GO Monthly Release Notes for August 2007
========================
Generated on Sun Sep 23 15:49:48 2007
Files used:
gene_ontology.obo
OLD: version 4.288, 27:07:2007 19:30
NEW: version 4.309, 30:08:2007 19:30
goslim_generic
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in biological_process ontology (77 new terms)
GO:0000469 GO:0006139 SGD D cleavages during rRNA processing
GO:0006996
GO:0000477 GO:0006139 SGD D generation of mature 5'-end of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006996
GO:0010438 GO:0006950 TAIR D 1711557 cellular response to sulfur starvation
GO:0007154
GO:0009605
GO:0010439 GO:0005975 TAIR D regulation of glucosinolate biosynthetic process
GO:0009058
GO:0019748
GO:0050789
GO:0010440 GO:0007275 TAIR D stomatal lineage progression
GO:0010441 GO:0007275 TAIR D guard cell development
GO:0009653
GO:0030154
GO:0010442 GO:0007275 TAIR D guard cell morphogenesis
GO:0009653
GO:0016043
GO:0030154
GO:0010443 GO:0007049 TAIR D meristemoid mother cell division
GO:0007275
GO:0010444 GO:0007275 TAIR D guard mother cell differentiation
GO:0030154
GO:0010446 GO:0009628 TAIR D response to alkalinity
GO:0010447 GO:0009628 TAIR D response to acidity
GO:0032509 GO:0006810 MAH D endosome transport via multivesicular body sorting pathway
GO:0016043
GO:0032510 GO:0006810 MAH D endosome to lysosome transport via multivesicular body sorting pathway
GO:0016043
GO:0032511 GO:0006810 MAH D late endosome to vacuole transport via multivesicular body sorting pathway
GO:0016043
GO:0032512 GO:0008150 MAH D regulation of protein phosphatase type 2B activity
GO:0032513 GO:0008150 MAH D negative regulation of protein phosphatase type 2B activity
GO:0032514 GO:0008150 MAH D positive regulation of protein phosphatase type 2B activity
GO:0032515 GO:0008150 MAH D negative regulation of phosphoprotein phosphatase activity
GO:0032516 GO:0008150 MAH D positive regulation of phosphoprotein phosphatase activity
GO:0032524 GO:0006810 MAH D nutrient export
GO:0032525 GO:0009790 MAH D somite rostral/caudal axis specification
GO:0032526 GO:0007154 MAH D response to retinoic acid
GO:0009605
GO:0032527 GO:0015031 MAH D protein exit from endoplasmic reticulum
GO:0016043
GO:0032528 GO:0009653 MAH D microvillus organization and biogenesis
GO:0016043
GO:0032529 GO:0009653 MAH D follicle cell microvillus organization and biogenesis
GO:0016043
GO:0032530 GO:0009653 MAH D regulation of microvillus organization and biogenesis
GO:0016043
GO:0050789
GO:0032531 GO:0009653 MAH D regulation of follicle cell microvillus organization and biogenesis
GO:0016043
GO:0050789
GO:0032532 GO:0009653 MAH D regulation of microvillus length
GO:0016043
GO:0050789
GO:0032533 GO:0009653 MAH D regulation of follicle cell microvillus length
GO:0016043
GO:0050789
GO:0032534 GO:0009653 MAH D regulation of microvillus biogenesis
GO:0016043
GO:0050789
GO:0032535 GO:0008150 MAH D regulation of cellular component size
GO:0032536 GO:0008150 MAH D regulation of cell projection size
GO:0032537 GO:0007610 MAH D 1711143 host-seeking behavior
GO:0032538 GO:0000003 MAH D 1711143 regulation of host-seeking behavior
GO:0007610
GO:0050789
GO:0032539 GO:0000003 MAH D 1711143 negative regulation of host-seeking behavior
GO:0007610
GO:0050789
GO:0032540 GO:0000003 MAH D 1711143 positive regulation of host-seeking behavior
GO:0007610
GO:0050789
GO:0032543 GO:0006412 MAH D 1778552 mitochondrial translation
GO:0007005
GO:0032544 GO:0006412 MAH D 1778552 plastid translation
GO:0006996
GO:0032568 GO:0006350 MAH D 1590000 general transcription from RNA polymerase II promoter
GO:0032569 GO:0006350 MAH D 1590000 specific transcription from RNA polymerase II promoter
GO:0032570 GO:0009719 MAH D response to progesterone stimulus
GO:0032571 GO:0007154 MAH D response to vitamin K
