GO Monthly Release Notes for May 2007
========================
Generated on Thu Jul 19 07:04:49 2007
Files used:
gene_ontology.obo
OLD: version 4.232, 27:04:2007 19:30
NEW: version 4.247, 30:05:2007 19:30
goslim_generic
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in biological_process ontology (50 new terms)
GO:0010424 GO:0006259 TAIR D cytosine methylation within a CG sequence
GO:0040029
GO:0010425 GO:0006259 TAIR D cytosine methylation within a CNG sequence
GO:0040029
GO:0010426 GO:0006259 TAIR D cytosine methylation within a CNN sequence
GO:0040029
GO:0010430 GO:0006629 TAIR D fatty acid omega-oxidation
GO:0010431 GO:0000003 TAIR D seed maturation
GO:0007275
GO:0010432 GO:0007275 TAIR D 1711527 bract development
GO:0010433 GO:0007275 TAIR D 1711527 bract morphogenesis
GO:0009653
GO:0010434 GO:0007275 TAIR D 1711527 bract formation
GO:0009653
GO:0033182 GO:0006259 MAH D regulation of histone ubiquitination
GO:0006464
GO:0006996
GO:0050789
GO:0033183 GO:0006259 MAH D negative regulation of histone ubiquitination
GO:0006464
GO:0006996
GO:0050789
GO:0033184 GO:0006259 MAH D positive regulation of histone ubiquitination
GO:0006464
GO:0006996
GO:0050789
GO:0033189 GO:0007154 MAH D response to vitamin A
GO:0009605
GO:0033194 GO:0006950 MAH D response to hydroperoxide
GO:0008152
GO:0033195 GO:0006950 MAH D response to alkyl hydroperoxide
GO:0008152
GO:0033197 GO:0007154 MAH D response to vitamin E
GO:0009605
GO:0033198 GO:0008150 MAH D response to ATP
GO:0033205 GO:0007049 MAH D cytokinesis during cell cycle
GO:0033206 GO:0007049 MAH D cytokinesis after meiosis
GO:0033209 GO:0007165 MAH D tumor necrosis factor-mediated signaling pathway
GO:0033210 GO:0007165 MAH D leptin-mediated signaling pathway
GO:0033211 GO:0007165 MAH D adiponectin-mediated signaling pathway
GO:0033212 GO:0019725 MAH D 1702938 iron assimilation
GO:0033213 GO:0019725 MAH D 1702938 iron assimilation by capture and transport
GO:0033214 GO:0019725 MAH D 1702938 iron assimilation by chelation and transport
GO:0033215 GO:0019725 MAH D 1702938 iron assimilation by reduction and transport
GO:0033216 GO:0006811 MAH D 1702938 ferric iron import
GO:0033217 GO:0006350 MAH D regulation of transcription from RNA polymerase II promoter in response to iron ion starvation
GO:0006950
GO:0007154
GO:0009605
GO:0050789
GO:0055048 GO:0007010 AI D 1707593 anastral spindle assembly
GO:0019538
GO:0055049 GO:0007010 AI D 1707593 astral spindle assembly
GO:0019538
GO:0055050 GO:0007010 AI D 1707593 astral spindle assembly involved in male meiosis
GO:0019538
GO:0060115 GO:0007275 AI D vestibular receptor cell fate commitment
GO:0030154
GO:0060116 GO:0009653 AI D vestibular receptor cell morphogenesis
GO:0009790
GO:0016043
GO:0030154
GO:0060117 GO:0007275 AI D auditory receptor cell development
GO:0030154
GO:0060118 GO:0007275 AI D vestibular receptor cell development
GO:0030154
GO:0060119 GO:0007275 AI D inner ear receptor cell development
GO:0030154
GO:0060120 GO:0007275 AI D inner ear receptor cell fate commitment
GO:0030154
GO:0060121 GO:0009653 AI D vestibular receptor cell stereocilium organization and biogenesis
GO:0009790
GO:0016043
GO:0030154
GO:0060122 GO:0007275 AI D inner ear receptor stereocilium organization and biogenesis
GO:0009653
GO:0016043
GO:0030154
GO:0060123 GO:0006810 AI D regulation of growth hormone secretion
GO:0007267
GO:0050789
GO:0060124 GO:0006810 AI D positive regulation of growth hormone secretion
GO:0007267
GO:0050789
GO:0060125 GO:0006810 AI D negative regulation of growth hormone secretion
GO:0007267
GO:0050789
GO:0060126 GO:0007275 AI D somatotropin secreting cell differentiation
GO:0030154
GO:0060127 GO:0007275 AI D prolactin secreting cell differentiation
GO:0030154
GO:0060128 GO:0007275 AI D adrenocorticotropic hormone secreting cell differentiation
GO:0030154
GO:0060129 GO:0007275 AI D thyroid stimulating hormone secreting cell differentiation
GO:0030154
GO:0060130 GO:0007275 AI D thyroid stimulating hormone secreting cell development
GO:0030154
GO:0060131 GO:0007275 AI D adrenocorticotropic hormone secreting cell development
GO:0030154
GO:0060132 GO:0007275 AI D prolactin secreting cell development
GO:0030154
GO:0060133 GO:0007275 AI D somatotropin secreting cell development
GO:0030154
GO:0060134 GO:0009605 AI D prepulse inhibition
GO:0050789
New obsoletions in biological_process ontology
GO:0006755, carbamoyl phosphate-ADP transphosphorylation: This term was made obsolete because, according to PUMA2, this "pathway" is a single reaction, corresponding to carbamate kinase activity (GO:0008804; EC:2.7.2.2).
