:02:31,917 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_28616> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 176 Logical Axioms: 176]
2013-10-16 20:02:31,917 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:31,918 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 177 Logical Axioms: 177]
2013-10-16 20:02:31,918 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,918 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,924 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:31,924 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,925 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,925 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,925 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,925 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,925 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,925 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,925 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,925 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,926 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,926 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,926 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,926 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,926 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,930 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:31,930 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,930 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,931 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,931 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,931 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,931 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,931 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,931 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,945 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,945 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,946 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,946 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,946 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:31,946 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:31,946 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:31,947 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_28616-proto> is 62
2013-10-16 20:02:31,947 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_28616-proto> is 25
2013-10-16 20:02:31,948 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_43176>)
2013-10-16 20:02:31,948 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,948 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,948 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,948 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,948 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,948 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,948 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,949 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,949 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,949 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,949 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,949 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,949 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,949 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,949 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,949 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,950 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,954 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:31,954 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,954 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,954 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,954 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,955 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,955 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,955 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,955 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,969 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,969 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,969 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,969 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,969 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,969 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,970 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,970 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,970 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,970 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,970 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,970 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,970 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:31,970 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:31,970 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:31,971 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:31,971 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:31,971 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:31,971 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:31,971 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:31,971 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:31,971 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:31,971 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:31,971 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:31,971 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:31,972 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:31,972 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:31,972 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:31,972 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:31,972 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:31,986 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:31,986 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:31,986 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:31,986 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:31,986 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:31,986 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:31,987 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:31,987 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:31,987 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:31,987 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:31,987 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:31,987 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:31,991 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:32,000 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,000 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,000 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,001 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,001 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,001 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,001 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,001 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,001 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,001 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,001 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,001 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,001 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,002 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,002 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,002 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,002 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,017 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,017 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,017 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,017 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,017 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_43176> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:32,017 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:32,018 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 178 Logical Axioms: 178]
2013-10-16 20:02:32,018 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46883>)
2013-10-16 20:02:32,018 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,018 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,024 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:32,025 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,025 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,025 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,025 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,025 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,025 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,025 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,025 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,026 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,026 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,026 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,026 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,026 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,026 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,030 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:32,031 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,031 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,031 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,031 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,031 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,031 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,031 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,031 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,045 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,046 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,046 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,046 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,046 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,046 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,046 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,046 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,046 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,047 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,047 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,047 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,047 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,047 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,047 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,047 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,047 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,047 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,048 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,048 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,048 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,048 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,048 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,048 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,048 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,048 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,048 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,048 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,049 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,049 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,062 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,062 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,063 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,063 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,063 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,063 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,063 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,063 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,063 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,063 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,063 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,064 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,068 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:32,077 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,077 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,077 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,077 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,077 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,078 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,078 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,078 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,078 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,078 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,078 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,078 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,078 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,078 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,078 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,079 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,079 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,093 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,093 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,093 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,093 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,093 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46883> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:32,094 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:32,094 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 180 Logical Axioms: 180]
2013-10-16 20:02:32,094 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 20:02:32,094 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,094 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,100 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,101 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:32,101 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,101 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,101 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,101 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,101 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,101 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,102 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,102 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,102 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,102 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,102 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,102 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,102 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,102 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,102 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,102 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,103 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,103 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,103 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,103 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,103 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,103 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,103 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,117 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,117 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,117 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,118 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,118 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,118 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,118 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,118 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,118 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,118 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,118 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,119 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,119 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,119 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,119 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,119 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,119 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,119 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,119 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,119 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,120 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,120 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,120 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,120 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,120 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,120 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,120 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,120 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,120 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,121 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,121 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,121 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,136 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:32,136 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,136 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,136 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,136 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,137 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,137 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,137 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,137 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,137 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,137 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,137 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,137 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,138 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,146 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,146 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,147 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,147 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,147 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,147 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,147 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,147 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,147 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,147 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,147 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,148 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,148 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,148 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,148 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,148 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,148 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,162 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,162 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,162 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,162 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,163 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/chebi#has_parent_hydride>
2013-10-16 20:02:32,163 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 182 Logical Axioms: 182]
2013-10-16 20:02:32,163 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_13941>)
2013-10-16 20:02:32,163 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,163 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,171 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,171 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 20:02:32,172 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,172 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,172 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,172 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,172 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,172 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,172 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,172 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,173 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,173 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,173 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,173 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,173 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,173 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,173 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,173 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,173 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,174 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,174 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,174 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,174 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,174 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,174 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,188 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,188 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,188 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,188 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,188 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,188 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,189 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,189 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,189 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,189 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,189 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,189 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,189 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,189 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,189 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,189 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,190 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,190 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,190 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,190 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,190 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,190 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,190 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,190 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,190 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,190 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,191 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,191 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,191 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,191 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,191 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,191 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,205 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,205 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,205 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,205 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,205 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,205 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,206 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_13941> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,206 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,206 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,206 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,206 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,206 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,206 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,206 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,215 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,215 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,215 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,215 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,216 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,216 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,216 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,216 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,216 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,216 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,216 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,216 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,216 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,217 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,217 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,217 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,217 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,232 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:32,232 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,232 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,232 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,233 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_13941> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 20:02:32,233 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_13941> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 183 Logical Axioms: 183]
2013-10-16 20:02:32,233 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 20:02:32,233 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 184 Logical Axioms: 184]
2013-10-16 20:02:32,233 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,233 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,240 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:32,240 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,240 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,240 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,241 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,241 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,241 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,241 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,241 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,241 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,241 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,241 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,241 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,241 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,242 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,247 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:32,248 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,248 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,248 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,248 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,248 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,249 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,249 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,249 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,263 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,263 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,263 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,263 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,263 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:32,263 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:32,264 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:32,264 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_13941-proto> is 47
2013-10-16 20:02:32,264 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_13941-proto> is 16
2013-10-16 20:02:32,265 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_28616>)
2013-10-16 20:02:32,265 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,265 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,265 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>)))
2013-10-16 20:02:32,265 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,265 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,265 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,266 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,266 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,266 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,266 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,266 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,266 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,266 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,267 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,267 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,267 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,267 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,267 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,267 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,267 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,267 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,268 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,268 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,268 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,268 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,268 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,268 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,282 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,283 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,283 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,283 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,283 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,283 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,283 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>)))
2013-10-16 20:02:32,283 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>)))
2013-10-16 20:02:32,283 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,283 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,284 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,284 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,284 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,284 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,284 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,284 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,284 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,284 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,285 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,285 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,285 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,285 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,285 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,285 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,285 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,286 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,286 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,286 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,286 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,286 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,286 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,286 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,301 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:32,302 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,302 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,302 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,302 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,302 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,302 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_28616> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_13941>)))
2013-10-16 20:02:32,302 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,302 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,302 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,303 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,303 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,303 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,303 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,316 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,316 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,316 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,316 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,316 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,316 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,316 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,316 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,317 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,317 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,317 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,317 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,317 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,317 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,318 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,318 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,318 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,334 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:32,334 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,334 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,334 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,335 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_28616> // src=<http://purl.obolibrary.org/obo/CHEBI_13941-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 20:02:32,335 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 185 Logical Axioms: 185]
2013-10-16 20:02:32,335 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 20:02:32,335 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,335 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,346 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 10 ms
2013-10-16 20:02:32,346 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,346 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,346 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,346 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,346 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,347 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,347 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,347 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,347 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,347 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,347 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,347 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,347 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,347 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,353 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:32,353 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,353 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,353 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,353 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,353 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,353 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,354 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,354 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,367 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,367 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,368 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,368 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,368 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,368 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,368 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,368 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,368 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,368 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,369 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,369 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,369 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,369 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,369 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,369 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,369 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,369 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,369 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,369 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,369 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,370 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,370 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,370 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,370 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,370 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,370 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,370 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,370 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,370 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,384 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,384 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,384 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,384 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,385 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,385 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,385 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,385 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,385 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,385 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,385 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,385 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,389 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 3 ms
2013-10-16 20:02:32,397 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,398 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,398 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,398 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,398 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,398 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,398 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,398 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,398 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,399 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,399 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,399 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,399 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,399 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,399 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,399 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,399 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,414 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,414 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,414 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,414 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,414 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_13941-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:32,415 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 20:02:32,415 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 186 Logical Axioms: 186]
2013-10-16 20:02:32,415 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:32,415 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,415 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,426 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 10 ms
2013-10-16 20:02:32,426 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,426 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,426 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,426 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,426 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,426 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,426 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,426 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,427 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,427 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,427 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,427 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,427 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,427 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,432 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:32,432 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,432 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,433 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,433 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,433 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,433 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,433 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,433 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,447 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,448 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,448 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,448 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,448 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,448 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,448 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,448 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,448 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,449 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,449 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,449 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,449 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,449 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,449 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,449 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,449 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,449 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,449 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,450 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,450 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,450 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,450 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,450 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,450 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,450 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,450 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,450 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,450 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,451 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,467 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:32,467 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,467 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,467 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,467 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,467 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,468 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,468 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,468 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,468 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,468 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,468 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,472 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 3 ms
2013-10-16 20:02:32,481 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,481 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,481 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,481 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,481 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,482 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,482 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,482 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,482 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,482 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,482 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,482 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,482 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,482 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,482 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,483 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,483 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,497 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,497 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,497 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,497 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,497 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_13941-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:32,497 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 20:02:32,498 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 188 Logical Axioms: 188]
2013-10-16 20:02:32,498 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 20:02:32,498 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,498 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,505 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:32,505 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,505 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,505 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,505 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,505 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,505 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,505 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,505 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,506 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,506 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,506 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,506 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,506 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,506 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,512 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:32,512 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,512 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,512 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,512 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,512 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,512 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,512 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,513 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,526 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,526 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,527 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,527 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,527 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,527 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,527 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,527 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,527 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,527 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,527 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,528 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,528 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,528 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,528 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,528 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,528 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,528 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,528 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,528 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,528 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,529 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,529 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,529 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,529 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,529 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,529 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,529 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,529 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,529 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,543 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,543 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,543 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,544 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,544 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,544 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,544 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,544 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,544 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,544 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,544 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,544 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,551 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:32,559 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,560 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,560 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,560 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,560 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,560 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,560 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,561 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,561 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,561 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,561 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,561 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,561 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,561 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,561 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,561 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,561 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,576 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,576 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,576 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,576 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,576 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_13941-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:32,576 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 20:02:32,576 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 190 Logical Axioms: 190]
