Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2012-01-14.obo; date: 13:01:2012 15:54; CVS revision: 1.2512
  • file 2 (new): go-2012-01-21.obo; date: 20:01:2012 15:15; CVS revision: 1.2535

New terms

ID name namespace
GO:0002926 tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis. biological_process
GO:0002927 archaeosine-tRNA biosynthetic process biological_process
GO:0036093 germ cell proliferation biological_process
GO:0036094 small molecule binding molecular_function
GO:0038061 NIK/NF-kappaB cascade biological_process
GO:0038062 protein tyrosine kinase collagen receptor activity molecular_function
GO:0038063 collagen-activated tyrosine kinase receptor signaling pathway biological_process
GO:0038064 collagen receptor activity molecular_function
GO:0038065 collagen-activated signaling pathway biological_process
GO:0044466 glutaryl-CoA hydrolase activity molecular_function
GO:0044467 glial cell line-derived neurotrophic factor secretion biological_process
GO:0044468 envenomation resulting in modulation of blood coagulation in other organism biological_process
GO:0044469 envenomation resulting in positive regulation of blood coagulation in other organism biological_process
GO:0044470 envenomation resulting in negative regulation of blood coagulation in other organism biological_process
GO:0044471 envenomation resulting in pore formation in membrane of other organism biological_process
GO:0044472 envenomation resulting in modulation of calcium channel activity in other organism biological_process
GO:0044473 envenomation resulting in negative regulation of calcium channel activity in other organism biological_process
GO:0044474 envenomation resulting in negative regulation of voltage-gated calcium channel activity in other organism biological_process
GO:0044475 envenomation resulting in negative regulation of high voltage-gated calcium channel activity in other organism biological_process
GO:0044476 envenomation resulting in negative regulation of low voltage-gated calcium channel activity in other organism biological_process
GO:0044477 envenomation resulting in negative regulation of platelet aggregation in other organism biological_process
GO:0044478 envenomation resulting in positive regulation of platelet aggregation in other organism biological_process
GO:0044479 envenomation resulting in modulation of mast cell degranulation in other organism biological_process
GO:0044480 envenomation resulting in positive regulation of mast cell degranulation in other organism biological_process
GO:0044481 envenomation resulting in proteolysis in other organism biological_process
GO:0044482 envenomation resulting in blood vessel extracellular matrix damage, causing hemorrhagic damage in other organism biological_process
GO:0044483 envenomation resulting in impairment of hemostasis in other organism biological_process
GO:0097221 MADS box-forkhead transcription factor complex cellular_component
GO:1900013 cellular response to potassium ion involved in chemotaxis to cAMP biological_process
GO:1900014 cellular response to calcium ion involved in chemotaxis to cAMP biological_process
GO:1900031 regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling biological_process
GO:1900034 regulation of cellular response to heat biological_process
GO:1900035 negative regulation of cellular response to heat biological_process
GO:1900036 positive regulation of cellular response to heat biological_process
GO:1900037 regulation of cellular response to hypoxia biological_process
GO:1900038 negative regulation of cellular response to hypoxia biological_process
GO:1900039 positive regulation of cellular response to hypoxia biological_process
GO:1900040 regulation of interleukin-2 secretion biological_process
GO:1900041 negative regulation of interleukin-2 secretion biological_process
GO:1900042 positive regulation of interleukin-2 secretion biological_process
GO:1900044 regulation of protein K63-linked ubiquitination biological_process
GO:1900045 negative regulation of protein K63-linked ubiquitination biological_process
GO:1900046 regulation of hemostasis biological_process
GO:1900047 negative regulation of hemostasis biological_process
GO:1900048 positive regulation of hemostasis biological_process
GO:1900049 regulation of histone exchange biological_process
GO:1900050 negative regulation of histone exchange biological_process
GO:1900051 positive regulation of histone exchange biological_process
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:1900053 negative regulation of retinoic acid biosynthetic process biological_process
GO:1900054 positive regulation of retinoic acid biosynthetic process biological_process