GO:0009605
GO:0032572 GO:0007154 MAH D response to menaquinone
GO:0009605
GO:0032573 GO:0007154 MAH D response to phylloquinone
GO:0009605
GO:0033561 GO:0008150 MAH D regulation of water loss via skin
GO:0033562 GO:0006139 MAH D small RNA-mediated cotranscriptional gene silencing
GO:0033563 GO:0007275 MAH D dorsal/ventral axon guidance
GO:0009653
GO:0016043
GO:0030154
GO:0033564 GO:0007275 MAH D anterior/posterior axon guidance
GO:0009653
GO:0016043
GO:0030154
GO:0033566 GO:0008150 MAH D gamma-tubulin complex localization
GO:0033567 GO:0006259 MAH D DNA replication, Okazaki fragment processing
GO:0033571 GO:0006811 MAH D lactoferrin transport
GO:0015031
GO:0033572 GO:0006811 MAH D transferrin transport
GO:0015031
GO:0033574 GO:0009719 MAH D response to testosterone stimulus
GO:0033575 GO:0006464 MAH D protein amino acid glycosylation at cell surface
GO:0009058
GO:0033576 GO:0006464 MAH D protein amino acid glycosylation in cytosol
GO:0009058
GO:0033577 GO:0006464 MAH D protein amino acid glycosylation in endoplasmic reticulum
GO:0009058
GO:0033578 GO:0006464 MAH D protein amino acid glycosylation in Golgi
GO:0009058
GO:0033579 GO:0006464 MAH D protein amino acid galactosylation in endoplasmic reticulum
GO:0009058
GO:0033580 GO:0006464 MAH D protein amino acid galactosylation at cell surface
GO:0009058
GO:0033581 GO:0006464 MAH D protein amino acid galactosylation in Golgi
GO:0009058
GO:0033582 GO:0006464 MAH D protein amino acid galactosylation in cytosol
GO:0009058
GO:0033584 GO:0006519 MAH D tyrosine biosynthetic process from chorismate via L-arogenate
GO:0009058
GO:0033585 GO:0006519 MAH D L-phenylalanine biosynthetic process from chorismate via phenylpyruvate
GO:0009058
GO:0033586 GO:0006519 MAH D L-phenylalanine biosynthetic process from chorismate via L-arogenate
GO:0009058
GO:0033587 GO:0008152 MAH D shikimate biosynthetic process
GO:0033590 GO:0007154 MAH D response to cobalamin
GO:0009605
GO:0033591 GO:0007154 MAH D response to L-ascorbic acid
GO:0009605
GO:0033594 GO:0008150 MAH D response to hydroxyisoflavone
GO:0033595 GO:0008150 MAH D response to genistein
GO:0033598 GO:0008283 MAH D mammary gland epithelial cell proliferation
GO:0033599 GO:0008283 MAH D regulation of mammary gland epithelial cell proliferation
GO:0050789
GO:0033600 GO:0008283 MAH D negative regulation of mammary gland epithelial cell proliferation
GO:0050789
GO:0033601 GO:0008283 MAH D positive regulation of mammary gland epithelial cell proliferation
GO:0050789
GO:0033602 GO:0006810 MAH D negative regulation of dopamine secretion
GO:0007267
GO:0016043
GO:0050789
GO:0033603 GO:0006810 MAH D positive regulation of dopamine secretion
GO:0007267
GO:0016043
GO:0050789
GO:0033604 GO:0006810 MAH D negative regulation of catecholamine secretion
GO:0007267
GO:0016043
GO:0050789
GO:0033605 GO:0006810 MAH D positive regulation of catecholamine secretion
GO:0007267
GO:0016043
GO:0050789
Term name changes in biological_process ontology
GO:0000447: endonucleolytic cleavage between SSU-rRNA and 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) --> endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000448: cleavage between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) --> cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0001542: ovulation (sensu Mammalia) --> ovulation from ovarian follicle
GO:0001744: optic placode formation (sensu Endopterygota) --> optic lobe placode formation
GO:0001748: optic placode development (sensu Endopterygota) --> optic lobe placode development
GO:0007297: follicle cell migration (sensu Insecta) --> ovarian follicle cell migration
GO:0007298: border follicle cell migration (sensu Insecta) --> border follicle cell migration
GO:0007299: follicle cell adhesion (sensu Insecta) --> ovarian follicle cell adhesion
