Gene Ontology: Ontology Comparison Report

Files used:

file 1 (old): go-2011-10-01.obo; date: 30:09:2011 14:21; CVS revision: 1.2291
file 2 (new): go-2011-10-08.obo; date: 07:10:2011 17:16; CVS revision: 1.2307

New terms
Obsoletions
Term merges
Term changes
File Stats

New terms

ID	name	namespace
GO:0002197	xanthine dehydrogenase complex	cellular_component
GO:0036009	protein-glutamine N-methyltransferase activity	molecular_function
GO:0036010	protein localization in endosome	biological_process
GO:0036011	imaginal disc-derived leg segmentation	biological_process
GO:0052759	coenzyme F420-dependent 2,4,6-trinitrophenol hydride reductase activity	molecular_function
GO:0052760	coenzyme F420-dependent 2,4-dinitrophenol reductase activity	molecular_function
GO:0052761	exo-1,4-beta-D-glucosaminidase activity	molecular_function
GO:0052762	gellan lyase activity	molecular_function
GO:0052763	ulvan lyase activity	molecular_function
GO:0052764	exo-oligoalginate lyase activity	molecular_function
GO:0052765	reduced coenzyme F420 oxidase activity	molecular_function
GO:0052766	mannoside alpha-1,4-mannosidase activity	molecular_function
GO:0052767	mannosyl-oligosaccharide 1,6-alpha-mannosidase activity	molecular_function
GO:0052768	mannosyl-oligosaccharide 1,3-alpha-mannosidase activity	molecular_function
GO:0052769	beta-6-sulfate-N-acetylglucosaminidase activity	molecular_function
GO:0052770	coenzyme F390-A hydrolase activity	molecular_function
GO:0052771	coenzyme F390-G hydrolase activity	molecular_function
GO:0052772	brefeldin A esterase activity	molecular_function
GO:0052773	diacetylchitobiose deacetylase activity	molecular_function
GO:0052774	glucosyl-N-acetylglucosamine glucosaminidase activity	molecular_function
GO:0052775	endo-1,3-alpha-L-rhamnosidase activity	molecular_function
GO:0052776	diacetylchitobiose catabolic process to glucosamine and acetate	biological_process
GO:0052777	diacetylchitobiose catabolic process	biological_process
GO:0052778	diacetylchitobiose metabolic process	biological_process
GO:0052779	amino disaccharide metabolic process	biological_process
GO:0052780	chitobiose metabolic process	biological_process
GO:0052781	chitobiose catabolic process	biological_process
GO:0052782	amino disaccharide catabolic process	biological_process
GO:0052783	reuteran metabolic process	biological_process
GO:0052784	reuteran biosynthetic process	biological_process
GO:0052785	cellulose catabolism by endo-processive cellulases	biological_process
GO:0052786	alpha-linked polysaccharide catabolism to maltotriose	biological_process
GO:0052787	alpha-linked polysaccharide catabolism to maltopentaose	biological_process
GO:0052788	d-4,5 unsaturated beta-glucuronyl hydrolase activity	molecular_function
GO:0052789	mannan 1,3-beta-mannosidase activity	molecular_function
GO:0052790	chitooligosaccharide deacetylase activity	molecular_function
GO:0052791	3-deoxy-D-glycero-D-galacto-2-nonulosonic acid hydrolase activity	molecular_function
GO:0052792	endo-xylogalacturonan hydrolase activity	molecular_function
GO:0052793	pectin acetylesterase activity	molecular_function
GO:0052794	exo-alpha-(2,3)-sialidase activity	molecular_function
GO:0052795	exo-alpha-(2,6)-sialidase activity	molecular_function
GO:0052796	exo-alpha-(2,8)-sialidase activity	molecular_function
GO:0052797	4-O-methyl-glucuronoyl methylesterase activity	molecular_function
GO:0052798	beta-galactoside alpha-2,3-sialyltransferase activity	molecular_function
GO:0052799	coenzyme F420-dependent bicyclic nitroimidazole catabolic process	molecular_function
GO:0052800	bicyclic nitroimidazole catabolic process	molecular_function
GO:0052801	bicyclic nitroimidazole metabolic process	molecular_function
GO:0052802	nitroimidazole metabolic process	molecular_function
GO:0052803	imidazole metabolic process	molecular_function
GO:0052804	nitroimidazole catabolic process	molecular_function
GO:0052805	imidazole catabolic process	molecular_function
GO:0052806	sulfite reductase (coenzyme F420) activity	molecular_function
GO:0052807	aflatoxin reductase (coenzyme F420) activity	molecular_function
GO:0052808	reduced coenzyme F420:NADP+ oxidoreductase activity	molecular_function
GO:0052809	acharan sulfate lyase activity	molecular_function
GO:0090415	7-hydroxymethyl chlorophyll a reductase activity	molecular_function
GO:0097169	AIM2 inflammasome complex	cellular_component
GO:0097170	ADP-L-glycero-beta-D-manno-heptose metabolic process	biological_process
GO:0097171	ADP-L-glycero-beta-D-manno-heptose biosynthetic process	biological_process
GO:0097172	N-acetylmuramic acid metabolic process	biological_process
GO:0097173	N-acetylmuramic acid catabolic process	biological_process
GO:0097174	1,6-anhydro-N-acetyl-beta-muramic acid metabolic process	biological_process
GO:0097175	1,6-anhydro-N-acetyl-beta-muramic acid catabolic process	biological_process
GO:2001109	regulation of lens epithelial cell proliferation	biological_process
GO:2001110	negative regulation of lens epithelial cell proliferation	biological_process
GO:2001111	positive regulation of lens epithelial cell proliferation	biological_process
GO:2001112	regulation of cellular response to hepatocyte growth factor stimulus	biological_process
GO:2001113	negative regulation of cellular response to hepatocyte growth factor stimulus	biological_process
GO:2001114	positive regulation of cellular response to hepatocyte growth factor stimulus	biological_process