Term name changes in biological_process ontology
GO:0007053: male meiotic spindle assembly (sensu Metazoa) --> spindle assembly involved in male meiosis
GO:0007054: male meiosis I spindle assembly (sensu Metazoa) --> spindle assembly involved in male meiosis I
GO:0007055: male meiosis II spindle assembly (sensu Metazoa) --> spindle assembly involved male meiosis II
GO:0007056: female meiotic spindle assembly (sensu Metazoa) --> spindle assembly involved in female meiosis
GO:0007057: female meiosis I spindle assembly (sensu Metazoa) --> spindle assembly involved in female meiosis I
GO:0007058: female meiosis II spindle assembly (sensu Metazoa) --> spindle assembly involved in female meiosis II
GO:0009971: male meiotic spindle assembly (sensu Viridiplantae) --> anastral spindle assembly involved in male meiosis
GO:0030994: primary cell septum diassembly --> primary cell septum disassembly
GO:0051256: mitotic spindle midzone assembly --> spindle midzone assembly involved in mitosis
GO:0051257: meiotic spindle midzone assembly --> spindle midzone assembly involved in meiosis
GO:0060088: stereocilium organization and biogenesis --> auditory receptor cell stereocilium organization and biogenesis
GO:0060113: inner ear receptor cell differenatioan --> inner ear receptor cell differenation
New definitions for biological_process ontology terms (7 new definitions)
GO:0006755, carbamoyl phosphate-ADP transphosphorylation
GO:0031668, cellular response to extracellular stimulus
GO:0032107, regulation of response to nutrient levels
GO:0032108, negative regulation of response to nutrient levels
GO:0032109, positive regulation of response to nutrient levels
GO:0032684, negative regulation of fractalkine production
GO:0032835, glomerulus development
New term merges in biological_process ontology
GO:0051226 has been merged into GO:0051225, spindle assembly
GO:0051227 has been merged into GO:0051225, spindle assembly
Term movements in biological_process ontology:
Terms movements under GO Slim term 'cell cycle ; GO:0007049'
+ GO:0000911, cytokinesis by cell plate formation
+ GO:0000912, cytokinesis, formation of actomyosin apparatus
+ GO:0000913, preprophase band formation
+ GO:0000914, phragmoplast formation
+ GO:0000915, cytokinesis, contractile ring formation
+ GO:0000916, cytokinesis, contractile ring contraction
+ GO:0000919, cell plate formation
+ GO:0007112, male meiosis cytokinesis
+ GO:0010069, zygote asymmetric cytokinesis in the embryo sac
+ GO:0010235, guard mother cell cytokinesis
+ GO:0032186, cellular bud neck septin ring organization
+ GO:0032188, establishment of contractile ring localization
Terms movements under GO Slim term 'multicellular organismal development ; GO:0007275'
+ GO:0021979, hypothalamus cell differentiation
Terms movements under GO Slim term 'biological_process ; GO:0008150'
- GO:0000911, cytokinesis by cell plate formation
- GO:0000913, preprophase band formation
- GO:0000916, cytokinesis, contractile ring contraction
- GO:0000919, cell plate formation
- GO:0007112, male meiosis cytokinesis
Terms movements under GO Slim term 'anatomical structure morphogenesis ; GO:0009653'
- GO:0009912, auditory receptor cell fate commitment
- GO:0009999, negative regulation of auditory receptor cell fate specification
- GO:0042491, auditory receptor cell differentiation
- GO:0042667, auditory receptor cell fate specification
- GO:0042668, auditory receptor cell fate determination
- GO:0042669, regulation of auditory receptor cell fate specification
Terms movements under GO Slim term 'cell homeostasis ; GO:0019725'
+ GO:0015685, ferric-enterobactin transport
+ GO:0015686, ferric triacetylfusarinine C transport
+ GO:0015687, ferric-hydroxamate transport
+ GO:0015892, siderophore-iron transport
Terms movements under GO Slim term 'cell differentiation ; GO:0030154'
- GO:0000027, ribosomal large subunit assembly and maintenance
- GO:0000028, ribosomal small subunit assembly and maintenance
- GO:0000059, protein import into nucleus, docking
- GO:0000147, actin cortical patch assembly
- GO:0000183, chromatin silencing at rDNA
- GO:0000244, assembly of spliceosomal tri-snRNP
- GO:0000245, spliceosome assembly
- GO:0000348, nuclear mRNA branch site recognition