GO:0008069: dorsal/ventral axis determination, follicular epithelium (sensu Insecta) --> dorsal/ventral axis determination, ovarian follicular epithelium
GO:0008070: maternal determination of dorsal/ventral axis, follicular epithelium, germ-line encoded --> maternal determination of dorsal/ventral axis, ovarian follicular epithelium, germ-line encoded
GO:0008071: maternal determination of dorsal/ventral axis, follicular epithelium, soma encoded (sensu Insecta) --> maternal determination of dorsal/ventral axis, ovarian follicular epithelium, soma encoded
GO:0021512: spinal cord anterior-posterior patterning --> spinal cord anterior/posterior patterning
GO:0021513: spinal cord dorsal-ventral patterning --> spinal cord dorsal/ventral patterning
GO:0021797: forebrain anterior-posterior pattern formation --> forebrain anterior/posterior pattern formation
GO:0021798: forebrain dorsal-ventral pattern formation --> forebrain dorsal/ventral pattern formation
GO:0022002: wnt receptor signaling involved in negative regulation of anterior neural cell fate of the neural plate --> Wnt receptor signaling involved in negative regulation of anterior neural cell fate of the neural plate
GO:0030707: ovarian follicle cell development (sensu Insecta) --> ovarian follicle cell development
GO:0030713: stalk formation (sensu Insecta) --> ovarian follicle cell stalk formation
GO:0042780: tRNA 3'-processing --> tRNA 3'-end processing
GO:0060113: inner ear receptor cell differenation --> inner ear receptor cell differentiation
New term merges in biological_process ontology
GO:0000490 has been merged into GO:0000448, cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0009096 has been merged into GO:0000162, tryptophan biosynthetic process
GO:0009993 has been merged into GO:0048477, oogenesis
GO:0016089 has been merged into GO:0009073, aromatic amino acid family biosynthetic process
GO:0019274 has been merged into GO:0009094, L-phenylalanine biosynthetic process
GO:0019275 has been merged into GO:0009094, L-phenylalanine biosynthetic process
GO:0019291 has been merged into GO:0019293, tyrosine biosynthetic process, by oxidation of phenylalanine
GO:0043339 has been merged into GO:0045196, establishment and/or maintenance of neuroblast polarity
GO:0043340 has been merged into GO:0045200, establishment of neuroblast polarity
GO:0043341 has been merged into GO:0045201, maintenance of neuroblast polarity
GO:0043342 has been merged into GO:0045196, establishment and/or maintenance of neuroblast polarity
GO:0043343 has been merged into GO:0045200, establishment of neuroblast polarity
GO:0043344 has been merged into GO:0045201, maintenance of neuroblast polarity
GO:0043349 has been merged into GO:0007405, neuroblast proliferation
GO:0043350 has been merged into GO:0007405, neuroblast proliferation
GO:0043351 has been merged into GO:0007407, neuroblast activation
GO:0043352 has been merged into GO:0007407, neuroblast activation
GO:0043359 has been merged into GO:0008347, glial cell migration
GO:0043360 has been merged into GO:0010001, glial cell differentiation
GO:0043361 has been merged into GO:0007403, glial cell fate determination
Term movements in biological_process ontology:
Terms movements under GO Slim term 'DNA metabolic process ; GO:0006259'
+ GO:0000723, telomere maintenance
+ GO:0007004, telomere maintenance via telomerase
+ GO:0016233, telomere capping
+ GO:0031627, telomeric loop formation
+ GO:0031848, protection from non-homologous end joining at telomere
+ GO:0032200, telomere organization and biogenesis
+ GO:0032202, telomere assembly
+ GO:0032203, telomere formation via telomerase
+ GO:0032204, regulation of telomere maintenance
+ GO:0032205, negative regulation of telomere maintenance
