GO Monthly Release Notes for January 2005 ======================== Generated on Mon Mar 7 15:03:05 2005 Files used: gene_ontology.obo OLD: version 3.688, 23:12:2004 14:08 NEW: version 3.743, 31:01:2005 17:22 goslim_generic Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in biological_process ontology (136 new terms) GO:0001941 GO:0016043 MGI D 1035336 postsynaptic membrane organization GO:0010228 GO:0007275 TAIR D 1085967 vegetative to reproductive phase transition GO:0010229 GO:0007275 TAIR D 1085967 inflorescence development GO:0010230 GO:0006091 TAIR D 1035336 alternative respiration GO:0010231 GO:0007275 TAIR D 1035336 maintenance of dormancy GO:0007582 GO:0010232 GO:0007582 TAIR D 1035336 vascular transport GO:0010233 GO:0007582 TAIR D 1035336 phloem transport GO:0010234 GO:0030154 TAIR D 1035336 tapetal cell fate specification GO:0010235 GO:0008283 TAIR D 1035336 guard mother cell cytokinesis GO:0010236 GO:0009058 TAIR D 1035336 plastoquinone biosynthesis GO:0010237 GO:0009719 TAIR D 1035336 response to amino acid stimulus GO:0010238 GO:0009719 TAIR D 1035336 response to proline GO:0010239 GO:0006139 TAIR D 1035336 chloroplast mRNA processing GO:0031098 GO:0007165 MAH D 1076778 stress-activated protein kinase signaling pathway GO:0031099 GO:0009653 MAH D 1077149 regeneration GO:0031100 GO:0009653 MAH D 1077149 organ regeneration GO:0031101 GO:0006950 MAH D 1077149 fin regeneration GO:0009605 GO:0009653 GO:0040007 GO:0031102 GO:0006950 MAH D 1077149 neurite regeneration GO:0009605 GO:0009653 GO:0040007 GO:0031103 GO:0006950 MAH D 1077149 axon regeneration GO:0009605 GO:0009653 GO:0040007 GO:0031104 GO:0006950 MAH D 1077149 dendrite regeneration GO:0009605 GO:0009653 GO:0040007 GO:0031106 GO:0008283 MAH D 1079966 septin ring organization GO:0031107 GO:0008283 MAH D 1079966 septin ring disassembly GO:0031108 GO:0006412 MAH D 1095935 holo-[acyl-carrier protein] biosynthesis GO:0031109 GO:0007010 MAH D 1081271 microtubule polymerization or depolymerization GO:0031110 GO:0007010 MAH D 1081271 regulation of microtubule polymerization or depolymerization GO:0031111 GO:0007010 MAH D 1081271 negative regulation of microtubule polymerization or depolymerization GO:0031112 GO:0007010 MAH D 1081271 positive regulation of microtubule polymerization or depolymerization GO:0031113 GO:0007010 MAH D 1081271 regulation of microtubule polymerization GO:0019538 GO:0031114 GO:0007010 MAH D 1081271 regulation of microtubule depolymerization GO:0019538 GO:0031115 GO:0007010 MAH D 1081271 negative regulation of microtubule polymerization GO:0019538 GO:0031116 GO:0007010 MAH D 1081271 positive regulation of microtubule polymerization GO:0019538 GO:0031117 GO:0007010 MAH D 1081271 positive regulation of microtubule depolymerization GO:0019538 GO:0031118 GO:0006139 MAH D 949417 rRNA pseudouridine synthesis GO:0031119 GO:0006139 MAH D 949417 tRNA pseudouridine synthesis GO:0031120 GO:0006139 MAH D 949417 snRNA pseudouridine synthesis GO:0031121 GO:0007010 MAH D 1097959 equatorial microtubule organization and biogenesis GO:0031122 GO:0007010 MAH D 1097959 cytoplasmic microtubule organization and biogenesis GO:0031123 GO:0006139 MAH D 837124 RNA 3'-end processing GO:0031124 GO:0006139 MAH D 837124 mRNA 3'-end processing GO:0031125 GO:0006139 MAH D 837124 rRNA 3'-end processing GO:0006996 GO:0007028 GO:0031126 GO:0006139 MAH D 837124 snoRNA 3'-end processing GO:0031128 GO:0007267 MAH D 944051 induction GO:0030154 GO:0031129 GO:0007267 MAH D 944051 inductive cell-cell signaling GO:0030154 GO:0031130 GO:0007267 MAH D 944051 creation of an inductive signal GO:0030154 GO:0031131 GO:0007267 MAH D 944051 reception of an inductive signal GO:0030154 GO:0031133 GO:0009653 MAH D 1102393 regulation of axon diameter GO:0031134 GO:0007010 MAH D 1098538 sister chromatid biorientation GO:0007049 GO:0031135 GO:0000003 MAH D 1077611 negative regulation of conjugation GO:0007582 GO:0031136 GO:0000003 MAH D 1077611 positive regulation of conjugation GO:0007582 GO:0031137 GO:0000003 MAH D 1077611 regulation of conjugation with cellular fusion GO:0007582 GO:0031138 GO:0000003 MAH D 1077611 negative regulation of conjugation with cellular fusion GO:0007582 GO:0031139 GO:0000003 MAH D 1077611 positive regulation of conjugation with cellular fusion GO:0007582 GO:0031140 GO:0000003 MAH D 1077611 induction of conjugation upon nutrient starvation GO:0007582 GO:0031141 GO:0000003 MAH D 1077611 induction of conjugation upon carbon starvation GO:0007582 GO:0031142 GO:0000003 MAH D 1077611 induction of conjugation upon nitrogen starvation GO:0006950 GO:0007154 GO:0009605 GO:0031144 GO:0007582 MAH D 1104483 proteasome localization GO:0031145 GO:0009056 MAH D 1104483 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism GO:0019538 