GO Monthly Release Notes for July 2006
========================
Generated on Wed Aug 2 14:29:55 2006
Files used:
gene_ontology.obo
OLD: version 4.18, 30:06:2006 17:04
NEW: version 4.32, 31:07:2006 14:53
goslim_generic
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in biological_process ontology (12 new terms)
GO:0002074 GO:0007275 MGI D extraocular skeletal muscle development (sensu Mammalia)
GO:0002075 GO:0007275 MGI D somitomeric trunk muscle development (sensu Mammalia)
GO:0002076 GO:0007582 MGI D osteoblast development
GO:0030154
GO:0002077 GO:0000003 MGI D 1521229 acrosome matrix dispersal
GO:0006810
GO:0019538
GO:0002078 GO:0000003 MGI D 1521229 membrane fusion during acrosome reaction
GO:0006810
GO:0016043
GO:0032118 GO:0007010 MAH D 1490351 horsetail-astral microtubule organization and biogenesis
GO:0032119 GO:0019725 MAH D 1499587 sequestering of zinc ion
GO:0032120 GO:0000003 MAH D 1497433 prospore membrane formation
GO:0007582
GO:0030154
GO:0032121 GO:0007049 MAH D 1490244 attachment of telomeres to spindle pole body
GO:0043666 GO:0050789 JL D 1515374 regulation of phosphoprotein phosphatase activity
GO:0048844 GO:0009653 JIC D 1530067 artery morphogenesis
GO:0048845 GO:0009653 JIC D 1530067 venous blood vessel morphogenesis
Term name changes in biological_process ontology
GO:0000748: conjugation without cellular fusion --> conjugation with mutual genetic exchange
GO:0002072: optic cup morphogenesis (sensu mammalia) --> optic cup morphogenesis (sensu Mammalia)
GO:0002073: retina development (sensu mammalia) --> retina development (sensu Mammalia)
GO:0031322: forespore-specific spindle pole body modification --> prospore-specific spindle pole body modification
New definitions for biological_process ontology terms (1 new definitions)
GO:0007339, binding of sperm to zona pellucida
Term movements in biological_process ontology:
Terms movements under GO Slim term 'reproduction ; GO:0000003'
- GO:0000746, conjugation
- GO:0000762, pheromone-induced unidirectional conjugation
- GO:0000763, cellular morphogenesis during unidirectional conjugation
- GO:0000764, cellular morphogenesis during pheromone-induced unidirectional conjugation
- GO:0000765, response to pheromone during pheromone-induced unidirectional conjugation
- GO:0000766, adaptation to pheromone during pheromone-induced unidirectional conjugation
- GO:0009291, unidirectional conjugation
- GO:0031135, negative regulation of conjugation
- GO:0031136, positive regulation of conjugation
- GO:0046999, regulation of conjugation
Terms movements under GO Slim term 'lipid metabolism ; GO:0006629'
+ GO:0042572, retinol metabolism
Terms movements under GO Slim term 'transport ; GO:0006810'
+ GO:0007340, acrosome reaction
Terms movements under GO Slim term 'metabolism ; GO:0008152'
- GO:0042572, retinol metabolism
New terms in cellular_component ontology (26 new terms)
GO:0002079 GO:0005764 MGI D 1521229 inner acrosomal membrane
GO:0002080 GO:0005764 MGI D 1521229 acrosomal membrane
GO:0002081 GO:0005764 MGI D 1521229 outer acrosomal membrane
GO:0032116 GO:0005634 MAH D 1494199 cohesin loading complex
GO:0043234
GO:0032117 GO:0005856 MAH D 1490351 horsetail-astral microtubule array
GO:0043658 GO:0005576 JL D 1504668 host symbiosome
GO:0043659 GO:0016023 JL D 1504668 symbiosome
GO:0043660 GO:0016023 JL D 1504668 bacteroid-containing symbiosome
GO:0043661 GO:0016023 JL D 1504668 peribacteroid membrane
GO:0043662 GO:0016023 JL D 1504668 peribacteroid fluid
GO:0043663 GO:0005576 JL D 1504668 host bacteroid-containing symbiosome
GO:0043664 GO:0005576 JL D 1504668 host peribacteroid membrane
GO:0005737
GO:0043665 GO:0005576 JL D 1504668 host peribacteroid fluid
GO:0005737
GO:0043667 GO:0005575 JL D 1490469 pollen wall
GO:0043668 GO:0005575 JL D 1490469 exine
GO:0043669 GO:0005575 JL D 1490469 ectexine
GO:0043670 GO:0005575 JL D 1490469 foot layer
GO:0043671 GO:0005575 JL D 1490469 endexine
GO:0043672 GO:0005575 JL D 1490469 nexine
GO:0043673 GO:0005575 JL D 1490469 sexine
GO:0043674 GO:0005575 JL D 1490469 columella
GO:0043675 GO:0005575 JL D 1490469 sculpture element
GO:0043676 GO:0005575 JL D 1490469 tectum
GO:0043677 GO:0005575 JL D 1490469 germination pore
GO:0043678 GO:0005575 JL D 1490469 intine
GO:0043679 GO:0005623 JL D 1472273 nerve terminal
Term name changes in cellular_component ontology
GO:0005904: lipid bilayer --> plasma membrane lipid bilayer
Term movements in cellular_component ontology:
Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
+ GO:0031500, Tea1 cell-end complex
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
1325781 Accepted term name changes - development terms [none]
1472273 Accepted nerve terminal as PARTOF GO:0043005 GO:0043679
1489900 Fixed position of "intronic snoRNA processing ; GO:0031070" [none]
1490244 Accepted ntr: meiotic tetheringof telomeres to the spindle pole body GO:0032121
1490351 Accepted ntr: horsetail-astral array GO:0032117 GO:0032118
1493291 Accepted new parentage and definition tweak [none]
1494199 Accepted ntr: cohesin loading complex GO:0032116
1497433 Accepted mp: forespore-specific spindle pole body modification GO:0032120
1497512 Out of Date What is in a GO identifier? [none]
1498958 Accepted retinoid/retinal/retinol metabolism: parentage suggestion [none]
1499587 Accepted EASY:sequestering of zinc ion GO:0032119
1504668 Accepted symbiosome and peribacteroid GO:0043655 GO:0043656 GO:0043657 GO:0043658 GO:0043659 GO:0043660 GO:0043661 GO:0043662 GO:0043663 GO:0043664 GO:0043665
1511535 Accepted pituitary gland development [none]
1514460 Fixed lipid bilayer [none]
1515106 Fixed GO:0005759 definition needs correction [none]
1515374 Accepted ntr: regulation of phosphoprotein phosphatase activity GO:0043666
1516240 Accepted add parent GO:0031500 : Tea1 cell-end complex [none]
1517795 Fixed error in GO:0008495 synonyms [none]
1521229 Accepted inner acrosomal membrane GO:0002077 GO:0002079 GO:0002080 GO:0002081
1530067 Accepted artery and vein morphogenesis terms GO:0048844 GO:0048845
Statistics:
biological_process: 11086 terms, 98.0% defined (10869 terms defined)
cellular_component: 1899 terms, 96.7% defined (1836 terms defined)
molecular_function: 7960 terms, 92.2% defined (7338 terms defined)
Total: 20945 terms, 95.7% defined (20043 terms defined)
Term errors
none