2013-10-16 20:02:32,577 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 20:02:32,577 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,577 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,583 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:32,584 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,584 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,584 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,584 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,584 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,584 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,584 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,584 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,584 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,585 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,585 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,585 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,585 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,585 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,590 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:32,591 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,591 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,591 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,591 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,591 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,591 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,591 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,591 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,605 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,605 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,606 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,606 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,606 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,606 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,606 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,606 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,606 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,606 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,606 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,607 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,607 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,607 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,607 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,607 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,607 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,607 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,607 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,607 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,607 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,608 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,608 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,608 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,608 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,608 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,608 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,608 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,608 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,608 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,622 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,622 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,622 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,622 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,622 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,622 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,623 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,623 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,623 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,623 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,623 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,623 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,628 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:32,636 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,636 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,637 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,637 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,637 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,637 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,637 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,637 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,637 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,637 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,637 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,637 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,637 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,638 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,638 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,638 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,638 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,652 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,652 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,652 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,652 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,652 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_13941-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:32,652 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 20:02:32,653 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 192 Logical Axioms: 192]
2013-10-16 20:02:32,653 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 20:02:32,653 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,653 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,659 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:32,660 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,660 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,660 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,660 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,660 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,660 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,660 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,660 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,661 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,661 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,661 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,661 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,661 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,661 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,666 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:32,666 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,666 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,666 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,666 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,666 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,667 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,667 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,667 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,680 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,681 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,681 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,681 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,681 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,681 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,681 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,681 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,681 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,682 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,682 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,682 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,682 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,682 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,682 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,682 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,682 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,682 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,682 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,683 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,683 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,683 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,683 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,683 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,683 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,683 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,683 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,683 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,683 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,684 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,698 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,698 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,698 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,698 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,699 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,699 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,699 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,699 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,699 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,699 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,699 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,699 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,705 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:32,714 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,714 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,714 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,714 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,714 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,715 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,715 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,715 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,715 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,715 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,715 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,715 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,715 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,715 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,715 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,716 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,716 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,730 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,730 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,730 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,730 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,731 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:32,731 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:32,731 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 194 Logical Axioms: 194]
2013-10-16 20:02:32,731 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46629>)
2013-10-16 20:02:32,731 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,731 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,739 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:32,739 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,739 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,739 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,739 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,739 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,739 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,739 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,740 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,740 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,740 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,740 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,740 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,740 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,740 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,746 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:32,746 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,746 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,747 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,747 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,747 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,747 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,747 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,747 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,761 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,761 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,761 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,761 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,762 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,762 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,762 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,762 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,762 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,762 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,762 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,762 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,762 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,763 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,763 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,763 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,763 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,763 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,763 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,763 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,763 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,763 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,763 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,763 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,764 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,764 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,764 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,764 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,764 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,764 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,778 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,778 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,778 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,778 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,778 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,778 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,778 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,779 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,779 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,779 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,779 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,779 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,784 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:32,793 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,793 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,793 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,793 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,794 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,794 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,794 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,794 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,794 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,794 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,794 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,794 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,794 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,795 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,795 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,795 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,795 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,809 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,809 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,809 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,809 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,809 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46629> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:32,809 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:32,810 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 196 Logical Axioms: 196]
2013-10-16 20:02:32,810 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23019>)
2013-10-16 20:02:32,810 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,810 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,817 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:32,817 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,817 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,817 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,817 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,817 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,817 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,818 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,818 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,818 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,818 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,818 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,818 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,818 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,818 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,824 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:32,824 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,824 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,824 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,824 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,824 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,824 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,824 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,825 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,838 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,838 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,838 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,838 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,839 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,839 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,839 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,839 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,839 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,839 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,839 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,839 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,840 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,840 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,840 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,840 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,840 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,840 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,840 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,840 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,841 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,841 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,841 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,841 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,841 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,841 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,841 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,841 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,841 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,841 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,855 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,856 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,856 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,856 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,856 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,856 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,856 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,856 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,856 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,856 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,856 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,857 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,862 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:32,871 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,871 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,871 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,871 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,871 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,871 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,872 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,872 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,872 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,872 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,872 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,872 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,872 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,872 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,872 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,873 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,873 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,887 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:32,887 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,888 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,888 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,888 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_23019> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:32,888 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:32,888 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 198 Logical Axioms: 198]
2013-10-16 20:02:32,888 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:32,888 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,888 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,895 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:32,895 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,895 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,895 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,895 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,896 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,896 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,896 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,896 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,896 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,896 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,896 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,896 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,896 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,896 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,901 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:32,901 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,901 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,901 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,901 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,901 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,901 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,902 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,902 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,915 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,915 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,915 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,916 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,916 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,916 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,916 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,916 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,916 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,916 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,916 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,917 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,917 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,917 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,917 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,917 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,917 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,917 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,917 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,917 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,917 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,918 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,918 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,918 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,918 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,918 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,918 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,918 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,918 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,918 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,932 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,932 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,932 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,932 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,932 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,932 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,932 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,933 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,933 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,933 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,933 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,933 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,937 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:32,946 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,946 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,947 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,947 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,947 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,947 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,947 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,947 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,947 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,947 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,947 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,948 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,948 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,948 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,948 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,948 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,948 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,962 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,962 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,962 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,962 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,962 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:32,962 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:32,963 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 200 Logical Axioms: 200]
2013-10-16 20:02:32,963 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_39141>)
2013-10-16 20:02:32,963 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,963 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,969 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,969 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:32,969 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,970 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,970 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,970 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,970 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,970 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,970 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,970 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,970 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,971 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,971 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,971 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,971 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,971 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,971 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,971 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,971 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,971 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,971 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,971 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,972 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,972 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,972 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:32,986 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:32,986 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:32,986 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:32,986 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:32,986 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:32,986 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:32,986 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,986 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:32,987 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:32,987 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:32,987 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:32,987 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:32,987 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:32,987 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:32,987 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:32,987 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:32,987 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:32,987 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:32,988 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:32,988 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:32,988 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:32,988 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:32,988 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:32,988 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:32,988 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:32,988 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:32,988 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:32,988 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:32,988 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:32,989 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:32,989 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:32,989 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,002 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,003 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,003 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,003 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,003 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,003 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,003 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_28616>)))
2013-10-16 20:02:33,003 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,003 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,004 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,004 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,004 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,004 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,004 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,013 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,013 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,013 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,013 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,013 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,013 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,013 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,013 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,014 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,014 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,014 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,014 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,014 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,014 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,014 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,014 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,014 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,028 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,028 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,028 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,029 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,029 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_39141> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 20:02:33,029 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_39141-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 202 Logical Axioms: 202]
2013-10-16 20:02:33,029 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 20:02:33,029 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,029 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,036 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:33,036 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,036 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,036 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,036 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,036 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,036 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,036 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,037 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,037 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,037 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,037 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,037 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,037 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,037 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,041 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:33,041 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,041 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,042 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,042 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,042 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,042 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,042 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,042 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,058 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:33,058 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,058 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,058 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,058 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,058 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,059 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,059 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,059 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,059 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,059 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,059 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,059 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,059 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,059 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,059 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,059 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,060 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,060 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,060 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,060 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,060 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,060 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,060 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,060 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,060 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,060 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,060 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,061 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,061 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,075 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,075 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,075 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,076 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,076 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,076 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,076 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,076 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,076 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,076 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,076 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,076 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,082 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:33,091 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,091 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,091 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,091 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,091 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,091 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,091 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,092 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,092 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,092 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,092 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,092 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,092 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,092 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,092 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,092 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,092 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,106 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,106 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,106 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,107 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,107 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:33,107 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:33,107 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 203 Logical Axioms: 203]
2013-10-16 20:02:33,107 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 20:02:33,107 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,107 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,114 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:33,114 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,114 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,114 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,114 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,114 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,115 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,115 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,115 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,115 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,115 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,115 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,115 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,115 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,115 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,120 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:33,120 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,120 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,121 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,121 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,121 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,121 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,121 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,121 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,135 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,135 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,135 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,135 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,135 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,135 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,136 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,136 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,136 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,136 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,136 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,136 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,136 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,136 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,136 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,136 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,137 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,137 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,137 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,137 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,137 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,137 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,137 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,137 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,137 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,137 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,137 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,138 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,138 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,138 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,151 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,151 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,152 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,152 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,152 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,152 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,152 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,152 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,152 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,152 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,152 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,153 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,159 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:33,168 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,168 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,168 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,168 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,168 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,168 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,168 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,168 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,169 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,169 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,169 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,169 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,169 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,169 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,169 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,169 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,169 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,183 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,183 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,184 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,184 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,184 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_28616-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:33,184 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:33,184 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 205 Logical Axioms: 205]
2013-10-16 20:02:33,184 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 20:02:33,184 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,185 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,192 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:33,192 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,192 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,192 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,192 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,192 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,193 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,193 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,193 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,193 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,193 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,193 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,193 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,193 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,193 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,198 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:33,199 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,199 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,199 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,199 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,199 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,199 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,199 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,199 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,213 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,213 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,213 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,214 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,214 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,214 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,214 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,214 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,214 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,214 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,214 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,215 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,215 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,215 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,215 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,215 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,215 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,215 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,215 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,215 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,215 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,216 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,216 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,216 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,216 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,216 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,216 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,216 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,216 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,216 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,230 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,230 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,230 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,230 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,230 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,230 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,231 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,231 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,231 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,231 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,231 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,231 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,236 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:33,245 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,245 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,245 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,245 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,245 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,245 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,245 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,246 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,246 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,246 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,246 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,246 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,246 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,246 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,246 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,246 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,246 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,261 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,261 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,261 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,261 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,261 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_16670-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:33,261 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 20:02:33,261 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_16670-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16670-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 207 Logical Axioms: 207]
