GO Monthly Release Notes for April 2006
========================
Generated on Thu May  4 08:36:41 2006

Files used:
gene_ontology.obo
OLD: version 3.1415, 28:03:2006 16:38
NEW: version 3.1441, 28:04:2006 18:11
goslim_generic

Key:

|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941  GO:0009536  TAIR  D  SF:575119  chloroplast envelope
				 (obs)

1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name

Columns are tab-delimited and can be imported into Excel for ease of reading.

New terms in biological_process ontology (63 new terms)
GO:0002047	GO:0009058	MGI	D	      	phenazine biosynthesis
GO:0002048	GO:0008152	MGI	D	      	pyoverdine metabolism
GO:0002049	GO:0009058	MGI	D	      	pyoverdine biosynthesis
GO:0002050	GO:0009056	MGI	D	      	pyoverdine catabolism
GO:0010263	GO:0006629	TAIR	D	1438327	tricyclic triterpenoid biosynthesis
         	GO:0009058
         	GO:0019748
GO:0010264	GO:0009058	TAIR	D	1438327	phytate biosynthesis
GO:0010265	GO:0019538	TAIR	D	1438327	SCF complex assembly
GO:0010266	GO:0007154	TAIR	D	1438327	response to vitamin B1
         	GO:0007582
         	GO:0009605
         	GO:0009628
GO:0010267	GO:0006139	TAIR	D	1438327	RNA interference, production of ta-siRNAs
         	GO:0009628
         	GO:0040029
GO:0010268	GO:0007582	TAIR	D	1438327	brassinosteroid homeostasis
GO:0010269	GO:0009628	TAIR	D	1438327	response to selenium ion
GO:0010270	GO:0006091	TAIR	D	1438327	photosystem II oxygen evolving complex assembly
         	GO:0019538
GO:0010271	GO:0009056	TAIR	D	1438327	regulation of chlorophyll catabolism
         	GO:0019748
GO:0010272	GO:0009628	TAIR	D	1438327	response to silver ion
GO:0010273	GO:0009628	TAIR	D	1438327	detoxification of copper ion
GO:0010274	GO:0007582	TAIR	D	1438327	hydrotropism
         	GO:0009605
GO:0010275	GO:0019538	TAIR	D	1438327	NAD(P)H dehydrogenase complex assembly
GO:0032023	GO:0006464	MAH	D	1460757	trypsinogen activation
GO:0032024	GO:0007267	MAH	D	1463511	positive regulation of insulin secretion
         	GO:0007582
         	GO:0050789
GO:0032025	GO:0009628	MAH	D	1464311	response to cobalt ion
GO:0032026	GO:0009628	MAH	D	1464311	response to magnesium ion
GO:0032042	GO:0006259	MAH	D	1469197	mitochondrial DNA metabolism
         	GO:0007005
GO:0032043	GO:0006259	MAH	D	1469197	mitochondrial DNA catabolism
         	GO:0007005
         	GO:0009056
GO:0032048	GO:0006629	MAH	D	1474194	cardiolipin metabolism
GO:0032049	GO:0006629	MAH	D	1474194	cardiolipin biosynthesis
GO:0043627	GO:0009628	JL	D	1476047	response to estrogen stimulus
         	GO:0009719
GO:0043628	GO:0006139	JL	D	1435926	ncRNA 3'-end processing
GO:0043629	GO:0006139	JL	D	1435926	ncRNA polyadenylation
GO:0043630	GO:0006139	JL	D	1435926	ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolism
         	GO:0009056
