GO Monthly Release Notes for March 2005
========================
Generated on Mon May 16 15:51:36 2005
Files used:
gene_ontology.obo
OLD: version 3.802, 25:02:2005 15:42
NEW: version 3.837, 30:03:2005 17:00
goslim_generic
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in biological_process ontology (64 new terms)
GO:0001949 GO:0009653 MGI D 1035336 sebaceous gland cell differentiation
GO:0030154
GO:0001951 GO:0007582 MGI D 1035336 D-glucose absorption
GO:0031268 GO:0009653 MAH D 1155827 pseudopodium organization and biogenesis
GO:0016043
GO:0031269 GO:0009653 MAH D 1143923 pseudopodium formation
GO:0016043
GO:0031270 GO:0009653 MAH D 1143923 pseudopodium retraction
GO:0016043
GO:0031271 GO:0009653 MAH D 1143923 lateral pseudopodium formation
GO:0016043
GO:0031272 GO:0009653 MAH D 1143923 regulation of pseudopodium formation
GO:0016043
GO:0031273 GO:0009653 MAH D 1143923 negative regulation of pseudopodium formation
GO:0016043
GO:0031274 GO:0009653 MAH D 1143923 positive regulation of pseudopodium formation
GO:0016043
GO:0031275 GO:0009653 MAH D 1143923 regulation of lateral pseudopodium formation
GO:0016043
GO:0031276 GO:0009653 MAH D 1143923 negative regulation of lateral pseudopodium formation
GO:0016043
GO:0031277 GO:0009653 MAH D 1143923 positive regulation of lateral pseudopodium formation
GO:0016043
GO:0031279 GO:0008150 MAH D 1156081 regulation of cyclase activity
GO:0031280 GO:0008150 MAH D 1156081 negative regulation of cyclase activity
GO:0031281 GO:0008150 MAH D 1156081 positive regulation of cyclase activity
GO:0031282 GO:0008150 MAH D 1156081 regulation of guanylate cyclase activity
GO:0031283 GO:0008150 MAH D 1156081 negative regulation of guanylate cyclase activity
GO:0031284 GO:0008150 MAH D 1156081 positive regulation of guanylate cyclase activity
GO:0031285 GO:0006950 MAH D 1156100 regulation of stalk cell differentiation
GO:0009605
GO:0030154
GO:0031286 GO:0006950 MAH D 1156100 negative regulation of stalk cell differentiation
GO:0009605
GO:0030154
GO:0031287 GO:0006950 MAH D 1156100 positive regulation of stalk cell differentiation
GO:0009605
GO:0030154
GO:0031288 GO:0006950 MAH D 1156100 fruiting body morphogenesis (sensu Dictyosteliida)
GO:0009605
GO:0009653
GO:0031289 GO:0006464 MAH D 1156857 actin phosphorylation
GO:0007010
GO:0031290 GO:0007582 MAH D 1157050 retinal ganglion cell axon guidance
GO:0007610
GO:0009653
GO:0031291 GO:0007165 MAH D 1161396 Ran protein signal transduction
GO:0031292 GO:0006259 MAH D 1162987 gene conversion at mating-type locus, DNA double-strand break processing
GO:0006950
GO:0007275
GO:0009056
GO:0009719
GO:0031293 GO:0009056 MAH D 1035336 membrane protein intracellular domain proteolysis
GO:0019538
GO:0031294 GO:0009607 MAH D 1123200 lymphocyte costimulation
GO:0031295 GO:0009607 MAH D 1123200 T-cell costimulation
GO:0031296 GO:0009607 MAH D 1123200 B-cell costimulation
GO:0031297 GO:0006259 MAH D 1035336 collapsed replication fork processing
GO:0007049
GO:0031318 GO:0009628 MAH D 1164661 folic acid sensing
GO:0031319 GO:0009628 MAH D 1164661 3',5'-cAMP sensing
GO:0031321 GO:0007582 MAH D 981361 prospore formation
GO:0030154
GO:0031322 GO:0006996 MAH D 981361 forespore specific spindle pole body modification
GO:0030154
GO:0031323 GO:0008152 MAH D 1168275 regulation of cellular metabolism
GO:0031324 GO:0008152 MAH D 1168275 negative regulation of cellular metabolism
GO:0031325 GO:0008152 MAH D 1168275 positive regulation of cellular metabolism
GO:0031326 GO:0009058 MAH D 1168275 regulation of cellular biosynthesis
GO:0031327 GO:0009058 MAH D 1168275 negative regulation of cellular biosynthesis
GO:0031328 GO:0009058 MAH D 1168275 positive regulation of cellular biosynthesis
GO:0031329 GO:0009056 MAH D 1168275 regulation of cellular catabolism
GO:0031330 GO:0009056 MAH D 1168275 negative regulation of cellular catabolism
GO:0031331 GO:0009056 MAH D 1168275 positive regulation of cellular catabolism
GO:0031333 GO:0019538 MAH D 1168484 negative regulation of protein complex assembly
GO:0031334 GO:0019538 MAH D 1168484 positive regulation of protein complex assembly
GO:0031335 GO:0006519 MAH D 1168484 regulation of sulfur amino acid metabolism
GO:0031336 GO:0006519 MAH D 1168484 negative regulation of sulfur amino acid metabolism
GO:0031337 GO:0006519 MAH D 1168484 positive regulation of sulfur amino acid metabolism
GO:0031338 GO:0006810 MAH D 1186673 regulation of vesicle fusion
GO:0031339 GO:0006810 MAH D 1168484 negative regulation of vesicle fusion
GO:0031340 GO:0006810 MAH D 1168484 positive regulation of vesicle fusion
GO:0031341 GO:0008219 MAH D 1168484 regulation of cell killing
GO:0031342 GO:0008219 MAH D 1168484 negative regulation of cell killing
