GO Monthly Release Notes for July 2006
========================
Generated on Wed Aug  2 14:29:55 2006

Files used:
gene_ontology.obo
OLD: version 4.18, 30:06:2006 17:04
NEW: version 4.32, 31:07:2006 14:53
goslim_generic

Key:

|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941  GO:0009536  TAIR  D  SF:575119  chloroplast envelope
				 (obs)

1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name

Columns are tab-delimited and can be imported into Excel for ease of reading.

New terms in biological_process ontology (12 new terms)
GO:0002074	GO:0007275	MGI	D	      	extraocular skeletal muscle development (sensu Mammalia)
GO:0002075	GO:0007275	MGI	D	      	somitomeric trunk muscle development (sensu Mammalia)
GO:0002076	GO:0007582	MGI	D	      	osteoblast development
         	GO:0030154
GO:0002077	GO:0000003	MGI	D	1521229	acrosome matrix dispersal
         	GO:0006810
         	GO:0019538
GO:0002078	GO:0000003	MGI	D	1521229	membrane fusion during acrosome reaction
         	GO:0006810
         	GO:0016043
GO:0032118	GO:0007010	MAH	D	1490351	horsetail-astral microtubule organization and biogenesis
GO:0032119	GO:0019725	MAH	D	1499587	sequestering of zinc ion
GO:0032120	GO:0000003	MAH	D	1497433	prospore membrane formation
         	GO:0007582
         	GO:0030154
GO:0032121	GO:0007049	MAH	D	1490244	attachment of telomeres to spindle pole body
GO:0043666	GO:0050789	JL	D	1515374	regulation of phosphoprotein phosphatase activity
GO:0048844	GO:0009653	JIC	D	1530067	artery morphogenesis
GO:0048845	GO:0009653	JIC	D	1530067	venous blood vessel morphogenesis


Term name changes in biological_process ontology
GO:0000748: conjugation without cellular fusion --> conjugation with mutual genetic exchange
GO:0002072: optic cup morphogenesis (sensu mammalia) --> optic cup morphogenesis (sensu Mammalia)
GO:0002073: retina development (sensu mammalia) --> retina development (sensu Mammalia)
GO:0031322: forespore-specific spindle pole body modification --> prospore-specific spindle pole body modification


New definitions for biological_process ontology terms (1 new definitions)
GO:0007339, binding of sperm to zona pellucida


Term movements in biological_process ontology:
Terms movements under GO Slim term 'reproduction ; GO:0000003'
- GO:0000746, conjugation
- GO:0000762, pheromone-induced unidirectional conjugation
- GO:0000763, cellular morphogenesis during unidirectional conjugation
- GO:0000764, cellular morphogenesis during pheromone-induced unidirectional conjugation
- GO:0000765, response to pheromone during pheromone-induced unidirectional conjugation
- GO:0000766, adaptation to pheromone during pheromone-induced unidirectional conjugation
- GO:0009291, unidirectional conjugation
- GO:0031135, negative regulation of conjugation
- GO:0031136, positive regulation of conjugation
- GO:0046999, regulation of conjugation

Terms movements under GO Slim term 'lipid metabolism ; GO:0006629'
+ GO:0042572, retinol metabolism

Terms movements under GO Slim term 'transport ; GO:0006810'
+ GO:0007340, acrosome reaction

Terms movements under GO Slim term 'metabolism ; GO:0008152'
- GO:0042572, retinol metabolism