- GO:0000349, generation of catalytic spliceosome for first transesterification step
- GO:0000350, generation of catalytic spliceosome for second transesterification step
- GO:0000351, assembly of spliceosomal tri-snRNP U4/U6.U5
- GO:0000352, trans assembly of SL containing precatalytic spliceosome
- GO:0000353, formation of quadruple SL/U4/U5/U6 snRNP
- GO:0000354, cis assembly of pre-catalytic spliceosome
- GO:0000355, assembly of spliceosomal tri-snRNP U4atac/U6atac.U5
- GO:0000356, U2-type catalytic spliceosome formation for first transesterification step
- GO:0000357, U12-type catalytic spliceosome formation for first transesterification step
- GO:0000358, formation of catalytic U2-type spliceosome for second transesterification step
- GO:0000359, formation of catalytic U12-type spliceosome for second transesterification step
- GO:0000360, cis assembly of U2-type pre-catalytic spliceosome
- GO:0000361, cis assembly of U12-type pre-catalytic spliceosome
- GO:0000368, U2-type nuclear mRNA 5'-splice site recognition
- GO:0000369, U12-type nuclear mRNA 5'-splice site recognition
- GO:0000370, U2-type nuclear mRNA branch site recognition
- GO:0000371, U12-type nuclear mRNA branch site recognition
- GO:0000382, U12-type nuclear mRNA 3'-splice site recognition
- GO:0000383, U2-type nuclear mRNA 3'-splice site recognition
- GO:0000388, spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)
- GO:0000389, nuclear mRNA 3'-splice site recognition
- GO:0000393, spliceosomal conformational changes to generate catalytic conformation
- GO:0000395, nuclear mRNA 5'-splice site recognition
- GO:0000396, U2-type spliceosome conformational change to release U4 and U1
- GO:0000397, U12-type spliceosome conformational change to release U4atac and U11
- GO:0000921, septin ring assembly
- GO:0001677, formation of translation initiation ternary complex
- GO:0001718, conversion of met-tRNAf to fmet-tRNA
- GO:0001731, formation of translation preinitiation complex
- GO:0001732, formation of translation initiation complex
- GO:0001927, exocyst assembly
- GO:0001928, regulation of exocyst assembly
- GO:0001929, negative regulation of exocyst assembly
- GO:0001930, positive regulation of exocyst assembly
- GO:0002396, MHC protein complex assembly
- GO:0002397, MHC class I protein complex assembly
- GO:0002398, MHC class Ib protein complex assembly
- GO:0002399, MHC class II protein complex assembly
- GO:0002492, peptide antigen assembly with MHC class Ib protein complex
- GO:0002493, lipid antigen assembly with MHC class Ib protein complex
- GO:0002501, peptide antigen assembly with MHC protein complex
- GO:0002502, peptide antigen assembly with MHC class I protein complex
- GO:0002503, peptide antigen assembly with MHC class II protein complex
- GO:0002506, polysaccharide assembly with MHC class II protein complex
- GO:0006267, pre-replicative complex formation
- GO:0006293, nucleotide-excision repair, preincision complex stabilization
- GO:0006294, nucleotide-excision repair, preincision complex formation
- GO:0006334, nucleosome assembly
- GO:0006335, DNA replication-dependent nucleosome assembly
- GO:0006336, DNA replication-independent nucleosome assembly
- GO:0006342, chromatin silencing
- GO:0006343, establishment of chromatin silencing
- GO:0006344, maintenance of chromatin silencing
- GO:0006346, methylation-dependent chromatin silencing
- GO:0006348, chromatin silencing at telomere
- GO:0006352, transcription initiation
- GO:0006361, transcription initiation from RNA polymerase I promoter
- GO:0006367, transcription initiation from RNA polymerase II promoter
- GO:0006376, mRNA splice site selection
- GO:0006384, transcription initiation from RNA polymerase III promoter
- GO:0006391, transcription initiation from mitochondrial promoter
- GO:0006413, translational initiation
- GO:0006446, regulation of translational initiation
- GO:0006447, regulation of translational initiation by iron
- GO:0006461, protein complex assembly
- GO:0006463, steroid hormone receptor complex assembly
- GO:0006617, SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
- GO:0007043, intercellular junction assembly
- GO:0007044, cell-substrate junction assembly
- GO:0007045, hemi-adherens junction assembly
- GO:0007053, spindle assembly involved in male meiosis
