Gene Ontology
Ontology Comparison Report
==========================

Files used:
- file 1 (old): go-2012-01-07.obo; date: 06:01:2012 16:33; CVS revision: 1.2481
- file 2 (new): go-2012-01-14.obo; date: 13:01:2012 15:54; CVS revision: 1.2512

NEW TERMS
=========

ID	name	namespace
GO:0036089	cleavage furrow formation	biological_process
GO:0036090	cleavage furrow ingression	biological_process
GO:0036091	positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress	biological_process
GO:0036092	phosphatidylinositol-3-phosphate biosynthetic process	biological_process
GO:0038059	IKKalpha-IKKalpha complex	cellular_component
GO:0038060	nitric oxide-cGMP-mediated signaling pathway	biological_process
GO:0044458	motile cilium assembly	biological_process
GO:0044465	regulation of sensory perception of pain in another organism	biological_process
GO:0052867	phosphatidylinositol-1,4,5-trisphosphate 5-phosphatase activity	molecular_function
GO:0052868	protein-lysine lysyltransferase activity	molecular_function
GO:0061396	regulation of transcription from RNA polymerase II promoter in response to copper ion	biological_process
GO:0061397	positive regulation of transcription from RNA polymerase II promoter in response to copper ion	biological_process
GO:0061398	negative regulation of transcription from RNA polymerase II promoter in response to copper ion	biological_process
GO:0061399	positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion	biological_process
GO:0061400	positive regulation of transcription from RNA polymerase II promoter in response to calcium ion	biological_process
GO:0061401	positive regulation of transcription from RNA polymerase II promoter in response to a hypotonic environment	biological_process
GO:0061402	positive regulation of transcription from RNA polymerase II promoter in response to acidity	biological_process
GO:0061403	positive regulation of transcription from RNA polymerase II promoter in response to nitrosative stress	biological_process
GO:0061404	positive regulation of transcription from RNA polymerase II promoter in response to increased salt	biological_process
GO:0061405	positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure	biological_process
GO:0061406	positive regulation of transcription from RNA polymerase II promoter in response to glucose starvation	biological_process
GO:0061407	positive regulation of transcription from RNA polymerase II promoter in response to hydrogen peroxide	biological_process
GO:0061408	positive regulation of transcription from RNA polymerase II promoter in response to heat stress	biological_process
GO:0061409	positive regulation of transcription from RNA polymerase II promoter in response to freezing	biological_process
GO:0061410	positive regulation of transcription from RNA polymerase II promoter in response to ethanol	biological_process
GO:0061411	positive regulation of transcription from RNA polymerase II promoter in response to cold	biological_process
GO:0061412	positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation	biological_process
GO:0097210	response to gonadotropin-releasing hormone	biological_process
GO:0097211	cellular response to gonadotropin-releasing hormone	biological_process
GO:0097212	lysosomal membrane organization	biological_process
GO:0097213	regulation of lysosomal membrane permeability	biological_process
GO:0097214	positive regulation of lysosomal membrane permeability	biological_process
GO:0097215	negative regulation of lysosomal membrane permeability	biological_process
GO:0097216	guanosine tetraphosphate binding	molecular_function
GO:0097217	sieve area	cellular_component
GO:0097218	sieve plate	cellular_component
GO:0097219	compound sieve plate	cellular_component
GO:0097220	simple sieve plate	cellular_component
GO:1900003	regulation of serine-type endopeptidase activity	biological_process
GO:1900004	negative regulation of serine-type endopeptidase activity	biological_process
GO:1900005	positive regulation of serine-type endopeptidase activity	biological_process
GO:1900006	positive regulation of dendrite development	biological_process
GO:1900007	regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging	biological_process
GO:1900008	negative regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging	biological_process
GO:1900009	positive regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging	biological_process
GO:1900010	regulation of corticotropin-releasing hormone receptor activity	biological_process
GO:1900011	negative regulation of corticotropin-releasing hormone receptor activity	biological_process
GO:1900012	positive regulation of corticotropin-releasing hormone receptor activity	biological_process
GO:1900015	regulation of cytokine production involved in inflammatory response	biological_process
GO:1900016	negative regulation of cytokine production involved in inflammatory response	biological_process
GO:1900017	positive regulation of cytokine production involved in inflammatory response	biological_process
GO:1900018	phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex	biological_process
GO:1900019	regulation of protein kinase C activity	biological_process
GO:1900020	positive regulation of protein kinase C activity	biological_process
GO:1900022	regulation of D-erythro-sphingosine kinase activity	biological_process
GO:1900023	positive regulation of D-erythro-sphingosine kinase activity	biological_process
GO:1900024	regulation of substrate adhesion-dependent cell spreading	biological_process
GO:1900025	negative regulation of substrate adhesion-dependent cell spreading	biological_process
GO:1900026	positive regulation of substrate adhesion-dependent cell spreading	biological_process
GO:1900027	regulation of ruffle assembly	biological_process
GO:1900028	negative regulation of ruffle assembly	biological_process
GO:1900029	positive regulation of ruffle assembly	biological_process
GO:1900030	regulation of pectin biosynthetic process	biological_process
GO:1900032	regulation of trichome patterning	biological_process
GO:1900033	negative regulation of trichome patterning	biological_process
GO:2001289	lipid X metabolic process	biological_process