2013-10-16 20:02:33,261 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33700>)
2013-10-16 20:02:33,262 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,262 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,268 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:33,268 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,268 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,269 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,269 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,269 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,269 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,269 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,269 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,269 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,269 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,269 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,269 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,270 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,270 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,275 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:33,275 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,275 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,275 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,275 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,275 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,276 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,276 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,276 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,291 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,291 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,291 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,291 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,291 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,291 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,291 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,291 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,291 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,292 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,292 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,292 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,292 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,292 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,292 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,292 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,292 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,292 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,292 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,293 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,293 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,293 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,293 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,293 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,293 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,293 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,293 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,293 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,293 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,293 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,307 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,307 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,307 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,308 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,308 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,308 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,308 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,308 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,308 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,308 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,308 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,308 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,313 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:33,324 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,324 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,324 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,325 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,325 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,325 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,325 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,325 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,325 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,325 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,325 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,325 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,326 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,326 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,326 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,326 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,326 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,342 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 16 ms
2013-10-16 20:02:33,343 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,343 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,343 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,343 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33700> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:33,343 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33700> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 209 Logical Axioms: 209]
2013-10-16 20:02:33,344 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 20:02:33,344 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:33,344 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 210 Logical Axioms: 210]
2013-10-16 20:02:33,344 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,344 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,352 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 20:02:33,353 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,353 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,353 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,353 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,353 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,353 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,353 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,353 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,353 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,354 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,354 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,354 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,354 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,354 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,362 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 8 ms
2013-10-16 20:02:33,362 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,363 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,363 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,363 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,363 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,363 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,364 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,364 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,377 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,377 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,377 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,378 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,378 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:33,378 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:33,378 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:33,378 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33700-proto> is 15
2013-10-16 20:02:33,378 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33700-proto> is 8
2013-10-16 20:02:33,379 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33704>)
2013-10-16 20:02:33,379 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,379 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,379 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>)))
2013-10-16 20:02:33,379 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,379 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,379 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,379 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,379 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,379 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,379 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,380 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,380 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,380 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,380 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,380 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,380 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,380 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,380 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,380 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,381 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,381 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,381 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,381 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,381 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,381 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,381 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,381 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,395 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,395 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,395 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,395 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,396 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,396 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,396 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>)))
2013-10-16 20:02:33,396 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>)))
2013-10-16 20:02:33,396 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,396 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,396 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,396 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,396 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,396 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,396 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,397 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,397 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,397 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,397 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,397 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,397 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,397 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,397 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,397 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,397 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,398 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,398 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,398 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,398 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,398 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,398 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,398 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,412 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,412 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,412 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,412 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,412 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,412 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,412 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>) <http://purl.obolibrary.org/obo/CHEBI_33700>)))
2013-10-16 20:02:33,412 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,413 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,413 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,413 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,413 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,413 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,413 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,422 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,422 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,422 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,422 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,422 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,423 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,423 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,423 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,423 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,423 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,423 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,423 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,423 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,424 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,424 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,424 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,424 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,438 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,438 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,438 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,438 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,438 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33704> // src=<http://purl.obolibrary.org/obo/CHEBI_33700-proto> via <http://purl.obolibrary.org/obo/chebi#is_substituent_group_from>
2013-10-16 20:02:33,438 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33704> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 212 Logical Axioms: 212]
2013-10-16 20:02:33,439 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:33,439 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 213 Logical Axioms: 213]
2013-10-16 20:02:33,439 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,439 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,445 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:33,446 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,446 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,446 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,446 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,446 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,446 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,446 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,446 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,446 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,447 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,447 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,447 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,447 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,447 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,451 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:33,452 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,452 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,452 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,452 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,452 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,452 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,453 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,453 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,466 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,466 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,466 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,467 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,467 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:33,467 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:33,467 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:33,467 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33704-proto> is 61
2013-10-16 20:02:33,468 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33704-proto> is 25
2013-10-16 20:02:33,468 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_33558>)
2013-10-16 20:02:33,469 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,469 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,469 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:33,469 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,469 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,469 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,469 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,469 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,469 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,469 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,470 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,470 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,470 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,470 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,470 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,470 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,470 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,470 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,470 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,471 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,471 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,471 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,471 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,471 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,471 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,471 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,471 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,485 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,485 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,485 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,485 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,485 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,485 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,485 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:33,486 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:33,486 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,486 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,486 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,486 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,486 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,486 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,486 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,486 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,486 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,487 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,487 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,487 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,487 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,487 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,487 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,487 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,487 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,487 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,487 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,488 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,488 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,488 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,488 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,488 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,502 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,502 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,502 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,503 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,503 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,503 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,503 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33558> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:33,503 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,503 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,503 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,503 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,503 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,503 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,503 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,512 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,513 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,513 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,513 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,513 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,513 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,513 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,513 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,514 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,514 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,514 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,514 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,514 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,514 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,514 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,514 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,514 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,529 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,529 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,529 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,529 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,529 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33558> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of>
2013-10-16 20:02:33,529 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33558> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 214 Logical Axioms: 214]
2013-10-16 20:02:33,529 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 20:02:33,530 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 215 Logical Axioms: 215]
2013-10-16 20:02:33,530 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,530 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,537 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:33,537 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,537 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,537 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,537 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,537 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,537 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,537 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,538 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,538 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,538 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,538 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,538 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,538 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,538 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,542 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:33,542 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,542 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,543 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,543 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,543 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,543 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,543 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,543 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,557 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,557 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,557 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,557 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,558 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:33,558 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:33,558 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:33,558 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/CHEBI_33558-proto> is 47
2013-10-16 20:02:33,558 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/CHEBI_33558-proto> is 16
2013-10-16 20:02:33,559 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_33704>)
2013-10-16 20:02:33,559 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,559 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,559 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>)))
2013-10-16 20:02:33,559 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,559 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,559 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,560 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,560 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,560 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,560 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,560 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,560 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,560 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,560 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,560 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,561 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,561 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,561 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,561 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,561 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,561 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,561 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,561 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,561 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,561 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,562 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,562 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,575 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,576 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,576 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,576 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,576 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,576 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,576 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>)))
2013-10-16 20:02:33,576 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>)))
2013-10-16 20:02:33,576 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,576 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,576 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,577 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,577 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,577 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,577 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,577 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,577 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,577 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,577 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,577 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,578 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,578 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,578 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,578 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,578 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,578 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,578 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,578 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,578 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,579 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,579 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,579 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,592 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,593 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,593 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,593 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,593 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,593 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,593 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33704> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>) <http://purl.obolibrary.org/obo/CHEBI_33558>)))
2013-10-16 20:02:33,593 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,593 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,593 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,593 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,593 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,594 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,594 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,602 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,602 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,602 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,602 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,602 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,603 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,603 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,603 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,603 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,603 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,603 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,603 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,603 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,603 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,603 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,603 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,604 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,618 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,618 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,618 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,618 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,618 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33704> // src=<http://purl.obolibrary.org/obo/CHEBI_33558-proto> via <http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of>
2013-10-16 20:02:33,618 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 216 Logical Axioms: 216]
2013-10-16 20:02:33,618 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 20:02:33,618 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,618 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,625 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:33,625 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,625 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,625 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,625 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,626 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,626 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,626 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,626 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,626 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,626 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,626 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,626 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,626 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,626 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,631 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:33,631 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,632 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,632 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,632 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,632 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,632 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,632 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,632 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,646 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,646 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,647 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,647 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,647 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,647 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,647 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,647 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,647 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,647 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,648 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,648 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,648 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,648 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,648 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,648 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,648 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,648 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,648 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,648 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,649 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,649 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,649 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,649 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,649 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,649 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,649 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,649 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,649 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,649 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,663 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,664 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,664 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,664 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,664 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,664 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,664 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,664 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,664 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,664 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,664 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,665 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,669 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:33,678 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,678 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,678 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,678 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,678 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,678 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,679 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,679 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,679 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,679 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,679 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,679 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,679 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,679 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,679 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,679 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,680 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,693 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,694 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,694 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,694 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,694 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_33558-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:33,694 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 20:02:33,694 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 217 Logical Axioms: 217]
2013-10-16 20:02:33,694 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:33,694 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,694 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,701 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:33,701 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,701 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,701 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,701 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,702 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,702 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,702 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,702 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,702 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,702 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,702 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,702 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,702 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,702 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,707 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:33,707 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,707 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,707 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,707 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,707 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,707 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,708 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,708 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,721 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,721 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,722 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,722 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,722 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,722 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,722 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,722 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,722 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,722 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,723 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,723 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,723 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,723 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,723 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,723 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,723 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,723 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,723 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,723 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,724 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,724 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,724 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,724 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,724 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,724 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,724 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,724 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,724 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,725 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,739 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,739 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,739 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,739 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,739 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,740 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,740 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,740 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,740 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,740 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,740 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,740 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,748 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 7 ms
2013-10-16 20:02:33,757 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,757 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,757 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,758 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,758 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,758 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,758 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,758 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,758 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,758 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,758 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,758 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,758 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,759 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,759 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,759 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,759 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,774 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,774 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,774 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,774 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,774 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_33558-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:33,774 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 20:02:33,774 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 219 Logical Axioms: 219]
2013-10-16 20:02:33,774 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433>)
2013-10-16 20:02:33,775 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,775 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,781 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:33,781 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,781 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,782 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,782 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,782 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,782 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,782 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,782 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,782 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,782 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,782 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,782 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,782 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,783 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,788 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:33,788 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,788 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,788 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,788 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,788 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,788 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,788 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,789 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,803 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,803 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,803 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,803 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,803 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,803 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,803 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,803 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,804 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,804 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,804 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,804 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,804 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,804 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,804 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,804 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,804 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,804 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,805 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,805 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,805 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,805 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,805 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,805 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,805 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,805 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,805 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,805 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,805 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,806 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,820 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,820 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,820 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,820 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,821 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,821 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,821 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,821 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,821 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,821 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,821 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,821 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,825 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:33,834 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,834 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,834 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,835 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,835 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,835 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,835 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,835 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,835 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,835 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,835 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,835 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,835 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,835 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,836 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,836 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,836 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,850 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,850 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,850 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,850 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,850 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_24433> // src=<http://purl.obolibrary.org/obo/CHEBI_33558-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:33,850 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 20:02:33,850 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 221 Logical Axioms: 221]