GO:0031343 GO:0008219 MAH D 1168484 positive regulation of cell killing
GO:0031344 GO:0009653 MAH D 1168484 regulation of cell projection organization and biogenesis
GO:0016043
GO:0031345 GO:0009653 MAH D 1168484 negative regulation of cell projection organization and biogenesis
GO:0016043
GO:0031346 GO:0009653 MAH D 1168484 positive regulation of cell projection organization and biogenesis
GO:0016043
GO:0031347 GO:0009607 MAH D 1168484 regulation of defense response
GO:0031348 GO:0009607 MAH D 1168484 negative regulation of defense response
GO:0031349 GO:0009607 MAH D 1168484 positive regulation of defense response
GO:0043335 GO:0019538 JL D 1150110 protein unfolding
GO:0048527 GO:0007275 JIC D 1146276 lateral root development
GO:0048528 GO:0007275 JIC D 1146276 post-embryonic root development
New obsoletions in biological_process ontology
GO:0007201, G-protein dissociation: the dissociation of heterotrimeric G protein subunits is a consequence of a conformational change, which is in turn a consequence of ligand binding; it does not require multiple activities specifically to bring about.
Term name changes in biological_process ontology
GO:0000122: negative regulation of transcription from Pol II promoter --> negative regulation of transcription from RNA polymerase II promoter
GO:0006356: regulation of transcription from Pol I promoter --> regulation of transcription from RNA polymerase I promoter
GO:0006357: regulation of transcription from Pol II promoter --> regulation of transcription from RNA polymerase II promoter
GO:0006358: regulation of global transcription from Pol II promoter --> regulation of global transcription from RNA polymerase II promoter
GO:0006359: regulation of transcription from Pol III promoter --> regulation of transcription from RNA polymerase III promoter
GO:0006360: transcription from Pol I promoter --> transcription from RNA polymerase I promoter
GO:0006361: transcription initiation from Pol I promoter --> transcription initiation from RNA polymerase I promoter
GO:0006362: RNA elongation from Pol I promoter --> RNA elongation from RNA polymerase I promoter
GO:0006363: transcription termination from Pol I promoter --> transcription termination from RNA polymerase I promoter
GO:0006366: transcription from Pol II promoter --> transcription from RNA polymerase II promoter
GO:0006367: transcription initiation from Pol II promoter --> transcription initiation from RNA polymerase II promoter
GO:0006368: RNA elongation from Pol II promoter --> RNA elongation from RNA polymerase II promoter
GO:0006369: transcription termination from Pol II promoter --> transcription termination from RNA polymerase II promoter
GO:0006383: transcription from Pol III promoter --> transcription from RNA polymerase III promoter
GO:0006384: transcription initiation from Pol III promoter --> transcription initiation from RNA polymerase III promoter
GO:0006385: RNA elongation from Pol III promoter --> RNA elongation from RNA polymerase III promoter
GO:0006386: transcription termination from Pol III promoter --> transcription termination from RNA polymerase III promoter
GO:0007069: negative regulation of transcription from Pol I promoter, mitotic --> negative regulation of transcription from RNA polymerase I promoter, mitotic
GO:0007070: negative regulation of transcription from Pol II promoter, mitotic --> negative regulation of transcription from RNA polymerase II promoter, mitotic
GO:0007071: negative regulation of transcription from Pol III promoter, mitotic --> negative regulation of transcription from RNA polymerase III promoter, mitotic
GO:0007073: activation of transcription on exit from mitosis, from Pol I promoter --> activation of transcription on exit from mitosis, from RNA polymerase I promoter
GO:0007074: activation of transcription on exit from mitosis, from Pol II promoter --> activation of transcription on exit from mitosis, from RNA polymerase II promoter
GO:0007075: activation of transcription on exit from mitosis, from Pol III promoter --> activation of transcription on exit from mitosis, from RNA polymerase III promoter
GO:0007329: positive regulation of transcription from Pol II promoter by pheromones --> positive regulation of transcription from RNA polymerase II promoter by pheromones
GO:0016479: negative regulation of transcription from Pol I promoter --> negative regulation of transcription from RNA polymerase I promoter
GO:0016480: negative regulation of transcription from Pol III promoter --> negative regulation of transcription from RNA polymerase III promoter