GO:0031146 GO:0009056 MAH D 1104483 SCF-dependent proteasomal ubiquitin-dependent protein catabolism GO:0019538 GO:0031147 GO:0008152 MAH D 1105378 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one] metabolism GO:0031148 GO:0009058 MAH D 1105378 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one] biosynthesis GO:0031149 GO:0006950 MAH D 1105378 stalk cell differentiation GO:0009605 GO:0030154 GO:0031150 GO:0006950 MAH D 1105378 stalk formation (sensu Dictyosteliida) GO:0007275 GO:0009605 GO:0031152 GO:0006950 MAH D 1104246 aggregation during fruiting body formation GO:0007275 GO:0009605 GO:0031153 GO:0006950 MAH D 1104246 slug formation during fruiting body formation GO:0007275 GO:0009605 GO:0031154 GO:0006950 MAH D 1104246 culmination during fruiting body formation GO:0007275 GO:0009605 GO:0031155 GO:0007275 MAH D 1104246 regulation of fruiting body formation GO:0031156 GO:0006950 MAH D 1104246 regulation of fruiting body formation (sensu Dictyosteliida) GO:0007275 GO:0009605 GO:0031157 GO:0006950 MAH D 1104246 regulation of aggregate size GO:0007275 GO:0009605 GO:0031158 GO:0006950 MAH D 1104246 negative regulation of aggregate size GO:0007275 GO:0009605 GO:0031159 GO:0006950 MAH D 1104246 positive regulation of aggregate size GO:0007275 GO:0009605 GO:0031161 GO:0006629 MAH D 1111084 phosphatidylinositol catabolism GO:0035313 GO:0006950 FB D 1089145 wound healing, spreading of epidermal cells GO:0009605 GO:0035314 GO:0006950 FB D 1089145 scab formation GO:0009605 GO:0035315 GO:0009653 FB D 956691 hair cell differentiation GO:0030154 GO:0035316 GO:0009653 FB D 956691 trichome organization and biogenesis (sensu Insecta) GO:0016043 GO:0030154 GO:0035317 GO:0009653 FB D 956691 wing hair organization and biogenesis GO:0016043 GO:0030154 GO:0035318 GO:0009653 FB D 956691 wing hair outgrowth GO:0016043 GO:0030154 GO:0035319 GO:0009653 FB D 956691 wing hair elongation GO:0016043 GO:0030154 GO:0035320 GO:0007010 FB D 956691 wing hair site selection GO:0009653 GO:0030154 GO:0035321 GO:0009653 FB D 1035336 maintenance of wing hair orientation GO:0016043 GO:0030154 GO:0042000 GO:0007582 WB D 965023 translocation of peptides or proteins into host GO:0043297 GO:0007028 JL D 1035336 apical junction assembly GO:0019538 GO:0043298 GO:0007582 JL 965023 symbiotic interaction with other, non-host organism GO:0044000 GO:0007582 JL D 965023 movement within host GO:0044001 GO:0007582 JL D 965023 migration within host GO:0044002 GO:0007582 JL D 965023 acquisition of nutrients from host GO:0044003 GO:0007582 JL D 965023 modification of host morphology or physiology GO:0044004 GO:0007582 JL D 965023 disruption of host cells GO:0044005 GO:0007582 JL D 965023 induction in host of a tumor, nodule, or growth GO:0044006 GO:0007582 JL D 965023 induction in host of a tumor, nodule, or growth containing transformed cells GO:0044007 GO:0007582 JL D 965023 dissemination or transmission of an organism from a host GO:0044008 GO:0007582 JL D 965023 dissemination or transmission of an organism from a host by a vector GO:0044009 GO:0007582 JL D 965023 viral transmission by a vector GO:0016032 GO:0044010 GO:0007154 JL D 965023 single-species biofilm formation GO:0044011 GO:0007154 JL D 965023 single-species biofilm formation on inanimate substrate GO:0044399 GO:0007154 JL D 965023 multi-species biofilm formation GO:0007582 GO:0044400 GO:0007154 JL D 965023 multi-species biofilm formation on inanimate substrate GO:0007582 GO:0044401 GO:0007154 JL D 965023 multi-species biofilm formation in or on host organism GO:0007582 GO:0044402 GO:0007582 JL D 965023 competition with other, non-host, organism GO:0044403 GO:0007582 JL D 965023 symbiosis, mutualism through parasitism GO:0044404 GO:0007582 JL D 965023 symbiotic interaction between host and other organism GO:0044405 GO:0007582 JL D 965023 recognition of host GO:0044406 GO:0007582 JL D 965023 adhesion to host GO:0044407 GO:0007154 JL D 965023 single-species biofilm formation in or on host organism GO:0007582 GO:0044408 GO:0007582 JL D 965023 growth on or near host surface GO:0044409 GO:0007582 JL D 965023 entry into host GO:0044410 GO:0007582 JL D 965023 entry into host through natural portals GO:0044411 GO:0007582 JL D 965023 entry into host through host barriers GO:0044412 GO:0007582 JL D 965023 growth within host GO:0044413 GO:0007582 JL D 965023 avoidance of host defenses GO:0044414 GO:0007582 JL D 965023 suppression of host defenses GO:0044415 GO:0007582 JL D 965023 evasion of host defenses GO:0044416 GO:0007582 JL D 965023 induction of host defense response GO:0044417 GO:0007582 JL D 965023 translocation of molecules into host GO:0044418 GO:0007582 JL D 965023 translocation of DNA into host GO:0044419 GO:0007582 JL D 965023 interaction between