GO Monthly Release Notes for July 2005
========================
Generated on Mon Aug 8 15:19:55 2005
Files used:
gene_ontology.obo
OLD: version 3.955, 30:06:2005 16:48
NEW: version 3.1014, 28:07:2005 15:19
goslim_generic
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in biological_process ontology (118 new terms)
GO:0001956 GO:0006810 MGI D 1035336 positive regulation of neurotransmitter secretion
GO:0007267
GO:0031524 GO:0006629 MAH D 1240755 menthol metabolism
GO:0019748
GO:0031525 GO:0006629 MAH D 1240755 menthol biosynthesis
GO:0009058
GO:0019748
GO:0031529 GO:0009653 MAH D 1241635 ruffle organization and biogenesis
GO:0016043
GO:0031532 GO:0007010 MAH D 1035336 actin cytoskeleton reorganization
GO:0031534 GO:0006810 MAH D 1236014 minus-end directed microtubule sliding
GO:0007010
GO:0031535 GO:0006810 MAH D 1236014 plus-end directed microtubule sliding
GO:0007010
GO:0031536 GO:0007049 MAH D 1243216 positive regulation of exit from mitosis
GO:0031537 GO:0006519 MAH D 1244423 regulation of anthocyanin metabolism
GO:0019748
GO:0031538 GO:0006519 MAH D 1244423 negative regulation of anthocyanin metabolism
GO:0019748
GO:0031539 GO:0006519 MAH D 1244423 positive regulation of anthocyanin metabolism
GO:0019748
GO:0031540 GO:0006519 MAH D 1244423 regulation of anthocyanin biosynthesis
GO:0009058
GO:0019748
GO:0031541 GO:0006519 MAH D 1244423 negative regulation of anthocyanin biosynthesis
GO:0009058
GO:0019748
GO:0031542 GO:0006519 MAH D 1244423 positive regulation of anthocyanin biosynthesis
GO:0009058
GO:0019748
GO:0031547 GO:0007165 MAH D 1235954 brain-derived neurotrophic factor receptor signaling pathway
GO:0031548 GO:0007165 MAH D 1235954 regulation of brain-derived neurotrophic factor receptor signaling pathway
GO:0031549 GO:0007165 MAH D 1235954 negative regulation of brain-derived neurotrophic factor receptor signaling pathway
GO:0031550 GO:0007165 MAH D 1235954 positive regulation of brain-derived neurotrophic factor receptor signaling pathway
GO:0031551 GO:0007165 MAH D 1235954 regulation of brain-derived neurotrophic factor receptor activity
GO:0031552 GO:0007165 MAH D 1235954 negative regulation of brain-derived neurotrophic factor receptor activity
GO:0031553 GO:0007165 MAH D 1235954 positive regulation of brain-derived neurotrophic factor receptor activity
GO:0031554 GO:0006350 MAH D 1240516 regulation of transcription termination
GO:0031555 GO:0006350 MAH D 1240516 transcriptional attenuation
GO:0031556 GO:0006350 MAH D 1240516 ribosome-mediated transcriptional attenuation
GO:0043412 GO:0008152 JL D 1153592 biopolymer modification
GO:0043413 GO:0008152 JL D 1153592 biopolymer glycosylation
GO:0043414 GO:0008152 JL D 1232200 biopolymer methylation
GO:0043415 GO:0006950 JL D 1234669 positive regulation of skeletal muscle regeneration
GO:0009605
GO:0009653
GO:0040007
GO:0043416 GO:0006950 JL D 1234669 regulation of skeletal muscle regeneration
GO:0009605
GO:0009653
GO:0040007
GO:0043417 GO:0006950 JL D 1234669 negative regulation of skeletal muscle regeneration
GO:0009605
GO:0009653
GO:0040007
GO:0043418 GO:0006519 JL D 1035336 homocysteine catabolism
GO:0009056
GO:0043419 GO:0008152 JL D 1035336 urea catabolism
GO:0043420 GO:0008152 JL D 1035336 anthranilate metabolism
GO:0009628
GO:0043421 GO:0009056 JL D 1035336 anthranilate catabolism
GO:0009628
GO:0043427 GO:0008152 JL D 1035336 carbon fixation by 3-hydroxypropionate cycle
GO:0043432 GO:0006464 JL D 1238270 myofibrillar protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0009056
GO:0043433 GO:0006350 JL D 1236959 negative regulation of transcription factor activity
GO:0043434 GO:0009719 JL D 1237434 response to peptide hormone stimulus
GO:0043435 GO:0009719 JL D 1237434 response to corticotropin-releasing hormone stimulus
GO:0048608 GO:0000003 JIC D 1224241 reproductive structure development
GO:0007275
GO:0048609 GO:0000003 JIC D 1224241 reproductive organismal physiological process
GO:0007582
GO:0048610 GO:0000003 JIC D 1224241 reproductive cellular physiological process
GO:0007582
GO:0048611 GO:0007275 JIC D 1185976 embryonic ectodermal gut development
GO:0048612 GO:0007275 JIC D 1185976 post-embryonic ectodermal gut development
GO:0048613 GO:0009653 JIC D 1185976 embryonic ectodermal gut morphogenesis
GO:0009790
GO:0048614 GO:0009653 JIC D 1185976 post-embryonic ectodermal gut morphogenesis
GO:0048615 GO:0009653 JIC D 1185976 embryonic anterior midgut (ectodermal) morphogenesis
GO:0009790
GO:0048616 GO:0009653 JIC D 1185976 post-embryonic anterior midgut (ectodermal) morphogenesis
GO:0048617 GO:0009653 JIC D 1185976 embryonic foregut morphogenesis
GO:0009790
GO:0048618 GO:0009653 JIC D 1185976 post-embryonic foregut morphogenesis
GO:0048619 GO:0009653 JIC D 1185976 embryonic hindgut morphogenesis
GO:0009790
GO:0048620 GO:0009653 JIC D 1185976 post-embryonic hindgut morphogenesis
GO:0048621 GO:0009653 JIC D 1185976 post-embryonic gut morphogenesis
GO:0048622 GO:0000003 JIC D 1234188 reproductive sporulation
GO:0007582
GO:0030154
GO:0048623 GO:0007275 JIC D 1035336 seed germination on parent plant
GO:0007582
GO:0048624 GO:0000003 JIC D 1035336 plantlet formation on parent plant
GO:0007275
GO:0048625 GO:0009653 JIC D 1229575 myoblast cell fate commitment
GO:0030154
GO:0048626 GO:0009653 JIC D 1229575 myoblast cell fate specification
GO:0030154
GO:0048627 GO:0009653 JIC D 1229575 myoblast development