- GO:0007054, spindle assembly involved in male meiosis I
- GO:0007055, spindle assembly involved male meiosis II
- GO:0007056, spindle assembly involved in female meiosis
- GO:0007057, spindle assembly involved in female meiosis I
- GO:0007058, spindle assembly involved in female meiosis II
- GO:0007087, mitotic nuclear pore complex reassembly
- GO:0007130, synaptonemal complex assembly
- GO:0007171, transmembrane receptor protein tyrosine kinase activation (dimerization)
- GO:0007172, signal complex formation
- GO:0007181, transforming growth factor beta receptor complex assembly
- GO:0007183, SMAD protein complex assembly
- GO:0007261, JAK-induced STAT protein dimerization
- GO:0008302, ring canal formation, actin assembly
- GO:0008535, cytochrome c oxidase complex assembly
- GO:0009971, anastral spindle assembly involved in male meiosis
- GO:0010190, cytochrome b6f complex assembly
- GO:0010207, photosystem II assembly
- GO:0010257, NADH dehydrogenase complex assembly
- GO:0010258, NADH dehydrogenase complex (plastoquinone) assembly
- GO:0010265, SCF complex assembly
- GO:0010270, photosystem II oxygen evolving complex assembly
- GO:0010275, NAD(P)H dehydrogenase complex assembly
- GO:0010387, signalosome assembly
- GO:0016082, synaptic vesicle priming
- GO:0016245, hyperphosphorylation of RNA polymerase II
- GO:0016264, gap junction assembly
- GO:0016457, dosage compensation complex assembly during dosage compensation by hyperactivation of X chromosome
- GO:0016560, protein import into peroxisome matrix, docking
- GO:0016584, nucleosome spacing
- GO:0017004, cytochrome complex assembly
- GO:0017062, cytochrome bc(1) complex assembly
- GO:0018063, cytochrome c-heme linkage
- GO:0018174, protein-heme P460 linkage
- GO:0018186, peroxidase-heme linkage
- GO:0018359, protein-heme P460 linkage via heme P460-bis-L-cysteine-L-tyrosine
- GO:0018360, protein-heme P460 linkage via heme P460-bis-L-cysteine-L-lysine
- GO:0018362, peroxidase-heme linkage via dihydroxyheme-L-aspartyl ester-L-glutamyl ester
- GO:0018363, peroxidase-heme linkage via dihydroxyheme-L-aspartyl ester-L-glutamyl ester-L-methionine sulfonium
- GO:0018378, cytochrome c-heme linkage via heme-L-cysteine
- GO:0018379, cytochrome c-heme linkage via heme-bis-L-cysteine
- GO:0018419, protein catenane formation
- GO:0019068, virus assembly
- GO:0019069, viral capsid assembly
- GO:0019070, viral genome maturation
- GO:0019071, viral DNA cleavage
- GO:0019072, viral genome packaging
- GO:0019073, viral DNA genome packaging
- GO:0019074, viral RNA genome packaging
- GO:0019937, protein catenane formation via N6-(L-isoaspartyl)-L-lysine, autocatalytic
- GO:0019991, septate junction assembly
- GO:0022607, cellular component assembly
- GO:0022618, protein-RNA complex assembly
- GO:0030423, RNA interference, targeting of mRNA for destruction
- GO:0030466, chromatin silencing at silent mating-type cassette
- GO:0030702, chromatin silencing at centromere
- GO:0030913, paranodal junction assembly
- GO:0031034, myosin filament assembly
- GO:0031036, myosin II filament assembly
- GO:0031048, small RNA-mediated chromatin silencing
- GO:0031203, posttranslational protein targeting to membrane, docking
- GO:0031333, negative regulation of protein complex assembly
- GO:0031334, positive regulation of protein complex assembly
- GO:0031497, chromatin assembly
- GO:0031507, heterochromatin formation
- GO:0031508, centric heterochromatin formation
- GO:0031509, telomeric heterochromatin formation
- GO:0031581, hemidesmosome assembly
- GO:0031935, regulation of chromatin silencing
- GO:0031936, negative regulation of chromatin silencing
- GO:0031937, positive regulation of chromatin silencing
- GO:0031938, regulation of chromatin silencing at telomere
- GO:0031939, negative regulation of chromatin silencing at telomere
- GO:0031940, positive regulation of chromatin silencing at telomere
- GO:0032057, negative regulation of translation initiation in response to stress
- GO:0032058, positive regulation of translation initiation in response to stress
- GO:0032063, negative regulation of translation initiation in response to osmotic stress
- GO:0032064, positive regulation of translation initiation in response to osmotic stress
- GO:0032202, telomere assembly