2013-10-16 20:02:33,851 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 20:02:33,851 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,851 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,859 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 20:02:33,860 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,860 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,860 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,860 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,860 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,860 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,860 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,860 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,861 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,861 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,861 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,861 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,861 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,861 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,865 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:33,865 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,866 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,866 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,866 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,866 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,866 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,866 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,866 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,880 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,880 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,880 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,880 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,880 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,880 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,881 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,881 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,881 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,881 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,881 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,881 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,881 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,881 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,881 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,881 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,882 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,882 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,882 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,882 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,882 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,882 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,882 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,882 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,883 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,883 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,883 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,883 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,883 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,883 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,897 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:33,898 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,898 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,898 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,898 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,898 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,898 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,898 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,898 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,898 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,898 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,899 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,904 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:33,913 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,913 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,914 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,914 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,914 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,914 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,914 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,914 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,914 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,914 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,915 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,915 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,915 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,915 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,915 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,915 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,915 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,931 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:33,931 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,931 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,931 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,931 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_33558-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:33,931 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 20:02:33,931 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 223 Logical Axioms: 223]
2013-10-16 20:02:33,931 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_43176>)
2013-10-16 20:02:33,932 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,932 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,938 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:33,938 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,938 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,939 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,939 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,939 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,939 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,939 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,939 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,939 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,939 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,939 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,939 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,940 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,940 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,945 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:33,945 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,945 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,945 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,945 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,945 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,945 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,945 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,946 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,959 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:33,960 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,960 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,960 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,960 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,960 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,960 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,960 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,960 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,961 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,961 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,961 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,961 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:33,961 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,961 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,961 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,961 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,961 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,962 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,962 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,962 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,962 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,962 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,962 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,962 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,962 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,962 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,962 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,962 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,963 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:33,978 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:33,978 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:33,978 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:33,978 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:33,978 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:33,978 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:33,978 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:33,978 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:33,978 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:33,979 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:33,979 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:33,979 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:33,983 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:33,992 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:33,992 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:33,992 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:33,992 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:33,992 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:33,993 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:33,993 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:33,993 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:33,993 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:33,993 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:33,993 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:33,993 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:33,993 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:33,993 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:33,993 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:33,993 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:33,994 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,007 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,008 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,008 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,008 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,008 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_43176> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,008 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:34,008 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 225 Logical Axioms: 225]
2013-10-16 20:02:34,008 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46883>)
2013-10-16 20:02:34,009 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,009 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,026 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 17 ms
2013-10-16 20:02:34,027 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,027 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,027 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,027 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,027 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,027 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,027 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,027 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,028 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,028 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,028 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,028 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,028 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,028 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,033 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:34,033 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,033 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,033 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,033 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,034 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,034 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,034 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,034 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,047 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,048 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,048 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,048 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,048 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,048 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,048 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,048 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,048 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,049 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,049 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,049 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,049 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,049 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,049 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,049 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,049 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,049 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,049 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,049 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,050 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,050 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,050 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,050 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,050 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,050 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,050 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,050 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,050 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,050 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,065 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:34,065 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,065 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,065 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,065 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,065 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,065 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,065 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,066 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,066 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,066 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,066 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,071 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:34,079 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,079 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,080 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,080 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,080 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,080 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,080 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,080 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,080 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,080 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,080 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,080 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,081 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,081 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,081 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,081 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,081 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,095 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,095 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,095 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,095 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,095 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46883> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,096 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:34,096 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 227 Logical Axioms: 227]
2013-10-16 20:02:34,096 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 20:02:34,096 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,096 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,103 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:34,103 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,103 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,103 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,103 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,103 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,103 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,103 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,103 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,104 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,104 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,104 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,104 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,104 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,104 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,104 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,104 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,104 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,104 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,104 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,105 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,105 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,105 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,105 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,105 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,119 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,119 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,119 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,119 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,119 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,119 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,119 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:34,120 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:34,120 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,120 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,120 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,120 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,120 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,120 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,120 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,120 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,120 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,121 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,121 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,121 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,121 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,121 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,121 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,121 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,121 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,121 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,121 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,121 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,122 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,122 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,122 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,122 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,136 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,136 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,136 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,136 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,136 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,136 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,136 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:34,136 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,136 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,136 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,137 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,137 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,137 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,137 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,145 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,146 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,146 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,146 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,146 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,146 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,146 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,146 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,146 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,147 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,147 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,147 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,147 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,147 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,147 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,147 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,147 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,163 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:34,163 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,163 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,163 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,163 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/chebi#has_parent_hydride>
2013-10-16 20:02:34,163 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 229 Logical Axioms: 229]
2013-10-16 20:02:34,163 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 20:02:34,164 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,164 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,172 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 8 ms
2013-10-16 20:02:34,173 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,173 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,173 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,173 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,173 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,173 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,173 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,173 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,174 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,174 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,174 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,174 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,174 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,174 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,179 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:34,179 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,179 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,179 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,180 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,180 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,180 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,180 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,180 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,194 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:34,195 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,195 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,195 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,195 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,195 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,195 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,195 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,195 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,195 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,196 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,196 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,196 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,196 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,196 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,196 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,196 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,196 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,196 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,196 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,196 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,197 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,197 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,197 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,197 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,197 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,197 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,197 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,197 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,197 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,211 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,211 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,211 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,211 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,211 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,211 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,212 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,212 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,212 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,212 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,212 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,212 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,216 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 3 ms
2013-10-16 20:02:34,224 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,225 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,225 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,225 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,225 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,225 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,225 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,225 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,225 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,226 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,226 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,226 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,226 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,226 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,226 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,226 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,226 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,240 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,240 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,240 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,240 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,241 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,241 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:34,241 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 230 Logical Axioms: 230]
2013-10-16 20:02:34,241 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46629>)
2013-10-16 20:02:34,241 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,241 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,247 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,248 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,248 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,248 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,248 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,248 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,248 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,248 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,248 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,248 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,248 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,249 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,249 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,249 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,249 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,253 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:34,254 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,254 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,254 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,254 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,254 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,254 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,254 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,254 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,269 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:34,269 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,269 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,269 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,269 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,269 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,269 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,270 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,270 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,270 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,270 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,270 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,270 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,270 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,270 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,270 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,270 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,270 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,271 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,271 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,271 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,271 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,271 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,271 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,271 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,271 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,271 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,271 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,271 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,271 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,286 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:34,286 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,286 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,286 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,286 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,286 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,286 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,286 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,287 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,287 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,287 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,287 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,292 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:34,300 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,300 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,301 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,301 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,301 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,301 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,301 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,301 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,301 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,301 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,301 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,301 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,302 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,302 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,302 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,302 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,302 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,316 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,316 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,316 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,316 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,316 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_46629> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,316 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:34,317 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 232 Logical Axioms: 232]
2013-10-16 20:02:34,317 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23019>)
2013-10-16 20:02:34,317 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,317 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,323 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,324 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,324 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,324 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,324 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,324 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,324 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,324 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,324 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,324 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,324 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,324 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,325 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,325 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,325 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,330 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:34,330 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,330 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,331 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,331 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,331 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,331 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,331 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,331 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,347 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:34,347 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,347 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,347 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,348 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,348 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,348 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,348 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,348 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,348 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,348 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,348 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,348 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,349 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,349 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,349 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,349 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,349 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,349 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,349 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,349 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,349 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,349 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,349 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,350 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,350 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,350 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,350 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,350 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,350 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,364 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,364 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,364 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,364 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,364 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,364 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,365 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,365 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,365 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,365 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,365 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,365 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,370 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:34,378 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,378 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,379 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,379 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,379 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,379 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,379 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,379 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,379 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,379 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,380 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,380 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,380 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,380 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,380 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,380 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,380 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,394 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,394 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,394 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,394 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,395 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_23019> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,395 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:34,395 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 234 Logical Axioms: 234]
2013-10-16 20:02:34,395 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:34,395 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,395 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,402 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,402 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,402 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,402 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,403 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,403 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,403 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,403 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,403 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,403 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,403 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,403 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,403 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,403 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,403 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,408 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:34,408 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,408 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,408 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,408 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,408 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,408 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,408 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,408 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,422 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,422 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,422 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,423 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,423 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,423 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,423 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,423 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,423 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,423 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,423 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,424 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,424 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,424 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,424 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,424 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,424 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,424 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,424 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,424 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,424 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,424 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,425 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,425 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,425 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,425 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,425 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,425 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,425 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,425 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,439 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,439 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,439 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,439 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,439 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,439 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,439 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,439 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,440 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,440 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,440 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,440 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,444 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 3 ms
2013-10-16 20:02:34,452 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,452 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,452 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,452 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,452 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,453 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,453 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,453 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,453 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,453 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,453 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,453 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,453 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,453 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,453 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,454 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,454 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,467 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,468 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,468 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,468 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,468 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,468 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:34,468 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 236 Logical Axioms: 236]
2013-10-16 20:02:34,468 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_39141>)
2013-10-16 20:02:34,468 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,469 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,475 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:34,475 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,475 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,475 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,476 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,476 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,476 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,476 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,476 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,476 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,476 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,476 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,476 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,476 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,477 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,477 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,477 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,477 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,477 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,477 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,477 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,477 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,477 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,477 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,477 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,492 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:34,492 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,492 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,492 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,492 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,492 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,493 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:34,493 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:34,493 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,493 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,493 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,493 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,493 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,493 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,493 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,493 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,493 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,494 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,494 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,494 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,494 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,494 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,494 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,494 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,494 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,494 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,494 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,494 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,495 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,495 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,495 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,495 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,508 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,509 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,509 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,509 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,509 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,509 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,509 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_39141> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_role>) <http://purl.obolibrary.org/obo/CHEBI_33704>)))