organisms GO:0048515 GO:0000003 JIC D 1035336 spermatid cell differentiation GO:0030154 GO:0051278 GO:0005975 AI D 1075880 cell wall polysaccharide biosynthesis (sensu Fungi) GO:0009058 GO:0016043 GO:0051279 GO:0019725 AI D 1097501 regulation of release of sequestered calcium ion into cytoplasm GO:0051280 GO:0019725 AI D 1097501 negative regulation of release of sequestered calcium ion into cytoplasm GO:0051281 GO:0019725 AI D 1097501 positive regulation of release of sequestered calcium ion into cytoplasm GO:0051282 GO:0019725 AI D 1097501 regulation of sequestering of calcium ion GO:0051283 GO:0019725 AI D 1097501 negative regulation of sequestering of calcium ion GO:0051284 GO:0019725 AI D 1097501 positive regulation of sequestering of calcium ion GO:0051289 GO:0019538 AI D 1108665 protein homotetramerization GO:0051290 GO:0019538 AI D 1108694 protein heterotetramerization GO:0051291 GO:0019538 AI D 1108694 protein heterooligomerization GO:0051292 GO:0016043 AI D nuclear pore complex assembly GO:0051293 GO:0007010 AI D establishment of spindle localization GO:0051294 GO:0007010 AI D establishment of spindle orientation GO:0051295 GO:0007010 AI D establishment of meiotic spindle localization GO:0051296 GO:0007010 AI D establishment of meiotic spindle orientation GO:0051297 GO:0007010 AI D centrosome organization and biogenesis GO:0051298 GO:0007010 AI D centrosome duplication GO:0051299 GO:0007010 AI D centrosome separation GO:0007049 GO:0051300 GO:0007010 AI D spindle pole body organization and biogenesis New obsoletions in biological_process ontology GO:0001404, invasive growth: more appropriate terms were created. GO:0008220, necrosis: the term has been used in the literature by groups in different areasnof biology with a number of varying explicit and implicit definitions, and more appropriate terms were created. GO:0030383, host-pathogen interaction: more appropriate terms were created. Term name changes in biological_process ontology GO:0000132: mitotic spindle orientation --> establishment of mitotic spindle orientation GO:0001649: osteoblast differentiation --> osteoblast cell differentiation GO:0001742: oenocyte differentiation --> oenocyte cell differentiation GO:0001751: eye photoreceptor differentiation (sensu Endopterygota) --> eye photoreceptor cell differentiation (sensu Endopterygota) GO:0007026: microtubule stabilization --> negative regulation of microtubule depolymerization GO:0007204: cytosolic calcium ion concentration elevation --> positive regulation of cytosolic calcium ion concentration GO:0007256: activation of JUNKK --> activation of JNKK GO:0007257: activation of JUNK --> activation of JNK GO:0007286: spermatid development --> spermatid cell development GO:0007467: photoreceptor differentiation (sensu Endopterygota) --> photoreceptor cell differentiation (sensu Endopterygota) GO:0008377: light-induced release of internally sequestered calcium ion (Ca2+) --> light-induced release of internally sequestered calcium ion GO:0008535: cytochrome c oxidase biogenesis --> cytochrome c oxidase complex assembly GO:0009448: aminobutyrate metabolism --> gamma-aminobutyric acid metabolism GO:0009449: aminobutyrate biosynthesis --> gamma-aminobutyric acid biosynthesis GO:0009450: aminobutyrate catabolism --> gamma-aminobutyric acid catabolism GO:0009780: NADP+ reduction --> photosynthetic NADP+ reduction GO:0009994: oocyte differentiation --> oocyte cell differentiation GO:0010002: cardioblast differentiation --> cardioblast cell differentiation GO:0010026: trichome differentiation (sensu Magnoliophyta) --> trichome cell differentiation (sensu Magnoliophyta) GO:0010054: trichoblast differentiation --> trichoblast cell differentiation GO:0010190: cytochrome b6f complex biogenesis --> cytochrome b6f complex assembly GO:0015812: gamma-aminobutyrate transport --> gamma-aminobutyric acid transport GO:0017004: cytochrome biogenesis --> cytochrome complex assembly GO:0017062: cytochrome bc(1) complex biogenesis --> cytochrome bc(1) complex assembly GO:0030098: lymphocyte differentiation --> lymphocyte cell differentiation GO:0030182: neuron differentiation --> neuron cell differentiation GO:0030216: keratinocyte differentiation --> keratinocyte cell differentiation GO:0030218: erythrocyte differentiation --> erythrocyte cell differentiation GO:0030219: megakaryocyte differentiation --> megakaryocyte cell differentiation GO:0030221: basophil differentiation --> basophil cell differentiation GO:0030222: eosinophil differentiation --> eosinophil cell differentiation GO:0030223: neutrophil differentiation --> neutrophil cell differentiation GO:0030224: monocyte differentiation --> monocyte cell differentiation GO:0030225: macrophage differentiation --> macrophage cell