- GO:0032203, telomere formation via telomerase
- GO:0032459, regulation of protein oligomerization
- GO:0032460, negative regulation of protein oligomerization
- GO:0032461, positive regulation of protein oligomerization
- GO:0032462, regulation of protein homooligomerization
- GO:0032463, negative regulation of protein homooligomerization
- GO:0032464, positive regulation of protein homooligomerization
- GO:0032981, mitochondrial respiratory chain complex I assembly
- GO:0033108, mitochondrial respiratory chain complex assembly
- GO:0035087, RNA interference, siRNA loading onto RISC
- GO:0035280, miRNA-mediated gene silencing, miRNA loading onto RISC
- GO:0042255, ribosome assembly
- GO:0042256, mature ribosome assembly
- GO:0042257, ribosomal subunit assembly
- GO:0042714, dosage compensation complex assembly
- GO:0042715, dosage compensation complex assembly during dosage compensation by hypoactivation of X chromosome
- GO:0042963, phage assembly
- GO:0043113, receptor clustering
- GO:0043248, proteasome assembly
- GO:0043254, regulation of protein complex assembly
- GO:0043297, apical junction assembly
- GO:0043461, F-type ATPase complex assembly
- GO:0043520, regulation of myosin II filament assembly
- GO:0043558, regulation of translation initiation in response to stress
- GO:0043561, regulation of translation initiation in response to osmotic stress
- GO:0043623, cellular protein complex assembly
- GO:0045110, intermediate filament bundle assembly
- GO:0045186, zonula adherens assembly
- GO:0045328, cytochrome P450 4A1-heme linkage
- GO:0045947, negative regulation of translational initiation
- GO:0045948, positive regulation of translational initiation
- GO:0045993, negative regulation of translational initiation by iron
- GO:0045994, positive regulation of translational initiation by iron
- GO:0046742, viral capsid transport in host cell nucleus
- GO:0046743, viral capsid transport in host cell cytoplasm
- GO:0046744, viral capsid envelopment
- GO:0046745, viral capsid re-envelopment
- GO:0046746, virus budding from nuclear membrane during viral capsid re-envelopment
- GO:0046747, virus budding from Golgi membrane during viral capsid re-envelopment
- GO:0046748, virus budding from ER membrane during viral capsid re-envelopment
- GO:0046749, virus budding from nuclear membrane during viral capsid envelopment
- GO:0046750, virus budding from Golgi membrane during viral capsid envelopment
- GO:0046751, virus budding from ER membrane during viral capsid envelopment
- GO:0046752, viral capsid precursor localization in host cell nucleus
- GO:0046767, virus budding from plasma membrane during viral capsid envelopment
- GO:0046768, virus budding from plasma membrane during viral capsid re-envelopment
- GO:0046769, virus budding from inner nuclear membrane during viral capsid re-envelopment
- GO:0046770, virus budding from outer nuclear membrane during viral capsid re-envelopment
- GO:0046771, virus budding from inner nuclear membrane during viral capsid envelopment
- GO:0046772, virus budding from outer nuclear membrane during viral capsid envelopment
- GO:0046797, viral procapsid maturation
- GO:0046801, intracellular transport of viral capsid in host cell
- GO:0046802, egress of viral procapsid from host cell nucleus
- GO:0046805, protein-heme linkage via 1'-L-histidine
- GO:0046807, viral scaffold assembly and maintenance
- GO:0048195, Golgi membrane priming complex assembly
- GO:0048197, Golgi membrane coat protein complex assembly
- GO:0048202, clathrin coating of Golgi vesicle
- GO:0048213, Golgi vesicle prefusion complex stabilization
- GO:0048251, elastic fiber assembly
- GO:0048268, clathrin cage assembly
- GO:0048564, photosystem I assembly
- GO:0051131, chaperone-mediated protein complex assembly
- GO:0051225, spindle assembly
- GO:0051255, spindle midzone assembly
- GO:0051256, spindle midzone assembly involved in mitosis
- GO:0051257, spindle midzone assembly involved in meiosis
- GO:0051259, protein oligomerization
- GO:0051260, protein homooligomerization
- GO:0051262, protein tetramerization
- GO:0051289, protein homotetramerization
- GO:0051290, protein heterotetramerization
- GO:0051291, protein heterooligomerization
- GO:0051292, nuclear pore complex assembly