GO:0018286: iron incorporation into iron-sulfur cluster via tris-L-cysteinyl triiron trisulfide --> iron incorporation into iron-sulfur cluster via hexakis-L-cysteinyl triiron trisulfide
GO:0030846: transcription termination from Pol II promoter, poly(A) coupled --> transcription termination from Pol II promoter, RNA polyymerase(A) coupled
GO:0030847: transcription termination from Pol II promoter, poly(A)-independent --> transcription termination from Pol II promoter, RNA polyymerase(A)-independent
GO:0042789: mRNA transcription from Pol II promoter --> mRNA transcription from RNA polymerase II promoter
GO:0042790: transcription of nuclear rRNA large Pol I transcript --> transcription of nuclear rRNA large RNA polymerase I transcript
GO:0042795: snRNA transcription from Pol II promoter --> snRNA transcription from RNA polymerase II promoter
GO:0042796: snRNA transcription from Pol III promoter --> snRNA transcription from RNA polymerase III promoter
GO:0042797: tRNA transcription from Pol III promoter --> tRNA transcription from RNA polymerase III promoter
GO:0045816: negative regulation of global transcription from Pol II promoter --> negative regulation of global transcription from RNA polymerase II promoter
GO:0045817: positive regulation of global transcription from Pol II promoter --> positive regulation of global transcription from RNA polymerase II promoter
GO:0045943: positive regulation of transcription from Pol I promoter --> positive regulation of transcription from RNA polymerase I promoter
GO:0045944: positive regulation of transcription from Pol II promoter --> positive regulation of transcription from RNA polymerase II promoter
GO:0045945: positive regulation of transcription from Pol III promoter --> positive regulation of transcription from RNA polymerase III promoter
GO:0046017: regulation of transcription from Pol I promoter, mitotic --> regulation of transcription from RNA polymerase I promoter, mitotic
GO:0046018: positive regulation of transcription from Pol I promoter, mitotic --> positive regulation of transcription from RNA polymerase I promoter, mitotic
GO:0046019: regulation of transcription from Pol II promoter by pheromones --> regulation of transcription from RNA polymerase II promoter by pheromones
GO:0046020: negative regulation of transcription from Pol II promoter by pheromones --> negative regulation of transcription from RNA polymerase II promoter by pheromones
GO:0046021: regulation of transcription from Pol II promoter, mitotic --> regulation of transcription from RNA polymerase II promoter, mitotic
GO:0046022: positive regulation of transcription from Pol II promoter, mitotic --> positive regulation of transcription from RNA polymerase II promoter, mitotic
GO:0046023: regulation of transcription from Pol III promoter, mitotic --> regulation of transcription from RNA polymerase III promoter, mitotic
GO:0046024: positive regulation of transcription from Pol III promoter, mitotic --> positive regulation of transcription from RNA polymerase III promoter, mitotic
New definitions for biological_process ontology terms (30 new definitions)
GO:0005513, calcium ion sensing
GO:0006274, DNA replication termination
GO:0006346, methylation-dependent chromatin silencing
GO:0006354, RNA elongation
GO:0006362, RNA elongation from RNA polymerase I promoter
GO:0006368, RNA elongation from RNA polymerase II promoter
GO:0006385, RNA elongation from RNA polymerase III promoter
GO:0006392, RNA elongation from mitochondrial promoter
GO:0006451, translational readthrough
GO:0006499, N-terminal protein myristoylation
GO:0006500, N-terminal protein palmitoylation
GO:0006517, protein deglycosylation
GO:0006963, antibacterial polypeptide induction
GO:0006964, anti-Gram-negative bacterial polypeptide induction
GO:0006965, anti-Gram-positive bacterial polypeptide induction
GO:0006967, antifungal polypeptide induction
GO:0007201, G-protein dissociation
GO:0008039, synaptic target recognition
GO:0008078, mesoderm cell migration
GO:0009372, quorum sensing
GO:0009665, plastid inheritance
GO:0015956, bis(5'-nucleosidyl) oligophosphate metabolism
GO:0015957, bis(5'-nucleosidyl) oligophosphate biosynthesis
GO:0015958, bis(5'-nucleosidyl) oligophosphate catabolism
GO:0016199, axon midline choice point recognition
GO:0016200, synaptic target attraction
GO:0016201, synaptic target inhibition
GO:0016447, somatic recombination of antibody genes
GO:0016556, mRNA modification
GO:0019232, perception of rate of movement
Term movements in biological_process ontology:
Terms movements under GO Slim term 'transcription ; GO:0006350'
+ GO:0006346, methylation-dependent chromatin silencing
Terms movements under GO Slim term 'amino acid and derivative metabolism ; GO:0006519'