2013-10-16 20:02:34,509 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,509 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,509 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,509 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,510 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,510 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,510 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,518 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,518 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,518 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,518 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,518 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,518 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,518 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,518 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,519 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,519 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,519 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,519 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,519 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,519 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,519 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,519 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,519 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,533 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,533 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,533 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,534 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,534 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_39141> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/chebi#has_role>
2013-10-16 20:02:34,534 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_39141-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 238 Logical Axioms: 238]
2013-10-16 20:02:34,534 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637>)
2013-10-16 20:02:34,534 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,534 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,541 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,541 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,541 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,541 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,541 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,541 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,541 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,541 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,542 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,542 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,542 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,542 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,542 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,542 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,542 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,546 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 3 ms
2013-10-16 20:02:34,546 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,546 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,546 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,546 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,546 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,547 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,547 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,547 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,561 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,561 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,561 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,561 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,561 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,561 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,561 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,562 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,562 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,562 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,562 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,562 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,562 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,562 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,562 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,562 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,562 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,562 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,563 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,563 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,563 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,563 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,563 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,563 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,563 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,563 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,563 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,563 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,563 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,564 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,579 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:34,579 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,580 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,580 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,580 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,580 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,580 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,580 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,580 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,580 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,580 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,580 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,584 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 3 ms
2013-10-16 20:02:34,593 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,593 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,593 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,593 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,593 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,594 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,594 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,594 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,594 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,594 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,594 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,594 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,594 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,594 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,594 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,594 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,595 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,608 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,609 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,609 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,609 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,609 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_49637> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,609 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:34,609 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 239 Logical Axioms: 239]
2013-10-16 20:02:34,609 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 20:02:34,610 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,610 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,616 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,616 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,616 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,617 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,617 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,617 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,617 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,617 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,617 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,617 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,617 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,617 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,617 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,617 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,618 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,623 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:34,623 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,623 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,624 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,624 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,624 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,624 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,624 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,624 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,638 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,638 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,638 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,638 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,638 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,638 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,639 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,639 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,639 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,639 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,639 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,639 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,639 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,639 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,639 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,640 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,640 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,640 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,640 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,640 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,640 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,640 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,640 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,640 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,640 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,640 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,641 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,641 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,641 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,641 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,659 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 17 ms
2013-10-16 20:02:34,659 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,659 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,659 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,659 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,659 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,659 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,660 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,660 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,660 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,660 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,660 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,665 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:34,674 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,674 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,675 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,675 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,675 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,675 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,675 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,675 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,675 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,675 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,675 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,675 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,676 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,676 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,676 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,676 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,676 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,690 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,690 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,690 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,690 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,690 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_33704-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,690 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:34,691 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 241 Logical Axioms: 241]
2013-10-16 20:02:34,691 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250>)
2013-10-16 20:02:34,691 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,691 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,697 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,698 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,698 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,698 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,698 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,698 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,698 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,698 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,698 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,698 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,698 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,698 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,699 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,699 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,699 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,703 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:34,703 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,703 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,704 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,704 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,704 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,704 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,704 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,704 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,719 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:34,719 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,719 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,719 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,719 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,719 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,720 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,720 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,720 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,720 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,720 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,720 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,720 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,720 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,720 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,720 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,721 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,721 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,721 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,721 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,721 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,721 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,721 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,721 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,721 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,721 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,721 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,722 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,722 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,722 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,736 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:34,736 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,736 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,736 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,736 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,736 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,736 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,737 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,737 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,737 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,737 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,737 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,742 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:34,750 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,750 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,750 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,751 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,751 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,751 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,751 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,751 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,751 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,751 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,751 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,751 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,752 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,752 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,752 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,752 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,752 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,766 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:34,766 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,766 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,766 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,767 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_33250> // src=<http://purl.obolibrary.org/obo/CHEBI_33700-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,767 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 20:02:34,767 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 243 Logical Axioms: 243]
2013-10-16 20:02:34,767 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16134>)
2013-10-16 20:02:34,767 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,767 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,774 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:34,774 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,774 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,774 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,774 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,774 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,774 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,775 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,775 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,775 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,775 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,775 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,775 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,775 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,775 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,775 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,775 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,775 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,776 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,776 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,776 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,776 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,776 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,776 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,776 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,790 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,790 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,790 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,790 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,790 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,790 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,791 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:34,791 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:34,791 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,791 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,791 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,791 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,791 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,791 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,791 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,791 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,791 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,792 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,792 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,792 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,792 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,792 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,792 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,792 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,792 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,792 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,792 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,792 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,793 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,793 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,793 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,793 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,807 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,807 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,807 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,807 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,807 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,807 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,807 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16134> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:34,807 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,807 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,808 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,808 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,808 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,808 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,808 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,817 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,817 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,817 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,817 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,817 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,817 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,817 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,817 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,818 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,818 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,818 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,818 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,818 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,818 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,818 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,818 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,818 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,833 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:34,833 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,833 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,833 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,833 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_16134> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/chebi#has_parent_hydride>
2013-10-16 20:02:34,833 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 245 Logical Axioms: 245]
2013-10-16 20:02:34,834 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805>)
2013-10-16 20:02:34,834 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,834 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,842 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:34,842 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,842 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,842 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,842 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,842 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,842 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,842 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,843 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,843 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,843 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,843 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,843 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,843 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,843 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,847 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:34,847 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,847 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,848 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,848 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,848 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,848 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,848 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,848 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,862 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,862 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,862 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,862 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,862 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,862 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,863 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,863 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,863 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,863 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,863 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,863 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,863 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,863 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,863 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,864 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,864 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,864 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,864 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,864 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,864 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,864 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,864 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,864 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,864 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,864 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,864 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,865 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,865 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,865 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,878 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,879 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,879 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,879 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,879 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,879 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,879 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,879 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,879 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,879 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,879 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,880 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,884 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:34,893 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,893 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,893 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,893 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,893 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,894 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,894 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,894 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,894 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,894 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,894 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,894 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,894 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,894 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,894 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,894 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,894 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,908 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,909 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,909 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,909 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,909 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25805> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,909 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:34,909 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 246 Logical Axioms: 246]
2013-10-16 20:02:34,909 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555>)
2013-10-16 20:02:34,909 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,909 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,916 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,916 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,916 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,916 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,916 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,917 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,917 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,917 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,917 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,917 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,917 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,917 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,917 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,917 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,917 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,923 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 20:02:34,924 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,924 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,924 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,924 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,924 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,924 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,924 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,924 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,938 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,938 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,938 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,938 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,938 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,938 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,939 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,939 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,939 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,939 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,939 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,939 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,939 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,939 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,939 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,940 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,940 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,940 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,940 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,940 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,940 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,940 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,940 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,940 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,940 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,940 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,940 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,941 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,941 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,941 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,954 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:34,955 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,955 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,955 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,955 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,955 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,955 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:34,955 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,955 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,955 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,955 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,956 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,960 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:34,968 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,968 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,969 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,969 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,969 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,969 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,969 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,969 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,969 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,970 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,970 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,970 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,970 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,970 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,970 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,970 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,970 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:34,984 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:34,984 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:34,985 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:34,985 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:34,985 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_25555> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:34,985 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:34,985 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 248 Logical Axioms: 248]
2013-10-16 20:02:34,985 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_60466>)
2013-10-16 20:02:34,985 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:34,985 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:34,992 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:34,992 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:34,992 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:34,992 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:34,992 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:34,992 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:34,993 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:34,993 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:34,993 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:34,993 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:34,993 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:34,993 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:34,993 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:34,993 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:34,993 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:34,993 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:34,994 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:34,994 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:34,994 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:34,994 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:34,994 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:34,994 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:34,994 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:34,994 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:34,994 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,008 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,008 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,008 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,008 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,009 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,009 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,009 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:35,009 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:35,009 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,009 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,009 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,009 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,009 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,009 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,009 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,010 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,010 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,010 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,010 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,010 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,010 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,010 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,010 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,010 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,010 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,010 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,011 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,011 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,011 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,011 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,011 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,011 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,025 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,025 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,025 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,025 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,025 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,025 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,025 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_60466> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of>) <http://purl.obolibrary.org/obo/CHEBI_16541>)))
2013-10-16 20:02:35,025 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,025 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,025 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,026 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,026 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,026 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,026 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,034 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,034 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,035 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,035 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,035 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,035 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,035 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,035 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,035 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,035 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,035 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,035 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,035 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,035 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,036 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,036 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,036 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,050 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,050 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,050 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,050 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,050 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_60466> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/chebi#is_tautomer_of>
2013-10-16 20:02:35,050 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_tautomer_of> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 250 Logical Axioms: 250]
2013-10-16 20:02:35,050 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23004>)
2013-10-16 20:02:35,051 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,051 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,057 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:35,057 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,057 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,058 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,058 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,058 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,058 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,058 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,058 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,058 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,058 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,058 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,058 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,059 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,059 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,064 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:35,064 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,064 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,065 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,065 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,065 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,065 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,065 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,065 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,079 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,079 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,079 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,079 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,080 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,080 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,080 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,080 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,080 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,080 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,080 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,080 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,080 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,080 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,081 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,081 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,081 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,081 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,081 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,081 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,081 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,081 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,081 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,081 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,081 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,082 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,082 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,082 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,082 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,082 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,096 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:35,096 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,096 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,096 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,096 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,097 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,097 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,097 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,097 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,097 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,097 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,097 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,101 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:35,109 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,110 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,110 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,110 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,110 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,110 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,110 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,110 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,111 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,111 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,111 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,111 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,111 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,111 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,111 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,111 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,111 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,125 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,125 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,125 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,125 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,125 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_23004> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:35,126 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:35,126 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 251 Logical Axioms: 251]
2013-10-16 20:02:35,126 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594>)
