GO Monthly Release Notes for July 2004
========================
Generated on Mon Aug 9 15:57:57 2004
Files used:
component old: 3.69 new: 3.91
function old: 3.69 new: 3.91
process old: 3.69 new: 3.91
definitions old: 3.69 new: 3.91
GO Slim: Generic.0208
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in component ontology (21 new terms)
GO:0000506 GO:0005783 SGD D 968383 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
GO:0001411 GO:0005623 SGD D 981694 hyphal tip
GO:0030964 GO:0005623 MAH D NADH dehydrogenase complex (quinone)
GO:0030966 GO:0005622 MAH D NADH dehydrogenase complex (quinone) (sensu Bacteria)
GO:0005623
GO:0005886
GO:0043186 GO:0005737 JL D 876432 P granule
GO:0043187 GO:0005623 JL D 979611 septum surface
GO:0043188 GO:0005618 JL D 979611 septum edging
GO:0043189 GO:0005654 JL D 845102 H4/H2A histone acetyltransferase complex
GO:0043190 GO:0005623 JL D 932425 ATP-binding cassette (ABC) transporter complex
GO:0043191 GO:0005623 JL D 932425 ATP-binding cassette (ABC) transporter complex (sensu Eukarya)
GO:0043192 GO:0005623 JL D 932425 ATP-binding cassette (ABC) transporter complex (sensu Bacteria and Archaea)
GO:0043194 GO:0005623 JL D 957039 initial segment
GO:0043195 GO:0005623 JL D 957039 terminal button
GO:0043196 GO:0005623 JL D 957039 varicosity
GO:0043197 GO:0005623 JL D 957044 dendritic spine
GO:0043198 GO:0005623 JL D 957044 dendritic shaft
GO:0048475 GO:0005623 JIC D 987826 coated membrane
GO:0048476 GO:0005941 JIC D 989702 Holliday junction resolvase complex
GO:0048492 GO:0005737 JIC D ribulose bisphosphate carboxylase complex
GO:0048493 GO:0005737 JIC D ribulose bisphosphate carboxylase complex (sensu Cyanobacteria)
GO:0005886
GO:0009579
GO:0016023
GO:0048494 GO:0005737 JIC D ribulose bisphosphate carboxylase complex (sensu Proteobacteria)
GO:0016023
Term name changes in component ontology
GO:0005601: classical-complement pathway C3/C5 convertase complex --> classical-complement-pathway C3/C5 convertase complex
GO:0005889: hydrogen/potassium-exchanging ATPase complex --> hydrogen:potassium-exchanging ATPase complex
GO:0005890: sodium/potassium-exchanging ATPase complex --> sodium:potassium-exchanging ATPase complex
GO:0005954: calcium/calmodulin-dependent protein kinase complex --> calcium- and calmodulin-dependent protein kinase complex
GO:0009573: ribulose bisphosphate carboxylase complex --> ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
GO:0030062: TCA cycle enzyme complex (sensu Eukarya) --> tricarboxylic acid cycle enzyme complex (sensu Eukarya)
GO:0045239: TCA cycle enzyme complex --> tricarboxylic acid cycle enzyme complex
GO:0045246: TCA cycle enzyme complex (sensu Bacteria) --> tricarboxylic acid cycle enzyme complex (sensu Bacteria)
New definitions for component ontology terms (14 new definitions)
GO:0005656, pre-replicative complex
GO:0005658, alpha DNA polymerase:primase complex
GO:0005663, DNA replication factor C complex
GO:0005947, alpha-ketoglutarate dehydrogenase complex (sensu Eukarya)
GO:0005962, isocitrate dehydrogenase complex (NAD+) (sensu Eukarya)
GO:0009573, ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
GO:0009840, chloroplastic endopeptidase Clp complex
GO:0009841, mitochondrial endopeptidase Clp complex
GO:0045240, alpha-ketoglutarate dehydrogenase complex
GO:0045241, alpha-ketoglutarate dehydrogenase complex (sensu Bacteria)
GO:0045242, isocitrate dehydrogenase complex (NAD+)
GO:0045243, isocitrate dehydrogenase complex (NAD+) (sensu Bacteria)
GO:0045279, NADH dehydrogenase complex (ubiquinone)
GO:0045280, NADH dehydrogenase complex (ubiquinone) (sensu Bacteria)
Term movements in component ontology:
Terms movements under GO Slim term 'cell ; GO:0005623'
+ GO:0030117, membrane coat
+ GO:0030118, clathrin coat
+ GO:0030119, membrane coat adaptor complex
+ GO:0030120, vesicle coat
+ GO:0030121, AP-1 adaptor complex
+ GO:0030122, AP-2 adaptor complex
+ GO:0030123, AP-3 adaptor complex
+ GO:0030124, AP-4 adaptor complex
+ GO:0030125, clathrin vesicle coat
+ GO:0030126, COPI vesicle coat
+ GO:0030127, COPII vesicle coat
+ GO:0030128, clathrin coat of endocytic vesicle
+ GO:0030129, clathrin coat of synaptic vesicle
+ GO:0030130, clathrin coat of trans-Golgi network vesicle
+ GO:0030131, clathrin adaptor complex
+ GO:0030132, clathrin coat of coated pit
+ GO:0045279, NADH dehydrogenase complex (ubiquinone)
+ GO:0045280, NADH dehydrogenase complex (ubiquinone) (sensu Bacteria)
Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
+ GO:0009573, ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
Terms movements under GO Slim term 'cytoplasmic vesicle ; GO:0016023'
+ GO:0030075, thylakoid (sensu Cyanobacteria)
+ GO:0030089, phycobilisome
+ GO:0030094, photosystem I (sensu Cyanobacteria)
+ GO:0030096, photosystem II (sensu Cyanobacteria)
New terms in function ontology (22 new terms)
GO:0001882 GO:0005488 MGI D 998107 nucleoside binding
GO:0001883 GO:0005488 MGI D 998107 purine nucleoside binding
GO:0001884 GO:0005488 MGI D 998107 pyrmidine nucleoside binding
GO:0030971 GO:0005102 MAH D receptor tyrosine kinase binding
GO:0035197 GO:0003723 FB D 982645 siRNA binding
GO:0035198 GO:0003723 FB D 982645 miRNA binding
GO:0043167 GO:0005488 JL D ion binding
GO:0043168 GO:0005488 JL D anion binding
GO:0043169 GO:0005488 JL D cation binding
GO:0043175 GO:0005515 JL D RNA polymerase core enzyme binding
GO:0043176 GO:0005488 JL D amine binding
GO:0043177 GO:0005488 JL D organic acid binding
GO:0043178 GO:0005488 JL D alcohol binding
GO:0043183 GO:0005102 JL D 965473 vascular endothelial growth factor receptor 1 binding
GO:0043184 GO:0005102 JL D 965473 vascular endothelial growth factor receptor 2 binding
GO:0043185 GO:0005102 JL D 965473 vascular endothelial growth factor receptor 3 binding
GO:0043199 GO:0005488 JL D 995498 sulfate binding
GO:0048487 GO:0008092 JIC D 994715 beta-tubulin binding
GO:0051082 GO:0005515 AI D 979615 unfolded protein binding
GO:0051087 GO:0005515 AI D 869662 chaperone binding
GO:0051108 GO:0003824 AI D carnitine-CoA ligase activity
GO:0051109 GO:0003824 AI D crotonobetaine-CoA ligase activity
New obsoletions in function ontology
GO:0000005, ribosomal chaperone activity: refers to a class of gene products rather than a molecular function.
GO:0003754, chaperone activity: represents a class of gene products rather than a molecular function.
GO:0003759, glycoprotein-specific chaperone activity: represents a class of gene products rather than a molecular function.
GO:0003762, histone-specific chaperone activity: represents a class of gene products rather than a molecular function.
GO:0003767, co-chaperone activity: represents a class of gene products rather than a molecular function.
GO:0003772, co-chaperonin activity: represents a class of gene products rather than a molecular function.
GO:0003773, heat shock protein activity: represents a class of gene products rather than a molecular function.
GO:0004009, ATP-binding cassette (ABC) transporter activity: ABC transporters are a protein family rather than a functional grouping.
GO:0005541, acyl-CoA or acyl binding: was replaced by more appropriate terms.
GO:0008077, Hsp70/Hsp90 organizing protein activity: represents a specific gene product rather than a molecular function.
GO:0008822, crotonobetaine/carnitine-CoA ligase activity: represents a bifunctional gene product.
GO:0015406, ABC-type uptake permease activity: ABC transporters are a protein family rather than a functional grouping.