differentiation GO:0030260: cell invasion --> entry into host cell GO:0030316: osteoclast differentiation --> osteoclast cell differentiation GO:0030318: melanocyte differentiation --> melanocyte cell differentiation GO:0030706: oocyte differentiation (sensu Insecta) --> oocyte cell differentiation (sensu Insecta) GO:0030713: stalk formation --> stalk formation (sensu Insecta) GO:0030851: granulocyte differentiation --> granulocyte cell differentiation GO:0035163: embryonic hemocyte differentiation (sensu Arthropoda) --> embryonic hemocyte cell differentiation (sensu Arthropoda) GO:0035164: embryonic plasmatocyte differentiation --> embryonic plasmatocyte cell differentiation GO:0035168: lymph gland hemocyte differentiation (sensu Arthropoda) --> lymph gland hemocyte cell differentiation (sensu Arthropoda) GO:0035169: lymph gland plasmatocyte differentiation --> lymph gland plasmatocyte cell differentiation GO:0035171: lamellocyte differentiation --> lamellocyte cell differentiation GO:0040001: mitotic spindle positioning or orientation --> establishment of mitotic spindle localization GO:0042655: activation of JUNKKK --> activation of JNKKK GO:0043158: heterocyst differentiation --> heterocyst cell differentiation GO:0045444: adipocyte differentiation --> adipocyte cell differentiation GO:0045445: myoblast differentiation --> myoblast cell differentiation GO:0045465: R8 differentiation --> R8 cell differentiation GO:0045466: R7 differentiation --> R7 cell differentiation GO:0046652: thymocyte differentiation --> thymocyte cell differentiation GO:0046718: viral entry --> viral entry into host cell GO:0048052: R1/R6 differentiation (sensu Endopterygota) --> R1/R6 cell differentiation (sensu Endopterygota) GO:0048054: R2/R5 differentiation (sensu Endopterygota) --> R2/R5 cell differentiation (sensu Endopterygota) GO:0048056: R3/R4 differentiation (sensu Endopterygota) --> R3/R4 cell differentiation (sensu Endopterygota) GO:0048312: mitochondrion positioning within the cell --> mitochondrion positioning within cell GO:0048510: regulation of timing of transition to inflorescence phase --> regulation of timing of transition from vegetative to reproductive phase GO:0050872: white adipocyte differentiation --> white adipocyte cell differentiation GO:0050873: brown adipocyte differentiation --> brown adipocyte cell differentiation GO:0050933: early stripe melanocyte differentiation --> early stripe melanocyte cell differentiation GO:0050934: late stripe melanocyte differentiation --> late stripe melanocyte cell differentiation GO:0050935: iridophore differentiation --> iridophore cell differentiation GO:0050936: xanthophore differentiation --> xanthophore cell differentiation New definitions for biological_process ontology terms (20 new definitions) GO:0006367, transcription initiation from Pol II promoter GO:0006379, mRNA cleavage GO:0006398, histone mRNA 3'-end processing GO:0006463, steroid hormone receptor complex assembly GO:0007092, anaphase-promoting complex activation GO:0007204, positive regulation of cytosolic calcium ion concentration GO:0008535, cytochrome c oxidase complex assembly GO:0009557, antipodal cell differentiation GO:0009559, female gametophyte central cell differentiation GO:0009563, synergid cell differentiation GO:0009564, formation of generative and vegetative cell GO:0009762, NADP-malic enzyme C4 photosynthesis GO:0009763, NAD-malic enzyme C4 photosynthesis GO:0009764, PEP carboxykinase C4 photosynthesis GO:0009780, photosynthetic NADP+ reduction GO:0009781, photosynthetic water oxidation GO:0017156, calcium ion-dependent exocytosis GO:0042060, wound healing GO:0042243, spore wall assembly (sensu Bacteria) GO:0042244, spore wall assembly New term merges in biological_process ontology GO:0018986 has been merged into GO:0040001, establishment of mitotic spindle localization GO:0030044 has been merged into GO:0030835, negative regulation of actin filament depolymerization GO:0030045 has been merged into GO:0030836, positive regulation of actin filament depolymerization GO:0030606 has been merged into GO:0040001, establishment of mitotic spindle localization GO:0030608 has been merged into GO:0040001, establishment of mitotic spindle localization GO:0046616 has been merged into GO:0007576, nucleolar fragmentation GO:0048271 has been merged into GO:0010026, trichome cell differentiation (sensu Magnoliophyta) GO:0048272 has been merged into GO:0010090, trichome morphogenesis (sensu Magnoliophyta) GO:0048274 has been merged into GO:0010091, trichome branching (sensu Magnoliophyta) Term movements in biological_process ontology: Terms movements under GO Slim term 'transport ; GO:0006810' - GO:0015892, iron-siderochrome transport Terms movements under GO Slim term 'ion