+ GO:0001932, regulation of protein amino acid phosphorylation
+ GO:0001933, negative regulation of protein amino acid phosphorylation
+ GO:0001934, positive regulation of protein amino acid phosphorylation
+ GO:0042509, regulation of tyrosine phosphorylation of STAT protein
+ GO:0042510, regulation of tyrosine phosphorylation of Stat1 protein
+ GO:0042511, positive regulation of tyrosine phosphorylation of Stat1 protein
+ GO:0042512, negative regulation of tyrosine phosphorylation of Stat1 protein
+ GO:0042513, regulation of tyrosine phosphorylation of Stat2 protein
+ GO:0042514, negative regulation of tyrosine phosphorylation of Stat2 protein
+ GO:0042515, positive regulation of tyrosine phosphorylation of Stat2 protein
+ GO:0042516, regulation of tyrosine phosphorylation of Stat3 protein
+ GO:0042517, positive regulation of tyrosine phosphorylation of Stat3 protein
+ GO:0042518, negative regulation of tyrosine phosphorylation of Stat3 protein
+ GO:0042519, regulation of tyrosine phosphorylation of Stat4 protein
+ GO:0042520, positive regulation of tyrosine phosphorylation of Stat4 protein
+ GO:0042521, negative regulation of tyrosine phosphorylation of Stat4 protein
+ GO:0042522, regulation of tyrosine phosphorylation of Stat5 protein
+ GO:0042523, positive regulation of tyrosine phosphorylation of Stat5 protein
+ GO:0042524, negative regulation of tyrosine phosphorylation of Stat5 protein
+ GO:0042525, regulation of tyrosine phosphorylation of Stat6 protein
+ GO:0042526, positive regulation of tyrosine phosphorylation of Stat6 protein
+ GO:0042527, negative regulation of tyrosine phosphorylation of Stat6 protein
+ GO:0042528, regulation of tyrosine phosphorylation of Stat7 protein
+ GO:0042529, positive regulation of tyrosine phosphorylation of Stat7 protein
+ GO:0042530, negative regulation of tyrosine phosphorylation of Stat7 protein
+ GO:0042531, positive regulation of tyrosine phosphorylation of STAT protein
+ GO:0042532, negative regulation of tyrosine phosphorylation of STAT protein
+ GO:0050730, regulation of peptidyl-tyrosine phosphorylation
+ GO:0050731, positive regulation of peptidyl-tyrosine phosphorylation
+ GO:0050732, negative regulation of peptidyl-tyrosine phosphorylation
Terms movements under GO Slim term 'development ; GO:0007275'
- GO:0000706, meiotic DNA double-strand break processing
- GO:0000729, DNA double-strand break processing
Terms movements under GO Slim term 'physiological process ; GO:0007582'
+ GO:0007284, spermatogonial cell division
+ GO:0048137, spermatocyte cell division
Terms movements under GO Slim term 'behavior ; GO:0007610'
+ GO:0001539, ciliary or flagellar motility
+ GO:0001667, ameboid cell migration
+ GO:0001755, neural crest cell migration
+ GO:0001764, neuronal migration
+ GO:0001767, establishment of lymphocyte polarity
+ GO:0001768, establishment of T-cell polarity
+ GO:0001769, establishment of B-cell polarity
+ GO:0001770, establishment of natural killer cell polarity
+ GO:0006928, cell motility
+ GO:0006929, substrate-bound cell migration
+ GO:0006930, substrate-bound cell migration, cell extension
+ GO:0006931, substrate-bound cell migration, cell attachment to substrate
+ GO:0006932, substrate-bound cell migration, cell contraction
+ GO:0006933, substrate-bound cell migration, cell release from substrate
+ GO:0006934, substrate-bound cell migration, adhesion receptor recycling
+ GO:0007280, pole cell migration
+ GO:0007297, follicle cell migration (sensu Insecta)
+ GO:0007298, border cell migration (sensu Insecta)
+ GO:0007395, dorsal closure, spreading of leading edge cells
+ GO:0007411, axon guidance
+ GO:0007427, tracheal cell migration (sensu Insecta)
+ GO:0008045, motor axon guidance
+ GO:0008078, mesoderm cell migration
+ GO:0008347, glia cell migration
+ GO:0008354, germ cell migration
+ GO:0016198, axon choice point recognition
+ GO:0016199, axon midline choice point recognition
+ GO:0016477, cell migration
+ GO:0030317, sperm motility
+ GO:0030334, regulation of cell migration
+ GO:0030335, positive regulation of cell migration
+ GO:0030336, negative regulation of cell migration
+ GO:0030516, regulation of axon extension
+ GO:0030517, negative regulation of axon extension
+ GO:0030593, neutrophil chemotaxis
+ GO:0030595, immune cell chemotaxis
+ GO:0030982, adventurous gliding motility
+ GO:0035099, hemocyte cell migration (sensu Arthropoda)
+ GO:0035232, germ cell attraction
+ GO:0035233, germ cell repulsion
+ GO:0035234, germ cell programmed cell death
+ GO:0035313, wound healing, spreading of epidermal cells
+ GO:0040039, inductive cell migration
+ GO:0042074, cell migration during gastrulation
+ GO:0043107, TFP-dependent motility