GO:0015427, ABC-type efflux porter activity: ABC transporters are a protein family rather than a functional grouping.
GO:0015435, ABC-type efflux permease activity: ABC transporters are a protein family rather than a functional grouping.
GO:0015472, fimbrium-specific chaperone activity: refers to a class of proteins rather than a molecular function.
GO:0016694, bacterial catalase-peroxidase activity: represents a bifunctional gene product.
GO:0017072, tubulin-specific chaperone activity: represents a class of gene products rather than a molecular function.
Term name changes in function ontology
GO:0004428: inositol/phosphatidylinositol kinase activity --> inositol or phosphatidylinositol kinase activity
GO:0004434: inositol/phosphatidylinositol phosphodiesterase activity --> inositol or phosphatidylinositol phosphodiesterase activity
GO:0004437: inositol/phosphatidylinositol phosphatase activity --> inositol or phosphatidylinositol phosphatase activity
GO:0004679: SNF1A/AMP-activated protein kinase activity --> AMP-activated protein kinase activity
GO:0004685: calcium/calmodulin-dependent protein kinase activity --> calcium- and calmodulin-dependent protein kinase activity
GO:0004688: multifunctional calcium/calmodulin regulated protein kinase activity --> multifunctional calcium- and calmodulin-regulated protein kinase activity
GO:0004701: diacylglycerol-activated/phospholipid-dependent protein kinase C activity --> diacylglycerol-activated phospholipid-dependent protein kinase C activity
GO:0004863: diacylglycerol-activated/phospholipid-dependent protein kinase C inhibitor activity --> diacylglycerol-activated phospholipid-dependent protein kinase C inhibitor activity
GO:0005275: amine/polyamine transporter activity --> amine transporter activity
GO:0005283: sodium:amino acid transporter activity --> sodium:amino acid symporter activity
GO:0005284: insulin-activated sodium/amino acid transporter activity --> insulin-activated sodium:amino acid symporter activity
GO:0005391: sodium/potassium-exchanging ATPase activity --> sodium:potassium-exchanging ATPase activity
GO:0005476: carnitine/acyl carnitine carrier activity --> carnitine:acyl carnitine carrier activity
GO:0008294: calcium/calmodulin-responsive adenylate cyclase activity --> calcium- and calmodulin-responsive adenylate cyclase activity
GO:0008511: sodium:chloride/potassium:chloride symporter activity --> sodium:potassium:chloride symporter activity
GO:0008895: heme lyase/disulfide oxidoreductase activity --> heme lyase disulfide oxidoreductase activity
GO:0008900: hydrogen/potassium-exchanging ATPase activity --> hydrogen:potassium-exchanging ATPase activity
GO:0009883: red/far-red light photoreceptor activity --> red or far-red light photoreceptor activity
GO:0015223: vitamin/cofactor transporter activity --> vitamin or cofactor transporter activity
GO:0015267: channel/pore class transporter activity --> channel or pore class transporter activity
GO:0015665: organic alcohol transporter activity --> alcohol transporter activity
GO:0017131: uridine-rich cytoplasmic polyadenylation element binding --> uridine-rich cytoplasmic polyadenylylation element binding
GO:0030364: cleavage/polyadenylation specificity factor activity --> cleavage and polyadenylylation specificity factor activity
GO:0048101: calcium/calmodulin-regulated cGMP-specific phosphodiesterase activity --> calcium- and calmodulin-regulated cGMP-specific phosphodiesterase activity
New definitions for function ontology terms (18 new definitions)
GO:0003767, co-chaperone activity
GO:0003772, co-chaperonin activity
GO:0004009, ATP-binding cassette (ABC) transporter activity
GO:0008077, Hsp70/Hsp90 organizing protein activity
GO:0008403, 25-hydroxycholecalciferol-24-hydroxylase activity
GO:0008822, crotonobetaine/carnitine-CoA ligase activity
GO:0015406, ABC-type uptake permease activity
GO:0015427, ABC-type efflux porter activity
GO:0015435, ABC-type efflux permease activity
GO:0016405, CoA-ligase activity
GO:0016694, bacterial catalase-peroxidase activity
GO:0016860, intramolecular oxidoreductase activity
GO:0019775, FAT10 conjugating enzyme activity
GO:0019776, APG8 conjugating enzyme activity
GO:0019777, APG12 conjugating enzyme activity
GO:0019949, SUMO conjugating enzyme activity
GO:0042294, URM1 conjugating enzyme activity
GO:0042296, ISG15 conjugating enzyme activity
New term merges in function ontology
GO:0005285 has been merged into GO:0005283, sodium:amino acid symporter activity
GO:0008027 has been merged into GO:0015501, glutamate:sodium symporter activity
GO:0008844 has been merged into GO:0008821, crossover junction endodeoxyribonuclease activity
GO:0045546 has been merged into GO:0030795, jasmonate O-methyltransferase activity
Term movements in function ontology:
Terms movements under GO Slim term 'chaperone activity ; GO:0003754'
- GO:0000005, ribosomal chaperone activity
- GO:0003754, chaperone activity
- GO:0003759, glycoprotein-specific chaperone activity
- GO:0003762, histone-specific chaperone activity
- GO:0003767, co-chaperone activity
- GO:0003772, co-chaperonin activity
- GO:0003773, heat shock protein activity
- GO:0008077, Hsp70/Hsp90 organizing protein activity
- GO:0015472, fimbrium-specific chaperone activity
- GO:0016530, metallochaperone activity
- GO:0016531, copper chaperone activity
- GO:0016532, superoxide dismutase copper chaperone activity
- GO:0017072, tubulin-specific chaperone activity
Terms movements under GO Slim term 'catalytic activity ; GO:0003824'
- GO:0004009, ATP-binding cassette (ABC) transporter activity
- GO:0008822, crotonobetaine/carnitine-CoA ligase activity
- GO:0015406, ABC-type uptake permease activity
- GO:0015427, ABC-type efflux porter activity
- GO:0015435, ABC-type efflux permease activity
- GO:0016694, bacterial catalase-peroxidase activity
Terms movements under GO Slim term 'transporter activity ; GO:0005215'
+ GO:0000036, acyl carrier activity
- GO:0004009, ATP-binding cassette (ABC) transporter activity
- GO:0005260, channel-conductance-controlling ATPase activity
- GO:0005395, eye pigment precursor transporter activity
- GO:0005396, transmembrane conductance regulator activity
- GO:0008560, steroid-transporting ATPase activity
- GO:0015406, ABC-type uptake permease activity
- GO:0015418, quaternary-ammonium-compound-transporting ATPase activity
- GO:0015427, ABC-type efflux porter activity
- GO:0015431, conjugate transporter activity
- GO:0015435, ABC-type efflux permease activity
+ GO:0016530, metallochaperone activity
+ GO:0016531, copper chaperone activity
+ GO:0016532, superoxide dismutase copper chaperone activity
- GO:0019829, cation-transporting ATPase activity
Terms movements under GO Slim term 'binding ; GO:0005488'
+ GO:0000062, acyl-CoA binding
Terms movements under GO Slim term 'electron transporter activity ; GO:0005489'
+ GO:0008137, NADH dehydrogenase (ubiquinone) activity
+ GO:0050136, NADH dehydrogenase (quinone) activity
Terms movements under GO Slim term 'lipid binding ; GO:0008289'
- GO:0000036, acyl carrier activity
- GO:0005541, acyl-CoA or acyl binding
New terms in process ontology (96 new terms)
GO:0001410 GO:0030154 SGD D 981694 chlamydospore formation (sensu Candida albicans)
GO:0001880 GO:0007275 MGI D Mullerian duct regression
GO:0001881 GO:0007165 MGI D receptor recycling
GO:0019538
GO:0030965 GO:0006118 MAH D plasma membrane electron transport, NADH to quinone
GO:0008152
GO:0030967 GO:0006950 MAH D ER-nuclear sterol response pathway
GO:0007165
GO:0030968 GO:0006950 MAH D unfolded protein response
GO:0007165
GO:0009607