+ GO:0032206, positive regulation of telomere maintenance
+ GO:0032210, regulation of telomere maintenance via telomerase
+ GO:0032211, negative regulation of telomere maintenance via telomerase
+ GO:0032212, positive regulation of telomere maintenance via telomerase
+ GO:0032213, regulation of telomere maintenance via semi-conservative replication
+ GO:0032214, negative regulation of telomere maintenance via semi-conservative replication
+ GO:0032215, positive regulation of telomere maintenance via semi-conservative replication
+ GO:0043247, telomere maintenance in response to DNA damage
Terms movements under GO Slim term 'amino acid and derivative metabolic process ; GO:0006519'
- GO:0009239, enterobactin biosynthetic process
- GO:0009423, chorismate biosynthetic process
- GO:0009712, catechol metabolic process
- GO:0009713, catechol biosynthetic process
- GO:0018918, gallate metabolic process
- GO:0019289, rhizobactin 1021 biosynthetic process
- GO:0019328, anaerobic gallate catabolic process
- GO:0019396, gallate catabolic process
- GO:0019397, gallate catabolic process via 2-pyrone-4,6-dicarboxylate
- GO:0019398, gallate catabolic process via 4-carboxy-2-hydroxhexa-2,3-dienedioate
- GO:0019489, methylgallate metabolic process
- GO:0019537, vibriobactin biosynthetic process
- GO:0019540, siderophore biosynthetic process from catechol
- GO:0019598, (R)-mandelate catabolic process to catechol
- GO:0019604, toluene oxidation to catechol
- GO:0019614, catechol catabolic process
- GO:0019615, catechol catabolic process, ortho-cleavage
- GO:0019616, catechol catabolic process, meta-cleavage
- GO:0019617, protocatechuate catabolic process, meta-cleavage
- GO:0019618, protocatechuate catabolic process, ortho-cleavage
- GO:0019619, protocatechuate catabolic process
- GO:0031189, siderophore biosynthetic process from catechol, peptide formation
- GO:0031190, siderophore biosynthetic process from catechol, peptide modification
- GO:0031191, enterobactin biosynthetic process, peptide formation
- GO:0031192, enterobactin biosynthetic process, peptide modification
- GO:0031193, rhizobactin 1021 biosynthetic process, peptide formation
- GO:0031194, rhizobactin 1021 biosynthetic process, peptide modification
- GO:0031195, vibriobactin biosynthetic process, peptide formation
- GO:0031196, vibriobactin biosynthetic process, peptide modification
- GO:0042195, aerobic gallate catabolic process
- GO:0046235, gallate biosynthetic process
- GO:0046276, methylgallate catabolic process
- GO:0046277, methylgallate biosynthetic process
- GO:0046278, protocatechuate metabolic process
- GO:0046279, protocatechuate biosynthetic process
Terms movements under GO Slim term 'organelle organization and biogenesis ; GO:0006996'
+ GO:0042793, transcription from plastid promoter
+ GO:0042794, rRNA transcription from plastid promoter
Terms movements under GO Slim term 'mitochondrion organization and biogenesis ; GO:0007005'
+ GO:0006390, transcription from mitochondrial promoter
+ GO:0006391, transcription initiation from mitochondrial promoter
+ GO:0006392, RNA elongation from mitochondrial promoter
+ GO:0006393, RNA transcription termination from mitochondrial promoter
+ GO:0042792, rRNA transcription from mitochondrial promoter
Terms movements under GO Slim term 'metabolic process ; GO:0008152'
+ GO:0009712, catechol metabolic process
+ GO:0018918, gallate metabolic process
+ GO:0019489, methylgallate metabolic process
+ GO:0019604, toluene oxidation to catechol
+ GO:0046278, protocatechuate metabolic process
- GO:0046937, phytochelatin metabolic process
Terms movements under GO Slim term 'anatomical structure morphogenesis ; GO:0009653'
- GO:0010235, guard mother cell cytokinesis
+ GO:0030713, ovarian follicle cell stalk formation
