GO Monthly Release Notes for April 2006
========================
Generated on Thu May 4 08:36:41 2006
Files used:
gene_ontology.obo
OLD: version 3.1415, 28:03:2006 16:38
NEW: version 3.1441, 28:04:2006 18:11
goslim_generic
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in biological_process ontology (63 new terms)
GO:0002047 GO:0009058 MGI D phenazine biosynthesis
GO:0002048 GO:0008152 MGI D pyoverdine metabolism
GO:0002049 GO:0009058 MGI D pyoverdine biosynthesis
GO:0002050 GO:0009056 MGI D pyoverdine catabolism
GO:0010263 GO:0006629 TAIR D 1438327 tricyclic triterpenoid biosynthesis
GO:0009058
GO:0019748
GO:0010264 GO:0009058 TAIR D 1438327 phytate biosynthesis
GO:0010265 GO:0019538 TAIR D 1438327 SCF complex assembly
GO:0010266 GO:0007154 TAIR D 1438327 response to vitamin B1
GO:0007582
GO:0009605
GO:0009628
GO:0010267 GO:0006139 TAIR D 1438327 RNA interference, production of ta-siRNAs
GO:0009628
GO:0040029
GO:0010268 GO:0007582 TAIR D 1438327 brassinosteroid homeostasis
GO:0010269 GO:0009628 TAIR D 1438327 response to selenium ion
GO:0010270 GO:0006091 TAIR D 1438327 photosystem II oxygen evolving complex assembly
GO:0019538
GO:0010271 GO:0009056 TAIR D 1438327 regulation of chlorophyll catabolism
GO:0019748
GO:0010272 GO:0009628 TAIR D 1438327 response to silver ion
GO:0010273 GO:0009628 TAIR D 1438327 detoxification of copper ion
GO:0010274 GO:0007582 TAIR D 1438327 hydrotropism
GO:0009605
GO:0010275 GO:0019538 TAIR D 1438327 NAD(P)H dehydrogenase complex assembly
GO:0032023 GO:0006464 MAH D 1460757 trypsinogen activation
GO:0032024 GO:0007267 MAH D 1463511 positive regulation of insulin secretion
GO:0007582
GO:0050789
GO:0032025 GO:0009628 MAH D 1464311 response to cobalt ion
GO:0032026 GO:0009628 MAH D 1464311 response to magnesium ion
GO:0032042 GO:0006259 MAH D 1469197 mitochondrial DNA metabolism
GO:0007005
GO:0032043 GO:0006259 MAH D 1469197 mitochondrial DNA catabolism
GO:0007005
GO:0009056
GO:0032048 GO:0006629 MAH D 1474194 cardiolipin metabolism
GO:0032049 GO:0006629 MAH D 1474194 cardiolipin biosynthesis
GO:0043627 GO:0009628 JL D 1476047 response to estrogen stimulus
GO:0009719
GO:0043628 GO:0006139 JL D 1435926 ncRNA 3'-end processing
GO:0043629 GO:0006139 JL D 1435926 ncRNA polyadenylation
GO:0043630 GO:0006139 JL D 1435926 ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolism
GO:0009056
GO:0043631 GO:0006139 JL D 1435926 RNA polyadenylation
GO:0043632 GO:0009056 JL D modification-dependent macromolecule catabolism
GO:0043633 GO:0006139 JL D modification-dependent RNA catabolism
GO:0009056
GO:0043634 GO:0006139 JL D polyadenylation-dependent ncRNA catabolism
GO:0009056
GO:0043635 GO:0009056 JL D 1469441 methylnaphthalene catabolism
GO:0009628
GO:0043636 GO:0009056 JL D 1469441 bisphenol A catabolism
GO:0009628
GO:0043637 GO:0006139 JL D 1469441 puromycin metabolism
GO:0043638 GO:0006139 JL D 1469441 puromycin biosynthesis
GO:0009058
GO:0043639 GO:0008152 JL D 1469441 benzoate catabolism
GO:0009628
GO:0043640 GO:0008152 JL D 1469441 benzoate catabolism via hydroxylation
GO:0009628
GO:0043641 GO:0019748 JL D 1469441 novobiocin metabolism
GO:0043642 GO:0009058 JL D 1469441 novobiocin biosynthesis