GO:0030969 GO:0006950 MAH D UFP-specific transcription factor mRNA processing during unfolded protein response
GO:0007165
GO:0008152
GO:0009607
GO:0030970 GO:0006810 MAH D retrograde protein transport, ER to cytosol
GO:0015031
GO:0030972 GO:0008219 MAH D 996213 cleavage of cytosolic proteins during apoptosis
GO:0035193 GO:0007275 FB D 982740 central nervous system metamorphosis
GO:0035194 GO:0008152 FB D 982645 RNA-mediated gene silencing
GO:0040029
GO:0035195 GO:0008152 FB D 982645 miRNA-mediated gene silencing
GO:0040029
GO:0035196 GO:0008152 FB D 982645 miRNA-mediated gene silencing, production of miRNAs
GO:0009058
GO:0040029
GO:0035199 GO:0007582 FB D 982662 salt aversion
GO:0007610
GO:0009605
GO:0035200 GO:0007275 FB D leg disc anterior/posterior pattern formation
GO:0035201 GO:0007275 FB D leg disc anterior/posterior lineage restriction
GO:0035202 GO:0007275 FB D tracheal sac formation (sensu Insecta)
GO:0035203 GO:0007275 FB D regulation of lamellocyte differentiation
GO:0008150
GO:0030154
GO:0035204 GO:0007275 FB D negative regulation of lamellocyte differentiation
GO:0008150
GO:0030154
GO:0035205 GO:0007275 FB D positive regulation of lamellocyte differentiation
GO:0008150
GO:0030154
GO:0035206 GO:0007275 FB D regulation of hemocyte proliferation (sensu Arthropda)
GO:0008150
GO:0008283
GO:0035207 GO:0007275 FB D negative regulation of hemocyte proliferation (sensu Arthropda)
GO:0008150
GO:0008283
GO:0035208 GO:0007275 FB D positive regulation of hemocyte proliferation (sensu Arthropda)
GO:0008150
GO:0008283
GO:0035209 GO:0007275 FB D 997905 pupal development (sensu Insecta)
GO:0035210 GO:0007275 FB D 997905 prepupal development (sensu Insecta)
GO:0035211 GO:0007275 FB D 994423 spermathecum morphogenesis
GO:0035212 GO:0007275 FB D 993809 cell competition (sensu Metazoa)
GO:0008150
GO:0008151
GO:0040007
GO:0035213 GO:0007275 FB D clypeo-labral disc development
GO:0035214 GO:0007275 FB D eye-antennal disc development
GO:0035215 GO:0007275 FB D genital disc development
GO:0035216 GO:0007275 FB D haltere disc development
GO:0035217 GO:0007275 FB D labial disc development
GO:0035218 GO:0007275 FB D leg disc development
GO:0035219 GO:0007275 FB D prothoracic disc development
GO:0035220 GO:0007275 FB D wing disc development
GO:0035221 GO:0007275 FB D genital disc pattern formation
GO:0035222 GO:0007275 FB D wing disc pattern formation
GO:0035223 GO:0007275 FB D leg disc pattern formation
GO:0035224 GO:0007275 FB D genital disc anterior/posterior pattern formation
GO:0035225 GO:0007275 FB D determination of genital disc primordium
GO:0043170 GO:0008152 JL D macromolecule metabolism
GO:0043171 GO:0008152 JL D peptide catabolism
GO:0009056
GO:0043172 GO:0006118 JL D ferredoxin biosynthesis
GO:0006412
GO:0019538
GO:0043173 GO:0008152 JL D nucleotide salvage
GO:0043174 GO:0008152 JL D nucleoside salvage
GO:0043179 GO:0007267 JL D 815230 rhythmic excitation
GO:0007582
GO:0043180 GO:0007267 JL D 815230 rhythmic inhibition
GO:0007582
GO:0043181 GO:0006810 JL D vacuolar sequestering
GO:0006996
GO:0043182 GO:0006810 JL D 945180 vacuolar sequestering of sodium ion
GO:0006811
GO:0006996
GO:0007582
GO:0019725
GO:0043193 GO:0006350 JL D 964859 positive regulation of gene transcription
GO:0007582
GO:0008150
GO:0008152
GO:0043200 GO:0009628 JL D 996184 response to amino acid
GO:0043201 GO:0009628 JL D 996184 response to leucine
GO:0048477 GO:0000003 JIC D 989714 oogenesis
GO:0048478 GO:0006259 JIC D 989727 replication fork protection
GO:0007049
GO:0007582
GO:0008150
GO:0008152
GO:0048479 GO:0007275 JIC D 951331 style development
GO:0048480 GO:0007275 JIC D 951331 stigma development
GO:0048481 GO:0007275 JIC D 951331 ovule development
GO:0048482 GO:0007275 JIC D 951331 ovule morphogenesis
GO:0048483 GO:0007275 JIC D 991214 autonomic nervous system development
GO:0048484 GO:0007275 JIC D 991214 enteric nervous system development
GO:0048485 GO:0007275 JIC D 991214 sympathetic nervous system development
GO:0048486 GO:0007275 JIC D 991214 parasympathetic nervous system development
GO:0048488 GO:0006810 JIC D 960063 synaptic vesicle endocytosis
GO:0048489 GO:0006810 JIC D 960063 synaptic vesicle transport
GO:0048490 GO:0006810 JIC D 960063 anteriograde synaptic vesicle transport
GO:0048491 GO:0006810 JIC D 960063 retrograde synaptic vesicle transport
GO:0051083 GO:0019538 AI D 869662 cotranslational protein folding
GO:0051084 GO:0019538 AI D 869662 posttranslational protein folding
GO:0051085 GO:0019538 AI D 869662 chaperone cofactor dependent protein folding
GO:0051086 GO:0019538 AI D 869662 chaperone cofactor independent protein folding
GO:0051088 GO:0008152 AI D 958022 PMA-inducible membrane protein ectodomain proteolysis
GO:0009056
GO:0019538
GO:0051089 GO:0008152 AI D 958022 constitutive protein ectodomain proteolysis
GO:0009056
GO:0019538
GO:0051090 GO:0006350 AI D 964865 regulation of transcription factor activity
GO:0007582
GO:0008150
GO:0008152
GO:0051091 GO:0006350 AI D 964865 positive regulation of transcription factor activity
GO:0007582
GO:0008150
GO:0008152
GO:0051092 GO:0006350 AI D 964865 activation of NF-kappaB transcription factor
GO:0007582
GO:0008150
GO:0008152
GO:0051093 GO:0007275 AI D 998297 negative regulation of development
GO:0008150
GO:0051094 GO:0007275 AI D 998297 positive regulation of development
GO:0008150
GO:0051095 GO:0008150 AI D 985887 regulation of helicase activity
GO:0051096 GO:0008150 AI D 985887 positive regulation of helicase activity
GO:0051097 GO:0008150 AI D 985887 negative regulation of helicase activity
GO:0051098 GO:0008150 AI D 987949 regulation of binding
GO:0051099 GO:0008150 AI D 987949 positive regulation of binding
GO:0051100 GO:0008150 AI D 987949 negative regulation of binding
GO:0051101 GO:0006259 AI D 987949 regulation of DNA binding
GO:0008150
GO:0051102 GO:0006259 AI D 986016 DNA ligation during DNA recombination
GO:0051103 GO:0006259 AI D 986016 DNA ligation during DNA repair
GO:0006950
GO:0009719
GO:0051104 GO:0006259 AI D 986016 DNA ligation during DNA-dependent DNA replication
GO:0007049
GO:0051105 GO:0006259 AI D 986016 regulation of DNA ligation
GO:0007582
GO:0008150
GO:0008152
GO:0051106 GO:0006259 AI D 986016 positive regulation of DNA ligation
GO:0007582
GO:0008150
GO:0008152
GO:0051107 GO:0006259 AI D 986016 negative regulation of DNA ligation
GO:0007582
GO:0008150
GO:0008152
GO:0051110 GO:0006464 AI D peptidyl-histidine uridylylation, to form peptidyl-1'-(phospho-5'-uridine)-L-histidine
GO:0051111 GO:0006464 AI D peptidyl-histidine adenylylation
GO:0051112 GO:0006464 AI D peptidyl-histidine adenylylation, to form peptidyl-1'-(phospho-5'-adenosine)-L-histidine
GO:0051113 GO:0006464 AI D enzyme active site formation via 1'-(phospho-5'-adenosine)-L-histidine
GO:0051114 GO:0006464 AI D peptidyl-histidine uridylylation
GO:0051115 GO:0006464 AI D enzyme active site formation via 1'-(phospho-5'-uridine)-L-histidine
New obsoletions in process ontology
GO:0006459, binding unfolded ER proteins: represents a function rather than a process.
GO:0006988, unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor: represents a function rather than a process.
GO:0006989, unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase: represents a function rather than a process.
GO:0007085, nuclear membrane vesicle binding to chromatin: represents a molecular function.
GO:0007170, transmembrane receptor protein tyrosine kinase ligand binding: represents a function rather than a process.
GO:0007230, calcium-o-sensing receptor pathway: does not make sense.
GO:0008099, synaptic vesicle endocytosis: was wrongly defined.