Obsoletions

None

Term merges

None

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name def comment synonym is_a intersection_of relationship
Term ID name def comment synonym is_a intersection_of relationship
GO:0000124
SAGA complex		 1 A
GO:0000166
nucleotide binding		 1 D, 1 A
GO:0000185
activation of MAPKKK activity		 1 A
GO:0000186
activation of MAPKK activity		 1 A
GO:0001875
lipopolysaccharide receptor activity		 C
GO:0001882
nucleoside binding		 1 D, 1 A
GO:0002054
nucleobase binding		 1 D, 1 A
GO:0002176
male germ cell proliferation		 2 D, 1 A 1 D
GO:0003130
BMP signaling pathway involved in heart induction		 C
GO:0003154
BMP signaling pathway involved in determination of left/right symmetry		 C
GO:0003269
BMP signaling pathway involved in regulation of secondary heart field cardioblast proliferation		 C
GO:0003302
transforming growth factor beta receptor signaling pathway involved in heart jogging		 C
GO:0003303
BMP signaling pathway involved in heart jogging		 C
GO:0003434
BMP signaling pathway involved in growth plate cartilage chondrocyte development		 C
GO:0004704
NF-kappaB-inducing kinase activity		 1 A
GO:0004970
ionotropic glutamate receptor activity		 C 1 A
GO:0007167
enzyme linked receptor protein signaling pathway		 C
GO:0007168
receptor guanylyl cyclase signaling pathway		 C
GO:0007169
transmembrane receptor protein tyrosine kinase signaling pathway		 C
GO:0007178
transmembrane receptor protein serine/threonine kinase signaling pathway		 C
GO:0007179
transforming growth factor beta receptor signaling pathway		 C
GO:0007185
transmembrane receptor protein tyrosine phosphatase signaling pathway		 C
GO:0007186
G-protein coupled receptor signaling pathway		 C
GO:0007215
glutamate receptor signaling pathway		 C C 1 A
GO:0007216
G-protein coupled glutamate receptor signaling pathway		 C
GO:0007219
Notch signaling pathway		 C
GO:0007224
smoothened signaling pathway		 C
GO:0007229
integrin-mediated signaling pathway		 C
GO:0007249
I-kappaB kinase/NF-kappaB cascade		 C
GO:0007250
activation of NF-kappaB-inducing kinase activity		 1 A
GO:0007254
JNK cascade		 2 D, 1 A
GO:0007256
activation of JNKK activity		 1 A
GO:0008063
Toll signaling pathway		 C
GO:0008101
decapentaplegic signaling pathway		 C
GO:0008293
torso signaling pathway		 C
GO:0019842
vitamin binding		 1 D, 1 A
GO:0021777
BMP signaling pathway involved in spinal cord association neuron specification		 C
GO:0021919
BMP signaling pathway involved in spinal cord dorsal/ventral patterning		 C
GO:0022024
BMP signaling pathway involved in forebrain neuron fate commitment		 C
GO:0022025
leukemia inhibitory factor signaling pathway involved in forebrain neuron fate commitment		 C
GO:0030193
regulation of blood coagulation		 1 A
GO:0030194
positive regulation of blood coagulation		 1 A
GO:0030195
negative regulation of blood coagulation		 1 A
GO:0030509
BMP signaling pathway		 C
GO:0031663
lipopolysaccharide-mediated signaling pathway		 C
GO:0032924
activin receptor signaling pathway		 C
GO:0033209
tumor necrosis factor-mediated signaling pathway		 C
GO:0033210
leptin-mediated signaling pathway		 C
GO:0033219
urea binding		 1 A
GO:0035235
ionotropic glutamate receptor signaling pathway		 C
GO:0035385
Roundabout signaling pathway		 C
GO:0035463
transforming growth factor beta receptor signaling pathway involved in determination of left/right asymmetry		 C
GO:0035655
interleukin-18-mediated signaling pathway		 C
GO:0035691
macrophage migration inhibitory factor signaling pathway		 C
GO:0035723
interleukin-15-mediated signaling pathway		 C
GO:0035738
envenomation		 C
GO:0035771
interleukin-4-mediated signaling pathway		 C
GO:0035772
interleukin-13-mediated signaling pathway		 C
GO:0035806
modulation of blood coagulation in other organism		 1 A
GO:0035807
positive regulation of blood coagulation in other organism		 1 A
GO:0035892
modulation of platelet aggregation in other organism		 1 A
GO:0035893
negative regulation of platelet aggregation in other organism		 1 A
GO:0035895
modulation of mast cell degranulation in other organism		 1 A
GO:0035896
positive regulation of mast cell degranulation in other organism		 1 A
GO:0035897
proteolysis in other organism		 1 A
GO:0035899
negative regulation of blood coagulation in other organism		 1 A
GO:0035915