Obsoletions

ID	name	namespace
GO:0033747	versatile peroxidase activity	molecular_function
GO:0035980	invasive growth in response to nitrogen limitation	biological_process

Term merges

None

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID	name	def	comment	synonym	xref	is_a	relationship	is_obsolete	replaced_by	consider
Term ID	name	def	comment	synonym	xref	is_a	relationship	is_obsolete	replaced_by	consider
GO:0002061 pyrimidine base binding				1 D, 1 A
GO:0002189 ribose phosphate diphosphokinase complex				1 D, 2 A
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity	C
GO:0004559 alpha-mannosidase activity				3 D, 3 A
GO:0005041 low-density lipoprotein receptor activity				1 D, 1 A
GO:0005183 gonadotropin hormone-releasing hormone activity
GO:0006497 protein lipidation				1 D
GO:0007271 synaptic transmission, cholinergic
GO:0008373 sialyltransferase activity		C			1 D
GO:0009025 tagatose-bisphosphate aldolase activity				1 D
GO:0009799 specification of symmetry				1 D
GO:0010017 red or far-red light signaling pathway				2 D, 2 A
GO:0010087 phloem or xylem histogenesis				1 D
GO:0014069 postsynaptic density
GO:0016161 beta-amylase activity		C
GO:0016348 imaginal disc-derived leg joint morphogenesis							1 D, 1 A
GO:0016985 mannan endo-1,4-beta-mannosidase activity				4 D, 4 A
GO:0016996 endo-alpha-(2,8)-sialidase activity	C
GO:0018532 5,10-methenyl-5,6,7,8-tetrahydromethanopterin dehydrogenase activity	C			1 D, 3 A
GO:0018537 coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase activity		C
GO:0018867 alpha-pinene metabolic process
GO:0018868 2-aminobenzenesulfonate metabolic process
GO:0018871 1-aminocyclopropane-1-carboxylate metabolic process
GO:0018872 arsonoacetate metabolic process
GO:0018873 atrazine metabolic process
GO:0018882 (+)-camphor metabolic process
GO:0018885 carbon tetrachloride metabolic process
GO:0018889 2-chloro-N-isopropylacetanilide metabolic process
GO:0018898 2,4-dichlorobenzoate metabolic process
GO:0018902 1,3-dichloro-2-propanol metabolic process
GO:0018903 1,3-dichloropropene metabolic process
GO:0018917 fluorene metabolic process
GO:0018920 glyphosate metabolic process
GO:0018921 3-hydroxybenzyl alcohol metabolic process
GO:0018922 iprodione metabolic process
GO:0018923 limonene metabolic process
GO:0018928 methyl ethyl ketone metabolic process
GO:0018937 nitroglycerin metabolic process
GO:0018938 2-nitropropane metabolic process
GO:0018952 parathion metabolic process
GO:0018955 phenanthrene metabolic process
GO:0018956 phenanthrene catabolic process via trans-9(R),10(R)-dihydrodiolphenanthrene
GO:0018957 phenanthrene catabolic process via trans-9(S),10(S)-dihydrodiolphenanthrene
GO:0018961 pentachlorophenol metabolic process
GO:0018963 phthalate metabolic process
GO:0018965 s-triazine compound metabolic process
GO:0018966 styrene metabolic process
GO:0018970 toluene metabolic process
GO:0018983 Z-phenylacetaldoxime metabolic process
GO:0019339 parathion catabolic process
GO:0019381 atrazine catabolic process
GO:0019383 (+)-camphor catabolic process
GO:0019490 2-aminobenzenesulfonate desulfonation
GO:0021767 mammillary body development				1 D
GO:0022809 mobile ion carrier activity		C
GO:0030089 phycobilisome
GO:0030114 slime layer
GO:0030268 methylenetetrahydromethanopterin dehydrogenase activity		C
GO:0030570 pectate lyase activity		C
GO:0031216 neopullulanase activity		C
GO:0031955 short-chain fatty acid-CoA ligase activity				1 D, 1 A
GO:0031956 medium-chain fatty acid-CoA ligase activity				1 D, 1 A
GO:0032488 Cdc42 protein signal transduction				3 A
GO:0032620 interleukin-17 production
GO:0032799 low-density lipoprotein receptor particle metabolic process				1 D, 1 A
GO:0032803 regulation of low-density lipoprotein particle receptor catabolic process				1 D, 1 A