GO:0019748
GO:0048800 GO:0009653 JIC D 1101748 antennal morphogenesis
GO:0048801 GO:0009653 JIC D 1101748 antennal joint morphogenesis
GO:0048802 GO:0009653 JIC D 1101748 notum morphogenesis
GO:0048803 GO:0009653 JIC D 1101748 male genitalia morphogenesis (sensu Endopterygota)
GO:0048804 GO:0009653 JIC D 1101748 female genitalia morphogenesis (sensu Endopterygota)
GO:0048805 GO:0009653 JIC D 1101748 genitalia morphogenesis (sensu Endopterygota)
GO:0048806 GO:0007275 JIC D 1101748 genitalia development
GO:0048807 GO:0009653 JIC D 1101748 female genitalia morphogenesis
GO:0048808 GO:0009653 JIC D 1101748 male genitalia morphogenesis
GO:0051972 GO:0050789 AI D 1449136 regulation of telomerase activity
GO:0051973 GO:0050789 AI D 1449136 positive regulation of telomerase activity
GO:0051974 GO:0050789 AI D 1449136 negative regulation of telomerase activity
GO:0051975 GO:0006519 AI D 1468667 lysine biosynthesis via alpha-aminoadipate and saccharopine
GO:0009058
GO:0051976 GO:0006519 AI D 1468667 lysine biosynthesis via alpha-aminoadipate and N2-acetyl-alpha-aminoadipate
GO:0009058
GO:0051977 GO:0006810 AI D 1473681 lysophospholipid transport
GO:0051979 GO:0005975 AI D 1473725 alginic acid acetylation
GO:0051983 GO:0007582 AI D 1464783 regulation of chromosome segregation
GO:0050789
GO:0051984 GO:0007582 AI D 1464783 positive regulation of chromosome segregation
GO:0050789
GO:0051985 GO:0007582 AI D 1464783 negative regulation of chromosome segregation
GO:0050789
GO:0051986 GO:0007582 AI D 1464783 negative regulation of attachment of spindle microtubules to kinetochore
GO:0050789
GO:0051987 GO:0007582 AI D 1464783 positive regulation of attachment of spindle microtubules to kinetochore
GO:0050789
GO:0051988 GO:0007582 AI D 1464783 regulation of attachment of spindle microtubules to kinetochore
GO:0050789
Term name changes in biological_process ontology
GO:0006303: double-strand break repair via nonhomologous end-joining --> double-strand break repair via nonhomologous end joining
GO:0007469: antennal morphogenesis --> antennal development
GO:0007477: notum morphogenesis --> notum development
GO:0007484: genitalia morphogenesis (sensu Endopterygota) --> genitalia development (sensu Endopterygota)
GO:0007485: male genitalia morphogenesis (sensu Endopterygota) --> male genitalia development (sensu Endopterygota)
GO:0007486: female genitalia morphogenesis (sensu Endopterygota) --> female genitalia development (sensu Endopterygota)
GO:0010128: anaerobic benzoate catabolism --> benzoate catabolism via CoA ligation
GO:0030539: male genitalia morphogenesis --> male genitalia development
GO:0030540: female genitalia morphogenesis --> female genitalia development
GO:0048098: antennal joint morphogenesis --> antennal joint development
Term movements in biological_process ontology:
Terms movements under GO Slim term 'mitochondrion organization and biogenesis ; GO:0007005'
+ GO:0006264, mitochondrial DNA replication
Terms movements under GO Slim term 'development ; GO:0007275'
+ GO:0007477, notum development
+ GO:0007484, genitalia development (sensu Endopterygota)
+ GO:0007485, male genitalia development (sensu Endopterygota)
