Gene Ontology Ontology Comparison Report ========================== Files used: - file 1 (old): go-2011-08-06.obo; date: 05:08:2011 14:39; CVS revision: 1.2155 - file 2 (new): go-2011-08-13.obo; date: 12:08:2011 16:34; CVS revision: 1.2181 NEW TERMS ========= ID name namespace GO:0002190 cap-independent translational initiation biological_process GO:0002191 cap-dependent translational initiation biological_process GO:0002192 IRES-dependent translational initiation biological_process GO:0002193 MAML1-RBP-Jkappa- ICN1 complex cellular_component GO:0035970 peptidyl-threonine dephosphorylation biological_process GO:0035971 peptidyl-histidine dephosphorylation biological_process GO:0035973 aggrephagy biological_process GO:0044350 micropinocytosis biological_process GO:0044351 macropinocytosis biological_process GO:0044352 pinosome cellular_component GO:0044353 micropinosome cellular_component GO:0044354 macropinosome cellular_component GO:0044355 clearance of foreign intracellular DNA biological_process GO:0044356 clearance of foreign intracellular DNA by conversion of DNA cytidine to uridine biological_process GO:0052711 ergothioneine biosynthesis from N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biological_process GO:0052712 inositol phosphosphingolipid phospholipase activity molecular_function GO:0052713 inositol phosphorylceramide phospholipase activity molecular_function GO:0052714 mannosyl-inositol phosphorylceramide phospholipase activity molecular_function GO:0052715 mannosyl-diinositol phosphorylceramide phospholipase activity molecular_function GO:0052716 hydroquinone:oxygen oxidoreductase activity molecular_function GO:0052717 tRNA-specific adenosine-34 deaminase activity molecular_function GO:0052718 tRNA-specific adenosine-34 deaminase complex cellular_component GO:0072689 MCM complex assembly biological_process GO:0080181 lateral root branching biological_process GO:0080182 histone H3-K4 trimethylation biological_process GO:0080183 response to photooxidative stress biological_process GO:0080184 response to phenylpropanoid biological_process GO:0080185 effector dependent induction by symbiont of host immune response biological_process GO:0090411 brassinosteroid binding molecular_function GO:0097151 positive regulation of inhibitory postsynaptic membrane potential biological_process GO:2000986 negative regulation of behavioral fear response biological_process GO:2000987 positive regulation of behavioral fear response biological_process GO:2000988 regulation of hemicellulose catabolic process biological_process GO:2000989 negative regulation of hemicellulose catabolic process biological_process GO:2000990 positive regulation of hemicellulose catabolic process biological_process GO:2000991 regulation of galactomannan catabolic process biological_process GO:2000992 negative regulation of galactomannan catabolic process biological_process GO:2000993 positive regulation of galactomannan catabolic process biological_process GO:2000994 regulation of mannan catabolic process biological_process GO:2000995 negative regulation of mannan catabolic process biological_process GO:2000996 positive regulation of mannan catabolic process biological_process GO:2000997 regulation of cellulose catabolic process biological_process GO:2000998 negative regulation of cellulose catabolic process biological_process GO:2000999 positive regulation of cellulose catabolic process biological_process GO:2001000 regulation of xylan catabolic process biological_process GO:2001001 negative regulation of xylan catabolic process biological_process GO:2001002 positive regulation of xylan catabolic process biological_process GO:2001003 regulation of pectin catabolic process biological_process GO:2001004 negative regulation of pectin catabolic process biological_process GO:2001005 positive regulation of pectin catabolic process biological_process GO:2001006 regulation of cellulose biosynthetic process biological_process GO:2001007 negative regulation of cellulose biosynthetic process biological_process GO:2001008 positive regulation of cellulose biosynthetic process biological_process GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process biological_process GO:2001010 negative regulation of plant-type cell wall cellulose biosynthetic process biological_process GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process biological_process GO:2001012 mesenchymal cell differentiation involved in renal system development biological_process