Terms movements under GO Slim term 'cellular component organization and biogenesis ; GO:0016043'
- GO:0006391, transcription initiation from mitochondrial promoter
- GO:0006393, RNA transcription termination from mitochondrial promoter
+ GO:0016998, cell wall catabolic process
+ GO:0030713, ovarian follicle cell stalk formation
+ GO:0032219, cell wall catabolic process during cytogamy
+ GO:0051672, cell wall peptidoglycan catabolic process in another organism
Terms movements under GO Slim term 'secondary metabolic process ; GO:0019748'
- GO:0006571, tyrosine biosynthetic process
- GO:0009239, enterobactin biosynthetic process
- GO:0009423, chorismate biosynthetic process
- GO:0009712, catechol metabolic process
- GO:0009713, catechol biosynthetic process
- GO:0018918, gallate metabolic process
- GO:0019289, rhizobactin 1021 biosynthetic process
- GO:0019292, tyrosine biosynthetic process from chorismate via 4-hydroxyphenylpyruvate
- GO:0019293, tyrosine biosynthetic process, by oxidation of phenylalanine
- GO:0019328, anaerobic gallate catabolic process
- GO:0019396, gallate catabolic process
- GO:0019397, gallate catabolic process via 2-pyrone-4,6-dicarboxylate
- GO:0019398, gallate catabolic process via 4-carboxy-2-hydroxhexa-2,3-dienedioate
- GO:0019444, tryptophan catabolic process to catechol
- GO:0019489, methylgallate metabolic process
- GO:0019537, vibriobactin biosynthetic process
- GO:0019540, siderophore biosynthetic process from catechol
- GO:0019598, (R)-mandelate catabolic process to catechol
- GO:0019604, toluene oxidation to catechol
- GO:0019614, catechol catabolic process
- GO:0019615, catechol catabolic process, ortho-cleavage
- GO:0019616, catechol catabolic process, meta-cleavage
- GO:0019617, protocatechuate catabolic process, meta-cleavage
- GO:0019618, protocatechuate catabolic process, ortho-cleavage
- GO:0019619, protocatechuate catabolic process
- GO:0031189, siderophore biosynthetic process from catechol, peptide formation
- GO:0031190, siderophore biosynthetic process from catechol, peptide modification
- GO:0031191, enterobactin biosynthetic process, peptide formation
- GO:0031192, enterobactin biosynthetic process, peptide modification
- GO:0031193, rhizobactin 1021 biosynthetic process, peptide formation
- GO:0031194, rhizobactin 1021 biosynthetic process, peptide modification
- GO:0031195, vibriobactin biosynthetic process, peptide formation
- GO:0031196, vibriobactin biosynthetic process, peptide modification
- GO:0042195, aerobic gallate catabolic process
- GO:0046235, gallate biosynthetic process
- GO:0046276, methylgallate catabolic process
- GO:0046277, methylgallate biosynthetic process
- GO:0046278, protocatechuate metabolic process
- GO:0046279, protocatechuate biosynthetic process
+ GO:0046937, phytochelatin metabolic process
+ GO:0046938, phytochelatin biosynthetic process
New terms in cellular_component ontology (14 new terms)
GO:0002111 GO:0005634 MGI D 1775791 BRAC2-BRAF35 complex
GO:0043234
GO:0010445 GO:0005654 TAIR D nuclear dicing body
GO:0032517 GO:0005622 MAH D SOD1-calcineurin complex
GO:0043234
GO:0032541 GO:0005783 MAH D cortical endoplasmic reticulum
GO:0032545 GO:0005634 MAH D CURI complex
GO:0043234
GO:0033565 GO:0005768 MAH D ESCRT-0 complex
GO:0043234
GO:0033573 GO:0005886 MAH D high affinity iron permease complex
GO:0043234
GO:0033583 GO:0005886 MAH D 1762858 rhabdomere membrane
GO:0033588 GO:0005622 MAH D Elongator holoenzyme complex
GO:0043234
GO:0033589 GO:0005622 MAH D Elongator core complex
GO:0043234
GO:0033593 GO:0005622 MAH D BRCA2-MAGE-D1 complex
GO:0043234
GO:0033596 GO:0005829 MAH D TSC1-TSC2 complex
GO:0043234
GO:0033597 GO:0005634 MAH D mitotic checkpoint complex
GO:0043234
GO:0033607 GO:0005622 MAH D SOD1-Bcl-2 complex