New terms in cellular_component ontology (26 new terms)
GO:0002079	GO:0005764	MGI	D	1521229	inner acrosomal membrane
GO:0002080	GO:0005764	MGI	D	1521229	acrosomal membrane
GO:0002081	GO:0005764	MGI	D	1521229	outer acrosomal membrane
GO:0032116	GO:0005634	MAH	D	1494199	cohesin loading complex
         	GO:0043234
GO:0032117	GO:0005856	MAH	D	1490351	horsetail-astral microtubule array
GO:0043658	GO:0005576	JL	D	1504668	host symbiosome
GO:0043659	GO:0016023	JL	D	1504668	symbiosome
GO:0043660	GO:0016023	JL	D	1504668	bacteroid-containing symbiosome
GO:0043661	GO:0016023	JL	D	1504668	peribacteroid membrane
GO:0043662	GO:0016023	JL	D	1504668	peribacteroid fluid
GO:0043663	GO:0005576	JL	D	1504668	host bacteroid-containing symbiosome
GO:0043664	GO:0005576	JL	D	1504668	host peribacteroid membrane
         	GO:0005737
GO:0043665	GO:0005576	JL	D	1504668	host peribacteroid fluid
         	GO:0005737
GO:0043667	GO:0005575	JL	D	1490469	pollen wall
GO:0043668	GO:0005575	JL	D	1490469	exine
GO:0043669	GO:0005575	JL	D	1490469	ectexine
GO:0043670	GO:0005575	JL	D	1490469	foot layer
GO:0043671	GO:0005575	JL	D	1490469	endexine
GO:0043672	GO:0005575	JL	D	1490469	nexine
GO:0043673	GO:0005575	JL	D	1490469	sexine
GO:0043674	GO:0005575	JL	D	1490469	columella
GO:0043675	GO:0005575	JL	D	1490469	sculpture element
GO:0043676	GO:0005575	JL	D	1490469	tectum
GO:0043677	GO:0005575	JL	D	1490469	germination pore
GO:0043678	GO:0005575	JL	D	1490469	intine
GO:0043679	GO:0005623	JL	D	1472273	nerve terminal


Term name changes in cellular_component ontology
GO:0005904: lipid bilayer --> plasma membrane lipid bilayer


Term movements in cellular_component ontology:
Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
+ GO:0031500, Tea1 cell-end complex






SourceForge items closed this month:

SF id	Resolution	SF item title	GO ids added, if any
1325781	Accepted	term name changes - development terms	[none]
1472273	Accepted	nerve terminal as PARTOF GO:0043005	GO:0043679
1489900	Fixed	position of "intronic snoRNA processing ; GO:0031070"	[none]
1490244	Accepted	ntr: meiotic tetheringof  telomeres to the spindle pole body	GO:0032121
1490351	Accepted	ntr: horsetail-astral array	GO:0032117 GO:0032118
1493291	Accepted	new parentage and definition tweak	[none]
1494199	Accepted	ntr:  cohesin loading complex	GO:0032116
1497433	Accepted	mp: forespore-specific spindle pole body modification	GO:0032120
1497512	Out of Date	What is in a GO identifier?	[none]
1498958	Accepted	retinoid/retinal/retinol metabolism: parentage suggestion	[none]
1499587	Accepted	EASY:sequestering of zinc ion	GO:0032119
1504668	Accepted	symbiosome and peribacteroid	GO:0043655 GO:0043656 GO:0043657 GO:0043658 GO:0043659 GO:0043660 GO:0043661 GO:0043662 GO:0043663 GO:0043664 GO:0043665
1511535	Accepted	pituitary gland development	[none]
1514460	Fixed	lipid bilayer	[none]
1515106	Fixed	GO:0005759 definition needs correction	[none]
1515374	Accepted	ntr: regulation of phosphoprotein phosphatase activity	GO:0043666
1516240	Accepted	add parent GO:0031500 : Tea1 cell-end complex	[none]
1517795	Fixed	error in GO:0008495 synonyms	[none]
1521229	Accepted	inner acrosomal membrane	GO:0002077 GO:0002079 GO:0002080 GO:0002081
1530067	Accepted	artery and vein morphogenesis terms	GO:0048844 GO:0048845



Statistics:
biological_process: 11086 terms, 98.0% defined (10869 terms defined)
cellular_component: 1899 terms, 96.7% defined (1836 terms defined)
molecular_function: 7960 terms, 92.2% defined (7338 terms defined)
Total: 20945 terms, 95.7% defined (20043 terms defined)


Term errors
none