GO:0032805 positive regulation of low-density lipoprotein particle receptor catabolic process				1 D, 1 A
GO:0032909 regulation of transforming growth factor beta2 production				1 D, 1 A
GO:0032915 positive regulation of transforming growth factor beta2 production				1 D, 1 A
GO:0032916 positive regulation of transforming growth factor beta3 production				1 D, 1 A
GO:0033588 Elongator holoenzyme complex		C
GO:0033747 versatile peroxidase activity		C			3 D	1 D		A	1 A	1 A
GO:0033786 heptose-1-phosphate adenylyltransferase activity	C			1 A
GO:0033915 mannan 1,2-(1,3)-alpha-mannosidase activity		C				1 D, 1 A
GO:0033931 endogalactosaminidase activity						1 D, 1 A
GO:0033941 mannan exo-1,2-1,6-alpha-mannosidase activity		C				1 D, 1 A
GO:0033947 mannosylglycoprotein endo-beta-mannosidase activity						1 D, 1 A
GO:0033994 glucuronan lyase activity		C
GO:0033995 anhydrosialidase activity		C
GO:0033996 levan fructotransferase (DFA-IV-forming) activity		C
GO:0033997 inulin fructotransferase (DFA-I-forming) activity		C
GO:0033998 inulin fructotransferase (DFA-III-forming) activity		C
GO:0033999 chondroitin B lyase activity		C		1 A
GO:0034189 very-low-density lipoprotein particle binding		C		1 D, 1 A
GO:0034444 regulation of plasma lipoprotein particle oxidation				1 D, 1 A
GO:0034487 vacuolar amino acid transmembrane transport				1 D
GO:0034800 trinitrophenol dihydride denitratase activity	C	C		2 A
GO:0034914 trinitrophenol hydride denitratase activity	C	C		2 A
GO:0035287 head segmentation		C					1 A
GO:0035288 anterior head segmentation		C					1 A
GO:0035289 posterior head segmentation		C
GO:0035634 response to stilbenoid
GO:0035643 L-DOPA receptor activity
GO:0035801 adrenal cortex development
GO:0035878 nail development
GO:0035880 embryonic nail plate morphogenesis
GO:0035980 invasive growth in response to nitrogen limitation		C	A			1 D		A		1 A
GO:0040027 negative regulation of vulval development				1 D
GO:0042199 cyanuric acid metabolic process
GO:0042200 cyanuric acid catabolic process
GO:0042201 N-cyclopropylmelamine metabolic process
GO:0042202 N-cyclopropylmelamine catabolic process
GO:0042204 s-triazine compound catabolic process
GO:0042212 cresol metabolic process
GO:0042751 estivation
GO:0042807 central vacuole
GO:0042909 acridine transport
GO:0043130 ubiquitin binding		C
GO:0043371 negative regulation of CD4-positive, alpha-beta T cell differentiation				2 D
GO:0043738 reduced coenzyme F420 dehydrogenase activity		C
GO:0043794 formate dehydrogenase (coenzyme F420) activity		C
GO:0043910 ATP:coenzyme F420 adenylyltransferase activity	C			1 A
GO:0044197 Rel homology domain binding
GO:0045135 poly(beta-D-mannuronate) lyase activity		C
GO:0046539 histamine N-methyltransferase activity						1 A
GO:0046567 aphidicolan-16 beta-ol synthase activity		C		1 A	4 A	1 D, 1 A
GO:0046576 rhamnogalacturonan alpha-L-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronide lyase activity	C	C		1 A
GO:0047457 exo-(1,4)-alpha-D-glucan lyase activity		C
GO:0047487 oligogalacturonide lyase activity		C
GO:0047489 pectate disaccharide-lyase activity		C
GO:0047490 pectin lyase activity		C
GO:0047491 poly(alpha-L-guluronate) lyase activity		C
GO:0047492 xanthan lyase activity		C
GO:0048265 response to pain
GO:0048749 compound eye development
GO:0050454 coenzyme F420 hydrogenase activity		C
GO:0050955 thermoception
GO:0050956 electroception
GO:0050958 magnetoreception
GO:0050959 echolocation
GO:0050970 detection of electrical stimulus involved in magnetoreception
GO:0050977 magnetoreception by sensory perception of chemical stimulus
GO:0050978 magnetoreception by sensory perception of electrical stimulus
GO:0050979 magnetoreception by sensory perception of mechanical stimulus				1 D