- GO:0051382, kinetochore assembly
- GO:0051878, lateral element assembly
- GO:0065003, macromolecular complex assembly
- GO:0065004, protein-DNA complex assembly
- GO:0065005, protein-lipid complex assembly
- GO:0065006, protein-carbohydrate complex assembly
New terms in cellular_component ontology (10 new terms)
GO:0000444 GO:0005694 SGD D 1719897 MIS12/MIND type complex
GO:0043234
GO:0000445 GO:0005634 SGD D THO complex part of transcription export complex
GO:0043234
GO:0000446 GO:0005654 SGD D nucleoplasmic THO complex
GO:0043234
GO:0033185 GO:0005622 MAH D dolichol-phosphate-mannose synthase complex
GO:0043234
GO:0033186 GO:0005654 MAH D CAF-1 complex
GO:0043234
GO:0033193 GO:0005694 MAH D Lsd1/2 complex
GO:0043234
GO:0033202 GO:0005622 MAH D DNA helicase complex
GO:0043234
GO:0033203 GO:0005634 MAH D DNA helicase A complex
GO:0043234
GO:0055051 GO:0005623 AI D ATP-binding cassette (ABC) transporter complex, integrated substrate binding
GO:0043234
GO:0055052 GO:0005623 AI D ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
GO:0043234
Term name changes in cellular_component ontology
GO:0008231: repressor ecdysone receptor holocomplex --> repressor ecdysone receptor complex
GO:0008232: activator ecdysone receptor holocomplex --> activator ecdysone receptor complex
GO:0009356: p-aminobenzoate synthetase complex --> aminodeoxychorismate synthase complex
New definitions for cellular_component ontology terms (20 new definitions)
GO:0005892, nicotinic acetylcholine-gated receptor-channel complex
GO:0005943, 1-phosphatidylinositol-4-phosphate kinase, class IA complex
GO:0005944, 1-phosphatidylinositol-4-phosphate kinase, class IB complex
GO:0008231, repressor ecdysone receptor complex
GO:0008232, activator ecdysone receptor complex
GO:0008282, ATP-sensitive potassium channel complex
GO:0009327, NAD(P)+ transhydrogenase complex (AB-specific)
GO:0009355, DNA polymerase V complex
GO:0009356, aminodeoxychorismate synthase complex
GO:0009360, DNA polymerase III complex
GO:0009376, HslUV protease complex
GO:0009379, Holliday junction helicase complex
GO:0009546, plasmodesmatal cytoplasmic sleeve
GO:0009548, plasmodesmatal plasma membrane
GO:0009550, primary plasmodesma
GO:0009551, secondary plasmodesma
GO:0009654, oxygen evolving complex
GO:0017117, single-stranded DNA-dependent ATP-dependent DNA helicase complex
GO:0019907, cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0020036, Maurer's cleft
New term merges in cellular_component ontology
GO:0009572 has been merged into GO:0009510, plasmodesmatal desmotubule
Term movements in cellular_component ontology:
Terms movements under GO Slim term 'intracellular ; GO:0005622'
- GO:0009289, fimbrium
+ GO:0009327, NAD(P)+ transhydrogenase complex (AB-specific)
+ GO:0009356, aminodeoxychorismate synthase complex
+ GO:0009379, Holliday junction helicase complex
+ GO:0016035, zeta DNA polymerase complex
+ GO:0017117, single-stranded DNA-dependent ATP-dependent DNA helicase complex
+ GO:0048476, Holliday junction resolvase complex
Terms movements under GO Slim term 'cell ; GO:0005623'
+ GO:0005943, 1-phosphatidylinositol-4-phosphate kinase, class IA complex
+ GO:0005944, 1-phosphatidylinositol-4-phosphate kinase, class IB complex
+ GO:0009289, fimbrium
Terms movements under GO Slim term 'nucleus ; GO:0005634'
- GO:0017117, single-stranded DNA-dependent ATP-dependent DNA helicase complex
Terms movements under GO Slim term 'nucleoplasm ; GO:0005654'
- GO:0016035, zeta DNA polymerase complex
Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
+ GO:0009376, HslUV protease complex
Terms movements under GO Slim term 'cytoskeleton ; GO:0005856'
- GO:0000817, COMA complex
- GO:0000818, MIND complex
Terms movements under GO Slim term 'unlocalized protein complex ; GO:0005941'
- GO:0005943, 1-phosphatidylinositol-4-phosphate kinase, class IA complex
- GO:0005944, 1-phosphatidylinositol-4-phosphate kinase, class IB complex
- GO:0009327, NAD(P)+ transhydrogenase complex (AB-specific)
- GO:0009356, aminodeoxychorismate synthase complex
- GO:0009376, HslUV protease complex
- GO:0009379, Holliday junction helicase complex
- GO:0048476, Holliday junction resolvase complex
Terms movements under GO Slim term 'organelle ; GO:0043226'
- GO:0009289, fimbrium