+ GO:0045123, cellular extravasation
+ GO:0045773, positive regulation of axon extension
+ GO:0048245, eosinophil chemotaxis
+ GO:0048246, macrophage chemotaxis
+ GO:0048247, lymphocyte chemotaxis
+ GO:0050900, immune cell migration
+ GO:0050901, leukocyte tethering or rolling
+ GO:0050902, leukocyte adhesive activation
+ GO:0050903, leukocyte activation-dependent arrest
+ GO:0050904, diapedesis
+ GO:0051270, regulation of cell motility
+ GO:0051271, negative regulation of cell motility
+ GO:0051272, positive regulation of cell motility
Terms movements under GO Slim term 'catabolism ; GO:0009056'
+ GO:0031161, phosphatidylinositol catabolism
Terms movements under GO Slim term 'biosynthesis ; GO:0009058'
+ GO:0001572, lactosylceramide biosynthesis
+ GO:0001574, ganglioside biosynthesis
+ GO:0001576, globoside biosynthesis
+ GO:0006655, phosphatidylglycerol biosynthesis
+ GO:0006656, phosphatidylcholine biosynthesis
+ GO:0006657, CDP-choline pathway
+ GO:0006659, phosphatidylserine biosynthesis
+ GO:0006661, phosphatidylinositol biosynthesis
+ GO:0006663, platelet activating factor biosynthesis
+ GO:0006669, sphinganine-1-phosphate biosynthesis
+ GO:0006679, glucosylceramide biosynthesis
+ GO:0006682, galactosylceramide biosynthesis
+ GO:0006686, sphingomyelin biosynthesis
+ GO:0006688, glycosphingolipid biosynthesis
+ GO:0006694, steroid biosynthesis
+ GO:0006695, cholesterol biosynthesis
+ GO:0006696, ergosterol biosynthesis
+ GO:0008299, isoprenoid biosynthesis
+ GO:0008610, lipid biosynthesis
+ GO:0008654, phospholipid biosynthesis
+ GO:0009241, polyisoprenoid biosynthesis
+ GO:0009247, glycolipid biosynthesis
+ GO:0016091, prenol biosynthesis
+ GO:0016094, polyprenol biosynthesis
+ GO:0016126, sterol biosynthesis
+ GO:0016129, phytosteroid biosynthesis
+ GO:0016132, brassinosteroid biosynthesis
+ GO:0017180, peptidyl-diphthine biosynthesis from peptidyl-histidine
+ GO:0017183, peptidyl-diphthamide biosynthesis from peptidyl-histidine
+ GO:0018250, peptidyl-dehydroalanine biosynthesis from peptidyl-tyrosine or peptidyl-serine
+ GO:0019375, galactolipid biosynthesis
+ GO:0019408, dolichol biosynthesis
+ GO:0019879, peptidyl-thyronine biosynthesis from peptidyl-tyrosine
+ GO:0030148, sphingolipid biosynthesis
+ GO:0043048, dolichyl monophosphate biosynthesis
+ GO:0045017, glycerolipid biosynthesis
+ GO:0045337, farnesyl diphosphate biosynthesis
+ GO:0046460, neutral lipid biosynthesis
+ GO:0046467, membrane lipid biosynthesis
+ GO:0046474, glycerophospholipid biosynthesis
+ GO:0046476, glycosylceramide biosynthesis
+ GO:0046489, phosphoinositide biosynthesis
+ GO:0046511, sphinganine biosynthesis
+ GO:0046512, sphingosine biosynthesis
+ GO:0046513, ceramide biosynthesis
+ GO:0046520, sphingoid biosynthesis
+ GO:0050992, dimethylallyl diphosphate biosynthesis
Terms movements under GO Slim term 'embryonic development ; GO:0009790'
+ GO:0001892, embryonic placenta development
Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043'
+ GO:0010090, trichome morphogenesis (sensu Magnoliophyta)
+ GO:0010091, trichome branching (sensu Magnoliophyta)
Terms movements under GO Slim term 'regulation of gene expression, epigenetic ; GO:0040029'
+ GO:0006346, methylation-dependent chromatin silencing
New terms in cellular_component ontology (48 new terms)
GO:0001950 GO:0005623 MGI D 1035336 PME fraction
GO:0031251 GO:0005737 MAH D 1153378 PAN complex
GO:0031252 GO:0005623 MAH D 1143880 leading edge
GO:0031253 GO:0005886 MAH D 1143880 cell projection membrane
GO:0031254 GO:0005623 MAH D 1143880 trailing edge
GO:0031255 GO:0005623 MAH D 1143880 lateral part of motile cell
GO:0031256 GO:0005886 MAH D 1143880 leading edge membrane
GO:0031257 GO:0005886 MAH D 1143880 trailing edge membrane
GO:0031258 GO:0005886 MAH D 918955 lamellipodium membrane
GO:0031259 GO:0005886 MAH D 918955 uropod membrane
GO:0031260 GO:0005886 MAH D 1035336 pseudopodium membrane
GO:0031261 GO:0005654 MAH D 1154205 DNA replication preinitiation complex
GO:0031262 GO:0005694 MAH D 1154372 Ndc80 complex
GO:0031264 GO:0005886 MAH D 1151694 death-inducing signaling complex
GO:0031265 GO:0005886 MAH D 1151694 CD95 death-inducing signaling complex
GO:0031266 GO:0005886 MAH D 1151694 TRAIL death-inducing signaling complex
GO:0031298 GO:0005694 MAH D 1035336 replication fork protection complex
GO:0031300 GO:0005623 MAH D 1163958 intrinsic to organelle membrane
GO:0031301 GO:0005623 MAH D 1163958 integral to organelle membrane
GO:0031302 GO:0005768 MAH D 1163958 intrinsic to endosome membrane
GO:0031303 GO:0005768 MAH D 1163958 integral to endosome membrane
GO:0031304 GO:0005739 MAH D 1163958 intrinsic to mitochondrial inner membrane