+ GO:0007486, female genitalia development (sensu Endopterygota)
+ GO:0030539, male genitalia development
+ GO:0030540, female genitalia development
Terms movements under GO Slim term 'morphogenesis ; GO:0009653'
- GO:0007477, notum development
- GO:0007484, genitalia development (sensu Endopterygota)
- GO:0007485, male genitalia development (sensu Endopterygota)
- GO:0007486, female genitalia development (sensu Endopterygota)
- GO:0030539, male genitalia development
- GO:0030540, female genitalia development
New terms in cellular_component ontology (7 new terms)
GO:0014069 GO:0005856 EF D 1461376 postsynaptic density
GO:0032039 GO:0005654 MAH D 1455328 integrator complex
GO:0043234
GO:0032040 GO:0005730 MAH D 1450841 small subunit processome
GO:0043234
GO:0032044 GO:0005654 MAH D 1427382 DSIF complex
GO:0043234
GO:0032045 GO:0005622 MAH D 1470632 guanyl-nucleotide exchange factor complex
GO:0043234
GO:0032046 GO:0005773 MAH D 1472308 micropexophagy-specific membrane apparatus
GO:0032047 GO:0005737 MAH D 1467708 mitosome
GO:0043226
New terms in molecular_function ontology (19 new terms)
GO:0032027 GO:0008092 MAH D 1445964 myosin light chain binding
GO:0032028 GO:0008092 MAH D 1445964 myosin head/neck binding
GO:0032029 GO:0008092 MAH D 1445964 myosin tail binding
GO:0032030 GO:0008092 MAH D 1445964 myosin I light chain binding
GO:0032031 GO:0008092 MAH D 1445964 myosin I head/neck binding
GO:0032032 GO:0008092 MAH D 1445964 myosin I tail binding
GO:0032033 GO:0008092 MAH D 1445964 myosin II light chain binding
GO:0032034 GO:0008092 MAH D 1445964 myosin II head/neck binding
GO:0032035 GO:0008092 MAH D 1445964 myosin II tail binding
GO:0032036 GO:0008092 MAH D 1445964 myosin heavy chain binding
GO:0032037 GO:0008092 MAH D 1445964 myosin I heavy chain binding
GO:0032038 GO:0008092 MAH D 1445964 myosin II heavy chain binding
GO:0032041 GO:0016787 MAH D 1449995 NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0051978 GO:0005215 AI D 1473681 lysophospholipid transporter activity
GO:0051980 GO:0005215 AI D 1472664 iron-nicotianamine transporter activity
GO:0051981 GO:0005215 AI D 1472664 copper chelate transporter activity
GO:0051982 GO:0005215 AI D 1472664 copper-nicotianamine transporter activity
GO:0051989 GO:0003824 AI D 1474222 coproporphyrinogen dehydrogenase activity
GO:0051990 GO:0003824 AI D 1464300 (R)-2-hydroxyglutarate dehydrogenase activity
New definitions for molecular_function ontology terms (1 new definitions)
GO:0017132, cyclic nucleotide-dependent guanyl-nucleotide exchange factor activity
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
1025157 Works For Me the new look Cell Cycle node GO:0050000 GO:0051227 GO:0051235 GO:0051247 GO:0051292 GO:0051293 GO:0051294 GO:0051295 GO:0051296 GO:0051297 GO:0051298 GO:0051299 GO:0051300 GO:0051301 GO:0051302 GO:0051303 GO:0051304 GO:0051305 GO:0051306 GO:0051307 GO:0051308 GO:0051309 GO:0051310 GO:0051311 GO:0051312 GO:0051313 GO:0051314 GO:0051315 GO:0051316 GO:0051317 GO:0051318 GO:0051319 GO:0051320 GO:0051321 GO:0051322 GO:0051323 GO:0051324 GO:0051325 GO:0051326 GO:0051327 GO:0051328 GO:0051329 GO:0051330 GO:0051331 GO:0051332 GO:0051337