OBSOLETIONS
===========

None


TERM MERGES
===========

None


TERM CHANGES
============

KEY:  'A' : added, 'D' : deleted, 'C' : changed

Term ID	name	def	comment	synonym	xref	is_a	relationship	
GO:0000155							1 A	
GO:0003376	C	C	A	1 D, 7 A	1 A	1 D, 1 A		
GO:0003377	C	C		1 D, 2 A				
GO:0003378	C	C		1 D, 2 A				
GO:0004190				1 A				
GO:0004430							1 D	
GO:0004702							1 A	
GO:0004716							1 A	
GO:0004728							1 A	
GO:0004897		C						
GO:0004923		C						
GO:0004967							1 A	
GO:0004968		C		1 A			1 A	
GO:0007166	C			1 A				
GO:0007249					1 D, 1 A			
GO:0007250				1 D, 2 A				
GO:0007263		C		1 A		1 D, 1 A		
GO:0008385				2 A				
GO:0015056							1 A	
GO:0016303						1 A	1 A	
GO:0016307				1 A				
GO:0016316							1 A	
GO:0016500							1 A	
GO:0016503							1 A	
GO:0019221		C						
GO:0019722		C						
GO:0019932		C						
GO:0019933		C						
GO:0019934		C						
GO:0019935		C						
GO:0023014	C	C		1 A		1 A		
GO:0023015	C	C		1 D, 2 A				
GO:0023016	C	C		1 A				
GO:0023035		C						
GO:0023045	C	C		1 A				
GO:0031530		C		1 A				
GO:0033173	C	C		1 D, 2 A				
GO:0033211		C						
GO:0035004		C						
GO:0035005						1 A		
GO:0035014							1 A	
GO:0035689		C						
GO:0035722		C						
GO:0038027		C						
GO:0038036							1 A	
GO:0039537				5 A		1 A		
GO:0043812						1 A		
GO:0043813							1 A	
GO:0046934						1 A		
GO:0048016		C						
GO:0051448		C		1 A				
GO:0052742							1 A	
GO:0052813							1 A	
GO:0052866				1 A				
GO:0060333		C						
GO:0061311	C	C		1 A				
GO:0070098		C						
GO:0070120		C						
GO:0070498		C						
GO:0070884	C	C		1 D, 2 A				
GO:0070885	C	C		5 D, 7 A				
GO:0070886	C	C		6 D, 7 A				
GO:2000819								



FILE STATS
==========

Term counts for the old and new files

Ontology	Old file	New file	Change
molecular function	9205	9208	+3
	(9205 defined)	(9208 defined)	
cellular component	2944	2949	+5
	(2944 defined)	(2949 defined)	
biological process	21765	21823	+58
	(21765 defined)	(21823 defined)	

Obsolete	1609	1609	0
	(4.5% of total)	 (4.5% of total)	(0.0%)

Totals	33914	33980	+66 (+0.2%)
	33914 (100.0%) defined	33980 (100.0%) defined	
	35523 inc. obs	35589 inc. obs