GO:0031305 GO:0005739 MAH D 1163958 integral to mitochondrial inner membrane
GO:0031306 GO:0005739 MAH D 1163958 intrinsic to mitochondrial outer membrane
GO:0031307 GO:0005739 MAH D 1163958 integral to mitochondrial outer membrane
GO:0031308 GO:0005635 MAH D 1163958 intrinsic to nuclear outer membrane
GO:0031309 GO:0005635 MAH D 1163958 integral to nuclear outer membrane
GO:0031310 GO:0005773 MAH D 1163958 intrinsic to vacuolar membrane
GO:0031311 GO:0005773 MAH D 1163958 intrinsic to contractile vacuolar membrane
GO:0031312 GO:0005623 MAH D 1163958 extrinsic to organelle membrane
GO:0031313 GO:0005768 MAH D 1163958 extrinsic to endosome membrane
GO:0031314 GO:0005739 MAH D 1163958 extrinsic to mitochondrial inner membrane
GO:0031315 GO:0005739 MAH D 1163958 extrinsic to mitochondrial outer membrane
GO:0031316 GO:0005635 MAH D 1163958 extrinsic to nuclear outer membrane
GO:0031317 GO:0005623 MAH D 1164866 tripartite ATP-independent periplasmic transporter complex
GO:0031332 GO:0005622 MAH D 1035336 RNAi effector complex
GO:0031350 GO:0009536 MAH D 1163958 intrinsic to plastid membrane
GO:0031351 GO:0009536 MAH D 1163958 integral to plastid membrane
GO:0031352 GO:0009536 MAH D 1163958 intrinsic to plastid inner membrane
GO:0031353 GO:0009536 MAH D 1163958 integral to plastid inner membrane
GO:0031354 GO:0009536 MAH D 1163958 intrinsic to plastid outer membrane
GO:0031355 GO:0009536 MAH D 1163958 integral to plastid outer membrane
GO:0031356 GO:0009536 MAH D 1163958 intrinsic to chloroplast inner membrane
GO:0031357 GO:0009536 MAH D 1163958 integral to chloroplast inner membrane
GO:0031358 GO:0009536 MAH D 1163958 intrinsic to chloroplast outer membrane
GO:0031359 GO:0009536 MAH D 1163958 integral to chloroplast outer membrane
GO:0031360 GO:0009579 MAH D 1163958 intrinsic to thylakoid membrane
GO:0031361 GO:0009579 MAH D 1163958 integral to thylakoid membrane
New obsoletions in cellular_component ontology
GO:0005949, aminoadipate-semialdehyde dehydrogenase complex: the catalytic activity resides in a single polypeptide that is not part of a complex with other gene products.
GO:0009335, holo-[acyl-carrier protein] synthase complex: the catalytic activity resides in a single polypeptide rather than a complex, and the complex is represented by a different GO term.
Term name changes in cellular_component ontology
GO:0001726: ruffles --> ruffle
GO:0042601: forespore --> forespore (sensu Bacteria)
New definitions for cellular_component ontology terms (2 new definitions)
GO:0031245, extrinsic to internal side of outer membrane
GO:0031246, intrinsic to internal side of outer membrane
Term movements in cellular_component ontology:
Terms movements under GO Slim term 'nuclear chromosome ; GO:0000228'
+ GO:0030958, RITS complex
Terms movements under GO Slim term 'intracellular ; GO:0005622'
- GO:0000133, polarisome
- GO:0000145, exocyst
- GO:0005826, contractile ring
- GO:0005938, cell cortex
- GO:0005940, septin ring
- GO:0020007, apical complex
- GO:0020008, rhoptry
- GO:0020031, polar ring of apical complex
- GO:0020032, basal ring of apical complex
- GO:0031097, medial ring
- GO:0031105, septin complex
- GO:0042151, nematocyst
- GO:0045177, apical part of cell
- GO:0045178, basal part of cell
- GO:0045179, apical cortex
- GO:0045180, basal cortex
- GO:0051285, cell cortex of cell tip
Terms movements under GO Slim term 'cell ; GO:0005623'
+ GO:0001726, ruffle
+ GO:0001931, uropod
+ GO:0020007, apical complex
+ GO:0020008, rhoptry
+ GO:0020031, polar ring of apical complex
+ GO:0020032, basal ring of apical complex
+ GO:0030027, lamellipodium
+ GO:0031143, pseudopodium
+ GO:0045177, apical part of cell
+ GO:0045178, basal part of cell
Terms movements under GO Slim term 'chromosome ; GO:0005694'
- GO:0030958, RITS complex
Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
+ GO:0000133, polarisome
+ GO:0000142, contractile ring (sensu Saccharomyces)
+ GO:0000144, septin ring (sensu Saccharomyces)
+ GO:0000145, exocyst
+ GO:0005826, contractile ring
+ GO:0005938, cell cortex
+ GO:0005940, septin ring
+ GO:0030480, contractile ring (sensu Fungi)
+ GO:0030481, septin ring (sensu Fungi)
+ GO:0031097, medial ring
+ GO:0031105, septin complex
+ GO:0042151, nematocyst
+ GO:0045179, apical cortex
+ GO:0045180, basal cortex
+ GO:0051285, cell cortex of cell tip
Terms movements under GO Slim term 'plasma membrane ; GO:0005886'
- GO:0001726, ruffle
- GO:0001931, uropod
- GO:0030027, lamellipodium
- GO:0031143, pseudopodium
New terms in molecular_function ontology (8 new terms)
GO:0001948 GO:0005515 MGI D 1035336 glycoprotein binding
GO:0031263 GO:0005215 MAH D 1150178 amine-transporting ATPase activity
GO:0016787