1427382 Fixed DISF and FACT elongation factor complexes GO:0032044
1428548 Accepted move pigment cell terms [none]
1435926 Works For Me ntr : rRNA polyadenylation and various GO:0043628 GO:0043629 GO:0043630 GO:0043631
1438327 None TAIR process terms -February, 2006 GO:0010263 GO:0010264 GO:0010265 GO:0010266 GO:0010267 GO:0010268 GO:0010269 GO:0010270 GO:0010271 GO:0010272 GO:0010273 GO:0010274 GO:0010275
1445964 Accepted myosin... binding terms GO:0032027 GO:0032028 GO:0032029 GO:0032030 GO:0032031 GO:0032032 GO:0032033 GO:0032034 GO:0032035 GO:0032036 GO:0032037 GO:0032038
1446726 Works For Me def of GO:0043625 "delta DNA polymerase complex" [none]
1449995 Accepted NTR:NAD-dep. histone deacetylase activity (H3-K14 specific) GO:0032041
1450841 Accepted ntr: small subunit processome GO:0032040
1455328 Accepted NTR: Integrator complex GO:0032039
1460757 Accepted New term: trypsinogen activation GO:0032023
1461376 Accepted post synaptic density GO:0014069
1462226 Fixed GO: 5085 :guanyl-nucleotide exchange factor activity [none]
1463511 Accepted positive regulation of insulin secretion GO:0032024
1464300 Accepted children of GO:0047545 GO:0051990
1464311 Accepted NTR: response to cobalt ion GO:0032025 GO:0032026
1464783 Accepted Regulation child term for GO:0008608 GO:0051983 GO:0051984 GO:0051985 GO:0051986 GO:0051987 GO:0051988
1467708 Accepted mitosome GO:0032047
1468581 Works For Me Mitochondrial Genome [none]
1468667 Accepted Add new MetaCyc pathways for lysine biosynthesis GO:0051975 GO:0051976
1468696 Accepted mp:?sphingolipid delta-4 desaturase activity [none]
1469197 Accepted mtDNA sythesis, degradation and mutation GO:0032042 GO:0032043
1469698 Fixed definition: transcription factor activity [none]
1469944 Fixed synonym type and def for GO:0005503 [none]
1470485 Accepted synonym for GO:6303 [none]
1470632 Accepted NTR: Guanyl-nucleotide exchange factor complex GO:0032045
1472308 Accepted micropexophagic apparatus GO:0032046
1472381 Works For Me secretory vesicle [none]
1472538 Works For Me Toll signalling pathway= Toll-like? GO:0002220 GO:0002224
1472664 Accepted iron-nicotinamine transporter activity GO:0051980 GO:0051981 GO:0051982
1473287 Duplicate NTR: DSIF complex & incorrect syn for FACT complex [none]
1473681 Accepted ntr: lysophospholipid transport(er) GO:0051977 GO:0051978
1473725 Accepted ntr: alginic acid acetylation GO:0051979
1474194 Accepted ntr: cardiolipin biosynthesis GO:0032048 GO:0032049
1474222 Accepted ntr: coproporphyrinogen dehydrogenase GO:0051989
1476047 Accepted TEST:response to estrogen stimulus GO:0043627
1476504 Accepted synonym request; mitochondrial signaling pathway, GO:31930 [none]
1476809 Rejected imaginal disc development [none]
1477659 Works For Me poss TVP: replicative cell aging [none]
1478350 Works For Me ? identical protein binding [none]
535294 Out of Date unlocalized enzyme complexes [none]
Statistics:
biological_process: 10957 terms, 98.0% defined (10741 terms defined)
cellular_component: 1822 terms, 96.3% defined (1754 terms defined)
molecular_function: 7946 terms, 92.1% defined (7322 terms defined)
Total: 20725 terms, 95.6% defined (19817 terms defined)
Term errors
none