GO:2001014 regulation of skeletal muscle cell differentiation biological_process GO:2001015 negative regulation of skeletal muscle cell differentiation biological_process GO:2001016 positive regulation of skeletal muscle cell differentiation biological_process OBSOLETIONS =========== GO:0018853, perillyl-CoA synthetase activity (molecular_function) This term was made obsolete because it represents two reactions. Consider: GO:0052685, GO:0052686 TERM MERGES =========== GO:0006345, loss of chromatin silencing was merged into GO:0031936, negative regulation of chromatin silencing GO:0051768, nitric-oxide synthase 2 biosynthetic process was merged into GO:0051767, nitric-oxide synthase biosynthetic process GO:0051772, regulation of nitric-oxide synthase 2 biosynthetic process was merged into GO:0051769, regulation of nitric-oxide synthase biosynthetic process GO:0051773, positive regulation of nitric-oxide synthase 2 biosynthetic process was merged into GO:0051770, positive regulation of nitric-oxide synthase biosynthetic process GO:0051774, negative regulation of nitric-oxide synthase 2 biosynthetic process was merged into GO:0051771, negative regulation of nitric-oxide synthase biosynthetic process TERM CHANGES ============ GO:0000050 : urea cycle - relationship: has_part GO:0004086 GO:0000054 : ribosomal subunit export from nucleus + subset: goslim_yeast GO:0000127 : transcription factor TFIIIC complex - def: A transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIC contains three conserved subunits that associate with the proximal Pol III promoter element, and additional subunits that associate with sequence elements downstream of the promoter and are more diverged among species. + def: A heterotrimeric transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIC contains three conserved subunits that associate with the proximal Pol III promoter element, and additional subunits that associate with sequence elements downstream of the promoter and are more diverged among species. It also functions as a boundary element to partition genome content into distinct domains outside Pol III promoter regions. GO:0000278 : mitotic cell cycle + subset: goslim_yeast GO:0000902 : cell morphogenesis + subset: goslim_yeast GO:0000988 : protein binding transcription factor activity + subset: goslim_yeast GO:0001071 : nucleic acid binding transcription factor activity + subset: goslim_yeast GO:0001308 : negative regulation of chromatin silencing involved in replicative cell aging - name: loss of chromatin silencing involved in replicative cell aging + name: negative regulation of chromatin silencing involved in replicative cell aging + synonym: "loss of chromatin silencing involved in replicative cell aging" EXACT [] - is_a: GO:0006345 + is_a: GO:0031936 - intersection_of: GO:0006345 + intersection_of: negatively_regulates GO:0006342 + intersection_of: GO:0065007 GO:0001403 : invasive growth in response to glucose limitation + subset: goslim_yeast GO:0002181 : cytoplasmic translation + subset: goslim_yeast GO:0003729 : mRNA binding + subset: goslim_yeast GO:0003735 : structural constituent of ribosome + subset: goslim_yeast GO:0003774 : motor activity - subset: goslim_yeast GO:0003918 : DNA topoisomerase (ATP-hydrolyzing) activity + is_a: GO:0008094 GO:0003924 : GTPase activity + subset: goslim_yeast GO:0003990 : acetylcholinesterase activity - is_a: GO:0052689 + is_a: GO:0004104 GO:0004518 : nuclease activity + subset: goslim_yeast GO:0004672 : protein kinase activity - subset: goslim_yeast GO:0004721 : phosphoprotein phosphatase activity - subset: goslim_yeast GO:0005215 : transporter activity - subset: goslim_yeast GO:0005515 : protein binding - subset: goslim_yeast GO:0005643 : nuclear pore + synonym: "nucleopore" EXACT [GOC:al, PMID:7603572] GO:0005975 : carbohydrate metabolic process + subset: goslim_yeast GO:0006259 : DNA metabolic process - subset: goslim_yeast GO:0006260 : DNA replication + subset: goslim_yeast GO:0006281 : DNA repair + subset: goslim_yeast GO:0006310 : DNA recombination + subset: goslim_yeast GO:0006325 : chromatin organization + subset: goslim_yeast GO:0006352 : transcription initiation, DNA-dependent + subset: goslim_yeast GO:0006353 : transcription termination, DNA-dependent + subset: goslim_yeast GO:0006354 : transcription elongation, DNA-dependent + subset: goslim_yeast GO:0006360 : transcription from RNA polymerase I promoter + subset: goslim_yeast GO:0006364 : rRNA processing + subset: goslim_yeast GO:0006366 : transcription from RNA polymerase II promoter + subset: goslim_yeast GO:0006383 : transcription from RNA polymerase III promoter + subset: goslim_yeast GO:0006397 : mRNA processing + subset: goslim_yeast GO:0006401 : RNA catabolic process + subset: goslim_yeast GO:0006412 : translation - subset: goslim_yeast GO:0006413 : translational initiation + subset: goslim_yeast GO:0006414 : translational elongation + subset: goslim_yeast GO:0006417 : regulation of translation + subset: goslim_yeast GO:0006418 : tRNA aminoacylation for protein translation + subset: goslim_yeast GO:0006464 : protein modification process - subset: goslim_yeast GO:0006468 : protein phosphorylation + subset: goslim_yeast GO:0006470 : protein dephosphorylation + subset: goslim_yeast GO:0006486 : protein glycosylation + subset: goslim_yeast GO:0006497 : protein lipidation + subset: goslim_yeast GO:0006520 : cellular amino acid metabolic process + subset: goslim_yeast GO:0006605 : protein targeting + subset: goslim_yeast GO:0006629 : lipid metabolic process + subset: goslim_yeast GO:0006725 : cellular aromatic compound metabolic process - subset: goslim_yeast GO:0006810 : transport - subset: goslim_yeast GO:0006811 : ion transport + subset: goslim_yeast GO:0006865 : amino acid transport + subset: goslim_yeast GO:0006869 : lipid transport + subset: goslim_yeast GO:0006873 : cellular ion homeostasis + subset: goslim_yeast GO:0006887 : exocytosis + subset: goslim_yeast GO:0006897 : endocytosis + subset: goslim_yeast GO:0006907 : pinocytosis - def: An endocytosis process that results in the uptake of liquid material by cells from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, formed by invagination of the plasma membrane. These vesicles then move into the cell and pass their contents to endosomes. + def: An endocytosis process that results in the uptake of liquid material by cells from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, called pinosomes, formed by invagination of the plasma membrane. - synonym: "clathrin-independent pinocytosis" NARROW [] + synonym: "clathrin-independent pinocytosis" BROAD [] GO:0006950 : response to stress - subset: goslim_yeast GO:0006970 : response to osmotic stress + subset: goslim_yeast GO:0006974 : response to DNA damage stimulus + subset: goslim_yeast GO:0006979 : response to oxidative stress + subset: goslim_yeast GO:0007018 : microtubule-based movement + is_a: GO:0006928 GO:0007049 : cell cycle - subset: goslim_yeast GO:0007126 : meiosis - subset: goslim_yeast GO:0007165 : signal transduction - subset: goslim_yeast GO:0008033 : tRNA processing + subset: goslim_yeast GO:0008090 : retrograde axon cargo transport - synonym: "retrograde axonal transport" RELATED [] + synonym: "retrograde axonal transport" EXACT [] GO:0008092 : cytoskeletal protein binding + subset: goslim_yeast GO:0008134 : transcription factor binding + subset: goslim_yeast GO:0008135 : translation factor activity, nucleic acid binding + subset: goslim_yeast GO:0008168 : methyltransferase activity + subset: goslim_yeast GO:0008213 : protein alkylation + subset: goslim_yeast GO:0008380 : RNA splicing + subset: goslim_yeast GO:0008565 : protein transporter activity + subset: goslim_yeast GO:0008643 : carbohydrate transport + subset: goslim_yeast GO:0008657 : DNA topoisomerase (ATP-hydrolyzing) inhibitor activity - is_a: GO:0004857 + is_a: GO:0072586 + is_a: GO:0042030 + relationship: negatively_regulates GO:0003918 + relationship: part_of GO:2000372 GO:0008886 : glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity - name: glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity + name: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity GO:0009307 : DNA restriction-modification system - def: Any process that protects an organism from invading foreign DNA by methylation of self DNA at specific sequences and nucleolytic cleavage of unmethylated foreign DNA. + def: A defense process found in many bacteria and archaea that protects the organism from invading foreign DNA by cleaving it with a restriction endonuclease. The organism's own DNA is protected by methylation of a specific nucleotide, which occurs immediately following replication, in the same target site as the restriction enzyme. + is_a: GO:0044355 GO:0009311 : oligosaccharide metabolic process + subset: goslim_yeast GO:0009408 : response to heat + subset: goslim_yeast GO:0009451 : RNA modification + subset: goslim_yeast GO:0010324 : membrane