GO:0031267 GO:0005515 MAH D 1035336 small GTPase binding
GO:0031278 GO:0016740 MAH D 1035336 alpha-1,2-galactosyltransferase activity
GO:0031299 GO:0016740 MAH D 1163327 taurine-pyruvate aminotransferase activity
GO:0031320 GO:0003824 MAH D 1163089 hexitol dehydrogenase activity
GO:0043333 GO:0016740 JL D 1151948 2-octaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
GO:0043334 GO:0016740 JL D 1151948 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
Term name changes in molecular_function ontology
GO:0001646: cAMP receptor activity --> 3',5'-cAMP receptor activity
GO:0003716: Pol I transcription termination factor activity --> RNA polymerase I transcription termination factor activity
GO:0003717: Pol II transcription termination factor activity --> RNA polymerase II transcription termination factor activity
GO:0003718: Pol III transcription termination factor activity --> RNA polymerase III transcription termination factor activity
GO:0005070: SH3/SH2 adaptor protein activity --> SH3/SH2 adaptor activity
GO:0005083: small GTPase regulatory/interacting protein activity --> small GTPase regulator activity
GO:0005093: RAB GDP-dissociation inhibitor activity --> Rab GDP-dissociation inhibitor activity
GO:0008425: ubiquinone biosynthesis methyltransferase activity --> 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
GO:0008536: RAN protein binding --> Ran GTPase binding
GO:0016922: ligand-dependent nuclear receptor interactor activity --> ligand-dependent nuclear receptor binding
GO:0016943: Pol I transcription elongation factor activity --> RNA polymerase I transcription elongation factor activity
GO:0016944: Pol II transcription elongation factor activity --> RNA polymerase II transcription elongation factor activity
GO:0016945: Pol III transcription elongation factor activity --> RNA polymerase III transcription elongation factor activity
GO:0017016: Ras interactor activity --> Ras GTPase binding
GO:0017137: Rab interactor activity --> Rab GTPase binding
GO:0017160: Ral interactor activity --> Ral GTPase binding
New definitions for molecular_function ontology terms (40 new definitions)
GO:0004923, leukemia inhibitory factor receptor activity
GO:0004924, oncostatin-M receptor activity
GO:0004925, prolactin receptor activity
GO:0004933, mating-type a-factor pheromone receptor activity
GO:0004934, mating-type alpha-factor pheromone receptor activity
GO:0004943, C3a anaphylatoxin receptor activity
GO:0004944, C5a anaphylatoxin receptor activity
GO:0004948, calcitonin receptor activity
GO:0004963, follicle stimulating hormone receptor activity
GO:0004964, lutropin-choriogonadotropic hormone receptor activity
GO:0004967, glucagon receptor activity
GO:0004968, gonadotropin-releasing hormone receptor activity
GO:0004991, parathyroid hormone receptor activity
GO:0004992, platelet activating factor receptor activity
GO:0004996, thyroid-stimulating hormone receptor activity
GO:0004998, transferrin receptor activity
GO:0005003, ephrin receptor activity
GO:0005007, fibroblast growth factor receptor activity
GO:0005008, hepatocyte growth factor receptor activity
GO:0005017, platelet-derived growth factor receptor activity
GO:0005021, vascular endothelial growth factor receptor activity
GO:0005024, transforming growth factor beta receptor activity
GO:0005070, SH3/SH2 adaptor activity
GO:0005083, small GTPase regulator activity
GO:0008192, RNA guanylyltransferase activity
GO:0008193, tRNA guanylyltransferase activity
GO:0008387, steroid 7-alpha-hydroxylase activity
GO:0008389, coumarin 7-hydroxylase activity
GO:0008396, oxysterol 7-alpha-hydroxylase activity
GO:0008397, sterol 12-alpha-hydroxylase activity
GO:0008425, 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
GO:0008759, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
GO:0008786, allose 6-phosphate isomerase activity
GO:0008813, chorismate pyruvate lyase activity
GO:0009882, blue light photoreceptor activity
GO:0015055, secretin receptor activity
GO:0016500, protein-hormone receptor activity
GO:0017049, GTP-Rho binding
GO:0017137, Rab GTPase binding
GO:0017160, Ral GTPase binding
New term merges in molecular_function ontology
GO:0004959 has been merged into GO:0016501, prostacyclin receptor activity
GO:0017031 has been merged into GO:0017048, Rho GTPase binding
Term movements in molecular_function ontology:
Terms movements under GO Slim term 'receptor activity ; GO:0004872'
- GO:0016922, ligand-dependent nuclear receptor binding
Terms movements under GO Slim term 'receptor binding ; GO:0005102'
+ GO:0016922, ligand-dependent nuclear receptor binding
Terms movements under GO Slim term 'protein binding ; GO:0005515'
+ GO:0005070, SH3/SH2 adaptor activity