2013-10-16 20:02:35,126 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,126 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,132 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:35,133 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,133 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,133 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,133 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,133 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,133 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,133 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,133 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,133 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,133 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,134 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,134 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,134 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,134 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,139 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:35,139 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,139 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,140 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,140 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,140 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,140 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,140 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,140 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,154 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,154 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,154 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,154 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,154 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,154 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,155 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,155 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,155 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,155 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,155 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,155 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,155 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,155 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,156 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,156 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,156 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,156 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,156 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,156 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,156 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,156 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,156 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,156 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,156 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,157 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,157 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,157 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,157 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,157 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,171 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,171 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,171 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,171 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,171 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,171 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,171 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,171 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,172 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,172 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,172 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,172 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,176 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:35,185 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,185 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,185 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,185 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,185 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,185 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,185 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,186 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,186 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,186 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,186 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,186 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,186 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,186 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,186 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,186 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,186 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,200 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,200 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,200 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,201 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,201 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_27594> // src=<http://purl.obolibrary.org/obo/CHEBI_16541-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:35,201 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:35,201 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 253 Logical Axioms: 253]
2013-10-16 20:02:35,201 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)))
2013-10-16 20:02:35,201 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,201 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,208 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:35,208 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,208 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,208 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,208 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,208 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,208 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,208 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,208 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,208 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,209 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,209 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,209 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,209 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,209 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,213 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,213 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,213 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,214 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,214 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,214 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,214 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,214 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,214 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,228 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,228 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,228 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,228 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,228 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,229 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,229 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,229 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,229 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,229 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,229 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,229 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,229 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,230 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,230 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,230 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,230 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,230 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,230 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,230 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,230 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,230 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,230 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,230 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,230 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,231 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,231 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,231 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,231 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,231 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,245 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,245 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,245 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,245 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,245 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,245 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,245 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,245 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,245 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,245 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,246 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,246 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,250 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:35,259 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,259 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,260 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,260 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,260 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,260 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,260 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,260 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,260 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,260 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,260 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,260 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,260 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,260 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,261 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,261 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,261 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,274 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,275 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,275 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,275 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,275 INFO  (MinimalModelGenerator:389) GNI type:ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0043161> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)) // src=<http://purl.obolibrary.org/obo/GO_0004842-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 20:02:35,275 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0043161> <http://purl.obolibrary.org/obo/GO_0043161-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 255 Logical Axioms: 255]
2013-10-16 20:02:35,275 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 20:02:35,275 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>
2013-10-16 20:02:35,275 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0004842-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 256 Logical Axioms: 256]
2013-10-16 20:02:35,276 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,276 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,283 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 7 ms
2013-10-16 20:02:35,283 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,283 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,283 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,283 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,283 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,283 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,283 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,284 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,284 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,284 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,284 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,284 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,284 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,284 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,295 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 10 ms
2013-10-16 20:02:35,295 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,295 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,296 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,296 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,296 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,296 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,297 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,297 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,312 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:35,312 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,312 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,312 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,312 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:35,312 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:35,313 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:35,313 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0043161-proto> is 37
2013-10-16 20:02:35,313 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0043161-proto> is 12
2013-10-16 20:02:35,314 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/PR_000002198>)
2013-10-16 20:02:35,314 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,314 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,314 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,314 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,314 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,314 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,314 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,314 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,314 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,315 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,315 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,315 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,315 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,315 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,315 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,315 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,315 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,322 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 6 ms
2013-10-16 20:02:35,322 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,322 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,323 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,323 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,323 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,323 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,323 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,323 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,337 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,337 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,337 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,337 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,337 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,337 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,338 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,338 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,338 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,338 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,338 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,338 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,338 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,338 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,338 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,339 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,339 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,339 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,339 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,339 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,339 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,339 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,339 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,339 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,339 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,339 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,340 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,340 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,340 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,340 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,353 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,354 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,354 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,354 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,354 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,354 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,354 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,354 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,354 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,354 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,354 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,355 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,359 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:35,367 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,368 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,368 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,368 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,368 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,368 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,368 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,368 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,368 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,369 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,369 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,369 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,369 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,369 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,369 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,369 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,369 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,383 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,383 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,383 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,383 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,383 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/PR_000002198> // src=<http://purl.obolibrary.org/obo/GO_0043161-proto> via <http://purl.obolibrary.org/obo/RO_0002233>
2013-10-16 20:02:35,384 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/PR_000002198> <http://purl.obolibrary.org/obo/PR_000002198-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 258 Logical Axioms: 258]
2013-10-16 20:02:35,384 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/PR_000002198-proto>
2013-10-16 20:02:35,384 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/PR_000002198-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 20:02:35,384 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/PR_000002198-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/PR_000002198-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 259 Logical Axioms: 259]
2013-10-16 20:02:35,384 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,384 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,390 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:35,391 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,391 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,391 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,391 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,391 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,391 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,391 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,391 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,392 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,392 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,392 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,392 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,392 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,392 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,396 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,396 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,396 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,397 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,397 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,397 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,397 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,397 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,397 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,411 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,411 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,411 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,411 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,411 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:35,412 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:35,412 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:35,412 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/PR_000002198-proto> is 11
2013-10-16 20:02:35,412 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/PR_000002198-proto> is 0
2013-10-16 20:02:35,412 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0044257>)
2013-10-16 20:02:35,412 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,412 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,412 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,412 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,412 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,413 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,413 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,413 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,413 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,413 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,413 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,413 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,413 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,413 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,413 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,413 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,414 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,418 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,418 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,418 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,418 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,418 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,419 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,419 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,419 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,419 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,432 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,433 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,433 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,433 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,433 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,433 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,433 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,433 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,433 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,434 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,434 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,434 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,434 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,434 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,434 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,434 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,434 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,434 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,434 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,434 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,435 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,435 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,435 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,435 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,435 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,435 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,435 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,435 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,435 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,435 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,449 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,449 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,450 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,450 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,450 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,450 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,450 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,450 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,450 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,450 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,450 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,450 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,455 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:35,464 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,464 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,464 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,464 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,464 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,464 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,464 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,465 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,465 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,465 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,465 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,465 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,465 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,465 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,465 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,465 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,465 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,479 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,479 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,479 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,480 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,480 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0044257> // src=<http://purl.obolibrary.org/obo/GO_0043161-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 20:02:35,480 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0044257> <http://purl.obolibrary.org/obo/GO_0044257-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 261 Logical Axioms: 261]
2013-10-16 20:02:35,480 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0044257-proto>
2013-10-16 20:02:35,480 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 20:02:35,480 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 262 Logical Axioms: 262]
2013-10-16 20:02:35,480 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,480 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,487 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:35,487 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,487 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,487 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,487 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,487 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,488 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,488 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,488 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,488 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,488 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,488 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,488 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,488 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,488 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,493 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,493 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,493 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,493 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,493 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,493 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,493 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,493 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,493 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,507 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,507 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,507 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,508 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,508 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:35,508 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:35,508 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:35,508 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0044257-proto> is 28
2013-10-16 20:02:35,508 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0044257-proto> is 8
2013-10-16 20:02:35,509 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0071704>)
2013-10-16 20:02:35,509 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,509 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,509 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,509 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,509 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,509 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,509 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,509 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,510 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,510 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,510 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,510 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,510 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,510 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,510 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,510 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,510 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,514 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,515 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,515 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,515 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,515 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,515 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,516 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,516 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,516 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,530 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,530 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,530 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,530 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,530 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,531 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,531 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,531 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,531 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,531 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,531 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,531 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,531 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,531 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,531 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,532 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,532 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,532 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,532 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,532 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,532 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,532 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,532 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,532 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,532 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,532 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,532 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,532 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,533 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,533 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,546 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,547 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,547 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,547 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,547 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,547 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,547 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,547 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,547 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,547 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,547 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,548 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,552 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:35,560 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,560 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,569 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 9 ms
2013-10-16 20:02:35,569 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,569 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,581 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 11 ms
2013-10-16 20:02:35,581 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,581 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,581 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,582 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,582 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,584 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 2 ms
2013-10-16 20:02:35,584 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,584 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,585 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,585 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,585 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,599 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:35,599 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,600 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,600 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,601 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0071704> // src=<http://purl.obolibrary.org/obo/GO_0044257-proto> via <http://purl.obolibrary.org/obo/BFO_0000051>
2013-10-16 20:02:35,601 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0071704> <http://purl.obolibrary.org/obo/GO_0071704-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 264 Logical Axioms: 264]
2013-10-16 20:02:35,601 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0071704-proto>
2013-10-16 20:02:35,601 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>
2013-10-16 20:02:35,601 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 265 Logical Axioms: 265]
2013-10-16 20:02:35,601 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,601 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,608 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:35,608 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,608 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,608 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,608 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,608 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,608 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,609 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,609 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,609 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,609 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,609 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,609 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,609 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,609 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,614 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,614 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,614 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,614 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,614 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,614 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,614 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,614 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,614 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,628 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,628 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,628 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,628 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,629 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:35,629 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:35,629 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:35,629 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0071704-proto> is 10
2013-10-16 20:02:35,629 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0071704-proto> is 4
2013-10-16 20:02:35,629 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/CHEBI_50860>)
2013-10-16 20:02:35,629 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,629 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,630 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,630 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,630 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,630 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,630 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,630 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,630 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,630 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,630 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,630 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,630 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,631 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,631 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,631 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,631 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,636 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,636 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,636 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,636 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,636 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,636 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,636 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,636 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,636 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,650 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,650 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,650 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,651 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,651 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,651 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,651 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,651 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,651 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,651 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,651 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,651 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,651 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,652 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,652 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,652 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,652 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,652 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,652 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,652 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,652 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,652 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,652 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,652 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,652 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,653 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,653 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,653 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,653 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,653 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,667 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,667 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,667 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,667 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,667 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,667 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,667 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,667 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,667 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,668 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,668 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,668 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,673 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 5 ms
2013-10-16 20:02:35,682 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,682 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,682 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,682 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,682 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,684 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 1 ms
2013-10-16 20:02:35,684 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,684 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,684 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,684 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,684 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,684 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,684 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,685 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,685 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,685 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,685 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,699 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,699 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,699 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,699 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,699 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_50860> // src=<http://purl.obolibrary.org/obo/GO_0071704-proto> via <http://purl.obolibrary.org/obo/RO_0000057>
2013-10-16 20:02:35,699 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_50860-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>
2013-10-16 20:02:35,700 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_50860-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 267 Logical Axioms: 267]
2013-10-16 20:02:35,700 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0044257>)
2013-10-16 20:02:35,700 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,700 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,706 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:35,707 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,707 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,707 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,707 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,707 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,707 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,707 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,707 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,707 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,707 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,708 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,708 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,708 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,708 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,712 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,712 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,712 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,712 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,712 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,712 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,713 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,713 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,713 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,726 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,727 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,727 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,727 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,727 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,727 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,727 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,727 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,727 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,728 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,728 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,728 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,728 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,728 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,728 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,728 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,728 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,728 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,728 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,728 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,729 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,729 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,729 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,729 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,729 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,729 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,729 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,729 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,729 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,729 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,743 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,743 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,743 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,743 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,743 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,743 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,744 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,744 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,744 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,744 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,744 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,744 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,748 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:35,757 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,757 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,758 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,758 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,758 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,761 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 3 ms
2013-10-16 20:02:35,761 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,761 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,761 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,762 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,762 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,762 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,762 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,762 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,762 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,762 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,762 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,776 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,776 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,776 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,777 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,777 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0044257> // src=<http://purl.obolibrary.org/obo/GO_0071704-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 20:02:35,777 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>
2013-10-16 20:02:35,777 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 269 Logical Axioms: 269]
2013-10-16 20:02:35,777 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/CHEBI_36080>)