pore formation in membrane of other organism		 C C 1 A 1 D, 2 A
GO:0035916
modulation of calcium channel activity in other organism		 1 A
GO:0035917
negative regulation of calcium channel activity in other organism		 1 A
GO:0036038
TCTN-B9D complex		 C C 3 A
GO:0038007
netrin-activated signaling pathway		 C
GO:0038025
reelin receptor activity		 C
GO:0038026
reelin-mediated signaling pathway		 C
GO:0038042
dimeric G-protein coupled receptor signaling pathway		 C
GO:0038043
interleukin-5-mediated signaling pathway		 C
GO:0038058
TNFSF11 receptor activity		 C
GO:0042655
activation of JNKKK activity		 1 A
GO:0043177
organic acid binding		 1 D, 1 A
GO:0043178
alcohol binding		 1 D, 1 A
GO:0044281
small molecule metabolic process		 C A
GO:0044282
small molecule catabolic process		 C A
GO:0044283
small molecule biosynthetic process		 C A
GO:0044359
modulation of molecular function in other organism		 1 A
GO:0044362
negative regulation of molecular function in other organism		 1 A
GO:0044363
modulation of potassium channel activity in other organism		 1 A
GO:0044365
envenomation resulting in modulation of platelet aggregation in other organism		 C 1 A 1 D, 1 A
GO:0045500
sevenless signaling pathway		 C
GO:0046328
regulation of JNK cascade		 2 D, 1 A
GO:0046329
negative regulation of JNK cascade		 2 D, 1 A
GO:0046330
positive regulation of JNK cascade		 2 D, 1 A
GO:0048861
leukemia inhibitory factor signaling pathway		 C
GO:0051389
inactivation of MAPKK activity		 1 A
GO:0051390
inactivation of MAPKKK activity		 1 A
GO:0051927
negative regulation of calcium ion transport via voltage-gated calcium channel activity		 1 D, 1 A
GO:0052204
negative regulation of molecular function in other organism involved in symbiotic interaction		 1 D
GO:0052205
modulation of molecular function in other organism involved in symbiotic interaction		 1 D
GO:0060337
type I interferon-mediated signaling pathway		 C
GO:0060490
lateral sprouting involved in lung morphogenesis		 2 A
GO:0060599
lateral sprouting involved in mammary gland duct morphogenesis		 2 A
GO:0060660
epidermis morphogenesis involved in nipple formation		 2 A
GO:0060680
lateral sprouting involved in ureteric bud morphogenesis		 2 A
GO:0060797
transforming growth factor beta receptor signaling pathway involved in primary germ layer cell fate commitment		 C
GO:0060803
BMP signaling pathway involved in mesodermal cell fate specification		 C
GO:0060826
transforming growth factor beta receptor signaling pathway involved in neural plate anterior/posterior pattern formation		 C
GO:0060835
transforming growth factor receptor beta signaling pathway involved in oral/aboral axis specification		 C
GO:0060869
transmembrane receptor protein serine/threonine kinase signaling pathway involved in floral organ abscission		 C
GO:0061057
peptidoglycan recognition protein signaling pathway		 C
GO:0061149
BMP signaling pathway involved in ureter morphogenesis		 C
GO:0061151
BMP signaling pathway involved in renal system segmentation		 C
GO:0061312
BMP signaling pathway involved in heart development		 C
GO:0061353
BMP signaling pathway involved in Malpighian tubule cell chemotaxis		 C
GO:0061372
activin receptor signaling pathway involved in heart jogging		 C
GO:0070102
interleukin-6-mediated signaling pathway		 C
GO:0070106
interleukin-27-mediated signaling pathway		 C
GO:0070757
interleukin-35-mediated signaling pathway		 C
GO:0071847
TNFSF11-mediated signaling pathway		 C
GO:0071893
BMP signaling pathway involved in nephric duct formation		 C
GO:0090010
transforming growth factor beta receptor signaling pathway involved in primitive streak formation		 C
GO:0090247
cell motility involved in somitogenic axis elongation		 2 A
GO:2000728
regulation of mRNA export from nucleus in response to heat stress		 1 D, 1 A

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9208
9208 (100.0%) defined 		9212
9212 (100.0%) defined 		+4
cellular component 2949
2949 (100.0%) defined 		2950
2950 (100.0%) defined 		+1
biological process 21823
21823 (100.0%) defined 		21867
21867 (100.0%) defined 		+44
Obsolete 1609
(4.5% of total)		 1611
(4.5% of total)		 +2 (+0.1%)
Totals 33980
33980 (100.0%) defined
35589 inc. obsoletes 		34029
34029 (100.0%) defined
35640 inc. obsoletes 		+51 (+0.1%)

Ontology report info