GO:0030154
GO:0048628 GO:0009653 JIC D 1229575 myoblast maturation
GO:0030154
GO:0048629 GO:0007275 JIC D 1035336 trichome patterning
GO:0051457 GO:0007582 AI D 1214247 maintenance of protein localization in nucleus
GO:0051458 GO:0007267 AI D 1230356 adrenocorticotropin hormone secretion
GO:0007582
GO:0051459 GO:0007267 AI D 1230356 regulation of adrenocorticotropin hormone secretion
GO:0007582
GO:0051460 GO:0007267 AI D 1230356 negative regulation of adrenocorticotropin hormone secretion
GO:0007582
GO:0051461 GO:0007267 AI D 1230356 positive regulation of adrenocorticotropin hormone secretion
GO:0007582
GO:0051462 GO:0007267 AI D 1230331 regulation of cortisol secretion
GO:0007582
GO:0051463 GO:0007267 AI D 1230331 negative regulation of cortisol secretion
GO:0007582
GO:0051464 GO:0007267 AI D 1230331 positive regulation of cortisol secretion
GO:0007582
GO:0051465 GO:0007267 AI D 1230331 negative regulation of corticotropin-releasing hormone secretion
GO:0007582
GO:0051466 GO:0007267 AI D 1230331 positive regulation of corticotropin-releasing hormone secretion
GO:0007582
GO:0051467 GO:0009719 AI D 1230325 detection of steroid hormone stimulus
GO:0051468 GO:0009719 AI D 1230325 detection of glucocorticoid hormone stimulus
GO:0051469 GO:0006810 AI D vesicle fusion with vacuole
GO:0006996
GO:0051470 GO:0006810 AI D 1124304 ectoine transport
GO:0051472 GO:0005975 AI D 1124304 glucosylglycerol metabolism
GO:0051473 GO:0005975 AI D 1124304 glucosylglycerol biosynthesis
GO:0009058
GO:0051475 GO:0006810 AI D 1124304 glucosylglycerol transport
GO:0051476 GO:0006810 AI D 1124304 mannosylglycerate transport
GO:0051478 GO:0005975 AI D 1124304 mannosylglycerate metabolism
GO:0051479 GO:0005975 AI D 1124304 mannosylglycerate biosynthesis
GO:0009058
GO:0051480 GO:0019725 AI D 1231161 cytoplasmic calcium ion homeostasis
GO:0051481 GO:0019725 AI D 1231161 reduction of cytoplasmic calcium ion concentration
GO:0051482 GO:0007165 AI D 1231161 elevation of cytoplasmic calcium ion concentration during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)
GO:0019725
GO:0051483 GO:0006629 AI D 1232667 terpenoid biosynthesis, mevalonate-independent
GO:0009058
GO:0019748
GO:0051484 GO:0006629 AI D 1232667 isopentenyl diphosphate biosynthesis, mevalonate-independent pathway, during terpenoid biosynthesis
GO:0009058
GO:0019748
GO:0051485 GO:0006629 AI D 1232667 terpenoid biosynthesis, mevalonate-dependent
GO:0009058
GO:0019748
GO:0051486 GO:0006629 AI D 1232667 isopentenyl diphosphate biosynthesis, mevalonate pathway, during terpenoid biosynthesis
GO:0009058
GO:0019748
GO:0051487 GO:0007049 AI D 1187523 anaphase-promoting complex activation during meiotic cell cycle
GO:0051488 GO:0008150 AI D 1187523 anaphase-promoting complex activation
GO:0051489 GO:0009653 AI D 1241676 regulation of filopodium formation
GO:0016043
GO:0051490 GO:0009653 AI D 1241676 negative regulation of filopodium formation
GO:0016043
GO:0051491 GO:0009653 AI D 1241676 positive regulation of filopodium formation
GO:0016043
GO:0051492 GO:0007010 AI D 1241554 regulation of stress fiber formation
GO:0051493 GO:0007010 AI D 1241554 regulation of cytoskeleton organization and biogenesis
GO:0051494 GO:0007010 AI D 1241554 negative regulation of cytoskeleton organization and biogenesis
GO:0051495 GO:0007010 AI D 1241554 positive regulation of cytoskeleton organization and biogenesis
GO:0051496 GO:0007010 AI D 1241554 positive regulation of stress fiber formation
GO:0051497 GO:0007010 AI D 1241554 negative regulation of stress fiber formation
GO:0051501 GO:0006629 AI D 1240760 diterpene phytoalexin metabolism
GO:0019748
GO:0051502 GO:0006629 AI D 1240760 diterpene phytoalexin biosynthesis
GO:0019748
GO:0051503 GO:0006810 AI D 1238967 adenine nucleotide transport
GO:0051504 GO:0006629 AI D 1240760 diterpene phytoalexin precursor biosynthesis pathway
GO:0019748
GO:0051510 GO:0016049 AI D 1240136 regulation of unidimensional cell growth
GO:0051511 GO:0016049 AI D 1240136 negative regulation of unidimensional cell growth
GO:0051512 GO:0016049 AI D 1240136 positive regulation of unidimensional cell growth
GO:0051513 GO:0016049 AI D 1240136 regulation of monopolar cell growth
GO:0051514 GO:0016049 AI D 1240136 negative regulation of monopolar cell growth
GO:0051515 GO:0016049 AI D 1240136 positive regulation of monopolar cell growth
GO:0051516 GO:0016049 AI D 1240136 regulation of bipolar cell growth
GO:0051517 GO:0016049 AI D 1240136 negative regulation of bipolar cell growth
GO:0051518 GO:0016049 AI D 1240136 positive regulation of bipolar cell growth
GO:0051519 GO:0016049 AI D 1240136 activation of bipolar cell growth
GO:0051520 GO:0016049 AI D 1240136 termination of bipolar cell growth
GO:0051521 GO:0016049 AI D 1240136 termination of monopolar cell growth
GO:0051522 GO:0016049 AI D 1240136 activation of monopolar cell growth
GO:0051523 GO:0016049 AI D 1240136 cell growth mode switching, monopolar to bipolar
GO:0051524 GO:0016049 AI D 1240136 cell growth mode switch, bipolar to monopolar
New obsoletions in biological_process ontology
GO:0006698, ecdysone modification: was created to cover the conversion of ecdysone to its active form ecdysterone (20-hydroxyecdysone), but this reaction is carried out in a single step by ecdysone 20-monooxygenase (EC 1.14.99.22) and so is a function rather than a process.