GO:0043631	GO:0006139	JL	D	1435926	RNA polyadenylation
GO:0043632	GO:0009056	JL	D	      	modification-dependent macromolecule catabolism
GO:0043633	GO:0006139	JL	D	      	modification-dependent RNA catabolism
         	GO:0009056
GO:0043634	GO:0006139	JL	D	      	polyadenylation-dependent ncRNA catabolism
         	GO:0009056
GO:0043635	GO:0009056	JL	D	1469441	methylnaphthalene catabolism
         	GO:0009628
GO:0043636	GO:0009056	JL	D	1469441	bisphenol A catabolism
         	GO:0009628
GO:0043637	GO:0006139	JL	D	1469441	puromycin metabolism
GO:0043638	GO:0006139	JL	D	1469441	puromycin biosynthesis
         	GO:0009058
GO:0043639	GO:0008152	JL	D	1469441	benzoate catabolism
         	GO:0009628
GO:0043640	GO:0008152	JL	D	1469441	benzoate catabolism via hydroxylation
         	GO:0009628
GO:0043641	GO:0019748	JL	D	1469441	novobiocin metabolism
GO:0043642	GO:0009058	JL	D	1469441	novobiocin biosynthesis
         	GO:0019748
GO:0048800	GO:0009653	JIC	D	1101748	antennal morphogenesis
GO:0048801	GO:0009653	JIC	D	1101748	antennal joint morphogenesis
GO:0048802	GO:0009653	JIC	D	1101748	notum morphogenesis
GO:0048803	GO:0009653	JIC	D	1101748	male genitalia morphogenesis (sensu Endopterygota)
GO:0048804	GO:0009653	JIC	D	1101748	female genitalia morphogenesis (sensu Endopterygota)
GO:0048805	GO:0009653	JIC	D	1101748	genitalia morphogenesis (sensu Endopterygota)
GO:0048806	GO:0007275	JIC	D	1101748	genitalia development
GO:0048807	GO:0009653	JIC	D	1101748	female genitalia morphogenesis
GO:0048808	GO:0009653	JIC	D	1101748	male genitalia morphogenesis
GO:0051972	GO:0050789	AI	D	1449136	regulation of telomerase activity
GO:0051973	GO:0050789	AI	D	1449136	positive regulation of telomerase activity
GO:0051974	GO:0050789	AI	D	1449136	negative regulation of telomerase activity
GO:0051975	GO:0006519	AI	D	1468667	lysine biosynthesis via alpha-aminoadipate and saccharopine
         	GO:0009058
GO:0051976	GO:0006519	AI	D	1468667	lysine biosynthesis via alpha-aminoadipate and N2-acetyl-alpha-aminoadipate
         	GO:0009058
GO:0051977	GO:0006810	AI	D	1473681	lysophospholipid transport
GO:0051979	GO:0005975	AI	D	1473725	alginic acid acetylation
GO:0051983	GO:0007582	AI	D	1464783	regulation of chromosome segregation
         	GO:0050789
GO:0051984	GO:0007582	AI	D	1464783	positive regulation of chromosome segregation
         	GO:0050789
GO:0051985	GO:0007582	AI	D	1464783	negative regulation of chromosome segregation
         	GO:0050789
GO:0051986	GO:0007582	AI	D	1464783	negative regulation of attachment of spindle microtubules to kinetochore
         	GO:0050789
GO:0051987	GO:0007582	AI	D	1464783	positive regulation of attachment of spindle microtubules to kinetochore
         	GO:0050789
GO:0051988	GO:0007582	AI	D	1464783	regulation of attachment of spindle microtubules to kinetochore
         	GO:0050789