GO:0008546, microtubule/chromatin interaction: represents a molecular function.
GO:0016083, synaptic vesicle fusion: was wrongly defined.
GO:0016181, synaptic vesicle transport: was wrongly defined.
GO:0016184, synaptic vesicle retrieval: was wrongly defined.
GO:0016186, synaptic vesicle fission: was wrongly defined.
GO:0016187, synaptic vesicle internalization: was wrongly defined.
Term name changes in process ontology
GO:0000069: centromere/kinetochore complex maturation --> centromere and kinetochore complex maturation
GO:0000077: DNA damage response, signal transduction resulting in cell cycle arrest --> DNA damage checkpoint
GO:0000288: mRNA catabolism, deadenylation-dependent --> mRNA catabolism, deadenylylation-dependent
GO:0000290: deadenylation-dependent decapping --> deadenylylation-dependent decapping
GO:0001539: ciliary/flagellar motility --> ciliary or flagellar motility
GO:0001548: ovarian follicle antrum/follicular fluid formation --> follicular fluid formation in the ovarian follicle antrum
GO:0001559: interpretation of nuclear/cytoplasmic ratio to regulate cell growth --> interpretation of nuclear:cytoplasmic ratio to regulate cell growth
GO:0001661: taste aversion --> conditioned taste aversion
GO:0001672: regulation of chromatin assembly/disassembly --> regulation of chromatin assembly or disassembly
GO:0002165: larval/pupal development (sensu Insecta) --> larval or pupal development (sensu Insecta)
GO:0006100: TCA intermediate metabolism --> tricarboxylic acid cycle intermediate metabolism
GO:0006333: chromatin assembly/disassembly --> chromatin assembly or disassembly
GO:0006378: mRNA polyadenylation --> mRNA polyadenylylation
GO:0006559: phenylalanine catabolism --> L-phenylalanine catabolism
GO:0006624: vacuolar protein processing/maturation --> vacuolar protein processing or maturation
GO:0006983: response to ER-overload --> ER-overload response
GO:0006985: EOR-mediated NF-kappaB activation --> EOR-mediated activation of NF-kappaB
GO:0006987: unfolded protein response, activation of signaling protein kinase/endonuclease --> unfolded protein response, activation of signaling protein activity
GO:0006990: unfolded protein response, target gene transcriptional activation --> unfolded protein response, positive regulation of target gene transcription
GO:0007197: muscarinic acetyl choline receptor, adenylate cyclase inhibiting pathway --> muscarinic acetylcholine receptor, adenylate cyclase inhibiting pathway
GO:0007207: muscarinic acetyl choline receptor, phospholipase C activating pathway --> muscarinic acetylcholine receptor, phospholipase C activating pathway
GO:0007213: acetyl choline receptor signaling, muscarinic pathway --> acetylcholine receptor signaling, muscarinic pathway
GO:0007221: Notch receptor target transcription factor activation --> activation of Notch receptor target transcription factor
GO:0007300: nurse cell/oocyte transport (sensu Insecta) --> nurse cell to ocyte transport (sensu Insecta)
GO:0007357: activation of central gap gene --> positive regulation of central gap gene transcription
GO:0007360: activation of posterior gap gene --> positive regulation of posterior gap gene transcription
GO:0007363: activation of terminal gap gene --> positive regulation of terminal gap gene transcription
GO:0007406: suppression of neuroblast proliferation --> negative regulation of neuroblast proliferation
GO:0007495: visceral mesoderm/endoderm interaction --> visceral mesoderm-endoderm interaction
GO:0007499: ectoderm/mesoderm interaction --> ectoderm and mesoderm interaction
GO:0007533: mating-type switching/recombination --> mating-type switching and recombination
GO:0007543: sex determination, somatic/gonadal interaction --> sex determination, somatic-gonadal interaction
GO:0008065: establishment of blood/nerve barrier --> establishment of blood-nerve barrier
GO:0008633: induction of pro-apoptotic gene products --> activation of pro-apoptotic gene products
GO:0009596: detection of pest/pathogen/parasite --> detection of pest, pathogen or parasite
GO:0009613: response to pest/pathogen/parasite --> response to pest, pathogen or parasite
GO:0009639: response to red/far-red light --> response to red or far red light
GO:0009734: auxin mediated signaling --> auxin mediated signaling pathway
GO:0009861: jasmonic acid/ethylene-dependent systemic resistance --> jasmonic acid and ethylene-dependent systemic resistance
GO:0009868: jasmonic acid/ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway --> jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway
GO:0009871: jasmonic acid/ethylene-dependent systemic resistance, ethylene mediated signaling pathway --> jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0009912: hair cell fate commitment --> auditory hair cell fate commitment
GO:0009999: negative regulation of hair cell fate specification --> negative regulation of auditory hair cell fate specification
GO:0010017: red/far red light signaling pathway --> red or far red light signaling pathway
GO:0015837: amine/polyamine transport --> amine transport
GO:0015875: vitamin/cofactor transport --> vitamin or cofactor transport
GO:0016475: interpretation of nuclear/cytoplasmic ratio --> interpretation of nuclear:cytoplasmic ratio
GO:0016550: insertion/deletion editing --> insertion or deletion editing
GO:0016551: posttranscriptional insertion/deletion editing --> posttranscriptional insertion or deletion editing
GO:0016552: cotranscriptional insertion/deletion editing --> cotranscriptional insertion or deletion editing
GO:0016553: base conversion/substitution editing --> base conversion or substitution editing
GO:0018116: peptidyl-lysine adenylation --> peptidyl-lysine adenylylation
GO:0018117: protein amino acid adenylation --> protein amino acid adenylylation
GO:0018131: oxazole/thiazole biosynthesis --> oxazole or thiazole biosynthesis
GO:0018178: peptidyl-threonine adenylation --> peptidyl-threonine adenylylation
GO:0018254: peptidyl-tyrosine adenylation --> peptidyl-tyrosine adenylylation
GO:0018409: peptide/protein amino-terminal blocking --> peptide or protein amino-terminal blocking
GO:0018410: peptide/protein carboxyl-terminal blocking --> peptide or protein carboxyl-terminal blocking
GO:0019291: tyrosine biosynthesis from chorismate via phenylalanine --> tyrosine biosynthesis from chorismate via L-phenylalanine
GO:0035104: sterol regulatory element binding-protein target gene transcriptional activation --> positive regulation of sterol regulatory element binding-protein target gene transcription
GO:0042667: hair cell fate specification --> auditory hair cell fate specification
GO:0042668: hair cell fate determination --> auditory hair cell fate determination
GO:0042669: regulation of hair cell fate specification --> regulation of auditory hair cell fate specification
GO:0042786: active immune evasion via modulation of antigen-processing/presentation pathway --> active immune evasion via modulation of antigen-processing or presentation pathway
GO:0042976: tyrosine phosphorylation of JAK protein --> activation of JAK protein
GO:0043042: amino acid adenylation by nonribosomal peptide synthase --> amino acid adenylylation by nonribosomal peptide synthase
GO:0045607: regulation of hair cell differentiation --> regulation of auditory hair cell differentiation
GO:0045608: negative regulation of hair cell differentiation --> negative regulation of auditory hair cell differentiation
GO:0045609: positive regulation of hair cell differentiation --> positive regulation of auditory hair cell differentiation
GO:0045798: negative regulation of chromatin assembly/disassembly --> negative regulation of chromatin assembly or disassembly
GO:0045799: positive regulation of chromatin assembly/disassembly --> positive regulation of chromatin assembly or disassembly
GO:0046484: oxazole/thiazole metabolism --> oxazole or thiazole metabolism
GO:0048104: establishment of body hair/bristle orientation --> establishment of body hair or bristle orientation