Term name changes in biological_process ontology
GO:0000074: regulation of cell cycle --> regulation of progression through cell cycle
GO:0006487: N-linked glycosylation --> protein amino acid N-linked glycosylation
GO:0006493: O-linked glycosylation --> protein amino acid O-linked glycosylation
GO:0006494: terminal glycosylation --> protein amino acid terminal glycosylation
GO:0006496: terminal N-glycosylation --> protein amino acid terminal N-glycosylation
GO:0006621: protein-ER retention --> protein retention in ER
GO:0007204: positive regulation of cytosolic calcium ion concentration --> elevation of cytoplasmic calcium ion concentration
GO:0007346: regulation of mitotic cell cycle --> regulation of progression through mitotic cell cycle
GO:0007347: regulation of preblastoderm mitotic cell cycle --> regulation of progression through preblastoderm mitotic cell cycle
GO:0007348: regulation of syncytial blastoderm mitotic cell cycle --> regulation of progression through syncytial blastoderm mitotic cell cycle
GO:0009442: allantoin assimilation --> allantoin assimilation pathway
GO:0009794: regulation of mitotic cell cycle, embryonic --> regulation of progression through embryonic mitotic cell cycle
GO:0010142: mevalonate pathway --> farnesyl diphosphate biosynthesis, mevalonate pathway
GO:0018103: C-linked glycosylation --> protein amino acid C-linked glycosylation
GO:0018240: S-linked glycosylation via cysteine --> protein amino acid S-linked glycosylation via cysteine
GO:0018241: O-linked glycosylation via hydroxylysine --> protein amino acid O-linked glycosylation via hydroxylysine
GO:0018242: O-linked glycosylation via serine --> protein amino acid O-linked glycosylation via serine
GO:0018243: O-linked glycosylation via threonine --> protein amino acid O-linked glycosylation via threonine
GO:0018244: N-linked glycosylation via tryptophan --> protein amino acid N-linked glycosylation via tryptophan
GO:0018245: O-linked glycosylation via tyrosine --> protein amino acid O-linked glycosylation via tyrosine
GO:0018258: O-linked glycosylation via hydroxyproline --> protein amino acid O-linked glycosylation via hydroxyproline
GO:0018279: N-linked glycosylation via asparagine --> protein amino acid N-linked glycosylation via asparagine
GO:0018280: S-linked glycosylation --> protein amino acid S-linked glycosylation
GO:0018317: C-linked glycosylation via tryptophan --> protein amino acid C-linked glycosylation via tryptophan
GO:0018406: C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan --> protein amino acid C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan
GO:0019287: isopentenyl diphosphate biosynthesis via mevalonate --> isopentenyl diphosphate biosynthesis, mevalonate pathway
GO:0019288: mevalonate-independent isopentenyl diphosphate biosynthesis --> isopentenyl diphosphate biosynthesis, mevalonate-independent pathway
GO:0019565: aerobic glycerol fermentation --> aerobic glycerol degradation
GO:0019647: formaldehyde assimilation via ribulose-monophosphate cycle --> formaldehyde assimilation via ribulose monophosphate cycle
GO:0019648: formaldehyde assimilation via xylulose-monophosphate cycle --> formaldehyde assimilation via xylulose monophosphate cycle
GO:0019651: diacetyl fermentation --> citrate fermentation to diacetyl
GO:0019681: acetyl-CoA assimilation --> acetyl-CoA assimilation pathway
GO:0019878: lysine biosynthesis, aminoadipic pathway --> lysine biosynthesis via aminoadipic acid
GO:0042076: phosphate-linked glycosylation --> protein amino acid phosphate-linked glycosylation
GO:0042077: phosphate-linked glycosylation via serine --> protein amino acid phosphate-linked glycosylation via serine
GO:0042543: N-linked glycosylation via arginine --> protein amino acid N-linked glycosylation via arginine
GO:0045053: protein-Golgi retention --> protein retention in Golgi
GO:0045786: negative regulation of cell cycle --> negative regulation of progression through cell cycle
GO:0045787: positive regulation of cell cycle --> positive regulation of progression through cell cycle
GO:0045930: negative regulation of mitotic cell cycle --> negative regulation of progression through mitotic cell cycle
GO:0045976: negative regulation of mitotic cell cycle, embryonic --> negative regulation of progression through embryonic mitotic cell cycle
GO:0046001: negative regulation of preblastoderm mitotic cell cycle --> negative regulation of progression through preblastoderm mitotic cell cycle
GO:0046002: positive regulation of preblastoderm mitotic cell cycle --> positive regulation of progression through preblastoderm mitotic cell cycle
GO:0046003: negative regulation of syncytial blastoderm mitotic cell cycle --> negative regulation of progression through syncytial blastoderm mitotic cell cycle
GO:0046004: positive regulation of syncytial blastoderm mitotic cell cycle --> positive regulation of progression through syncytial blastoderm mitotic cell cycle
GO:0051445: regulation of meiotic cell cycle --> regulation of progression through meiotic cell cycle
GO:0051446: positive regulation of meiotic cell cycle --> positive regulation of progression through meiotic cell cycle