Term name changes in biological_process ontology
GO:0006303: double-strand break repair via nonhomologous end-joining --> double-strand break repair via nonhomologous end joining
GO:0007469: antennal morphogenesis --> antennal development
GO:0007477: notum morphogenesis --> notum development
GO:0007484: genitalia morphogenesis (sensu Endopterygota) --> genitalia development (sensu Endopterygota)
GO:0007485: male genitalia morphogenesis (sensu Endopterygota) --> male genitalia development (sensu Endopterygota)
GO:0007486: female genitalia morphogenesis (sensu Endopterygota) --> female genitalia development (sensu Endopterygota)
GO:0010128: anaerobic benzoate catabolism --> benzoate catabolism via CoA ligation
GO:0030539: male genitalia morphogenesis --> male genitalia development
GO:0030540: female genitalia morphogenesis --> female genitalia development
GO:0048098: antennal joint morphogenesis --> antennal joint development


Term movements in biological_process ontology:
Terms movements under GO Slim term 'mitochondrion organization and biogenesis ; GO:0007005'
+ GO:0006264, mitochondrial DNA replication

Terms movements under GO Slim term 'development ; GO:0007275'
+ GO:0007477, notum development
+ GO:0007484, genitalia development (sensu Endopterygota)
+ GO:0007485, male genitalia development (sensu Endopterygota)
+ GO:0007486, female genitalia development (sensu Endopterygota)
+ GO:0030539, male genitalia development
+ GO:0030540, female genitalia development

Terms movements under GO Slim term 'morphogenesis ; GO:0009653'
- GO:0007477, notum development
- GO:0007484, genitalia development (sensu Endopterygota)
- GO:0007485, male genitalia development (sensu Endopterygota)
- GO:0007486, female genitalia development (sensu Endopterygota)
- GO:0030539, male genitalia development
- GO:0030540, female genitalia development



New terms in cellular_component ontology (7 new terms)
GO:0014069	GO:0005856	EF	D	1461376	postsynaptic density
GO:0032039	GO:0005654	MAH	D	1455328	integrator complex
         	GO:0043234
GO:0032040	GO:0005730	MAH	D	1450841	small subunit processome
         	GO:0043234
GO:0032044	GO:0005654	MAH	D	1427382	DSIF complex
         	GO:0043234
GO:0032045	GO:0005622	MAH	D	1470632	guanyl-nucleotide exchange factor complex
         	GO:0043234
GO:0032046	GO:0005773	MAH	D	1472308	micropexophagy-specific membrane apparatus
GO:0032047	GO:0005737	MAH	D	1467708	mitosome
         	GO:0043226



New terms in molecular_function ontology (19 new terms)
GO:0032027	GO:0008092	MAH	D	1445964	myosin light chain binding
GO:0032028	GO:0008092	MAH	D	1445964	myosin head/neck binding
GO:0032029	GO:0008092	MAH	D	1445964	myosin tail binding
GO:0032030	GO:0008092	MAH	D	1445964	myosin I light chain binding
GO:0032031	GO:0008092	MAH	D	1445964	myosin I head/neck binding
GO:0032032	GO:0008092	MAH	D	1445964	myosin I tail binding
GO:0032033	GO:0008092	MAH	D	1445964	myosin II light chain binding
GO:0032034	GO:0008092	MAH	D	1445964	myosin II head/neck binding
GO:0032035	GO:0008092	MAH	D	1445964	myosin II tail binding
GO:0032036	GO:0008092	MAH	D	1445964	myosin heavy chain binding
GO:0032037	GO:0008092	MAH	D	1445964	myosin I heavy chain binding
GO:0032038	GO:0008092	MAH	D	1445964	myosin II heavy chain binding
GO:0032041	GO:0016787	MAH	D	1449995	NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0051978	GO:0005215	AI	D	1473681	lysophospholipid transporter activity
GO:0051980	GO:0005215	AI	D	1472664	iron-nicotianamine transporter activity
GO:0051981	GO:0005215	AI	D	1472664	copper chelate transporter activity
GO:0051982	GO:0005215	AI	D	1472664	copper-nicotianamine transporter activity
GO:0051989	GO:0003824	AI	D	1474222	coproporphyrinogen dehydrogenase activity
GO:0051990	GO:0003824	AI	D	1464300	(R)-2-hydroxyglutarate dehydrogenase activity


New definitions for molecular_function ontology terms (1 new definitions)
GO:0017132, cyclic nucleotide-dependent guanyl-nucleotide exchange factor activity



SourceForge items closed this month:

SF id	Resolution	SF item title	GO ids added, if any
1025157	Works For Me	the new look Cell Cycle node	GO:0050000 GO:0051227 GO:0051235 GO:0051247 GO:0051292 GO:0051293 GO:0051294 GO:0051295 GO:0051296 GO:0051297 GO:0051298 GO:0051299 GO:0051300 GO:0051301 GO:0051302 GO:0051303 GO:0051304 GO:0051305 GO:0051306 GO:0051307 GO:0051308 GO:0051309 GO:0051310 GO:0051311 GO:0051312 GO:0051313 GO:0051314 GO:0051315 GO:0051316 GO:0051317 GO:0051318 GO:0051319 GO:0051320 GO:0051321 GO:0051322 GO:0051323 GO:0051324 GO:0051325 GO:0051326 GO:0051327 GO:0051328 GO:0051329 GO:0051330 GO:0051331 GO:0051332 GO:0051337
1427382	Fixed	DISF and FACT elongation factor complexes	GO:0032044
1428548	Accepted	move pigment cell terms	[none]
1435926	Works For Me	ntr : rRNA polyadenylation and various	GO:0043628 GO:0043629 GO:0043630 GO:0043631
1438327	None	TAIR process terms -February, 2006	GO:0010263 GO:0010264 GO:0010265 GO:0010266 GO:0010267 GO:0010268 GO:0010269 GO:0010270 GO:0010271 GO:0010272 GO:0010273 GO:0010274 GO:0010275
1445964	Accepted	myosin... binding terms	GO:0032027 GO:0032028 GO:0032029 GO:0032030 GO:0032031 GO:0032032 GO:0032033 GO:0032034 GO:0032035 GO:0032036 GO:0032037 GO:0032038
1446726	Works For Me	def of GO:0043625 "delta DNA polymerase complex"	[none]
1449995	Accepted	NTR:NAD-dep. histone deacetylase activity (H3-K14 specific)	GO:0032041
1450841	Accepted	ntr: small subunit processome	GO:0032040
1455328	Accepted	NTR: Integrator complex	GO:0032039
1460757	Accepted	New term: trypsinogen activation	GO:0032023
1461376	Accepted	post synaptic density	GO:0014069
1462226	Fixed	GO: 5085 :guanyl-nucleotide exchange factor activity	[none]
1463511	Accepted	positive regulation of insulin secretion	GO:0032024
1464300	Accepted	children of GO:0047545	GO:0051990
1464311	Accepted	NTR: response to cobalt ion	GO:0032025 GO:0032026
1464783	Accepted	Regulation child term for GO:0008608	GO:0051983 GO:0051984 GO:0051985 GO:0051986 GO:0051987 GO:0051988
1467708	Accepted	mitosome	GO:0032047
1468581	Works For Me	Mitochondrial Genome	[none]
1468667	Accepted	Add new MetaCyc pathways for lysine biosynthesis	GO:0051975 GO:0051976
1468696	Accepted	mp:?sphingolipid delta-4 desaturase activity	[none]
1469197	Accepted	mtDNA sythesis, degradation and mutation	GO:0032042 GO:0032043
1469698	Fixed	definition: transcription factor activity	[none]
1469944	Fixed	synonym type and def  for GO:0005503	[none]
1470485	Accepted	synonym for GO:6303	[none]
1470632	Accepted	NTR: Guanyl-nucleotide exchange factor complex	GO:0032045
1472308	Accepted	micropexophagic apparatus	GO:0032046
1472381	Works For Me	secretory vesicle	[none]
1472538	Works For Me	Toll signalling pathway= Toll-like?	GO:0002220 GO:0002224
1472664	Accepted	iron-nicotinamine transporter activity	GO:0051980 GO:0051981 GO:0051982
1473287	Duplicate	NTR: DSIF complex & incorrect syn for FACT complex	[none]
1473681	Accepted	ntr:  lysophospholipid transport(er)	GO:0051977 GO:0051978
1473725	Accepted	ntr:  alginic acid acetylation	GO:0051979
1474194	Accepted	ntr: cardiolipin biosynthesis	GO:0032048 GO:0032049
1474222	Accepted	ntr:  coproporphyrinogen dehydrogenase	GO:0051989
1476047	Accepted	TEST:response to estrogen stimulus	GO:0043627
1476504	Accepted	synonym request; mitochondrial signaling pathway, GO:31930	[none]
1476809	Rejected	imaginal disc development	[none]
1477659	Works For Me	poss TVP: replicative cell aging	[none]
1478350	Works For Me	? identical protein binding	[none]
535294	Out of Date	unlocalized enzyme complexes	[none]



Statistics:
biological_process: 10957 terms, 98.0% defined (10741 terms defined)
cellular_component: 1822 terms, 96.3% defined (1754 terms defined)
molecular_function: 7946 terms, 92.1% defined (7322 terms defined)
Total: 20725 terms, 95.6% defined (19817 terms defined)


Term errors
none