+ GO:0017016, Ras GTPase binding
+ GO:0017137, Rab GTPase binding
+ GO:0017160, Ral GTPase binding
Terms movements under GO Slim term 'enzyme regulator activity ; GO:0030234'
- GO:0017016, Ras GTPase binding
- GO:0017137, Rab GTPase binding
- GO:0017160, Ral GTPase binding
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
1012059 Accepted ntr: collapsed replication fork processing GO:0031297-31298
1014825 Accepted intraflagellar transport particle-component terms GO:0030990-30993
1066827 Fixed GO:0017137 Rab interacting activity [none]
1099384 Works For Me Should 'locomotion ; GO:0040011' be a behaviour? [none]
1109123 None GOadd parent microtubule motor activity [none]
1119587 Accepted anchored vs. associated GO:0031224-31246
1119977 Fixed interactor activity vs binding [none]
1122700 Works For Me soluble variants of membrane proteins [none]
1123200 Accepted Costimulation Terms GO:0031294-31296
1124880 Fixed Obsolescence of aminoaminoadipate-semialdehyde dehydrogenase [none]
1124884 Fixed Obsolescence of holo-[ACP] synthase complex [none]
1143880 Accepted new component terms GO:0031252-31259
1143923 Accepted new terms for pseudopodium organization GO:0031268-31277
1145673 Works For Me activation versus positive regulation??? [none]
1146254 Accepted ear morphogenesis [none]
1146256 Accepted embryonic epithelium [none]
1146276 Accepted root morphogenesis GO:0048527-48528
1146277 Accepted shoot morphogenesis [none]
1150110 Accepted new term: protein unfolding GO:0043335
1150126 Accepted new synonym: ATP hyrolysis [none]
1150178 Accepted new term: amine-transporting ATPase activity GO:0031263
1151694 Accepted death-inducting signaling complex GO:0031264-31266
1151948 Accepted GO: 8425 ubiquinone biosynthesis methyltransferase activity GO:0043333-43334
1152051 Fixed GO:0007099 centriole replication (definition) [none]
1153378 Accepted PAN complex GO:0031251
1153759 Fixed Adjust parantage of BMP signaling terms [none]
1154205 Accepted ntr: pre initiation complex? GO:0031261
1154372 Accepted ntr: Ndc80 complex GO:0031262
1154442 None GO:0008122 GONE! [none]
1155827 Accepted query/ntr alpha-1,2-galactosyltransferase GO:0031268
1155905 Fixed missing parent? cell cortex of cell tip [none]
1155918 Duplicate missing parent? cell cortex of cell tip [none]
1156081 Accepted ntr: guanylate cyclase regulation GO:0031279-31284
1156100 Accepted ntrs: stalk cell differentiation & others GO:0031285-31288
1156621 Works For Me missing term? Rab GTPase binding [none]
1156857 Accepted ntr: actin phosphorylation GO:0031289
1157031 Works For Me ribonucleoside-diphosphate reductase complex [none]
1157050 Accepted new term: retinal ganglion cell axon guidance GO:0031290
1158238 Accepted missing P: mRNA polyadenylation; GOid=GO:0006378 [none]
1159085 Fixed quer missing parent chitin biosynthesis? [none]
1160082 Accepted new EC cross refs [none]
1160946 Accepted update definition: photoreceptor activity [none]
1161396 Accepted ntr: Ran GTPase signaling GO:0031291
1161442 Later missing relationship? redox related [none]
1161556 Accepted Prostaglandin receptor activity term changes [none]
1162987 Fixed tpv? DNA double-strand break processing GO:0031292
1163089 Accepted ntr: hexitol dehydrogenase GO:0031320
1163327 Accepted new term: taurine--pyruvate aminotransferase GO:0031299
1163958 Accepted component terms missing: integral to organelle membrane? GO:0031300-31316 GO:0031350-31361
1163970 Works For Me GO:0005623 : cell [none]
1163988 Rejected (cell) physiological process [none]
1164125 Fixed G protein coupled receptors [none]
1164560 Accepted GO:0005070 SH3/SH2 adaptor protein - wrong parent [none]
1164661 Accepted folate and cAMP sensing GO:0031318-31319
1164866 Accepted TRAP transporter complex GO:0031317
1166230 Accepted synonym request: protein N-acetylglucosaminyltransferase act [none]
1168265 Accepted change parent: RITS complex [none]
1168275 Accepted regulation of cellular metabolism GO:0031323-31331
1168484 Accepted obol 2005/03/19 GO:0031333-31349
1168573 Accepted some possible synonyms/ various [none]
1171957 Fixed sphinganine kinase / sphingosine kinase [none]
817291 Fixed GO:0016440/GO:0006342 [none]
918955 None ruffles and lamellipodium GO:0031258-31259
926676 Accepted polarity GO:0030950-30952
981361 Accepted ntrs etc: sporulation (sensu fungi!) GO:0031321-31322
990964 Fixed Function terms in process [none]
Statistics:
biological_process: 9600 terms, 96.9% defined (9304 terms defined)
cellular_component: 1617 terms, 94.4% defined (1527 terms defined)
molecular_function: 7479 terms, 90.5% defined (6768 terms defined)
Total: 18696 terms, 94.1% defined (17599 terms defined)
Term errors
none