GO:0051447: negative regulation of meiotic cell cycle --> negative regulation of progression through meiotic cell cycle
New definitions for biological_process ontology terms (32 new definitions)
GO:0000135, septin checkpoint
GO:0006393, RNA transcription termination from mitochondrial promoter
GO:0006698, ecdysone modification
GO:0009386, translational attenuation
GO:0009442, allantoin assimilation pathway
GO:0009759, indole glucosinolate biosynthesis
GO:0015977, carbon utilization by fixation of carbon dioxide
GO:0019417, sulfur oxidation
GO:0019420, dissimilatory sulfate reduction
GO:0019421, sulfate reduction, APS pathway
GO:0019422, disproportionation of elemental sulfur
GO:0019552, glutamate fermentation via 2-hydroxyglutarate
GO:0019565, aerobic glycerol degradation
GO:0019588, glycerol fermentation
GO:0019643, reductive tricarboxylic acid cycle
GO:0019647, formaldehyde assimilation via ribulose monophosphate cycle
GO:0019648, formaldehyde assimilation via xylulose monophosphate cycle
GO:0019649, formaldehyde assimilation
GO:0019651, citrate fermentation to diacetyl
GO:0019653, purine fermentation
GO:0019657, succinate-propionate fermentation
GO:0019658, glucose fermentation to lactate and acetate
GO:0019664, mixed acid fermentation
GO:0019666, nitrogenous compound fermentation
GO:0019668, cofermentation of pairs of amino acids
GO:0019671, glutamate fermentation via mesaconate and citramalate
GO:0019672, ethanol-acetate fermentation to butyrate and caproate
GO:0019676, ammonia assimilation cycle
GO:0019681, acetyl-CoA assimilation pathway
GO:0031393, negative regulation of prostaglandin biosynthesis
GO:0042343, indole glucosinolate metabolism
GO:0042344, indole glucosinolate catabolism
New term merges in biological_process ontology
GO:0019644 has been merged into GO:0019643, reductive tricarboxylic acid cycle
Term movements in biological_process ontology:
Terms movements under GO Slim term 'reproduction ; GO:0000003'
+ GO:0001541, ovarian follicle development
+ GO:0001544, initiation of primordial ovarian follicle growth
+ GO:0001547, antral ovarian follicle growth
+ GO:0001551, ovarian follicle endowment
+ GO:0001553, luteinization
+ GO:0001554, luteolysis
+ GO:0007320, insemination
+ GO:0007321, sperm displacement
+ GO:0007565, pregnancy
+ GO:0007566, embryo implantation
+ GO:0007567, parturition
+ GO:0007595, lactation
+ GO:0007617, mating behavior
+ GO:0007618, mating
+ GO:0007619, courtship behavior
+ GO:0007620, copulation
+ GO:0007621, negative regulation of female receptivity
+ GO:0008049, male courtship behavior
+ GO:0008050, female courtship behavior
+ GO:0009793, embryonic development (sensu Magnoliophyta)
+ GO:0009829, cell wall modification during ripening
+ GO:0009835, ripening
+ GO:0009836, ripening, climacteric
+ GO:0009837, ripening, non-climacteric
+ GO:0009846, pollen germination
+ GO:0009856, pollination
+ GO:0009859, pollen hydration
+ GO:0009860, pollen tube growth
+ GO:0009865, pollen tube adhesion
+ GO:0009876, pollen adhesion
+ GO:0009900, dehiscence
+ GO:0009901, anther dehiscence
+ GO:0009942, longitudinal axis specification
+ GO:0009945, radial axis specification
+ GO:0009960, endosperm development
+ GO:0010047, fruit dehiscence
+ GO:0010064, embryonic shoot morphogenesis
+ GO:0010065, primary meristem histogenesis
+ GO:0010066, ground meristem histogenesis
+ GO:0010067, procambium histogenesis
+ GO:0010068, protoderm histogenesis
+ GO:0010069, zygote asymmetric cytokinesis (sensu Magnoliophyta)
+ GO:0010071, root meristem specification
+ GO:0010072, primary shoot apical meristem specification
+ GO:0010086, embryonic root morphogenesis
+ GO:0010162, seed dormancy
+ GO:0010183, pollen tube guidance
+ GO:0010214, seed coat development
+ GO:0010231, maintenance of dormancy
+ GO:0016542, male courtship behavior (sensu Insecta)
+ GO:0016543, male courtship behavior (sensu Insecta), orientation
+ GO:0016544, male courtship behavior (sensu Insecta), tapping
+ GO:0016545, male courtship behavior (sensu Insecta), wing vibration
+ GO:0016546, male courtship behavior (sensu Insecta), licking
+ GO:0018991, oviposition
+ GO:0019098, reproductive behavior
+ GO:0030437, sporulation (sensu Fungi)
+ GO:0030476, spore wall assembly (sensu Fungi)
+ GO:0030582, fruiting body formation
+ GO:0030583, fruiting body formation (sensu Bacteria)
+ GO:0030587, fruiting body formation (sensu Dictyosteliida)
+ GO:0031149, stalk cell differentiation
+ GO:0031150, stalk formation (sensu Dictyosteliida)
+ GO:0031152, aggregation during fruiting body formation
+ GO:0031153, slug formation during fruiting body formation
+ GO:0031154, culmination during fruiting body formation
+ GO:0031155, regulation of fruiting body formation
+ GO:0031156, regulation of fruiting body formation (sensu Dictyosteliida)
+ GO:0031157, regulation of aggregate size
+ GO:0031158, negative regulation of aggregate size
+ GO:0031159, positive regulation of aggregate size
+ GO:0031285, regulation of stalk cell differentiation
+ GO:0031286, negative regulation of stalk cell differentiation
+ GO:0031287, positive regulation of stalk cell differentiation
+ GO:0031288, fruiting body morphogenesis (sensu Dictyosteliida)