+ GO:0016035, zeta DNA polymerase complex
Terms movements under GO Slim term 'protein complex ; GO:0043234'
+ GO:0000235, astral microtubule
+ GO:0000776, kinetochore
+ GO:0000777, condensed chromosome kinetochore
+ GO:0000778, condensed nuclear chromosome kinetochore
+ GO:0000922, spindle pole
+ GO:0000939, inner kinetochore of condensed chromosome
+ GO:0000940, outer kinetochore of condensed chromosome
+ GO:0000941, inner kinetochore of condensed nuclear chromosome
+ GO:0000942, outer kinetochore of condensed nuclear chromosome
+ GO:0005816, spindle pole body
+ GO:0005818, aster
+ GO:0005819, spindle
+ GO:0005821, intermediate layer of spindle pole body
+ GO:0005822, inner plaque of spindle pole body
+ GO:0005823, central plaque of spindle pole body
+ GO:0005824, outer plaque of spindle pole body
+ GO:0005825, half bridge of spindle pole body
+ GO:0005827, polar microtubule
+ GO:0005828, kinetochore microtubule
+ GO:0005876, spindle microtubule
+ GO:0005943, 1-phosphatidylinositol-4-phosphate kinase, class IA complex
+ GO:0005944, 1-phosphatidylinositol-4-phosphate kinase, class IB complex
+ GO:0009327, NAD(P)+ transhydrogenase complex (AB-specific)
+ GO:0009356, aminodeoxychorismate synthase complex
+ GO:0009376, HslUV protease complex
+ GO:0009379, Holliday junction helicase complex
+ GO:0031616, spindle pole centrosome
+ GO:0032117, horsetail-astral microtubule array
+ GO:0048476, Holliday junction resolvase complex
+ GO:0051233, spindle midzone
New terms in molecular_function ontology (22 new terms)
GO:0010427 GO:0005488 TAIR D abscisic acid binding activity
GO:0010428 GO:0000166 TAIR D methyl-CpNpG binding
GO:0010429 GO:0000166 TAIR D methyl-CpNpN binding
GO:0033187 GO:0016301 MAH D inositol pyrophosphate synthase activity
GO:0033188 GO:0016740 MAH D sphingomyelin synthase activity
GO:0033190 GO:0003824 MAH D solanapyrone synthase activity
GO:0033191 GO:0016740 MAH D macrophomate synthase activity
GO:0033192 GO:0004721 MAH D calmodulin-dependent protein phosphatase activity
GO:0033196 GO:0003824 MAH D tryparedoxin peroxidase activity
GO:0016209
GO:0033199 GO:0016301 MAH D inositol heptakisphosphate 4-kinase activity
GO:0033200 GO:0016301 MAH D inositol heptakisphosphate 5-kinase activity
GO:0033201 GO:0016740 MAH D alpha-1,4-glucan synthase activity
GO:0033204 GO:0003723 MAH D ribonuclease P RNA binding
GO:0033207 GO:0016740 MAH D beta-1,4-N-acetylgalactosaminyltransferase activity
GO:0033208 GO:0016740 MAH D UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity
GO:0033218 GO:0005488 MAH D amide binding
GO:0033219 GO:0005488 MAH D urea binding
GO:0033220 GO:0005215 MAH D amide-transporting ATPase activity
GO:0016787
GO:0033221 GO:0005215 MAH D urea-transporting ATPase activity
GO:0016787
GO:0033222 GO:0030246 MAH D xylose binding
GO:0043731 GO:0003824 JL D 6-hydroxynicotinate 3-monooxygenase activity
GO:0043732 GO:0003824 JL D 6-hydroxynicotinate dehydrogenase activity
Term name changes in molecular_function ontology
GO:0004683: calmodulin regulated protein kinase activity --> calmodulin-dependent protein kinase activity
GO:0008913: lauroyl transferase activity --> lauroyltransferase activity
GO:0008932: murein lytic endotransglycosylase E activity --> lytic endotransglycosylase activity
GO:0008933: murein transglycosylase B activity --> lytic transglycosylase activity
New definitions for molecular_function ontology terms (6 new definitions)
GO:0004683, calmodulin-dependent protein kinase activity
GO:0008262, importin-alpha export receptor activity
GO:0008932, lytic endotransglycosylase activity
GO:0008933, lytic transglycosylase activity
GO:0009377, HslUV protease activity
GO:0009931, calcium-dependent protein serine/threonine kinase activity
New term merges in molecular_function ontology
GO:0004684 has been merged into GO:0004683, calmodulin-dependent protein kinase activity
GO:0004685 has been merged into GO:0004683, calmodulin-dependent protein kinase activity
GO:0004688 has been merged into GO:0004683, calmodulin-dependent protein kinase activity
Term movements in molecular_function ontology:
Terms movements under GO Slim term 'transferase activity ; GO:0016740'
+ GO:0008933, lytic transglycosylase activity
Terms movements under GO Slim term 'hydrolase activity ; GO:0016787'