transport ; GO:0006811' + GO:0015892, iron-siderochrome transport Terms movements under GO Slim term 'response to stress ; GO:0006950' + GO:0007596, blood coagulation + GO:0007597, blood coagulation, intrinsic pathway + GO:0007598, blood coagulation, extrinsic pathway + GO:0030168, platelet activation + GO:0030193, regulation of blood coagulation + GO:0030194, positive regulation of blood coagulation + GO:0030195, negative regulation of blood coagulation + GO:0030996, cell cycle arrest in response to nitrogen starvation + GO:0042730, fibrinolysis Terms movements under GO Slim term 'cell cycle ; GO:0007049' - GO:0000132, establishment of mitotic spindle orientation - GO:0040001, establishment of mitotic spindle localization Terms movements under GO Slim term 'cell communication ; GO:0007154' - GO:0001759, induction of an organ + GO:0019062, virion attachment + GO:0019063, virion penetration + GO:0019064, viral envelope fusion + GO:0019065, viral receptor mediated endocytosis + GO:0019066, viral translocation + GO:0020035, cytoadherence to microvasculature - GO:0030587, fruiting body formation (sensu Dictyosteliida) + GO:0030996, cell cycle arrest in response to nitrogen starvation + GO:0046596, regulation of virion penetration + GO:0046597, negative regulation of virion penetration + GO:0046598, positive regulation of virion penetration + GO:0046718, viral entry into host cell + GO:0046813, virion attachment, binding of host cell surface receptor + GO:0046814, virion attachment, binding of host cell surface coreceptor Terms movements under GO Slim term 'cell-cell signaling ; GO:0007267' + GO:0001759, induction of an organ Terms movements under GO Slim term 'physiological process ; GO:0007582' - GO:0007596, blood coagulation - GO:0007597, blood coagulation, intrinsic pathway - GO:0007598, blood coagulation, extrinsic pathway + GO:0019048, virus-host interaction + GO:0019054, viral host cell process manipulation + GO:0019056, viral perturbation of host cell transcription + GO:0019062, virion attachment + GO:0019063, virion penetration + GO:0019064, viral envelope fusion + GO:0019066, viral translocation + GO:0019087, viral transformation + GO:0019088, viral immortalization + GO:0019089, viral transmission + GO:0020035, cytoadherence to microvasculature - GO:0030168, platelet activation - GO:0030193, regulation of blood coagulation - GO:0030194, positive regulation of blood coagulation - GO:0030195, negative regulation of blood coagulation + GO:0030260, entry into host cell - GO:0042730, fibrinolysis + GO:0046596, regulation of virion penetration + GO:0046597, negative regulation of virion penetration + GO:0046598, positive regulation of virion penetration + GO:0046718, viral entry into host cell + GO:0046730, viral induction of host immune response + GO:0046731, passive viral induction of host immune response + GO:0046732, active viral induction of host immune response + GO:0046733, passive viral induction of humoral immune response + GO:0046734, passive viral induction of cell-mediated immune response + GO:0046735, passive viral induction of innate immune response + GO:0046736, active viral induction of humoral immune response + GO:0046737, active viral induction of cell-mediated immune response + GO:0046738, active viral induction of innate immune response + GO:0046739, viral spread within host + GO:0046740, viral spread within host, cell to cell + GO:0046741, viral spread within host, tissue to tissue + GO:0046778, viral perturbation of host mRNA processing + GO:0046779, viral inhibition of expression of host genes with introns + GO:0046780, viral inhibition of host mRNA splicing + GO:0046781, viral dispersion of host splicing factors + GO:0046793, virus-induced modification of host RNA polymerase II + GO:0046800, enhancement of virulence + GO:0046803, reduction of virulence + GO:0046813, virion attachment, binding of host cell surface receptor + GO:0046814, virion attachment, binding of host cell surface coreceptor Terms movements under GO Slim term 'catabolism ; GO:0009056' + GO:0007092, anaphase-promoting complex activation Terms movements under GO Slim term 'response to external stimulus ; GO:0009605' + GO:0007596, blood coagulation + GO:0007597, blood coagulation, intrinsic pathway + GO:0007598, blood coagulation, extrinsic pathway + GO:0030168, platelet activation + GO:0030193, regulation of blood coagulation + GO:0030194, positive regulation of blood coagulation + GO:0030195, negative regulation of blood coagulation + GO:0030996, cell cycle arrest in response to nitrogen starvation + GO:0042730, fibrinolysis Terms movements under GO Slim term 'morphogenesis ; GO:0009653' + GO:0042246, tissue regeneration Terms movements under GO Slim term 'embryonic development ; GO:0009790' - GO:0040035, hermaphrodite genital morphogenesis Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043' + GO:0006075, beta-1,3 glucan biosynthesis + GO:0006078, beta-1,6 glucan biosynthesis + GO:0030979, alpha-glucan biosynthesis Terms movements under GO Slim term 'protein metabolism ; GO:0019538' + GO:0007026, negative regulation of microtubule depolymerization + GO:0007027, axonemal microtubule stabilization + GO:0007043, intercellular junction assembly + GO:0007092, anaphase-promoting complex activation + GO:0016264, gap junction assembly + GO:0019991, septate junction assembly + GO:0030913, paranodal junction formation + GO:0043146, spindle stabilization + GO:0043147, meiotic spindle stabilization + GO:0043148, mitotic spindle stabilization + GO:0045186, zonula adherens assembly Terms movements under GO Slim term 'cell differentiation ; GO:0030154' + GO:0001737, establishment of wing hair orientation + GO:0001759, induction of an organ Terms movements under GO Slim term 'host-pathogen interaction ; GO:0030383' - GO:0019048, virus-host interaction - GO:0019049, viral host defense evasion - GO:0019050, viral inhibition of apoptosis - GO:0019051, induction of apoptosis by virus - GO:0019052, negative regulation of intracellular antiviral response by virus - GO:0019053, negative regulation of extracellular antiviral response by virus - GO:0019054, viral host cell process manipulation - GO:0019055, viral perturbation of cell cycle regulation - GO:0019056, viral perturbation of host cell transcription - GO:0019057, viral perturbation of host cell mRNA translation - GO:0020012, evasion of host immune response - GO:0020033, antigenic variation - GO:0020035, cytoadherence to microvasculature - GO:0030682, evasion of host defense response - GO:0030683, viral evasion of host immune response - GO:0042782, passive immune evasion - GO:0042783, active immune evasion - GO:0042784, active immune evasion via modulation of complement system - GO:0042785, active immune evasion via modulation of host-cytokine network - GO:0042786, active immune evasion via modulation of antigen-processing or presentation pathway - GO:0046730, viral induction of host immune response - GO:0046731, passive viral induction of host immune response - GO:0046732, active viral induction of host immune response - GO:0046733, passive viral induction of humoral immune response - GO:0046734, passive viral induction of cell-mediated immune response - GO:0046735, passive viral induction of innate immune response - GO:0046736, active viral induction of humoral immune response - GO:0046737, active viral induction of cell-mediated immune response - GO:0046738, active viral induction of innate immune response - GO:0046773, viral inhibition of host cell protein biosynthesis shutoff - GO:0046774, viral inhibition of intracellular interferon activity - GO:0046775, viral inhibition of host cytokine production - GO:0046776, viral inhibition of MHC class I cell surface presentation - GO:0046778, viral perturbation of host mRNA processing - GO:0046779, viral inhibition of expression of host genes with introns - GO:0046780, viral inhibition of host mRNA splicing - GO:0046781, viral dispersion of host splicing factors - GO:0046783, viral perturbation of polysomes - GO:0046791, viral inhibition of host complement neutralization - GO:0046792, viral inhibition of cell cycle arrest - GO:0046793, virus-induced modification of host RNA polymerase II Terms movements under GO Slim term 'growth ; GO:0040007' - GO:0045995, regulation of embryonic development New terms in cellular_component ontology (22 new terms) GO:0001939 GO:0005634 MGI D 1035336 female pronucleus GO:0001940 GO:0005634 MGI D 1035336 male pronucleus GO:0010240 GO:0005737 TAIR D 1035336 pyruvate dehydrogenase complex (sensu Viridiplantae) GO:0031088 GO:0016023 MAH D 1095612 platelet dense granule membrane GO:0031089 GO:0016023 MAH D 1095611 platelet dense granule lumen GO:0031090 GO:0005623 MAH D 1095759 organelle membrane GO:0031091 GO:0016023 MAH D 1095608 platelet alpha granule GO:0031092 GO:0016023 MAH D 1095610 platelet alpha granule membrane GO:0031093 GO:0016023 MAH D 1095608 platelet alpha granule lumen GO:0031094 GO:0005622 MAH D 1095656 platelet dense tubular network GO:0031095 GO:0005622 MAH D 1095656 platelet dense tubular network membrane GO:0031096 GO:0005622 MAH D 1095657 platelet dense tubular network lumen GO:0031097 GO:0005622 MAH D 1095836 medial ring GO:0031105 GO:0005622 MAH D 1079966 septin complex GO:0031143 GO:0005886 MAH D 1104256 pseudopodium GO:0031160 GO:0005618 MAH D 1105623 spore wall GO:0043292 GO:0005737 JL D 1068644 contractile fiber GO:0043293 GO:0005829 JL D 1102402 apoptosome GO:0043294 GO:0005739 JL D 1080687 mitochondrial glutamate