GO:0043234
Term name changes in cellular_component ontology
GO:0009380: excinuclease ABC complex --> excinuclease repair complex
Term movements in cellular_component ontology:
Terms movements under GO Slim term 'intracellular ; GO:0005622'
+ GO:0009380, excinuclease repair complex
- GO:0016027, inaD signaling complex
- GO:0016028, rhabdomere
- GO:0016029, subrhabdomeral cisterna
Terms movements under GO Slim term 'cell ; GO:0005623'
+ GO:0016028, rhabdomere
Terms movements under GO Slim term 'nucleus ; GO:0005634'
+ GO:0031510, SUMO activating enzyme complex
Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
+ GO:0009328, phenylalanine-tRNA ligase complex
Terms movements under GO Slim term 'plasma membrane ; GO:0005886'
- GO:0016028, rhabdomere
Terms movements under GO Slim term 'unlocalized protein complex ; GO:0005941'
- GO:0009328, phenylalanine-tRNA ligase complex
- GO:0009380, excinuclease repair complex
- GO:0031510, SUMO activating enzyme complex
Terms movements under GO Slim term 'cellular component organization and biogenesis ; GO:0016043'
- GO:0033551, monopolin complex
Terms movements under GO Slim term 'organelle ; GO:0043226'
- GO:0016027, inaD signaling complex
- GO:0016028, rhabdomere
- GO:0016029, subrhabdomeral cisterna
Terms movements under GO Slim term 'protein complex ; GO:0043234'
+ GO:0009328, phenylalanine-tRNA ligase complex
+ GO:0009380, excinuclease repair complex
+ GO:0031510, SUMO activating enzyme complex
New terms in molecular_function ontology (61 new terms)
GO:0010435 GO:0003824 TAIR D 1711557 3-oxo-2-(2'-pentenyl)cyclopentane-1-octanoic acid (OPC-8:0) CoA ligase activity
GO:0010436 GO:0003824 TAIR D 1711557 carotenoid dioxygenase activity
GO:0010437 GO:0003824 TAIR D 1711557 9,10 (9', 10')-carotenoid-cleaving dioxygenase activity
GO:0032518 GO:0005215 MAH D 1723526 amino acid-exporting ATPase activity
GO:0016787
GO:0032519 GO:0005215 MAH D 1723526 cysteine-exporting ATPase activity
GO:0016787
GO:0032520 GO:0005215 MAH D amino acid-importing ATPase activity
GO:0016787
GO:0032521 GO:0005215 MAH D D-methionine-exporting ATPase activity
GO:0016787
GO:0032522 GO:0005215 MAH D D-methionine-importing ATPase activity
GO:0016787
GO:0032523 GO:0005215 MAH D silicon efflux transmembrane transporter activity
GO:0032542 GO:0003824 MAH D sulfiredoxin activity
GO:0032546 GO:0005488 MAH D 1774986 deoxyribonucleoside binding
GO:0032547 GO:0005488 MAH D 1774986 purine deoxyribonucleoside binding
GO:0032548 GO:0005488 MAH D 1774986 pyrimidine deoxyribonucleoside binding
GO:0032549 GO:0005488 MAH D 1774986 ribonucleoside binding
GO:0032550 GO:0005488 MAH D 1774986 purine ribonucleoside binding
GO:0032551 GO:0005488 MAH D 1774986 pyrimidine ribonucleoside binding
GO:0032552 GO:0000166 MAH D 1774986 deoxyribonucleotide binding
GO:0032553 GO:0000166 MAH D 1774986 ribonucleotide binding
GO:0032554 GO:0000166 MAH D 1774986 purine deoxyribonucleotide binding
GO:0032555 GO:0000166 MAH D 1774986 purine ribonucleotide binding
GO:0032556 GO:0000166 MAH D 1774986 pyrimidine deoxyribonucleotide binding
GO:0032557 GO:0000166 MAH D 1774986 pyrimidine ribonucleotide binding
GO:0032558 GO:0000166 MAH D 1774986 adenyl deoxyribonucleotide binding
GO:0032559 GO:0000166 MAH D 1774986 adenyl ribonucleotide binding
GO:0032560 GO:0000166 MAH D 1774986 guanyl deoxyribonucleotide binding
GO:0032561 GO:0000166 MAH D 1774986 guanyl ribonucleotide binding
GO:0032562 GO:0000166 MAH D 1774986 dAMP binding
GO:0032563 GO:0000166 MAH D 1774986 dADP binding
GO:0032564 GO:0000166 MAH D 1774986 dATP binding
GO:0032565 GO:0000166 MAH D 1774986 dGMP binding
GO:0032566 GO:0000166 MAH D 1774986 dGDP binding
GO:0032567 GO:0000166 MAH D 1774986 dGTP binding
GO:0032574 GO:0003824 MAH D 5'-3' RNA helicase activity