+ GO:0031321, prospore formation
+ GO:0031322, forespore-specific spindle pole body modification
+ GO:0042628, mating plug formation
+ GO:0042696, menarche
+ GO:0042697, menopause
+ GO:0042698, menstrual cycle
+ GO:0042699, follicle stimulating hormone signaling pathway
+ GO:0042700, luteinizing hormone signaling pathway
+ GO:0042701, progesterone secretion
+ GO:0042702, uterine wall growth
+ GO:0042703, menstruation
+ GO:0042704, uterine wall breakdown
+ GO:0042711, maternal behavior
+ GO:0042712, paternal behavior
+ GO:0042713, sperm ejaculation
+ GO:0043084, penile erection
+ GO:0045297, post-mating behavior
+ GO:0045433, male courtship behavior (sensu Insecta), song production
+ GO:0045434, negative regulation of female receptivity, post-mating
+ GO:0045924, regulation of female receptivity
+ GO:0045925, positive regulation of female receptivity
+ GO:0046008, regulation of female receptivity, post-mating
+ GO:0046009, positive regulation of female receptivity, post-mating
+ GO:0046662, regulation of oviposition
+ GO:0046692, sperm competition
+ GO:0046693, sperm storage
+ GO:0046694, sperm incapacitation
+ GO:0046697, decidualization
+ GO:0048042, regulation of oviposition, post-mating
+ GO:0048047, mating behavior, sex discrimination
+ GO:0048065, male courtship behavior (sensu Insecta), wing extension
+ GO:0048315, conidium formation
+ GO:0048316, seed development
+ GO:0048317, seed morphogenesis
+ GO:0048354, mucilage biosynthesis during seed coat development
+ GO:0048359, mucilage metabolism during seed coat development
+ GO:0048470, synergid degeneration
+ GO:0048508, embryonic meristem development
+ GO:0048544, recognition or rejection of self pollen
+ GO:0050876, reproductive physiological process
Terms movements under GO Slim term 'carbohydrate metabolism ; GO:0005975'
+ GO:0019648, formaldehyde assimilation via xylulose monophosphate cycle
+ GO:0019681, acetyl-CoA assimilation pathway
Terms movements under GO Slim term 'generation of precursor metabolites and energy ; GO:0006091'
- GO:0019565, aerobic glycerol degradation
+ GO:0019681, acetyl-CoA assimilation pathway
Terms movements under GO Slim term 'DNA metabolism ; GO:0006259'
+ GO:0007307, chorion gene amplification
Terms movements under GO Slim term 'transcription ; GO:0006350'
- GO:0000160, two-component signal transduction system (phosphorelay)
- GO:0000161, MAPKKK cascade during osmolarity sensing
- GO:0000167, activation of MAPKKK activity during osmolarity sensing
- GO:0000168, activation of MAPKK activity during osmolarity sensing
- GO:0000169, activation of MAPK activity during osmolarity sensing
- GO:0000173, inactivation of MAPK activity during osmolarity sensing
- GO:0000208, nuclear translocation of MAPK during osmolarity sensing
- GO:0007234, osmosensory signaling pathway via two-component system
- GO:0009866, induced systemic resistance, ethylene mediated signaling pathway
- GO:0009871, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
- GO:0009873, ethylene mediated signaling pathway
- GO:0010104, regulation of ethylene mediated signaling pathway
- GO:0010105, negative regulation of ethylene mediated signaling pathway
Terms movements under GO Slim term 'transport ; GO:0006810'
+ GO:0006118, electron transport
Terms movements under GO Slim term 'signal transduction ; GO:0007165'
- GO:0007204, elevation of cytoplasmic calcium ion concentration
Terms movements under GO Slim term 'development ; GO:0007275'
- GO:0000003, reproduction
+ GO:0000762, pheromone-induced unidirectional conjugation
+ GO:0000765, response to pheromone during pheromone-induced unidirectional conjugation
+ GO:0000766, adaptation to pheromone during pheromone-induced unidirectional conjugation
+ GO:0000905, fruiting body formation during asexual reproduction (sensu Fungi)
+ GO:0000909, fruiting body formation during sexual reproduction (sensu Fungi)
+ GO:0007116, regulation of cell budding
- GO:0007320, insemination
- GO:0007321, sperm displacement
+ GO:0007439, ectodermal gut development
+ GO:0009291, unidirectional conjugation
+ GO:0009558, cellularization of megagametophyte
+ GO:0030381, eggshell pattern formation (sensu Insecta)
+ GO:0030584, fruiting body formation (sensu Fungi)
+ GO:0031135, negative regulation of conjugation
+ GO:0031136, positive regulation of conjugation
+ GO:0031137, regulation of conjugation with cellular fusion
+ GO:0031138, negative regulation of conjugation with cellular fusion
+ GO:0031139, positive regulation of conjugation with cellular fusion
+ GO:0031140, induction of conjugation upon nutrient starvation
+ GO:0031141, induction of conjugation upon carbon starvation
+ GO:0031142, induction of conjugation upon nitrogen starvation
- GO:0042628, mating plug formation
- GO:0042713, sperm ejaculation
+ GO:0045781, negative regulation of cell budding
+ GO:0045782, positive regulation of cell budding
- GO:0046692, sperm competition
- GO:0046693, sperm storage
- GO:0046694, sperm incapacitation
+ GO:0046999, regulation of conjugation
Terms movements under GO Slim term 'physiological process ; GO:0007582'
+ GO:0007320, insemination
+ GO:0007321, sperm displacement
+ GO:0042628, mating plug formation
+ GO:0042713, sperm ejaculation