GO:0050980 detection of light stimulus involved in magnetoreception
GO:0051060 pullulanase activity		C
GO:0051461 positive regulation of corticotropin secretion				1 D
GO:0051712 positive regulation of killing of cells of other organism				1 D
GO:0052667 phosphomethylethanolamine N-methyltransferase activity						1 A
GO:0052698 ergothioneine metabolic process
GO:0052699 ergothioneine biosynthetic process
GO:0052700 ergothioneine catabolic process
GO:0052704 ergothioneine biosynthesis from histidine via N-alpha,N-alpha,N-alpha-trimethyl-L-histidine
GO:0052747 sinapyl alcohol dehydrogenase activity
GO:0052748 baicalin beta-D-glucuronidase activity
GO:0052749 glucose-6-phosphate dehydrogenase (coenzyme F420) activity		C
GO:0052752 reduced coenzyme F420:heterodisulfide oxidoreductase activity		C		1 A
GO:0052753 propan-2-ol:coenzyme F420 oxidoreductase activity		C
GO:0052754 GTP:coenzyme F420 guanyltransferase activity
GO:0052755 reduced coenzyme F420:quinone oxidoreductase activity	C	C		1 D, 1 A
GO:0052756 chitobiose phosphorylase activity	C	C		4 D	1 D	1 D, 1 A
GO:0052757 chondroitin hydrolase activity	C	C		4 D, 1 A	1 D, 1 A	1 D, 1 A
GO:0052758 coenzyme F420-dependent 2,4,6-trinitrophenol reductase activity	C	C		4 D, 2 A	1 D, 2 A	1 D, 1 A
GO:0055099 response to high density lipoprotein particle stimulus				1 D
GO:0060965 negative regulation of gene silencing by miRNA				1 D, 1 A
GO:0070297 regulation of two-component signal transduction system (phosphorelay)				1 D, 1 A
GO:0070298 negative regulation of two-component signal transduction system (phosphorelay)				1 D
GO:0070299 positive regulation of two-component signal transduction system (phosphorelay)				1 D
GO:0070326 very-low-density lipoprotein particle receptor binding				1 D, 1 A
GO:0070497 6-carboxy-5,6,7,8-tetrahydropterin synthase activity		C			2 A	1 D, 1 A
GO:0070885 negative regulation of calcineurin-NFAT signaling pathway				1 D
GO:0070886 positive regulation of calcineurin-NFAT signaling pathway				1 D
GO:0072211 metanephric pyramids development				1 D, 1 A
GO:0072496 Pup ligase activity				1 D
GO:0072557 IPAF inflammasome complex		C
GO:0072558 NLRP1 inflammasome complex	C	C		1 A
GO:0072559 NLRP3 inflammasome complex	C	C		1 A
GO:0080101 phosphatidyl-N-dimethylethanolamine N-methyltransferase activity						1 A
GO:0090145 mitochondrial nucleoid organization involved in mitochondrial fission				1 D, 1 A
GO:0097086 amniotic stem cell differentiation
GO:0097087 interleukin-17A production
GO:0097088 interleukin-17F production
GO:0097089 methyl-branched fatty acid metabolic process
GO:0097092 polyacyltrehalose metabolic process
GO:0097093 polyacyltrehalose biosynthetic process
GO:0097094 craniofacial suture morphogenesis
GO:0097095 frontonasal suture morphogenesis
GO:0097096 facial suture morphogenesis
GO:0097097 nasal suture morphogenesis
GO:0097099 structural constituent of albumen
GO:0097100 supercoiled DNA binding
GO:0097162 MADS box domain binding
GO:0097166 lens epithelial cell proliferation
GO:2000631 regulation of pre-miRNA processing				1 D
GO:2000817 regulation of histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore				1 D
GO:2000873 regulation of histone H4 acetylation involved in response to DNA damage stimulus				1 D, 1 A

File Stats

Term counts for the old and new files
Ontology	Old file	New file	Change
molecular function	9107 9107 (100.0%) defined	9147 9147 (100.0%) defined	+40
cellular component	2898 2898 (100.0%) defined	2900 2900 (100.0%) defined	+2
biological process	21439 21439 (100.0%) defined	21464 21464 (100.0%) defined	+25
Obsolete	1585 (4.5% of total)	1587 (4.5% of total)	+2 (+0.1%)
Totals	33444 33444 (100.0%) defined 35029 inc. obsoletes	33511 33511 (100.0%) defined 35098 inc. obsoletes	+69 (+0.2%)

Ontology report info