invagination + subset: goslim_yeast GO:0010830 : regulation of myotube differentiation + is_a: GO:2001014 GO:0010831 : positive regulation of myotube differentiation - is_a: GO:0051155 + is_a: GO:2001016 GO:0010832 : negative regulation of myotube differentiation - is_a: GO:0051154 + is_a: GO:2001015 GO:0015931 : nucleobase, nucleoside, nucleotide and nucleic acid transport + subset: goslim_yeast GO:0016044 : cellular membrane organization - subset: goslim_yeast GO:0016070 : RNA metabolic process - subset: goslim_yeast GO:0016192 : vesicle-mediated transport - subset: goslim_yeast GO:0016197 : endosome transport + subset: goslim_yeast GO:0016301 : kinase activity + subset: goslim_yeast GO:0016570 : histone modification + subset: goslim_yeast GO:0016740 : transferase activity - subset: goslim_yeast GO:0016746 : transferase activity, transferring acyl groups + subset: goslim_yeast GO:0016757 : transferase activity, transferring glycosyl groups + subset: goslim_yeast GO:0016765 : transferase activity, transferring alkyl or aryl (other than methyl) groups + subset: goslim_yeast GO:0016787 : hydrolase activity - subset: goslim_yeast GO:0016791 : phosphatase activity + subset: goslim_yeast GO:0016798 : hydrolase activity, acting on glycosyl bonds + subset: goslim_yeast GO:0016810 : hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds + subset: goslim_yeast GO:0016887 : ATPase activity + subset: goslim_yeast GO:0018193 : peptidyl-amino acid modification + subset: goslim_yeast GO:0018853 : perillyl-CoA synthetase activity - def: Catalysis of the reaction: perillic acid + CoA-SH + ATP = H2O + ADP/AMP + mono/diphosphate + perillyl-CoA. + def: OBSOLETE. Catalysis of the reaction: perillic acid + CoA-SH + ATP = H2O + ADP/AMP + mono/diphosphate + perillyl-CoA. + comment: This term was made obsolete because it represents two reactions. - is_a: GO:0016405 - is_a: GO:0016878 + is_obsolete: true + consider: GO:0052685 + consider: GO:0052686 GO:0019725 : cellular homeostasis - subset: goslim_yeast GO:0019843 : rRNA binding + subset: goslim_yeast GO:0019899 : enzyme binding + subset: goslim_yeast GO:0022857 : transmembrane transporter activity + subset: goslim_yeast GO:0023052 : signaling + subset: goslim_yeast GO:0030048 : actin filament-based movement + is_a: GO:0006928 GO:0030144 : alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity - name: alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity + name: alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity + synonym: "alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity" EXACT [] GO:0030435 : sporulation resulting in formation of a cellular spore - subset: goslim_yeast GO:0030528 : transcription regulator activity - subset: goslim_yeast GO:0030555 : RNA modification guide activity + subset: goslim_yeast GO:0030674 : protein binding, bridging + subset: goslim_yeast GO:0031399 : regulation of protein modification process + subset: goslim_yeast GO:0031505 : fungal-type cell wall organization - subset: goslim_yeast GO:0031936 : negative regulation of chromatin silencing + alt_id: GO:0006345 + synonym: "loss of chromatin silencing" EXACT [] GO:0032182 : small conjugating protein binding + subset: goslim_yeast GO:0032200 : telomere organization + subset: goslim_yeast GO:0032542 : sulfiredoxin activity + is_a: GO:0016209 GO:0032543 : mitochondrial translation + subset: goslim_yeast GO:0032989 : cellular component morphogenesis - subset: goslim_yeast GO:0033043 : regulation of organelle organization + subset: goslim_yeast GO:0042254 : ribosome biogenesis - subset: goslim_yeast GO:0042255 : ribosome assembly + subset: goslim_yeast GO:0042273 : ribosomal large subunit biogenesis + subset: goslim_yeast GO:0042274 : ribosomal small subunit biogenesis + subset: goslim_yeast GO:0042393 : histone binding + subset: goslim_yeast GO:0042594 : response to starvation + subset: goslim_yeast GO:0043144 : snoRNA processing + subset: goslim_yeast GO:0043167 : ion binding + subset: goslim_yeast GO:0043543 : protein acylation + subset: goslim_yeast GO:0043934 : sporulation + subset: goslim_yeast GO:0044005 : induction by symbiont in host of tumor, nodule, or growth - def: The process in which an organism causes the formation of an abnormal mass of cells in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. + def: The process in which an organism causes the formation of a mass of cells in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. GO:0044006 : induction by symbiont