+ GO:0046692, sperm competition
+ GO:0046693, sperm storage
+ GO:0046694, sperm incapacitation
Terms movements under GO Slim term 'behavior ; GO:0007610'
+ GO:0007320, insemination
+ GO:0007321, sperm displacement
+ GO:0046692, sperm competition
+ GO:0046693, sperm storage
+ GO:0046694, sperm incapacitation
Terms movements under GO Slim term 'biological_process ; GO:0008150'
+ GO:0000003, reproduction
Terms movements under GO Slim term 'metabolism ; GO:0008152'
- GO:0009442, allantoin assimilation pathway
- GO:0019648, formaldehyde assimilation via xylulose monophosphate cycle
- GO:0019681, acetyl-CoA assimilation pathway
Terms movements under GO Slim term 'catabolism ; GO:0009056'
+ GO:0009442, allantoin assimilation pathway
+ GO:0019681, acetyl-CoA assimilation pathway
Terms movements under GO Slim term 'biosynthesis ; GO:0009058'
- GO:0006561, proline biosynthesis
Terms movements under GO Slim term 'morphogenesis ; GO:0009653'
+ GO:0045445, myoblast differentiation
+ GO:0045661, regulation of myoblast differentiation
+ GO:0045662, negative regulation of myoblast differentiation
+ GO:0045663, positive regulation of myoblast differentiation
Terms movements under GO Slim term 'embryonic development ; GO:0009790'
- GO:0007439, ectodermal gut development
- GO:0007440, foregut morphogenesis
- GO:0007441, anterior midgut (ectodermal) morphogenesis
- GO:0007442, hindgut morphogenesis
- GO:0048567, ectodermal gut morphogenesis
Terms movements under GO Slim term 'cell homeostasis ; GO:0019725'
+ GO:0007204, elevation of cytoplasmic calcium ion concentration
Terms movements under GO Slim term 'cell differentiation ; GO:0030154'
+ GO:0007520, myoblast fusion
+ GO:0030239, myofibril assembly
+ GO:0030240, muscle thin filament assembly
+ GO:0030241, muscle thick filament assembly
+ GO:0045214, sarcomere organization
New terms in cellular_component ontology (15 new terms)
GO:0031511 GO:0005694 MAH D 1220237 Mis6 centromere subcomplex
GO:0031512 GO:0005929 MAH D 1220646 motile primary cilium
GO:0031513 GO:0005929 MAH D 1035336 nonmotile primary cilium
GO:0031514 GO:0005929 MAH D 1035336 motile secondary cilium
GO:0031515 GO:0005634 MAH D 1231152 tRNA (m1A) methyltransferase complex
GO:0031518 GO:0005694 MAH D 1234901 CBF3 complex
GO:0031519 GO:0005634 MAH D 1235960 PcG protein complex
GO:0031520 GO:0005886 MAH D 1237426 plasma membrane of cell tip
GO:0031521 GO:0005623 MAH D 1238360 spitzenkorper
GO:0031522 GO:0005886 MAH D 1238462 Sec complex (sensu Bacteria)
GO:0031523 GO:0005694 MAH D 1238923 Myb complex
GO:0031526 GO:0005886 MAH D 1241629 brush border membrane
GO:0031527 GO:0005886 MAH D 1241629 filopodium membrane
GO:0031528 GO:0005886 MAH D 1241629 microvillus membrane
GO:0031533 GO:0005634 MAH D 1234838 mRNA capping enzyme complex
Term name changes in cellular_component ontology
GO:0031205: Sec complex --> Sec complex (sensu Eukaryota)
New definitions for cellular_component ontology terms (2 new definitions)
GO:0005728, extrachromosomal rDNA circle
GO:0005729, 2-micrometer circle DNA
Term movements in cellular_component ontology:
Terms movements under GO Slim term 'intracellular ; GO:0005622'
- GO:0031500, Tea1 cell-end complex
Terms movements under GO Slim term 'cell ; GO:0005623'
+ GO:0005902, microvillus
+ GO:0005903, brush border
+ GO:0030175, filopodium
Terms movements under GO Slim term 'nucleus ; GO:0005634'
+ GO:0005659, delta DNA polymerase complex
+ GO:0005660, delta-DNA polymerase cofactor complex
Terms movements under GO Slim term 'cytoskeleton ; GO:0005856'
+ GO:0031500, Tea1 cell-end complex
Terms movements under GO Slim term 'plasma membrane ; GO:0005886'
- GO:0005902, microvillus
- GO:0005903, brush border
- GO:0030175, filopodium
New terms in molecular_function ontology (34 new terms)
GO:0031516 GO:0004872 MAH D 1234807 far-red light photoreceptor activity
GO:0031517 GO:0004872 MAH D 1234810 red light photoreceptor activity
GO:0031530 GO:0005102 MAH D 1229722 gonadotropin-releasing hormone receptor binding
GO:0031531 GO:0005102 MAH D 1229722 thyrotropin-releasing hormone receptor binding
GO:0031543 GO:0003824 MAH D 1243153 peptidyl-proline dioxygenase activity
GO:0031544 GO:0003824 MAH D 1243153 peptidyl-proline 3-dioxygenase activity
GO:0031545 GO:0003824 MAH D 1243153 peptidyl-proline 4-dioxygenase activity
GO:0031546 GO:0005102 MAH D 1235954 brain-derived neurotrophic factor receptor binding
GO:0043422 GO:0005515 JL D 1234852 protein kinase B binding
GO:0043423 GO:0005515 JL D 1234852 3-phosphoinositide-dependent protein kinase binding
GO:0043424 GO:0005515 JL D 1234852 protein histidine kinase binding
GO:0043425 GO:0005515 JL D 1230800 bHLH transcription factor binding
GO:0043426 GO:0005515 JL D 1230800 MRF binding
GO:0043428 GO:0016740 JL D 1161532 2-heptaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
GO:0043429 GO:0016740 JL D 1161532 2-nonaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
GO:0043430 GO:0016740 JL D 1161532 2-decaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
GO:0043431 GO:0016740 JL D 1161532 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone methyltransferase activity
GO:0048602 GO:0005515 JIC D 1230965 fibroblast growth factor 1 binding