GO:0032575 GO:0016787 MAH D ATP-dependent 5'-3' RNA helicase activity
GO:0033560 GO:0003824 MAH D folate reductase activity
GO:0033568 GO:0004872 MAH D lactoferrin receptor activity
GO:0033569 GO:0005215 MAH D lactoferrin transmembrane transporter activity
GO:0033570 GO:0005215 MAH D transferrin transmembrane transporter activity
GO:0033592 GO:0003723 MAH D RNA strand annealing activity
GO:0043876 GO:0003824 JL D D-threonine aldolase activity
GO:0043877 GO:0003824 JL D galactosamine-6-phosphate isomerase activity
GO:0043878 GO:0003824 JL D glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
GO:0043879 GO:0005215 JL D glycolate transmembrane transporter activity
GO:0043880 GO:0003824 JL D crotonyl-CoA reductase activity
GO:0043881 GO:0003824 JL D mesaconyl-CoA hydratase activity
GO:0043882 GO:0005215 JL D malate:sodium symporter activity
GO:0043883 GO:0003824 JL D malolactic enzyme activity
GO:0043884 GO:0016740 JL D CO-methylating acetyl-CoA synthase activity
GO:0043885 GO:0003824 JL D carbon-monoxide dehydrogenase (ferredoxin) activity
GO:0043886 GO:0005198 JL D structural constituent of carboxysome
GO:0043887 GO:0005215 JL D melibiose:sodium symporter activity
GO:0043888 GO:0016740 JL D (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase activity
GO:0043889 GO:0016740 JL D (S)-3-O-geranylgeranylglyceryl phosphate activity
GO:0043890 GO:0016787 JL D N-acetylgalactosamine-6-sulfatase activity
GO:0043891 GO:0003824 JL D glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity
GO:0043892 GO:0003824 JL D methylglyoxal reductase (NADPH-dependent) activity
GO:0043893 GO:0005215 JL D acetate:cation symporter activity
GO:0043894 GO:0016740 JL D protein acetyltransferase activity
GO:0043895 GO:0016740 JL D cyclomaltodextrin glucanotransferase activity
GO:0043896 GO:0016787 JL D glucan 1,6-alpha-glucosidase activity
GO:0043897 GO:0016787 JL D glucan 1,4-alpha-maltohydrolase activity
Term name changes in molecular_function ontology
GO:0015638: microcin uptake permease activity - obsolete this? --> microcin uptake permease activity
GO:0017091: AU-specific RNA binding --> AU-rich element binding
GO:0019170: D-lactaldehyde dehydrogenase activity --> methylglyoxal reductase (NADH-dependent) activity
GO:0032931: histone lysine N-methyltransferase activity (H3-K56 specific) --> histone lysine N-acetyltransferase activity (H3-K56 specific)
GO:0043365: [formate-C-acetyltransferase]-activating enzyme --> [formate-C-acetyltransferase]-activating enzyme activity
GO:0050519: holo-[acyl-carrier-protein] synthase activity --> holo-citrate lyase synthase activity
New definitions for molecular_function ontology terms (2 new definitions)
GO:0008732, L-allo-threonine aldolase activity
GO:0016799, hydrolase activity, hydrolyzing N-glycosyl compounds
New term merges in molecular_function ontology
GO:0008264 has been merged into GO:0050567, glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
GO:0010010 has been merged into GO:0047130, saccharopine dehydrogenase (NADP+, L-lysine-forming) activity
GO:0017068 has been merged into GO:0050567, glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
GO:0018540 has been merged into GO:0050625, 2-hydroxy-1,4-benzoquinone reductase activity
GO:0018840 has been merged into GO:0047466, 2-chloro-4-carboxymethylenebut-2-en-1,4-olide isomerase activity
GO:0030065 has been merged into GO:0050587, chlorite O2-lyase activity
GO:0030764 has been merged into GO:0030752, 5-hydroxyfuranocoumarin 5-O-methyltransferase activity
GO:0045432 has been merged into GO:0050589, leucocyanidin oxygenase activity
GO:0050475 has been merged into GO:0050474, (S)-norcoclaurine synthase activity
Term movements in molecular_function ontology:
Terms movements under GO Slim term 'enzyme regulator activity ; GO:0030234'