in host of tumor, nodule, or growth containing transformed cells - def: The process in which an organism causes the formation in its host organism of an abnormal growth whose cells have been transformed and continue to exist in the absence of the first organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. + def: The process in which an organism causes the formation in its host organism of a growth whose cells have been transformed and continue to exist in the absence of the first organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. GO:0044255 : cellular lipid metabolic process - subset: goslim_yeast GO:0044257 : cellular protein catabolic process - subset: goslim_yeast GO:0044262 : cellular carbohydrate metabolic process - subset: goslim_yeast GO:0045182 : translation regulator activity - subset: goslim_yeast GO:0046483 : heterocycle metabolic process - subset: goslim_yeast GO:0047253 : alpha-1,6-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity - name: alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase activity + name: alpha-1,6-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity + synonym: "alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase activity" EXACT [] GO:0048193 : Golgi vesicle transport + subset: goslim_yeast GO:0048284 : organelle fusion + subset: goslim_yeast GO:0048285 : organelle fission + subset: goslim_yeast GO:0048308 : organelle inheritance + subset: goslim_yeast GO:0051037 : regulation of transcription during meiosis + relationship: part_of GO:0007126 GO:0051049 : regulation of transport + subset: goslim_yeast GO:0051052 : regulation of DNA metabolic process + subset: goslim_yeast GO:0051082 : unfolded protein binding + subset: goslim_yeast GO:0051169 : nuclear transport + subset: goslim_yeast GO:0051276 : chromosome organization - subset: goslim_yeast GO:0051321 : meiotic cell cycle + subset: goslim_yeast GO:0051603 : proteolysis involved in cellular protein catabolic process + subset: goslim_yeast GO:0051604 : protein maturation + subset: goslim_yeast GO:0051726 : regulation of cell cycle + subset: goslim_yeast GO:0051767 : nitric-oxide synthase biosynthetic process + alt_id: GO:0051768 - def: The chemical reactions and pathways resulting in the formation of nitric-oxide synthase, an enzyme which catalyzes the reaction L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+. + def: The chemical reactions and pathways resulting in the formation of a nitric-oxide synthase, an enzyme which catalyzes the reaction L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+. + synonym: "NOS3 biosynthesis" NARROW [GOC:bf] + synonym: "nitric-oxide synthase-3 biosynthetic process" NARROW [GOC:bf] + synonym: "NOS2 synthase biosynthesis" NARROW [] + synonym: "nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "NOS1 biosynthesis" NARROW [GOC:bf] + synonym: "endothelial nitric-oxide synthase biosynthetic process" NARROW [GOC:bf] + synonym: "nitric-oxide synthase (type II) biosynthetic process" NARROW [] + synonym: "inducible nitric-oxide synthase biosynthetic process" NARROW [GOC:bf] + synonym: "NOS2 biosynthesis" NARROW [GOC:bf] + synonym: "nitric-oxide synthase (type II) biosynthesis" NARROW [] + synonym: "nitric-oxide synthase (type 2) biosynthetic process" NARROW [] + synonym: "brain nitric-oxide synthase biosynthetic process" NARROW [GOC:bf] + synonym: "NOS2 synthase biosynthetic process" NARROW [] + synonym: "nitric-oxide synthase (type 2) biosynthesis" NARROW [] + synonym: "nitric-oxide synthase-2 biosynthetic process" NARROW [GOC:bf] + synonym: "nitric-oxide synthase-1 biosynthetic process" NARROW [GOC:bf] GO:0051769 : regulation of nitric-oxide synthase biosynthetic process + alt_id: GO:0051772 - def: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme nitric-oxide synthase. + def: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme. + synonym: "regulation of nitric-oxide synthase (type 2) biosynthesis" NARROW [] + synonym: "regulation of nitric-oxide synthase (type II) biosynthetic process" NARROW [] + synonym: "regulation of NOS2 synthase biosynthesis" NARROW [] + synonym: "regulation of nitric-oxide synthase (type 2) biosynthetic process" NARROW [] + synonym: "regulation of NOS2 synthase biosynthetic process" NARROW [] + synonym: "regulation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "regulation of nitric-oxide synthase (type II) biosynthesis" NARROW [] GO:0051770 : positive regulation of nitric-oxide synthase biosynthetic process + alt_id: GO:0051773 - def: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme nitric oxide synthase. + def: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric oxide synthase enzyme. + synonym: "up regulation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "positive regulation of nitric-oxide synthase (type II) biosynthesis" NARROW [] + synonym: "positive regulation of nitric-oxide synthase (type 2) biosynthetic process" NARROW [] + synonym: "positive regulation of NOS2 synthase biosynthesis" NARROW [] + synonym: "stimulation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "positive regulation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "up-regulation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "upregulation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "activation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "positive regulation of nitric-oxide synthase (type II) biosynthetic process" NARROW [] + synonym: "positive regulation of NOS2 synthase biosynthetic process" NARROW [] + synonym: "positive regulation of nitric-oxide synthase (type 2) biosynthesis" NARROW [] GO:0051771 : negative regulation of nitric-oxide synthase biosynthetic process + alt_id: GO:0051774 - def: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme nitric-oxide synthase. + def: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme. + synonym: "negative regulation of nitric-oxide synthase (type 2) biosynthesis" NARROW [] + synonym: "inhibition of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "negative regulation of nitric-oxide synthase (type 2) biosynthetic process" NARROW [] + synonym: "down-regulation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "negative regulation of NOS2 synthase biosynthesis" NARROW [] + synonym: "negative regulation of NOS2 synthase biosynthetic process" NARROW [] + synonym: "down regulation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "negative regulation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "negative regulation of nitric-oxide synthase (type II) biosynthesis" NARROW [] + synonym: "downregulation of nitric-oxide synthase 2 biosynthetic process" NARROW [] + synonym: "negative regulation of nitric-oxide synthase (type II) biosynthetic process" NARROW [] GO:0051819 : induction of tumor, nodule, or growth in other organism involved in symbiotic interaction - def: The process in which an organism causes the formation of an abnormal mass of cells in a second organism, where the two organisms are in a symbiotic interaction. + def: The process in which an organism causes the formation of a mass of cells in a second organism, where the two organisms are in a symbiotic interaction. GO:0051820 : induction of tumor, nodule, or growth containing transformed cells in other organism involved in symbiotic interaction - def: The process in which an organism causes the formation in a second organism of an abnormal growth whose cells have been transformed and continue to exist in the absence of the first organism, where the two organisms are in a symbiotic interaction. + def: The process in which an organism causes the formation in a second organism of a growth whose cells have been transformed and continue to exist in the absence of the first organism, where the two organisms are in a symbiotic interaction. GO:0052707 : N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine - name: histidine catabolic process to N-alpha,N-alpha,N-alpha-trimethyl-L-histidine + name: N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine + synonym: "hercynine biosynthesis from histidine" EXACT [] + synonym: "histidine betaine biosynthesis from histidine" EXACT [] + relationship: has_part GO:0052704 GO:0055085 : transmembrane transport + subset: goslim_yeast GO:0055086 : nucleobase, nucleoside and nucleotide metabolic process + subset: goslim_yeast GO:0060080 : regulation of inhibitory postsynaptic membrane potential - def: Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporay decrease in postsynaptic potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential. + def: Any process that modulates the establishment or extent of the inhibitory postsynaptic potential (IPSP) which is a temporary decrease in postsynaptic membrane potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential. GO:0061025 : membrane fusion + subset: goslim_yeast GO:0070647 : protein modification by small protein conjugation or removal + subset: goslim_yeast GO:0070925 : organelle assembly + subset: goslim_yeast GO:0071554 : cell wall organization or biogenesis + subset: goslim_yeast GO:0072161 : mesenchymal cell differentiation involved in kidney development - is_a: GO:0048762 + is_a: GO:2001012 GO:0072583 : clathrin-mediated endocytosis - is_a: GO:0006897 + is_a: GO:0006898 GO:0072584 : caveolin-mediated endocytosis - is_a: GO:0006897 + is_a: GO:0006898 GO:0072586 : DNA topoisomerase (ATP-hydrolyzing) regulator activity - is_a: GO:0030234 + is_a: GO:0060590 GO:0072587 : DNA topoisomerase (ATP-hydrolyzing) activator activity - is_a: GO:0008047 + is_a: GO:0001671 GO:0080066 : 3-methylthiopropyl-desulfoglucosinolate sulfotransferase activity + xref: MetaCyc:RXN-2209 GO:0080067 : 4-methylthiobutyl-desulfoglucosinolate sulfotransferase activity + xref: MetaCyc:RXNQT-4329 GO:0080068 : 5-methylthiopentyl-desulfoglucosinolate sulfotransferase activity + xref: MetaCyc:RXNQT-4330 GO:0080069 : 7-methylthioheptyl-desulfoglucosinolate sulfotransferase activity + xref: MetaCyc:RXNQT-4332 GO:0080070 : 8-methylthiooctyl-desulfoglucosinolate sulfotransferase activity + xref: MetaCyc:RXNQT-4333 GO:0080071 : indol-3-yl-methyl-desulfoglucosinolate sulfotransferase activity + xref: MetaCyc:RXN-1443 GO:0090404 : pollen tube tip GO:0090406 : pollen tube GO:2000371 : regulation of DNA topoisomerase (ATP-hydrolyzing) activity + is_a: GO:0043462 GO:2000372 : negative regulation of DNA topoisomerase (ATP-hydrolyzing) activity - is_a: GO:0043086 + is_a: GO:0032780 GO:2000373 : positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity + is_a: GO:0032781 GO:2000898 : regulation of glucomannan catabolic process - is_a: GO:2000924 - is_a: GO:0043471 - is_a: GO:0010981 + is_a: GO:2000994 GO:2000907 : negative regulation of glucomannan catabolic process - is_a: GO:2000925 - is_a: GO:0031330 - is_a: GO:0010677 + is_a: GO:2000995 GO:2000908 : positive regulation of glucomannan catabolic process - is_a: GO:0031331 - is_a: GO:0010676 - is_a: GO:2000926 + is_a: GO:2000996 GO:2000912 : regulation of galactoglucomannan catabolic process - is_a: GO:2000924 - is_a: GO:0043471 - is_a: GO:0010981 + is_a: GO:2000994 GO:2000913 : negative regulation of galactoglucomannan catabolic process - is_a: GO:2000925 - is_a: GO:0031330 - is_a: GO:0010677 + is_a: GO:2000995 GO:2000914 : positive regulation of galactoglucomannan catabolic process - is_a: GO:0031331 - is_a: GO:0010676 - is_a: GO:2000926 + is_a: GO:2000996 GO:2000915 : regulation of glucuronoxylan catabolic process - is_a: GO:2000924 - is_a: GO:0010981 + is_a: GO:2001000 GO:2000916 : negative regulation of glucuronoxylan catabolic process - is_a: GO:2000925 + is_a: GO:2001001 GO:2000917 : positive regulation of glucuronoxylan catabolic process - is_a: GO:2000926 + is_a: GO:2001002 GO:2000918 : regulation of glucuronoarabinoxylan catabolic process - is_a: GO:2000924 - is_a: GO:0010981 + is_a: GO:2001000 GO:2000919 : negative regulation of glucuronoarabinoxylan catabolic process - is_a: GO:2000925 + is_a: GO:2001001 GO:2000920 : positive regulation of glucuronoarabinoxylan catabolic process - is_a: GO:2000926 + is_a: GO:2001002 GO:2000921 : regulation of arabinoxylan catabolic process - is_a: GO:2000924 - is_a: GO:0010981 + is_a: GO:2001000 GO:2000922 : negative regulation of arabinoxylan catabolic process - is_a: GO:2000925 + is_a: GO:2001001 GO:2000923 : positive regulation of arabinoxylan catabolic process - is_a: GO:2000926 + is_a: GO:2001002 GO:2000930 : regulation of cellobiose metabolic process - synonym: "regulation of cellose metabolism" EXACT [GOC:obol] + synonym: "regulation of cellobiose metabolism" EXACT [GOC:obol] GO:2000931 : negative regulation of cellobiose metabolic process - synonym: "negative regulation of cellose metabolism" EXACT [GOC:obol] + synonym: "negative regulation of cellobiose metabolism" EXACT [GOC:obol] GO:2000932 : positive regulation of cellobiose metabolic process - synonym: "positive regulation of cellose metabolism" EXACT [GOC:obol] + synonym: "positive regulation of cellobiose metabolism" EXACT [GOC:obol] FILE STATS ========== Term counts for the old and new files Ontology Old file New file Change molecular function 9037 9043 +6 (9037 defined) (9043 defined) cellular component 2887 2892 +5 (2887 defined) (2892 defined) biological process 21274 21317 +43 (21274 defined) (21317 defined) Obsolete 1563 1564 +1 (4.5% of total) (4.5% of total) (+0.1%) Totals 33198 33252 +55 (+0.2%) 33198 (100.0%) defined 33252 (100.0%) defined 34761 inc. obs 34816 inc. obs