GO:0048603 GO:0005515 JIC D 1230965 fibroblast growth factor 2 binding
GO:0048604 GO:0005515 JIC D 1230965 fibroblast growth factor 3 binding
GO:0048605 GO:0005515 JIC D 1230965 fibroblast growth factor 4 binding
GO:0048606 GO:0005515 JIC D 1230965 fibroblast growth factor 5 binding
GO:0048607 GO:0005515 JIC D 1230965 fibroblast growth factor 6 binding
GO:0051471 GO:0005215 AI D 1124304 ectoine transporter activity
GO:0051474 GO:0005215 AI D 1124304 glucosylglycerol transporter activity
GO:0051477 GO:0005215 AI D 1124304 mannosylglycerate transporter activity
GO:0051498 GO:0003824 AI D 1240879 syn-copalyl diphosphate synthase activity
GO:0051499 GO:0016787 AI D 1240854 D-aminoacyl-tRNA deacylase activity
GO:0051500 GO:0016787 AI D 1240854 D-tyrosyl-tRNA(Tyr) deacylase activity
GO:0051505 GO:0016740 AI D 1238299 cholesterol UDP-glucosyltransferase activity
GO:0051506 GO:0016740 AI D 1238299 ergosterol UDP-glucosyltransferase activity
GO:0051507 GO:0016740 AI D 1238299 beta-sitosterol UDP-glucosyltransferase activity
GO:0051508 GO:0016740 AI D 1238299 stigmasterol UDP-glucosyltransferase activity
GO:0051509 GO:0016740 AI D 1238299 tomatidine UDP-glucosyltransferase activity
New obsoletions in molecular_function ontology
GO:0004050, apyrase activity: represents a gene product which can catalyze two reactions.
Term name changes in molecular_function ontology
GO:0004020: adenylyl-sulfate kinase activity --> adenylylsulfate kinase activity
GO:0004550: nucleoside-diphosphate kinase activity --> nucleoside diphosphate kinase activity
GO:0004673: protein-histidine kinase activity --> protein histidine kinase activity
GO:0004687: myosin-light-chain kinase activity --> myosin light chain kinase activity
GO:0004749: ribose-phosphate diphosphokinase activity --> ribose phosphate diphosphokinase activity
GO:0005403: hydrogen:sugar symporter-transporter activity --> hydrogen:sugar symporter activity
GO:0008256: protein-histidine pros-kinase activity --> protein histidine pros-kinase activity
GO:0008257: protein-histidine tele-kinase activity --> protein histidine tele-kinase activity
GO:0008353: [RNA-polymerase]-subunit kinase activity --> RNA polymerase subunit kinase activity
GO:0008440: inositol-trisphosphate 3-kinase activity --> inositol trisphosphate 3-kinase activity
GO:0008904: hygromycin-B kinase activity --> hygromycin B kinase activity
GO:0009030: thiamin-phosphate kinase activity --> thiamin phosphate kinase activity
GO:0015306: sialate transporter activity --> sialate:cation symporter activity
GO:0016905: myosin-heavy-chain kinase activity --> myosin heavy chain kinase activity
GO:0017046: polypeptide hormone binding --> peptide hormone binding
GO:0018110: histone-arginine kinase activity --> histone arginine kinase activity
GO:0035174: histone-serine kinase activity --> histone serine kinase activity
GO:0035175: histone-serine kinase activity (H3-S10 specific) --> histone serine kinase activity (H3-S10 specific)
GO:0035184: histone-threonine kinase activity --> histone threonine kinase activity
GO:0043364: catalysis of free-radical formation --> catalysis of free radical formation
GO:0046899: nucleoside-triphosphate-adenylate kinase activity --> nucleoside triphosphate adenylate kinase activity
GO:0047325: inositol-tetrakisphosphate 1-kinase activity --> inositol tetrakisphosphate 1-kinase activity
GO:0047326: inositol-tetrakisphosphate 5-kinase activity --> inositol tetrakisphosphate 5-kinase activity
GO:0047696: beta-adrenergic-receptor kinase activity --> beta-adrenergic receptor kinase activity
GO:0047758: branched-chain-fatty-acid kinase activity --> branched-chain fatty acid kinase activity
GO:0047887: farnesyl-diphosphate kinase activity --> farnesyl diphosphate kinase activity
GO:0050063: low-density-lipoprotein kinase activity --> low-density lipoprotein kinase activity
GO:0050145: nucleoside-phosphate kinase activity --> nucleoside phosphate kinase activity
GO:0050331: thiamin-diphosphate kinase activity --> thiamin diphosphate kinase activity
GO:0050516: inositol-polyphosphate multikinase activity --> inositol polyphosphate multikinase activity
GO:0050517: inositol-hexakisphosphate kinase activity --> inositol hexakisphosphate kinase activity
GO:0051428: polypeptide hormone receptor binding --> peptide hormone receptor binding
New definitions for molecular_function ontology terms (9 new definitions)
GO:0004659, prenyltransferase activity
GO:0016722, oxidoreductase activity, oxidizing metal ions
GO:0016723, oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor
GO:0016724, oxidoreductase activity, oxidizing metal ions, oxygen as acceptor
GO:0019784, NEDD8-specific protease activity
GO:0019785, ISG15-specific protease activity
GO:0019786, APG8-specific protease activity
GO:0019798, procollagen-proline dioxygenase activity
GO:0030946, protein tyrosine phosphatase activity, metal-dependent
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
1028453 Fixed cofactors, coenzymes, vitamins and prosthetic groups GO:0051180-51202
1106622 Fixed Transporter activity: new is-a links from GONG [none]
1153592 Fixed inconsistencies? N-O linked glycosylation GO:0043412-43413