+ GO:0030337, DNA polymerase processivity factor activity
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
1067017 Fixed 18S rRNA maturation- synonym for processing of 20S pre-rRNA
1072446 Fixed New obol missing relationships
1105967 Accepted galactosylation 2 things
1110735 None additional parents?IMP biosynthesis/GMP biosynthesis
1450780 Fixed mechanosensitive ion channels (GO function)
1488957 Wont Fix photo/skotomorphogenesis
1494271 Later term merge? protein palmitoylation/protein amino acid
1566692 Fixed rRNA terms and Defs
1711527 Accepted NTR: bract development etc (3 terms)
1711561 None NTR: histone H3-K27 methylation
1716772 Accepted NTR: OPC-8:0 CoA ligase activity
1723608 Accepted ntr: methionine ABC transporter terms
1727804 Fixed change def GO:0032778
1728089 Accepted NTR: Elongator complex
1729099 Fixed Change wording of Comments
1732986 Accepted synonyms request
1744395 Accepted children of 'response to pH'?
1744496 Accepted NTR: nuclear dicing body
1754722 Fixed aromatic amino acid biosynthesis
1757389 Works For Me term merge intermembrane transport
1759080 Accepted ntr:cotranscriptional gene silencing
1759812 Accepted NTR: D/V and A/P axon guidance terms
1759980 Accepted NTR: Vps27p-Hse1p complex
1760180 Accepted ntr: gamma tubulin complex localization
1760411 Fixed query parent:DNA polymerase processivity factor activity
1760422 Fixed Okazaki fragment processing
1760484 Fixed Move GO:31510 and GO:9328 out of 'unlocalized' branch
1760557 Accepted ntr: transferrin/lactoferrin terms
1760913 Works For Me query uridine kinase activity
1762047 Fixed GO:31389 Rad17 RFC-like complex-incorrect
1764035 Accepted question regarding Request 1739177 (obsolete GO:0015997)
1765033 Accepted ntr: high affinity iron permease complex
1765583 Accepted response to testosterone
1765796 Accepted Add synonym for GO:42272
1766333 Accepted new synonym request for uridylate kinase activity GO:0009041
1766428 Fixed GO:31261 - typo in gene name in definition
1766694 Accepted NTR: transcription elongation factor core complex
1767321 Accepted response to vitamin B12
1767388 Accepted def for GO:0000472 (a rRNA processing term)
1768303 Fixed MP: age-dependent telomere shortening
1768385 Accepted 2 terms seem same MVB pathway
1768428 Fixed ntr: ESCRT-0
1768451 Accepted ntr: RNA annealing activity
1768560 Accepted response to vitamin C
1769433 Fixed TVP: cotranslational protein targeting to membrane
1769526 Accepted BRCA2-MAGED1 complex
1769534 Accepted rg:response to genistein
1769547 Accepted 'negative regulation of mammary epithelial cell proliferatio
1770018 Accepted refgen: tsc1-tsc2 protein complex
1770519 Accepted NTR: mitotic checkpoint complex (MCC)
1770992 Accepted + & - regulation of dopamine secretion
1771167 Rejected RG:SOD1-CCS protein complex
1771169 Accepted RG:SOD1-BCL2 Complex
1771174 Rejected RG:protein carbonylation
1771261 Accepted NTR: carotenoid dioxygenase activity
1771582 Accepted AU-specific RNA binding GO:0017091
1771661 Accepted RG: regulation of protein phosphatase type 2B activity
1771673 Accepted RG: SOD1-Calcineurin complex
1771688 Accepted somite rostrocaudal polarity
1771697 Works For Me incomplete def? proteolysis
1771959 Accepted Synonym request for GO:4557
1771967 Accepted response to retinoic acid
1771980 Accepted ntr: Protein exit from ER
1771985 Accepted lots of new synonyms
1773238 Accepted Updating 'stomatal complex development'
1773245 Accepted NTR: cellular response to sulfur starvation
1773281 Accepted NTR: regulation of glucosinolate biosynthetic process
1773295 Accepted NTR: UTP:glucuronate-1-phosphate uridylyltransferase activit
1773312 Accepted NTR: UTP:arabinose-1-phosphate uridylyltransferase activity
1773380 Accepted new term: silicon efflux transporter and nutrient export
1773972 Accepted NTRs: microvillus related terms
1774284 Accepted more new synonyms
1774663 Accepted synonym: endosome enlargement
1774788 Accepted ntr: nucleoside-triphosphate—adenylate kinase activity
1775055 None Parents of GO:0016887 ! ATPase activity
1776517 Fixed histone lysine N-methyltransferase activity (H3-K56 specific
1776561 Accepted a few more new synonyms
1778116 Accepted NTR: cortical endoplasmic reticulum
1778236 Accepted ntr: sulfiredoxin activity
1778442 Fixed Missing P: translation
1778468 Accepted MP: phytochelatin biosynthetic process
1778477 Works For Me possible MP? snoRNA metabolic process
1778526 Accepted MP: telomere maintenence/DNA met?
1778890 Accepted synonym request GO:4845
1779273 Accepted add syn: to riboflavin synthase
1779864 Accepted ntr: CURI coomplex
1782508 Accepted response to progesterone stimulus
1783200 Accepted synonyms for C-3 sterol dehydrogenase (C-4 sterol decarboxyl
1783500 Accepted response to vitamin K
1783706 Accepted ntr: ATP-dep 5' to 3' RNA helicase activity
780275 Fixed RNA processing
Statistics:
biological_process: 14375 terms, 98.9% defined (14216 terms defined)
cellular_component: 2121 terms, 100.0% defined (2121 terms defined)
molecular_function: 8434 terms, 95.3% defined (8041 terms defined)
Total: 24930 terms, 97.8% defined (24378 terms defined)
Term errors
none