2013-10-16 20:02:35,777 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,777 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,784 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:35,784 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,784 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,784 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,784 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,784 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,785 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,785 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,785 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,785 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,785 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,785 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,785 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,785 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,785 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,790 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,790 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,790 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,791 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,791 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,791 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,791 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,791 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,791 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,805 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,805 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,805 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,805 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,805 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,806 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,806 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,806 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,806 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,806 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,806 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,806 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,806 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,806 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,807 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,807 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,807 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,807 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,807 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,807 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,807 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,807 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,807 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,807 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,807 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,807 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,808 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,808 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,808 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,808 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,821 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,822 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,822 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,822 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,822 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,822 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,822 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,822 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,822 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,822 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,822 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,822 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,827 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:35,835 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,836 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,836 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,836 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,836 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,836 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,836 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,836 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,837 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,837 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,837 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,837 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,837 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,837 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,837 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,837 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,837 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,851 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,851 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,851 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,852 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,852 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_36080> // src=<http://purl.obolibrary.org/obo/GO_0044257-proto> via <http://purl.obolibrary.org/obo/RO_0002233>
2013-10-16 20:02:35,852 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>
2013-10-16 20:02:35,852 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 269 Logical Axioms: 269]
2013-10-16 20:02:35,852 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/CHEBI_36080>)
2013-10-16 20:02:35,852 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,852 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,859 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:35,859 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,859 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,859 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,859 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,859 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,860 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,860 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,860 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,860 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,860 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,860 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,860 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,860 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,860 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,865 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,865 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,865 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,865 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,865 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,865 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,865 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,865 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,865 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,879 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,879 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,879 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,879 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,880 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,880 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,880 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,880 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,880 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,880 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,880 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,880 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,881 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,881 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,881 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,881 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,881 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,881 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,881 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,881 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,881 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,881 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,881 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,881 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,882 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,882 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,882 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,882 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,882 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,882 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,896 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,896 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,896 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,896 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,896 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,896 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,896 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,896 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,896 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,897 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,897 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,897 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,901 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:35,910 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,910 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,910 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,910 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,910 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,911 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,911 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,911 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,911 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,911 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,911 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,911 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,911 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,911 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,911 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,912 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,912 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,925 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,926 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,926 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,926 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,926 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_36080> // src=<http://purl.obolibrary.org/obo/GO_0043161-proto> via <http://purl.obolibrary.org/obo/RO_0002233>
2013-10-16 20:02:35,926 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 20:02:35,926 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 271 Logical Axioms: 271]
2013-10-16 20:02:35,926 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0000502>)
2013-10-16 20:02:35,926 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,927 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,933 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:35,933 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,933 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,933 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,933 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,934 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,934 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,934 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,934 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,934 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,934 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,934 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,934 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,934 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,934 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,939 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:35,939 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,939 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,940 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,940 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,940 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,940 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,940 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,940 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,954 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,954 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,954 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,954 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,954 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,954 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,955 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,955 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,955 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,955 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,955 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,955 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,955 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:35,955 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,955 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,955 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,956 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,956 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,956 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,956 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,956 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,956 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,956 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,956 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,956 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,956 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,956 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,956 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,956 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,957 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:35,970 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:35,970 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:35,970 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:35,971 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:35,971 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:35,971 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:35,971 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:35,971 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:35,971 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:35,971 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:35,971 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:35,971 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:35,978 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 6 ms
2013-10-16 20:02:35,986 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:35,987 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:35,987 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:35,987 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:35,987 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:35,987 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:35,987 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:35,987 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:35,987 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:35,987 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:35,988 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:35,988 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:35,988 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:35,988 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:35,988 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:35,988 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:35,988 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,002 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,002 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,002 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,002 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,003 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0000502> // src=<http://purl.obolibrary.org/obo/GO_0043161-proto> via <http://purl.obolibrary.org/obo/RO_0000057>
2013-10-16 20:02:36,003 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0000502> <http://purl.obolibrary.org/obo/GO_0000502-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 273 Logical Axioms: 273]
2013-10-16 20:02:36,003 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0000502-proto>
2013-10-16 20:02:36,003 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/GO_0000502-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 20:02:36,003 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/GO_0000502-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/GO_0000502-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 274 Logical Axioms: 274]
2013-10-16 20:02:36,003 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,003 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,010 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:36,010 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,010 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,010 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,010 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,010 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,010 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,011 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,011 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,011 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,011 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,011 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,011 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,011 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,011 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,017 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:36,017 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,017 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,017 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,017 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,017 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,017 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,017 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,017 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,031 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,031 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,031 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,032 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,032 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:36,032 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:36,032 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:36,032 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0000502-proto> is 17
2013-10-16 20:02:36,032 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0000502-proto> is 3
2013-10-16 20:02:36,032 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of> <http://purl.obolibrary.org/obo/GO_0030163>)
2013-10-16 20:02:36,032 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,032 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,033 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>)))
2013-10-16 20:02:36,033 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:36,033 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,033 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,033 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,033 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,033 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,033 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,033 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,033 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,034 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,034 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,034 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,034 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,034 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,034 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,034 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:36,034 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,034 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,034 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,034 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,035 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,035 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,035 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,035 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,048 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,049 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,049 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,049 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,049 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,049 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,049 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>)))
2013-10-16 20:02:36,049 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>)))
2013-10-16 20:02:36,049 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:36,049 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,049 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,050 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,050 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,050 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,050 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,050 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,050 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,050 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,050 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,050 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,050 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,050 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,051 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,051 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:36,051 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,051 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,051 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,051 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,051 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,051 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,051 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,051 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,065 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,065 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,065 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,065 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,065 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,065 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,066 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030163> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>) <http://purl.obolibrary.org/obo/GO_0000502>)))
2013-10-16 20:02:36,066 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:36,066 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,066 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,066 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,066 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,066 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,066 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,075 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,075 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,075 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,075 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,075 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,075 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,075 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,076 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,076 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:36,076 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,076 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,076 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,076 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,076 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,076 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,076 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,076 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,090 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,090 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,090 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,091 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,091 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0030163> // src=<http://purl.obolibrary.org/obo/GO_0000502-proto> via <http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of>
2013-10-16 20:02:36,091 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/GO_0030163> <http://purl.obolibrary.org/obo/GO_0030163-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 276 Logical Axioms: 276]
2013-10-16 20:02:36,091 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/GO_0030163-proto>
2013-10-16 20:02:36,091 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of> <http://purl.obolibrary.org/obo/GO_0000502-proto> <http://purl.obolibrary.org/obo/GO_0030163-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 277 Logical Axioms: 277]
2013-10-16 20:02:36,091 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,091 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,098 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:36,098 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,098 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,098 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,098 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,098 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,098 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,098 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,099 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,099 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,099 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,099 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,099 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,099 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,099 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,104 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:36,104 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,104 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,104 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,104 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,104 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,104 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,104 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,104 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,118 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,118 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,118 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,118 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,119 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:36,119 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:36,119 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:36,119 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/GO_0030163-proto> is 20
2013-10-16 20:02:36,119 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/GO_0030163-proto> is 7
2013-10-16 20:02:36,119 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/CHEBI_36080>)
2013-10-16 20:02:36,119 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,120 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,120 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:36,120 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,120 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,120 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,120 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,120 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,120 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,120 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,120 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,120 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,121 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,121 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,121 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,121 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,121 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,126 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:36,126 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,126 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,126 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,126 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,127 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,127 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,127 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,127 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,141 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,141 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,141 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,141 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,141 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,141 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,141 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:36,142 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,142 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,142 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,142 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,142 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,142 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,142 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,142 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,142 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,142 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,142 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,143 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,143 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,143 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,143 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:36,143 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,143 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,143 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,143 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,143 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,143 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,144 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,144 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,160 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 15 ms
2013-10-16 20:02:36,160 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,160 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,160 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,160 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,160 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,160 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:36,160 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,160 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,160 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,161 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,161 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,165 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:36,174 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,174 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,175 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,175 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,175 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,179 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 3 ms
2013-10-16 20:02:36,179 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,179 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,179 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:36,179 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,179 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,179 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,179 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,180 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,180 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,180 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,180 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,194 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:36,194 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,194 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,194 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,195 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/CHEBI_36080> // src=<http://purl.obolibrary.org/obo/GO_0030163-proto> via <http://purl.obolibrary.org/obo/RO_0002233>
2013-10-16 20:02:36,195 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0030163-proto>
2013-10-16 20:02:36,195 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0030163-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/GO_0030163-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 278 Logical Axioms: 278]
2013-10-16 20:02:36,195 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005622>)
2013-10-16 20:02:36,195 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,195 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,202 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:36,202 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,202 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,202 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,202 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,203 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,203 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,203 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,203 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,203 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,203 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,203 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,203 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,203 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,204 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,208 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 4 ms
2013-10-16 20:02:36,209 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,209 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,209 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,209 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,209 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,209 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,209 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,209 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,223 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,223 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,223 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,223 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,223 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,224 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,224 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:36,224 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,224 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,224 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,224 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,224 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,224 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,224 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,224 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,224 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,225 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,225 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,225 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,225 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,225 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,225 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:36,225 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,225 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,225 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,225 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,225 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,225 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,226 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,226 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,239 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,239 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,240 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,240 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,240 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,240 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,240 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:36,240 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,240 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,240 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,240 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,240 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,244 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 4 ms
2013-10-16 20:02:36,253 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,253 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,253 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,253 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,253 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,255 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 1 ms
2013-10-16 20:02:36,255 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,256 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,256 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:36,256 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,256 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,256 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,256 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,256 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,256 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,256 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,257 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,271 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:36,271 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,271 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,271 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,271 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/GO_0005622> // src=<http://purl.obolibrary.org/obo/GO_0000502-proto> via <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 20:02:36,271 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0000502-proto>
2013-10-16 20:02:36,271 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0000502-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>), ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0000502-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 280 Logical Axioms: 280]
2013-10-16 20:02:36,271 INFO  (MinimalModelGenerator:445)   Rel: ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on> <http://purl.obolibrary.org/obo/PR_000016963>)
2013-10-16 20:02:36,271 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,272 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,278 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>)))
2013-10-16 20:02:36,278 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:36,278 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,278 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,279 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,279 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,279 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,279 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,279 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,279 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,279 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,279 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,279 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,279 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,280 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,280 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,280 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:36,280 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,280 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,280 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,280 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,280 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,280 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,280 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,280 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,294 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,294 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,294 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,294 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,295 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,295 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,295 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>)))
2013-10-16 20:02:36,295 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>)))
2013-10-16 20:02:36,295 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:36,295 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,295 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,295 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,295 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,295 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,295 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,296 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,296 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,296 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,296 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,296 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,296 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,296 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,296 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,296 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:36,296 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,296 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,296 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,297 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,297 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,297 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,297 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,297 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,311 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 14 ms
2013-10-16 20:02:36,311 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,311 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,312 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,312 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,312 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,312 WARN  (ChangeIndexingProcessor:66) ELK does not support ObjectInverseOf. Axiom ignored:
EquivalentClasses(<ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>))> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000016963> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>) <http://purl.obolibrary.org/obo/GO_0043161>)))
2013-10-16 20:02:36,312 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 0 ms
2013-10-16 20:02:36,312 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,312 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,312 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,312 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,312 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,312 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,321 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,321 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,321 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,321 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,322 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,322 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,322 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,322 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,322 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 0 ms
2013-10-16 20:02:36,322 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,322 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,322 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,322 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,322 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,323 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,323 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,323 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,337 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,337 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,337 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,337 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,337 INFO  (MinimalModelGenerator:389) GNI type:<http://purl.obolibrary.org/obo/PR_000016963> // src=<http://purl.obolibrary.org/obo/GO_0043161-proto> via <http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on>
2013-10-16 20:02:36,337 INFO  (MinimalModelGenerator:1193) Adding: ClassAssertion(<http://purl.obolibrary.org/obo/PR_000016963> <http://purl.obolibrary.org/obo/PR_000016963-proto>) to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 282 Logical Axioms: 282]
2013-10-16 20:02:36,337 INFO  (MinimalModelGenerator:436)  I:<http://purl.obolibrary.org/obo/PR_000016963-proto>
2013-10-16 20:02:36,338 INFO  (MinimalModelGenerator:1200) Adding: [ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/go/extensions/x-bp-protein#dependent_on> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/PR_000016963-proto>)] to Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox>))) [Axioms: 283 Logical Axioms: 283]
2013-10-16 20:02:36,338 INFO  (LoggingStageExecutor:70) Loading of Axioms started
2013-10-16 20:02:36,338 INFO  (AbstractReasonerStage:179) Loading of Axioms using 8 workers
2013-10-16 20:02:36,344 INFO  (LoggingStageExecutor:103) Loading of Axioms finished in 6 ms
2013-10-16 20:02:36,344 INFO  (LoggingStageExecutor:70) Incremental Context Completion started
2013-10-16 20:02:36,344 INFO  (AbstractReasonerStage:179) Incremental Context Completion using 8 workers
2013-10-16 20:02:36,345 INFO  (LoggingStageExecutor:103) Incremental Context Completion finished in 0 ms
2013-10-16 20:02:36,345 INFO  (LoggingStageExecutor:70) Incremental Deletions Initialization started
2013-10-16 20:02:36,345 INFO  (AbstractReasonerStage:179) Incremental Deletions Initialization using 8 workers
2013-10-16 20:02:36,345 INFO  (LoggingStageExecutor:103) Incremental Deletions Initialization finished in 0 ms
2013-10-16 20:02:36,345 INFO  (LoggingStageExecutor:70) Incremental Deletion started
2013-10-16 20:02:36,345 INFO  (AbstractReasonerStage:179) Incremental Deletion using 8 workers
2013-10-16 20:02:36,345 INFO  (LoggingStageExecutor:103) Incremental Deletion finished in 0 ms
2013-10-16 20:02:36,345 INFO  (LoggingStageExecutor:70) Incremental Overdeletion Pruning started
2013-10-16 20:02:36,345 INFO  (AbstractReasonerStage:179) Incremental Overdeletion Pruning using 8 workers
2013-10-16 20:02:36,345 INFO  (LoggingStageExecutor:103) Incremental Overdeletion Pruning finished in 0 ms
2013-10-16 20:02:36,345 INFO  (LoggingStageExecutor:70) Incremental Additions Initialization started
2013-10-16 20:02:36,346 INFO  (AbstractReasonerStage:179) Incremental Additions Initialization using 8 workers
2013-10-16 20:02:36,351 INFO  (LoggingStageExecutor:103) Incremental Additions Initialization finished in 5 ms
2013-10-16 20:02:36,351 INFO  (LoggingStageExecutor:70) Incremental Addition started
2013-10-16 20:02:36,351 INFO  (AbstractReasonerStage:179) Incremental Addition using 8 workers
2013-10-16 20:02:36,351 INFO  (LoggingStageExecutor:103) Incremental Addition finished in 0 ms
2013-10-16 20:02:36,351 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Cleaning started
2013-10-16 20:02:36,351 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Cleaning using 8 workers
2013-10-16 20:02:36,352 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Cleaning finished in 0 ms
2013-10-16 20:02:36,352 INFO  (LoggingStageExecutor:70) Incremental Consistency Checking started
2013-10-16 20:02:36,352 INFO  (AbstractReasonerStage:179) Incremental Consistency Checking using 8 workers
2013-10-16 20:02:36,365 INFO  (LoggingStageExecutor:103) Incremental Consistency Checking finished in 13 ms
2013-10-16 20:02:36,365 INFO  (LoggingStageExecutor:70) Incremental Taxonomy Construction started
2013-10-16 20:02:36,365 INFO  (AbstractReasonerStage:179) Incremental Taxonomy Construction using 8 workers
2013-10-16 20:02:36,366 INFO  (LoggingStageExecutor:103) Incremental Taxonomy Construction finished in 0 ms
2013-10-16 20:02:36,366 INFO  (LoggingStageExecutor:70) Incremental Instance Taxonomy Computation started
2013-10-16 20:02:36,366 INFO  (AbstractReasonerStage:179) Incremental Instance Taxonomy Computation using 8 workers
2013-10-16 20:02:36,366 INFO  (LoggingStageExecutor:103) Incremental Instance Taxonomy Computation finished in 0 ms
2013-10-16 20:02:36,366 INFO  (MinimalModelGenerator:962) Supers for <http://purl.obolibrary.org/obo/PR_000016963-proto> is 11
2013-10-16 20:02:36,366 INFO  (MinimalModelGenerator:970) Supers in QMAP for <http://purl.obolibrary.org/obo/PR_000016963-proto> is 0
2013-10-16 20:02:36,366 INFO  (MinimalModelGenerator:604) Collapsing...