1161532 Accepted ntr: ubiquinone biosynthesis methyltransferases GO:0043428-43431
1163973 Accepted transport & electron transport [none]
1170007 Accepted relationship of growth to development [none]
1181393 Fixed assimiltion common def and parent [none]
1185976 Accepted embryonic morphogenesis GO:0048565-48570 GO:0048598 GO:0048611-48621
1190985 Fixed missing parent?: apyrase activity [none]
1220237 Accepted ntr: Mis6 centromere subcomplex GO:0031511
1220646 Accepted Cilium terms GO:0031512-31512
1224241 Accepted reproductive developmental process GO:0048608-48610
1226061 Fixed unconventional myosin, GO:0016461, comment [none]
1227102 Accepted aimed at [none]
1229575 Accepted myoblast cell fate determination GO:0048625-48628
1229722 Accepted new child of "polypeptide hormone receptor bindng" GO:0031530-31531
1230325 Accepted detection of hormone stimulus GO:0051467 GO:0051468
1230800 Accepted bHLH transcription factor binding GO:0043425-43426
1230895 Fixed Transporter activity: new is-a links from GONG (last chunk) [none]
1230965 Accepted children of fibroblast growth factor binding GO:0048602-48607
1231152 Accepted tRNA (m1A) methyltransferase complex GO:0031515
1231161 Fixed positive regulation of cytosolic calcium ion concentration GO:0051480-51482
1232191 Works For Me update def: protein neddylation [none]
1232200 Accepted ntr: general "methylation" term GO:0043414
1232212 Accepted missing parent: calcium transporting ATPase activity [none]
1232667 Accepted non-mevalonate pathway GO:0051483-51486
1232819 Duplicate protein processing [none]
1233313 Accepted insemination [none]
1233456 Fixed mp: signal recognition particle (sensu Eukaryota) [none]
1233503 Accepted mp: nuclear pore [none]
1233827 Accepted synonym request: GO:0009051 [none]
1234188 Accepted sporulation GO:0048622
1234238 Duplicate Addition of existing terms to existing branches [none]
1234454 Accepted synonym request: GO:0003987 [none]
1234669 Accepted regulation of skeletal muscle regeneration GO:0043415-43417
1234700 Accepted mp: delta DNA polymerase complex [none]
1234744 Works For Me mp: ubiqutin dependent protein catabolism [none]
1234803 Accepted GO:0000160 : two-component signal transduction system (phosp [none]
1234807 Accepted far red light photoreceptor activity GO:0031516
1234810 Accepted red light photoreceptor activity GO:0031517
1234838 Accepted ntr: mRNA capping enzyme complex GO:0031533
1234852 Accepted ntr: protein kinase binding GO:0043422-43424
1234901 Accepted CBF3 complex GO:0031518
1235954 Accepted BDNF related terms GO:0031546-31553
1235960 Accepted PcG protein complex ; GO:NEW GO:0031519
1236014 Accepted new children: microtubule sliding GO:0031534-31535
1236064 Duplicate BDNF related terms [none]
1236086 Works For Me difference between?G-protein signaling types [none]
1236129 Fixed mp: myosin [none]
1236178 Fixed tpv: egulation of cyclin dependent protein kinase activity [none]
1236959 Accepted negative regulation of transcriopton factor activity GO:0043433
1237426 Accepted ntr: plasma membrane of cell tip GO:0031520
1237434 Accepted response to peptide hormone stimulus GO:0043434-43435
1238270 Accepted ubiquitination GO:0043432
1238289 Fixed typo in definition of GO:7396? [none]
1238360 Accepted Spitzenk�rper GO:0031521
1238462 Accepted Sec complex (sensu Bacteria) GO:0031522
1238923 Accepted ntr: Myb complex GO:0031523
1238949 Fixed reductive tricarboxylic acid cycle ; GO:0019643 merge [none]
1238967 Accepted new process term request - adenine nucleotide transport GO:0051503
1240136 Accepted move NETO GO:0051510-51524
1240167 Fixed add parent to Tea1 cell-end complex [none]
1240229 Accepted organize vs organise [none]
1240516 Accepted ntr: transcriptional attenuation GO:0031554-31556
1240755 Accepted menthol biosynthesis GO:0031524-31525
1240760 Accepted diterpene phytoalexins biosynthesis GO:0051501-51502 GO:0051504
1240854 Accepted ntr: D-tyrosyl-tRNA(Tyr) deacylase GO:0051499-51500
1240879 Accepted diterpene cyclase activity GO:0051498
1241554 Accepted negative/positive regulation of stress fiber formation GO:0051492-51497
1241629 Fixed synonym for ruffle and more children for cell projection? GO:0031526-31528
1241635 Accepted process term: ruffle organisation and biogenesis GO:0031529
1241676 Accepted positive/negative regulation of filopodium formation GO:0051489-51491
1241686 Accepted actin cytoskeleton remodeling [none]
1242927 Duplicate child of "regulation of neuronal synaptic plasticity" [none]
1242939 Duplicate child of "regulation of neuronal synaptic plasticity" [none]
1243107 Accepted peripheral cytoplasm [none]
1243153 Accepted ntr: HIF-type prolyl 4-hydroxylase GO:0031543-31545
1243216 Accepted ntr: postive regulation of exit from mitosis GO:0031536
1244423 Accepted regulation of anthocyanin biosynthesis GO:0031537-31542
Statistics:
biological_process: 9960 terms, 97.6% defined (9718 terms defined)
cellular_component: 1694 terms, 94.9% defined (1607 terms defined)
molecular_function: 7593 terms, 91.3% defined (6932 terms defined)
Total: 19247 terms, 94.9% defined (18257 terms defined)
Term errors
GO:0005842, cytosolic large ribosomal subunit (sensu Eukaryota)
- definition removed