GO:0048239: suppression of telomeric recombination at telomere --> negative regulation of telomeric recombination at telomere
GO:0050788: sequestration of mercury ion --> sequestering of mercury ion
New definitions for process ontology terms (93 new definitions)
GO:0002117, larval development (sensu Amphibia)
GO:0002165, larval or pupal development (sensu Insecta)
GO:0006457, protein folding
GO:0006459, binding unfolded ER proteins
GO:0006921, disassembly of cell structures
GO:0006922, cleavage of lamin
GO:0006923, cleavage of cytoskeletal proteins
GO:0006983, ER-overload response
GO:0006984, ER-nuclear signaling pathway
GO:0006985, EOR-mediated activation of NF-kappaB
GO:0006987, unfolded protein response, activation of signaling protein activity
GO:0006988, unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor
GO:0006989, unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase
GO:0006990, unfolded protein response, positive regulation of target gene transcription
GO:0007085, nuclear membrane vesicle binding to chromatin
GO:0007140, male meiosis
GO:0007141, male meiosis I
GO:0007142, male meiosis II
GO:0007144, female meiosis I
GO:0007147, female meiosis II
GO:0007170, transmembrane receptor protein tyrosine kinase ligand binding
GO:0007187, G-protein signaling, coupled to cyclic nucleotide second messenger
GO:0007188, G-protein signaling, coupled to cAMP nucleotide second messenger
GO:0007189, G-protein signaling, adenylate cyclase activating pathway
GO:0007191, dopamine receptor, adenylate cyclase activating pathway
GO:0007192, serotonin receptor, adenylate cyclase activating pathway
GO:0007193, G-protein signaling, adenylate cyclase inhibiting pathway
GO:0007195, dopamine receptor, adenylate cyclase inhibiting pathway
GO:0007196, metabotropic glutamate receptor, adenylate cyclase inhibiting pathway
GO:0007197, muscarinic acetylcholine receptor, adenylate cyclase inhibiting pathway
GO:0007198, serotonin receptor, adenylate cyclase inhibiting pathway
GO:0007199, G-protein signaling, coupled to cGMP nucleotide second messenger
GO:0007200, G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)
GO:0007205, protein kinase C activation
GO:0007206, metabotropic glutamate receptor, phospholipase C activating pathway
GO:0007207, muscarinic acetylcholine receptor, phospholipase C activating pathway
GO:0007208, serotonin receptor, phospholipase C activating pathway
GO:0007209, tachykinin receptor, phospholipase C activating pathway
GO:0007210, serotonin receptor signaling pathway
GO:0007211, octopamine/tyramine signaling pathway
GO:0007212, dopamine receptor signaling pathway
GO:0007213, acetylcholine receptor signaling, muscarinic pathway
GO:0007214, gamma-aminobutyric acid signaling pathway
GO:0007215, glutamate signaling pathway
GO:0007216, metabotropic glutamate receptor signaling pathway
GO:0007217, tachykinin signaling pathway
GO:0007218, neuropeptide signaling pathway
GO:0007220, Notch receptor processing
GO:0007221, activation of Notch receptor target transcription factor
GO:0007224, smoothened receptor signaling pathway
GO:0007229, integrin-mediated signaling pathway
GO:0007230, calcium-o-sensing receptor pathway
GO:0007277, pole cell development
GO:0007352, zygotic determination of dorsal/ventral axis
GO:0007406, negative regulation of neuroblast proliferation
GO:0007418, ventral midline development
GO:0007419, ventral cord development
GO:0007421, stomatogastric nervous system development
GO:0007422, peripheral nervous system development
GO:0007423, sensory organ development
GO:0007435, salivary gland morphogenesis
GO:0007436, larval salivary gland morphogenesis
GO:0007437, adult salivary gland morphogenesis
GO:0007440, foregut morphogenesis
GO:0007441, anterior midgut (ectodermal) morphogenesis
GO:0007442, hindgut morphogenesis
GO:0007473, wing disc proximal/distal pattern formation
GO:0007496, anterior midgut development
GO:0007497, posterior midgut development
GO:0007522, visceral muscle development
GO:0007523, larval visceral muscle development
GO:0007524, adult visceral muscle development
GO:0007525, somatic muscle development
GO:0007526, larval somatic muscle development
GO:0007527, adult somatic muscle development
GO:0007528, neuromuscular junction development
GO:0008584, male gonad development
GO:0008585, female gonad development
GO:0008633, activation of pro-apoptotic gene products
GO:0008637, apoptotic mitochondrial changes
GO:0009255, Entner-Doudoroff pathway
GO:0009558, cellularization of megagametophyte
GO:0009878, nodule morphogenesis
GO:0018177, protein amino acid uridylylation
GO:0019221, cytokine and chemokine mediated signaling pathway
GO:0019757, glycosinolate metabolism
GO:0019758, glycosinolate biosynthesis
GO:0019759, glycosinolate catabolism
GO:0030262, apoptotic nuclear changes
GO:0030264, nuclear fragmentation
GO:0030265, rhodopsin mediated G-protein signaling, coupled to IP3 second messenger
GO:0030470, spore germination (sensu Fungi)
GO:0030476, spore wall assembly (sensu Fungi)
New term merges in process ontology
GO:0007151 has been merged into GO:0030437, sporulation (sensu Fungi)
GO:0007152 has been merged into GO:0030476, spore wall assembly (sensu Fungi)
GO:0007153 has been merged into GO:0030470, spore germination (sensu Fungi)
GO:0007255 has been merged into GO:0000186, activation of MAPKK
GO:0018176 has been merged into GO:0018117, protein amino acid adenylylation
GO:0048409 has been merged into GO:0009908, flower development
GO:0048410 has been merged into GO:0048460, flower formation
GO:0048411 has been merged into GO:0048439, flower morphogenesis
GO:0048412 has been merged into GO:0048461, flower structural organization
GO:0048413 has been merged into GO:0048438, floral whorl development
GO:0048414 has been merged into GO:0048457, floral whorl morphogenesis
GO:0048415 has been merged into GO:0048458, floral whorl formation
GO:0048416 has been merged into GO:0048459, floral whorl structural organization
GO:0048417 has been merged into GO:0048441, petal development
GO:0048418 has been merged into GO:0048446, petal morphogenesis
GO:0048419 has been merged into GO:0048451, petal formation
GO:0048420 has been merged into GO:0048452, petal structural organization
GO:0048421 has been merged into GO:0048442, sepal development
GO:0048422 has been merged into GO:0048447, sepal morphogenesis
GO:0048423 has been merged into GO:0048453, sepal formation
GO:0048424 has been merged into GO:0048454, sepal structural organization
GO:0048425 has been merged into GO:0048443, stamen development
GO:0048426 has been merged into GO:0048448, stamen morphogenesis
GO:0048427 has been merged into GO:0048455, stamen formation
GO:0048428 has been merged into GO:0048456, stamen structural organization
GO:0048429 has been merged into GO:0048440, carpel development
GO:0048430 has been merged into GO:0048445, carpel morphogenesis
GO:0048431 has been merged into GO:0048462, carpel formation
GO:0048432 has been merged into GO:0048463, carpel structural organization
GO:0048433 has been merged into GO:0048437, floral organ development
GO:0048434 has been merged into GO:0048444, floral organ morphogenesis
GO:0048435 has been merged into GO:0048450, floral organ structural organization
GO:0048436 has been merged into GO:0048449, floral organ formation
Term movements in process ontology:
Terms movements under GO Slim term 'transcription ; GO:0006350'
+ GO:0006985, EOR-mediated activation of NF-kappaB
+ GO:0006990, unfolded protein response, positive regulation of target gene transcription
+ GO:0007221, activation of Notch receptor target transcription factor
+ GO:0007228, activation of hh target transcription factor
+ GO:0007357, positive regulation of central gap gene transcription
+ GO:0007360, positive regulation of posterior gap gene transcription
+ GO:0007363, positive regulation of terminal gap gene transcription
Terms movements under GO Slim term 'protein modification ; GO:0006464'