2013-10-16 20:02:36,369 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_33709-proto> }
2013-10-16 20:02:36,370 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_24433-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33708-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_46883-proto> }
2013-10-16 20:02:36,371 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_33704-proto> }
2013-10-16 20:02:36,371 INFO  (MinimalModelGenerator:666)        overwriting existing target <http://purl.obolibrary.org/obo/CHEBI_33708-proto> ==> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 20:02:36,372 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/GO_0071704-proto> ==> { <http://purl.obolibrary.org/obo/GO_0016567-proto> ==OR== <http://purl.obolibrary.org/obo/GO_0043161-proto> }
2013-10-16 20:02:36,372 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_33250-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_25805-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_49637-proto> }
2013-10-16 20:02:36,373 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_24433-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33700-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_23019-proto> }
2013-10-16 20:02:36,374 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/GO_0071704-proto> ==> { <http://purl.obolibrary.org/obo/GO_0016567-proto> ==OR== <http://purl.obolibrary.org/obo/GO_0030163-proto> }
2013-10-16 20:02:36,374 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_24433-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33700-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_23004-proto> }
2013-10-16 20:02:36,376 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_13941-proto> }
2013-10-16 20:02:36,376 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_24433-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33700-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_43176-proto> }
2013-10-16 20:02:36,376 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_33250-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_25805-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_25555-proto> }
2013-10-16 20:02:36,377 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/GO_0071704-proto> ==> { <http://purl.obolibrary.org/obo/GO_0016567-proto> ==OR== <http://purl.obolibrary.org/obo/GO_0044257-proto> }
2013-10-16 20:02:36,377 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/GO_0030163-proto> ==> { <http://purl.obolibrary.org/obo/GO_0043161-proto> ==OR== <http://purl.obolibrary.org/obo/GO_0044257-proto> }
2013-10-16 20:02:36,378 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_33709-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33704-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_28616-proto> }
2013-10-16 20:02:36,379 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_28616-proto> }
2013-10-16 20:02:36,379 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_33250-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_25805-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_27594-proto> }
2013-10-16 20:02:36,379 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_24433-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_33700-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_46629-proto> }
2013-10-16 20:02:36,380 INFO  (MinimalModelGenerator:670)        keeping existing target <http://purl.obolibrary.org/obo/CHEBI_16541-proto>, which is more specific than <http://purl.obolibrary.org/obo/CHEBI_16670-proto>
2013-10-16 20:02:36,381 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_60466-proto> }
2013-10-16 20:02:36,382 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_37022-proto> }
2013-10-16 20:02:36,384 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_33558-proto> }
2013-10-16 20:02:36,385 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_37022-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_13941-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_33558-proto> }
2013-10-16 20:02:36,386 INFO  (MinimalModelGenerator:676)        DUAL TARGETS <http://purl.obolibrary.org/obo/CHEBI_50860-proto> ==> { <http://purl.obolibrary.org/obo/CHEBI_16541-proto> ==OR== <http://purl.obolibrary.org/obo/CHEBI_36080-proto> }
2013-10-16 20:02:36,386 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/GO_0071704-proto> -> <http://purl.obolibrary.org/obo/GO_0016567-proto>
2013-10-16 20:02:36,386 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 20:02:36,386 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_33250-proto> -> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 20:02:36,386 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 20:02:36,386 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/GO_0030163-proto> -> <http://purl.obolibrary.org/obo/GO_0043161-proto>
2013-10-16 20:02:36,386 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 20:02:36,386 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_37022-proto> -> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 20:02:36,386 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 20:02:36,387 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_50860-proto> -> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:36,387 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 20:02:36,387 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/GO_0000502-proto> -> <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 20:02:36,387 INFO  (MinimalModelGenerator:703)   ACTUALLY collapsing <http://purl.obolibrary.org/obo/GO_0000502-proto> -> <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 20:02:36,389 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_24433-proto> -> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 20:02:36,389 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 20:02:36,389 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_33708-proto> -> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 20:02:36,389 INFO  (MinimalModelGenerator:703)   ACTUALLY collapsing <http://purl.obolibrary.org/obo/CHEBI_33708-proto> -> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 20:02:36,389 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_33709-proto> -> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:36,389 INFO  (MinimalModelGenerator:700)    **multi-candidate
2013-10-16 20:02:36,389 INFO  (MinimalModelGenerator:698)   ?collapsing <http://purl.obolibrary.org/obo/CHEBI_16670-proto> -> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:36,390 INFO  (MinimalModelGenerator:703)   ACTUALLY collapsing <http://purl.obolibrary.org/obo/CHEBI_16670-proto> -> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:36,390 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 20:02:36,390 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)
2013-10-16 20:02:36,390 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/GO_0071704> <http://purl.obolibrary.org/obo/GO_0071704-proto>)
2013-10-16 20:02:36,390 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 20:02:36,390 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,390 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,390 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33250> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/go/extensions/gene_ontology_xp#capable_of_part_of> <http://purl.obolibrary.org/obo/GO_0030877-proto> <http://purl.obolibrary.org/obo/GO_0030163-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/GO_0030163> <http://purl.obolibrary.org/obo/GO_0030163-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_role> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_39141-proto>)
2013-10-16 20:02:36,391 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_50860-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/CHEBI_50860-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_33709> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_50860> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,392 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_24433> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/GO_0030163-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46883-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_substituent_group_from> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002352> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/GO_0030163-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_46629-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ClassAssertion(<http://purl.obolibrary.org/obo/CHEBI_37022> <http://purl.obolibrary.org/obo/CHEBI_37022-proto>)
2013-10-16 20:02:36,393 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_43176-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_24433-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_23019-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_33709-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_37022-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_33250-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0071704-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/GO_0071704-proto> <http://purl.obolibrary.org/obo/CHEBI_50860-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_24433-proto>)
2013-10-16 20:02:36,394 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33709-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)
2013-10-16 20:02:36,395 INFO  (MinimalModelGenerator:726) REMOVING AMBIGUOUS INDIVIDUAL:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33250-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)
2013-10-16 20:02:36,396 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=4
2013-10-16 20:02:36,419 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,420 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>
2013-10-16 20:02:36,429 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 20:02:36,435 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>
2013-10-16 20:02:36,437 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/GO_0005737-proto>
2013-10-16 20:02:36,443 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 20:02:36,455 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,455 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,455 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,455 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,455 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,455 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,455 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,455 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,456 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,456 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,456 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>
2013-10-16 20:02:36,457 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 20:02:36,457 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/GO_0030877-proto>
2013-10-16 20:02:36,459 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 20:02:36,460 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>
2013-10-16 20:02:36,464 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,464 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,464 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,464 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,464 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,465 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,465 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,465 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,465 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,465 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,465 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>
2013-10-16 20:02:36,466 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>
2013-10-16 20:02:36,466 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=92
2013-10-16 20:02:36,467 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>
2013-10-16 20:02:36,469 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 20:02:36,469 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 20:02:36,469 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_13941-proto>
2013-10-16 20:02:36,470 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0004842-proto> <http://purl.obolibrary.org/obo/GO_0044257-proto>
2013-10-16 20:02:36,471 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>
2013-10-16 20:02:36,471 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>
2013-10-16 20:02:36,472 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 20:02:36,472 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 20:02:36,472 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_60466-proto>
2013-10-16 20:02:36,475 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 20:02:36,475 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 20:02:36,475 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 20:02:36,475 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33700-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 20:02:36,475 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 20:02:36,475 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 20:02:36,475 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_23004-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 20:02:36,475 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_36080-proto>
2013-10-16 20:02:36,490 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:36,490 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:36,490 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_28616-proto>
2013-10-16 20:02:36,491 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>
2013-10-16 20:02:36,492 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 20:02:36,492 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 20:02:36,492 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_29337-proto>
2013-10-16 20:02:36,494 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 20:02:36,494 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 20:02:36,494 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33558-proto>
2013-10-16 20:02:36,495 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 20:02:36,495 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 20:02:36,495 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_28938-proto>
2013-10-16 20:02:36,497 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:36,497 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:36,497 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>
2013-10-16 20:02:36,499 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 20:02:36,499 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 20:02:36,499 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_16134-proto>
2013-10-16 20:02:36,501 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:36,501 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:36,501 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33704-proto>
2013-10-16 20:02:36,502 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0030877-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>
2013-10-16 20:02:36,503 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33253-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 20:02:36,503 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_10545-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 20:02:36,503 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_29340-proto>
2013-10-16 20:02:36,503 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0005737-proto> <http://purl.obolibrary.org/obo/GO_0005623-proto>
2013-10-16 20:02:36,503 INFO  (MinimalModelGenerator:1173) Including inverse: <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0030877-proto> <http://purl.obolibrary.org/obo/GO_0005623-proto>
2013-10-16 20:02:36,503 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=92
2013-10-16 20:02:36,504 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,506 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,507 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,509 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,511 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,511 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,512 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,513 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,514 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,514 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,516 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,517 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,518 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,518 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,519 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,520 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,521 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,523 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,524 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,526 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,526 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,527 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,528 INFO  (MinimalModelGenerator:1361) removing redundant axioms, #=0
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1304) Normalizing: <http://purl.obolibrary.org/obo/BFO_0000066>
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1307) Inverse props: [<http://purl.obolibrary.org/obo/BFO_0000067>]
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1304) Normalizing: <http://purl.obolibrary.org/obo/RO_0002223>
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1307) Inverse props: [<http://purl.obolibrary.org/obo/RO_0002224>]
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1304) Normalizing: <http://purl.obolibrary.org/obo/BFO_0000050>
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1307) Inverse props: [<http://purl.obolibrary.org/obo/BFO_0000051>]
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33252-proto> <http://purl.obolibrary.org/obo/CHEBI_33253-proto>)
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_60466-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,529 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0016567-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0043161-proto> <http://purl.obolibrary.org/obo/GO_0004842-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_46629-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005623-proto> <http://purl.obolibrary.org/obo/GO_0005622-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_36080-proto> <http://purl.obolibrary.org/obo/CHEBI_16541-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_33700-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25805-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005622-proto> <http://purl.obolibrary.org/obo/GO_0005737-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33558-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29340-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0044257-proto> <http://purl.obolibrary.org/obo/GO_0043161-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_29337-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)
2013-10-16 20:02:36,530 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16541-proto> <http://purl.obolibrary.org/obo/CHEBI_23004-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_27594-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_49637-proto> <http://purl.obolibrary.org/obo/CHEBI_10545-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_25555-proto> <http://purl.obolibrary.org/obo/CHEBI_33252-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28938-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/GO_0005737-proto> <http://purl.obolibrary.org/obo/GO_0030877-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_49637-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_23019-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_13941-proto> <http://purl.obolibrary.org/obo/CHEBI_25805-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_43176-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_28616-proto> <http://purl.obolibrary.org/obo/CHEBI_46883-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_16134-proto> <http://purl.obolibrary.org/obo/CHEBI_25555-proto>)
2013-10-16 20:02:36,531 INFO  (MinimalModelGenerator:1313)   FLIPPING:ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_33704-proto> <http://purl.obolibrary.org/obo/CHEBI_27594-proto>)
2013-10-16 20:02:36,532 INFO  (MinimalModelGenerator:1304) Normalizing: <http://purl.obolibrary.org/obo/RO_0002211>
2013-10-16 20:02:36,532 INFO  (MinimalModelGenerator:1307) Inverse props: [<http://purl.obolibrary.org/obo/RO_0002334>]
saving:http://purl.obolibrary.org/obo/go/extensions/x-signaling.owl__abox