- GO:0008933, lytic transglycosylase activity
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
1165228 Fixed Holliday junction resolvase complex
1455372 Works For Me gene product in MF (importin-alpha export ..)
1469444 Accepted new signalling terms for kegg orthology2go
1491013 Fixed cytokinesis (sorry)
1558919 Accepted ntr: DNA helicase A complex
1575960 Rejected Inhibtion/aggregation of beta-amyloid peptide
1633338 Accepted 1,4-N-acetylgalactosamine transferase activity.
1645470 Fixed naming of terms describing activation
1657892 Accepted New term: MIS12 complex
1705071 Accepted ntr: Lsd1/2 complex
1706567 None inner ear development rework
1708213 Works For Me chromatin silencing
1708351 Accepted nadd synonym SHREC complex/NuRD complex
1708418 Accepted NTR: DNA methylation on cytosine at CG residues
1708446 Accepted NTR: methyl-CpNpG binding
1708896 Accepted NTR: abscisic acid binding activity
1710142 Accepted NTR: Dolichol-phosphate-mannose synthase
1710172 Accepted new term: inositol pyrophosphate synthase activity
1710545 Accepted Add to definition of GO:0005946
1710724 Fixed large decrease in complex annotations
1710816 Fixed heterochromatin defs
1710878 Accepted NTR: fatty acid omega-oxidation
1711305 Accepted NTR: Sphingomyelin synthase activity
1711453 Accepted response to vitamin A
1711493 Accepted NTR: seed maturation
1711772 Accepted NTR: enzyme: solanapyrone synthase activity
1711844 Accepted NTR: enzyme: macrophomate synthase activity
1711867 None NTR: craniofacial development
1711911 Fixed obsolete GO:0006755
1712052 Accepted Term moves: lauroyl transferase activity etc.
1712058 Fixed error in def (palmitoyltransferase activity, GO:0016409)
1712695 Accepted calmodulin regulated protein phosphatase activity
1712705 Accepted CAF-1 = chromatin assembly factor 1
1714122 Accepted poly(A) tail shortening
1714240 Accepted ntr: response to alkyl hydroperoxide
1714858 Fixed glycolysis def
1714863 Fixed L-malate dehydrogenase parent
1715146 Accepted response to vitamin E
1715155 Accepted response to ATP
1715368 Accepted new terms: IP7 kinase activities
1715584 Works For Me ntr (I think): daf-2 receptor signaling pathway
1715601 Accepted ntr: alpha-1,4-glucan synthase activity + tweaks
1717390 Fixed neural plate development NOT part of NP morph.
1718700 None NTR: reg of growth hormone secretion
1718869 Accepted ntr: RNA P RNA binding
1719524 Accepted ntr/ transcription ...iron deficiency
1719594 Accepted ntr: urea binding and ABC transporter
1719606 Accepted ntr: xylose binding
1719890 Accepted DASH complex tweak comment
1720004 None NTR:pituitary cell types
1720142 Accepted ntr: 2-aminoethylphosphonate transport terms
1720157 Accepted ntr: dsRNA transport
1720187 Accepted ntr: reg of sumoylation
1721422 None NTR:prepulse inhibition
1722202 None Incorrect parent urgent
1722719 None typo primary cell septum diassembly
1722869 None move fimbrium
1723513 None pregnancy and partuition
1723591 Accepted ntr: carbohydrate export
1723697 None GO:0006926-virus-infected cell apoptosis
1723705 None GO:0006948-induction by virus of cell-cell fusion in host
1725863 None NTR: cell tail
1727948 Duplicate NTR: farnesoic acid carboxyl-O-methyltransferase
856170 Fixed additional realtionship THO complex
Statistics:
biological_process: 14008 terms, 98.7% defined (13826 terms defined)
cellular_component: 2080 terms, 99.5% defined (2070 terms defined)
molecular_function: 8142 terms, 93.1% defined (7582 terms defined)
Total: 24230 terms, 96.9% defined (23478 terms defined)
Term errors
none