+ GO:0000167, activation of MAPKKK during osmolarity sensing
+ GO:0000168, activation of MAPKK during osmolarity sensing
+ GO:0000169, activation of MAPK during osmolarity sensing
+ GO:0000185, activation of MAPKKK
+ GO:0000186, activation of MAPKK
+ GO:0000187, activation of MAPK
+ GO:0000197, activation of MAPKKK during cell wall biogenesis
+ GO:0000198, activation of MAPKK during cell wall biogenesis
+ GO:0000199, activation of MAPK during cell wall biogenesis
+ GO:0007233, activation of Pbs2 kinase
+ GO:0007250, activation of NF-kappaB-inducing kinase
+ GO:0007256, activation of JUNKK
+ GO:0007257, activation of JUNK
+ GO:0008636, caspase activation via phosphorylation
+ GO:0042655, activation of JUNKKK
+ GO:0042976, activation of JAK protein
+ GO:0042977, tyrosine phosphorylation of JAK2 protein
Terms movements under GO Slim term 'transport ; GO:0006810'
- GO:0008099, synaptic vesicle endocytosis
- GO:0016083, synaptic vesicle fusion
- GO:0016181, synaptic vesicle transport
- GO:0016184, synaptic vesicle retrieval
- GO:0016186, synaptic vesicle fission
- GO:0016187, synaptic vesicle internalization
Terms movements under GO Slim term 'response to stress ; GO:0006950'
- GO:0001562, response to protozoa
- GO:0001563, detection of protozoa
- GO:0001879, detection of yeast
- GO:0006266, DNA ligation
- GO:0006983, ER-overload response
- GO:0006984, ER-nuclear signaling pathway
- GO:0006985, EOR-mediated activation of NF-kappaB
- GO:0006988, unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor
- GO:0006989, unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase
- GO:0009600, detection of nematode
- GO:0009601, detection of insect
- GO:0009602, detection of symbiont
- GO:0009603, detection of symbiotic fungi
- GO:0009604, detection of symbiotic bacteria
- GO:0009624, response to nematodes
- GO:0009681, detection of non-pathogenic bacteria
- GO:0016045, detection of bacteria
- GO:0016046, detection of fungi
- GO:0042833, response to pathogenic protozoa
Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010'
- GO:0008546, microtubule/chromatin interaction
Terms movements under GO Slim term 'cell cycle ; GO:0007049'
- GO:0006265, DNA topological change
- GO:0006266, DNA ligation
- GO:0006288, base-excision repair, DNA ligation
- GO:0007085, nuclear membrane vesicle binding to chromatin
- GO:0007097, nuclear migration
- GO:0007312, oocyte nucleus migration
- GO:0008546, microtubule/chromatin interaction
- GO:0035190, syncytial nuclear migration
- GO:0035191, nuclear axial expansion
- GO:0035192, nuclear cortical migration
- GO:0048128, oocyte nucleus migration (sensu Insecta)
Terms movements under GO Slim term 'signal transduction ; GO:0007165'
+ GO:0006934, substrate-bound cell migration, adhesion receptor recycling
+ GO:0006983, ER-overload response
+ GO:0006984, ER-nuclear signaling pathway
+ GO:0006985, EOR-mediated activation of NF-kappaB
+ GO:0006987, unfolded protein response, activation of signaling protein activity
+ GO:0006990, unfolded protein response, positive regulation of target gene transcription
+ GO:0006992, sterol depletion response, sterol regulatory element binding-protein cleavage
+ GO:0006993, sterol depletion response, sterol regulatory element binding-protein nuclear translocation
+ GO:0006994, sterol depletion response, SREBP target gene transcriptional activation
- GO:0007170, transmembrane receptor protein tyrosine kinase ligand binding
- GO:0007230, calcium-o-sensing receptor pathway
+ GO:0016562, peroxisome receptor recycling
Terms movements under GO Slim term 'cell-cell signaling ; GO:0007267'
- GO:0008099, synaptic vesicle endocytosis
- GO:0016083, synaptic vesicle fusion
- GO:0016181, synaptic vesicle transport
- GO:0016183, synaptic vesicle coating
- GO:0016184, synaptic vesicle retrieval
- GO:0016185, synaptic vesicle budding
- GO:0016186, synaptic vesicle fission
- GO:0016187, synaptic vesicle internalization
- GO:0016188, synaptic vesicle maturation
- GO:0016189, synaptic vesicle to endosome fusion
- GO:0016191, synaptic vesicle uncoating
Terms movements under GO Slim term 'development ; GO:0007275'
+ GO:0007347, regulation of preblastoderm mitotic cell cycle
+ GO:0007348, regulation of syncytial blastoderm mitotic cell cycle
+ GO:0009558, cellularization of megagametophyte
+ GO:0009794, regulation of mitotic cell cycle, embryonic
+ GO:0035185, preblastoderm mitotic cell cycle
+ GO:0035186, syncytial blastoderm mitotic cell cycle
+ GO:0045448, mitotic cell cycle, embryonic
+ GO:0045976, negative regulation of mitotic cell cycle, embryonic
+ GO:0045977, positive regulation of mitotic cell cycle, embryonic
+ GO:0046001, negative regulation of preblastoderm mitotic cell cycle
+ GO:0046002, positive regulation of preblastoderm mitotic cell cycle
+ GO:0046003, negative regulation of syncytial blastoderm mitotic cell cycle
+ GO:0046004, positive regulation of syncytial blastoderm mitotic cell cycle
Terms movements under GO Slim term 'physiological process ; GO:0007582'
+ GO:0006985, EOR-mediated activation of NF-kappaB
+ GO:0006990, unfolded protein response, positive regulation of target gene transcription
+ GO:0007221, activation of Notch receptor target transcription factor
+ GO:0007228, activation of hh target transcription factor
+ GO:0007357, positive regulation of central gap gene transcription
+ GO:0007360, positive regulation of posterior gap gene transcription
+ GO:0007363, positive regulation of terminal gap gene transcription
- GO:0008099, synaptic vesicle endocytosis
- GO:0016083, synaptic vesicle fusion
- GO:0016181, synaptic vesicle transport
- GO:0016183, synaptic vesicle coating
- GO:0016184, synaptic vesicle retrieval
- GO:0016185, synaptic vesicle budding
- GO:0016186, synaptic vesicle fission
- GO:0016187, synaptic vesicle internalization
- GO:0016188, synaptic vesicle maturation
- GO:0016189, synaptic vesicle to endosome fusion
- GO:0016191, synaptic vesicle uncoating
Terms movements under GO Slim term 'biological_process ; GO:0008150'
+ GO:0000185, activation of MAPKKK
+ GO:0000186, activation of MAPKK
+ GO:0000187, activation of MAPK
+ GO:0000197, activation of MAPKKK during cell wall biogenesis
+ GO:0000198, activation of MAPKK during cell wall biogenesis
+ GO:0000199, activation of MAPK during cell wall biogenesis
+ GO:0006985, EOR-mediated activation of NF-kappaB
+ GO:0006990, unfolded protein response, positive regulation of target gene transcription
- GO:0006991, response to sterol depletion
- GO:0006992, sterol depletion response, sterol regulatory element binding-protein cleavage
- GO:0006993, sterol depletion response, sterol regulatory element binding-protein nuclear translocation
+ GO:0007221, activation of Notch receptor target transcription factor
+ GO:0007228, activation of hh target transcription factor
+ GO:0007233, activation of Pbs2 kinase
+ GO:0007250, activation of NF-kappaB-inducing kinase
+ GO:0007256, activation of JUNKK
+ GO:0007257, activation of JUNK
+ GO:0007357, positive regulation of central gap gene transcription
+ GO:0007360, positive regulation of posterior gap gene transcription
+ GO:0007363, positive regulation of terminal gap gene transcription
+ GO:0009909, regulation of flower development
+ GO:0009910, negative regulation of flower development
+ GO:0009911, positive regulation of flower development
- GO:0016083, synaptic vesicle fusion
+ GO:0042655, activation of JUNKKK
+ GO:0042976, activation of JAK protein
+ GO:0042977, tyrosine phosphorylation of JAK2 protein
+ GO:0045570, regulation of imaginal disc growth
+ GO:0045571, negative regulation of imaginal disc growth
+ GO:0045572, positive regulation of imaginal disc growth
Terms movements under GO Slim term 'cell growth and/or maintenance ; GO:0008151'
+ GO:0009558, cellularization of megagametophyte
Terms movements under GO Slim term 'metabolism ; GO:0008152'
+ GO:0000024, maltose biosynthesis
+ GO:0000185, activation of MAPKKK
+ GO:0000186, activation of MAPKK
+ GO:0000187, activation of MAPK
+ GO:0000197, activation of MAPKKK during cell wall biogenesis
+ GO:0000198, activation of MAPKK during cell wall biogenesis
+ GO:0000199, activation of MAPK during cell wall biogenesis
+ GO:0000271, polysaccharide biosynthesis
+ GO:0001572, lactosylceramide biosynthesis
+ GO:0001574, ganglioside biosynthesis
+ GO:0001576, globoside biosynthesis
+ GO:0005978, glycogen biosynthesis
+ GO:0005986, sucrose biosynthesis
+ GO:0005989, lactose biosynthesis
+ GO:0005992, trehalose biosynthesis
+ GO:0006031, chitin biosynthesis
+ GO:0006032, chitin catabolism
+ GO:0006035, cuticle chitin biosynthesis
+ GO:0006036, cuticle chitin catabolism
+ GO:0006038, cell wall chitin biosynthesis
+ GO:0006039, cell wall chitin catabolism
+ GO:0006058, mannoprotein catabolism
+ GO:0006075, beta-1,3 glucan biosynthesis
+ GO:0006078, beta-1,6 glucan biosynthesis
+ GO:0006465, signal peptide processing
+ GO:0006489, dolichyl diphosphate biosynthesis
+ GO:0006506, GPI anchor biosynthesis
+ GO:0006508, proteolysis and peptidolysis
+ GO:0006509, membrane protein ectodomain proteolysis
+ GO:0006510, ATP-dependent proteolysis
+ GO:0006511, ubiquitin-dependent protein catabolism
+ GO:0006515, misfolded or incompletely synthesized protein catabolism
+ GO:0006516, glycoprotein catabolism
+ GO:0006517, protein deglycosylation
+ GO:0006655, phosphatidylglycerol biosynthesis
+ GO:0006656, phosphatidylcholine biosynthesis
+ GO:0006657, CDP-choline pathway
+ GO:0006659, phosphatidylserine biosynthesis
+ GO:0006660, phosphatidylserine catabolism
+ GO:0006661, phosphatidylinositol biosynthesis
+ GO:0006663, platelet activating factor biosynthesis
+ GO:0006669, sphinganine-1-phosphate biosynthesis
+ GO:0006679, glucosylceramide biosynthesis
+ GO:0006680, glucosylceramide catabolism
+ GO:0006682, galactosylceramide biosynthesis
+ GO:0006683, galactosylceramide catabolism
+ GO:0006685, sphingomyelin catabolism
+ GO:0006686, sphingomyelin biosynthesis
+ GO:0006688, glycosphingolipid biosynthesis
+ GO:0006689, ganglioside catabolism
+ GO:0006694, steroid biosynthesis
+ GO:0006706, steroid catabolism
+ GO:0006985, EOR-mediated activation of NF-kappaB
+ GO:0006990, unfolded protein response, positive regulation of target gene transcription
+ GO:0007039, vacuolar protein catabolism
+ GO:0007221, activation of Notch receptor target transcription factor
+ GO:0007228, activation of hh target transcription factor
+ GO:0007233, activation of Pbs2 kinase
+ GO:0007250, activation of NF-kappaB-inducing kinase
+ GO:0007256, activation of JUNKK
+ GO:0007257, activation of JUNK
+ GO:0007357, positive regulation of central gap gene transcription
+ GO:0007360, positive regulation of posterior gap gene transcription
+ GO:0007363, positive regulation of terminal gap gene transcription
+ GO:0008054, cyclin catabolism
+ GO:0008299, isoprenoid biosynthesis
+ GO:0008300, isoprenoid catabolism
+ GO:0008610, lipid biosynthesis
+ GO:0008636, caspase activation via phosphorylation
+ GO:0008654, phospholipid biosynthesis
+ GO:0009050, glycopeptide catabolism
+ GO:0009057, macromolecule catabolism
+ GO:0009059, macromolecule biosynthesis
+ GO:0009103, lipopolysaccharide biosynthesis
+ GO:0009104, lipopolysaccharide catabolism
+ GO:0009241, polyisoprenoid biosynthesis
+ GO:0009242, colanic acid biosynthesis
+ GO:0009243, O antigen biosynthesis
+ GO:0009244, lipopolysaccharide core region biosynthesis
+ GO:0009245, lipid A biosynthesis
+ GO:0009246, enterobacterial common antigen biosynthesis
+ GO:0009247, glycolipid biosynthesis
+ GO:0009248, K antigen biosynthesis
+ GO:0009250, glucan biosynthesis
+ GO:0009252, peptidoglycan biosynthesis
+ GO:0009312, oligosaccharide biosynthesis
+ GO:0009395, phospholipid catabolism
+ GO:0009777, photosynthetic phosphorylation
+ GO:0009778, cyclic photosynthetic phosphorylation
+ GO:0009779, noncyclic photosynthetic phosphorylation
+ GO:0009969, xyloglucan biosynthesis
+ GO:0010021, amylopectin biosynthesis
+ GO:0010110, regulation of photosynthesis, dark reaction
+ GO:0010132, dhurrin biosynthesis
+ GO:0010146, fructan biosynthesis
+ GO:0016042, lipid catabolism
+ GO:0016051, carbohydrate biosynthesis
+ GO:0016091, prenol biosynthesis
+ GO:0016092, prenol catabolism
+ GO:0016094, polyprenol biosynthesis
+ GO:0016095, polyprenol catabolism
+ GO:0016097, polyisoprenoid catabolism
+ GO:0016129, phytosteroid biosynthesis
+ GO:0016130, phytosteroid catabolism
+ GO:0016132, brassinosteroid biosynthesis
+ GO:0016133, brassinosteroid catabolism
+ GO:0016138, glycoside biosynthesis
+ GO:0016141, O-glycoside biosynthesis
+ GO:0016144, S-glycoside biosynthesis
+ GO:0016254, preassembly of GPI anchor in ER membrane
+ GO:0016255, attachment of GPI anchor to protein
+ GO:0016598, protein arginylation
+ GO:0018104, peptidoglycan-protein cross-linking
+ GO:0018265, GPI anchor biosynthesis via N-asparaginyl-glycosylphosphatidylinositolethanolamine
+ GO:0018266, GPI anchor biosynthesis via N-aspartyl-glycosylphosphatidylinositolethanolamine
+ GO:0018267, GPI anchor biosynthesis via N-cysteinyl-glycosylphosphatidylinositolethanolamine
+ GO:0018268, GPI anchor biosynthesis via N-glycyl-glycosylphosphatidylinositolethanolamine
+ GO:0018269, GPI anchor biosynthesis via N-seryl-glycosylphosphatidylinositolethanolamine
+ GO:0018270, GPI anchor biosynthesis via N-alanyl-glycosylphosphatidylinositolethanolamine
+ GO:0018281, GSI anchor biosynthesis via N-seryl-glycosylsphingolipidinositolethanolamine
+ GO:0019121, peptidoglycan-protein cross-linking via N6-mureinyl-L-lysine
+ GO:0019184, nonribosomal peptide biosynthesis
+ GO:0019252, starch biosynthesis
+ GO:0019347, GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthesis
+ GO:0019375, galactolipid biosynthesis
+ GO:0019376, galactolipid catabolism
+ GO:0019377, glycolipid catabolism
+ GO:0019390, glucuronoside biosynthesis
+ GO:0019408, dolichol biosynthesis
+ GO:0019685, photosynthesis, dark reaction
+ GO:0019756, cyanogenic glycoside biosynthesis
+ GO:0019758, glycosinolate biosynthesis
+ GO:0019761, glucosinolate biosynthesis
+ GO:0019941, modification-dependent protein catabolism
+ GO:0019942, NEDD8 class-dependent protein catabolism
+ GO:0019950, SMT3-dependent protein catabolism
+ GO:0019951, Smt3-protein conjugation
+ GO:0030148, sphingolipid biosynthesis
+ GO:0030149, sphingolipid catabolism
+ GO:0030163, protein catabolism
+ GO:0030164, protein denaturation
+ GO:0030166, proteoglycan biosynthesis
+ GO:0030244, cellulose biosynthesis
+ GO:0030327, prenylated protein catabolism
+ GO:0030328, prenylcysteine catabolism
+ GO:0030433, ER-associated protein catabolism
+ GO:0030574, collagen catabolism
+ GO:0030579, ubiquitin-dependent SMAD protein catabolism
+ GO:0042082, GSI anchor biosynthesis
+ GO:0042159, lipoprotein catabolism
+ GO:0042540, hemoglobin catabolism
+ GO:0042544, melibiose biosynthesis
+ GO:0042655, activation of JUNKKK
+ GO:0042787, protein ubiquitination during ubiquitin-dependent protein catabolism
+ GO:0042798, protein neddylation during NEDD8 class-dependent protein catabolism
+ GO:0042902, peptidoglycan-protein cross-linking via L-threonyl-pentaglycyl-murein
+ GO:0042976, activation of JAK protein
+ GO:0042977, tyrosine phosphorylation of JAK2 protein
+ GO:0042987, amyloid precursor protein catabolism
+ GO:0043043, peptide biosynthesis
+ GO:0043048, dolichyl monophosphate biosynthesis
+ GO:0043161, proteasomal ubiquitin-dependent protein catabolism
+ GO:0043162, ubiquitin-dependent protein catabolism via the multivesicular body pathway
+ GO:0045017, glycerolipid biosynthesis
+ GO:0045173, O-sialoglycoprotein catabolism
+ GO:0045192, low-density lipoprotein catabolism
+ GO:0045193, acetylated low-density lipoprotein catabolism
+ GO:0045194, oxidized low-density lipoprotein catabolism
+ GO:0045226, extracellular polysaccharide biosynthesis
+ GO:0045227, capsule polysaccharide biosynthesis
+ GO:0045228, slime layer polysaccharide biosynthesis
+ GO:0045337, farnesyl diphosphate biosynthesis
+ GO:0045339, farnesyl diphosphate catabolism
+ GO:0045489, pectin biosynthesis
+ GO:0045492, xylan biosynthesis
+ GO:0046351, disaccharide biosynthesis
+ GO:0046354, mannan biosynthesis
+ GO:0046460, neutral lipid biosynthesis
+ GO:0046461, neutral lipid catabolism
+ GO:0046466, membrane lipid catabolism
+ GO:0046467, membrane lipid biosynthesis
+ GO:0046474, glycerophospholipid biosynthesis
+ GO:0046475, glycerophospholipid catabolism
+ GO:0046476, glycosylceramide biosynthesis
+ GO:0046477, glycosylceramide catabolism
+ GO:0046479, glycosphingolipid catabolism
+ GO:0046489, phosphoinositide biosynthesis
+ GO:0046503, glycerolipid catabolism
+ GO:0046511, sphinganine biosynthesis
+ GO:0046513, ceramide biosynthesis
+ GO:0046514, ceramide catabolism
+ GO:0046520, sphingoid biosynthesis
+ GO:0046521, sphingoid catabolism
+ GO:0050493, GPI anchor biosynthesis via N-threonyl-glycosylphosphatidylinositolethanolamine
+ GO:0050494, GSI anchor biosynthesis via N-glycyl-glycosylsphingolipidinositolethanolamine
+ GO:0050992, dimethylallyl diphosphate biosynthesis
+ GO:0051072, 4,6-pyruvylated galactose residue biosynthesis
Terms movements under GO Slim term 'response to biotic stimulus ; GO:0009607'
- GO:0006984, ER-nuclear signaling pathway
- GO:0006988, unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor
- GO:0006989, unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase
Terms movements under GO Slim term 'response to endogenous stimulus ; GO:0009719'
- GO:0006266, DNA ligation
Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043'
+ GO:0000065, nuclear migration (sensu Saccharomyces)
- GO:0007085, nuclear membrane vesicle binding to chromatin
+ GO:0007097, nuclear migration
+ GO:0035046, pronuclear migration
+ GO:0035190, syncytial nuclear migration
+ GO:0035191, nuclear axial expansion
+ GO:0035192, nuclear cortical migration
Terms movements under GO Slim term 'protein metabolism ; GO:0019538'
- GO:0006459, binding unfolded ER proteins
+ GO:0006934, substrate-bound cell migration, adhesion receptor recycling
+ GO:0007021, tubulin folding
+ GO:0007022, chaperonin-mediated tubulin folding
+ GO:0007023, post-chaperonin tubulin folding pathway
+ GO:0007024, alpha-tubulin folding
+ GO:0007025, beta-tubulin folding
+ GO:0016562, peroxisome receptor recycling
Terms movements under GO Slim term 'growth ; GO:0040007'
+ GO:0007446, imaginal disc growth
+ GO:0045570, regulation of imaginal disc growth
+ GO:0045571, negative regulation of imaginal disc growth
+ GO:0045572, positive regulation of imaginal disc growth
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
1000369 Fixed ribokinase parent [none]
536264 Duplicate ABC transporter component terms [none]
729414 Fixed Plant development terms, page 2 [none]
730743 Fixed Chaperone children for obsoletion [none]
815230 Accepted new term suggestions from Incyte editors GO:0043034 GO:0043083-43084 GO:0043088-43089 GO:0043132 GO:0043135-43148 GO:0043179-43180
841506 Fixed ERAD and UPR [none]
845102 Accepted H4/H2A acetyltranserase activity GO:0043166 GO:0043189
869662 Fixed chaperone activity tree reorg GO:0051082-51087
876432 Accepted Suggested modifications to pole plasm and polar granule term GO:0043186
908374 Fixed gene silencing /chromatin silencing [none]
926286 Fixed GO:0007170 process or function ? [none]
932425 Fixed ABC transporters GO:0043190-43192
939385 Fixed GO:0009725 : response to hormone stimulus [none]
945180 Accepted sequestration of sodium ion GO:0043182
952478 Fixed infrastructure for development node GO:0048468-48469
957039 Accepted part-of axon GO:0043194-43196
957044 Accepted part-of dendrite GO:0043197-43198
958022 Accepted constitutive/PMA-inducible membrane protein ectodomain... GO:0051088-51089
960063 Fixed endocytosis true path violation GO:0048488-48491
960722 Fixed nuclear migration / nuclear positioning GO:0035190-35192
961811 Fixed Def. for GO:0045261 is wrong [none]
964332 Fixed oskar terms in oogenesis [none]
964859 Accepted 'positive regulation of gene transcription GO:0043193
964865 Accepted activation of transcription factor activity GO:0051090-51092
965473 Accepted expansion of VEGFR binding term GO:0043183-43185
966599 Fixed Monocot flower development terms [none]
968383 None GPI-GnT complex GO:0000506
970229 Fixed definition of nuclear division ; GO:0000280 [none]
974032 Fixed threonine-phosphate decarboxylase GO:0048472
978135 Fixed detection of pests, pathogens and parasites [none]
979611 Accepted ntr: septum edging GO:0043187-43188
981408 Fixed viral receptor activity [1618] parentage [none]
981411 Accepted parentage of 7200 BP G-protein signaling, coupled to IP3 sec [none]
981420 Fixed add parent BP:phosphorylation 16310? [none]
981694 Accepted new terms: chlamydospore formation and hyphal tip GO:0001410-01411
982645 Accepted miRNA-mediated gene silencing GO:0035194-35198
982662 Accepted salt aversion/taste aversion GO:0035199
982740 Accepted CNS metamorphosis GO:0035193
985887 Accepted regulation of helicase activity GO:0051095-51097
986016 Accepted positive regulation of DNA ligation GO:0051102-51107
986039 Accepted synonym for double-strand break repair...GO:0000724 [none]
986225 Fixed bacterial catalase-peroxidase activity [none]
986493 Accepted query: microtubule/kinetochore interaction [none]
986502 Accepted synonym for DNA unwinding [none]
987826 Fixed 3 obol relationships GO:0048475
987866 Accepted Synonym for ribonuclease H activity [none]
987949 Accepted regulation of DNA binding GO:0051098-51101
987989 Invalid segment specification ; GO:0007379 and its children [none]
987996 Fixed segment specification ; GO:0007379 and its children [none]
988259 Accepted synonym for tocopherol-O-methyltransferase [none]
989315 Accepted synonym for oxidoreductase activity [none]
989557 Accepted switch name synonym:DNA damage checkpoint [none]
989661 Accepted term merge:endodeoxyribonuclease RUS activity [none]
989702 Accepted ntr: Holliday junction resolvase complex GO:0048476
989714 Accepted general oogenesis term needed GO:0048477
989727 Accepted ntr: replication fork protection GO:0048478
991214 Fixed enteric nervous system development GO:0048483-48486
992027 Fixed GO:6444-nascent polypeptide association / protein refolding [none]
993809 Accepted cell competition GO:0035212
994423 Accepted spermathecum morphogenesis GO:0035211
994478 Fixed DNA topological change [none]
994715 Fixed new term for 'beta-tubulin binding', ll to 2 existing terms GO:0048487
994754 Accepted P granules need a new definition--see SF entry 876432 [none]
995498 Accepted sulfate binding GO:0043199
996184 Accepted response to leucine GO:0043200-43201
996213 Accepted apoptotic program: child request GO:0030972
996640 Fixed Confusion in terms acyl-CoA or acyl binding, acyl binding [none]
997905 Fixed Development: larval/pupal development GO:0035209-35210
997925 Fixed Development: oogenesis term [none]
997965 Fixed Plants: jasmonic acid/ethylene-dependent systemic resistance [none]
998297 Accepted Regulation of Development (GO:0050793) GO:0051093-51094
Statistics:
Component: 1441 terms, 90.1% defined (1299 terms defined)
Function: 7392 terms, 88.5% defined (6545 terms defined)
Process: 8904 terms, 94.2% defined (8387 terms defined)
Total: 17737 terms, 91.5% defined (16231 terms defined)
Term errors
GO:0004891, glycine-inhibited chloride channel activity
- definition removed
GO:0004931, ATP-gated cation channel activity
- definition removed
GO:0004970, inotropic glutamate receptor activity
- definition removed
GO:0004971, alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
- definition removed
GO:0004972, N-methyl-D-aspartate selective glutamate receptor activity
- definition removed
GO:0005232, serotonin-activated cation-selective channel activity
- definition removed
GO:0005234, glutamate-gated ion channel activity
- definition removed
GO:0008068, glutamate-gated chloride channel activity
- definition removed
GO:0015277, kainate selective glutamate receptor activity
- definition removed