synthase complex (NADH) GO:0043296 GO:0005886 JL D 1067569 apical junction complex GO:0051285 GO:0005622 AI D 750097 cell cortex of cell tip GO:0051286 GO:0005623 AI D 750097 cell tip New obsoletions in cellular_component ontology GO:0009352, dihydrolipoyl dehydrogenase complex: the activity dihydrolipoamide dehydrogenase is held by a single protein (Lpd1 in yeast), which is one of the components of three different complexes: 2-oxoglutarate dehydrogenase, pyruvate dehydrogenase, and branch chain amino acid dehydrogenase, so dihydrolipoamide dehydrogenase is not a complex itself. GO:0009354, dihydrolipoamide S-succinyltransferase complex: dihydrolipoamide S-succinyltransferase itself is not a complex, it is a component of the 2-oxoglutarate dehydrogenase complex, the activity dihydrolipoamide S-succinyltransferase is contained in a single polypeptide. GO:0030484, muscle fiber: a muscle fiber is a cell type rather than a cell component. GO:0048181, activin A complex: represents a homodimer; GO cellular component terms must represent complexes containing more than one gene product. GO:0048182, activin B complex: represents a homodimer; GO cellular component terms must represent complexes containing more than one gene product. Term name changes in cellular_component ontology GO:0030485: smooth muscle fiber --> smooth muscle contractile fiber New definitions for cellular_component ontology terms (5 new definitions) GO:0005760, gamma DNA polymerase complex GO:0005848, mRNA cleavage stimulating factor complex GO:0005849, mRNA cleavage factor complex GO:0005940, septin ring GO:0030481, septin ring (sensu Fungi) Term movements in cellular_component ontology: Terms movements under GO Slim term 'intracellular ; GO:0005622' + GO:0030076, light-harvesting complex Terms movements under GO Slim term 'cytoplasm ; GO:0005737' + GO:0008091, spectrin + GO:0010005, cortical microtubule (sensu Viridiplantae) + GO:0030478, actin cap + GO:0030479, actin cortical patch + GO:0030863, cortical cytoskeleton + GO:0030864, cortical actin cytoskeleton + GO:0030981, cortical microtubule cytoskeleton Terms movements under GO Slim term 'thylakoid ; GO:0009579' - GO:0030076, light-harvesting complex - GO:0030077, light-harvesting complex (sensu Proteobacteria) - GO:0030078, light-harvesting complex, core complex - GO:0030079, light-harvesting complex, peripheral complex - GO:0030080, B875 antenna complex - GO:0030081, B800-820 antenna complex - GO:0030082, B800-850 antenna complex Terms movements under GO Slim term 'cytoplasmic vesicle ; GO:0016023' + GO:0030077, light-harvesting complex (sensu Proteobacteria) + GO:0030078, light-harvesting complex, core complex + GO:0030079, light-harvesting complex, peripheral complex + GO:0030080, B875 antenna complex + GO:0030081, B800-820 antenna complex + GO:0030082, B800-850 antenna complex New terms in molecular_function ontology (7 new terms) GO:0031127 GO:0016740 MAH D 1098231 alpha(1,2)-fucosyltransferase activity GO:0031132 GO:0003824 MAH D 1101275 serine 3-dehydrogenase GO:0031151 GO:0016740 MAH D 1108394 histone lysine N-methyltransferase activity (H3-K79 specific) GO:0035312 GO:0004518 FB D 1089046 5'-3' exodeoxyribonuclease activity GO:0043295 GO:0005488 JL D 1105323 glutathione binding GO:0051287 GO:0005488 AI D 1108641 NAD binding GO:0051288 GO:0005488 AI D 1108651 NADH binding Term name changes in molecular_function ontology GO:0005334: noradrenaline:sodium symporter activity --> norephinephrine:sodium symporter activity GO:0016439: tRNA-pseudouridine synthase I activity --> tRNA-pseudouridine synthase activity GO:0031071: cysteine desulfurase --> cysteine desulfurase activity New definitions for molecular_function ontology terms (2 new definitions) GO:0009982, pseudouridine synthase activity GO:0019912, cyclin-dependent protein kinase activating kinase activity New term merges in molecular_function ontology GO:0005331 has been merged into GO:0015495, gamma-aminobutyric acid:hydrogen symporter activity GO:0010173 has been merged into GO:0005245, voltage-gated calcium channel activity GO:0015329 has been merged into GO:0015495, gamma-aminobutyric acid:hydrogen symporter activity Term movements in molecular_function ontology: Terms movements under GO Slim term 'protein kinase activity ; GO:0004672' + GO:0019912, cyclin-dependent protein kinase activating kinase activity Terms movements under GO Slim term 'transporter activity ; GO:0005215' + GO:0005298, proline:sodium symporter activity + GO:0005307, choline:sodium symporter activity + GO:0005313, L-glutamate transporter activity + GO:0005314, high-affinity glutamate transporter activity + GO:0005332, gamma-aminobutyric acid:sodium symporter activity + GO:0005395, eye pigment precursor transporter activity + GO:0008560, steroid-transporting ATPase activity + GO:0015185, L-gamma-aminobutyric acid transporter activity + GO:0015187, glycine transporter activity + GO:0015327, cystine:glutamate antiporter activity + GO:0015374, neutral, cationic amino acid:sodium:chloride symporter activity + GO:0015375, glycine:sodium symporter activity + GO:0015418, quaternary-ammonium-compound-transporting ATPase activity + GO:0015431, glutathione S-conjugate-exporting ATPase activity + GO:0015495, gamma-aminobutyric acid:hydrogen symporter activity + GO:0015501, glutamate:sodium symporter activity + GO:0042626, ATPase activity, coupled to transmembrane movement of substances + GO:0048502, thiamin-transporting ATPase activity Terms movements under GO Slim term 'neurotransmitter transporter activity ; GO:0005326' - GO:0005298, proline:sodium symporter activity - GO:0005307, choline:sodium symporter activity - GO:0005313, L-glutamate transporter activity - GO:0005314, high-affinity glutamate transporter activity - GO:0005332, gamma-aminobutyric acid:sodium symporter activity - GO:0015185, L-gamma-aminobutyric acid transporter activity - GO:0015187, glycine transporter activity - GO:0015259, glutamate channel activity - GO:0015327, cystine:glutamate antiporter activity - GO:0015374, neutral, cationic amino acid:sodium:chloride symporter activity - GO:0015375, glycine:sodium symporter activity - GO:0015495, gamma-aminobutyric acid:hydrogen symporter activity - GO:0015501, glutamate:sodium symporter activity Terms movements under GO Slim term 'binding ; GO:0005488' - GO:0004890, GABA-A receptor activity - GO:0004965, GABA-B receptor activity - GO:0016917, GABA receptor activity SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 1002562 Fixed mitotic spindle orientation/positioning [none] 1062361 Rejected nuclear periphery [none] 1068644 Fixed muscle fibre = muscle cell? GO:0043292 1075231 Accepted regulation of development [none] 1075880 Accepted new term/relationship GO:0051273-51275 GO:0051278 1076778 Accepted ntr : SAPK signaling pathway GO:0031098 1077149 Accepted new regeneration terms GO:0031099-31104 1077611 Accepted missing parent: GO:0030996 : cell cycle arrest .. GO:0031135-31142 1078241 Accepted tricarboxylic acid cycle [none] 1079966 Accepted ntr septin complex GO:0031105-31107 1080687 Fixed Glutamate synthase complexes GO:0043294 1081271 Accepted microtubule destabilization GO:0031109-31117 1081380 Accepted dihydrolipoamide dehydrogenase complex [none] 1081780 Fixed voltage-gated, voltage-sensitive, voltage-dependent [none] 1082082 Fixed iron-siderochrome transport; GOid=GO:0015892 [none] 1085510 Fixed Phagocytosis (GO:0006909), definition change request [none] 1085967 Accepted meristems and phase transitions GO:0010228-10229 1089046 Accepted 5'-3' exodeoxyribonuclease activity (new term req) GO:0035312 1089145 Accepted wound healing- a couple of new terms GO:0035313-35314 1089209 Fixed path for GABA transporter activity [none] 1095160 Invalid difference ? GO:0016282/GO:0030688 43S [none] 1095183 Fixed update def GO:0046938 phytochelatin biosynthesis [none] 1095608 Accepted platelet alpha granule lumen GO:0031091-31093 1095610 Accepted platelet alpha granule membrane GO:0031092 1095611 Accepted platelet dense granule lumen GO:0031089 1095612 Accepted platelet dense granule membrane GO:0031088 1095656 Accepted platelet dense tubular system membrane GO:0031094-31095 1095657 Accepted platelet dense tubular system lumen GO:0031096 1095759 Fixed organelle terms - def corrections and new term GO:0031090 1095836 Accepted ntr medial ring/& cytokinesis, contractile ring positioning GO:0031097 1095846 Fixed GABA transporters [none] 1095935 Accepted holo acyl carrier protein biosynthesis GO:0031108 1097127 Fixed cysteine desulfurase name change [none] 1097501 Fixed regulation terms for calicium sequestering GO:0051279-51284 1097944 Fixed query spindle elongation/bipolar spindle formation [none] 1097959 Accepted microtubule organization inconsistencies GO:0031121-31122 1097999 Duplicate spindle problems [none] 1098072 Works For Me missing parent? glucan 1,4-alpha-glucosidase activity [none] 1098231 Accepted new term: alpha(1,2)-fucosyltransferase activity GO:0031127 1098538 Accepted sister chromatid biorientation GO:0031134 1099447 Works For Me diff telomerase activity/telomeric template RNA reverse [none] 1099570 Accepted regulation of embryonic development [none] 1099578 Works For Me query telomere cap complex [none] 1099707 Accepted def change: glycoprotein-N-acetylgalactosamine 3-beta-galact [none] 1100980 Fixed homodimers to obsolete (48181 and 48182) [none] 1101275 Accepted serine 3-dehydrogenase GO:0031132 1101564 Accepted +syn.amidophosphoribosyltransferase activity [none] 1101671 Works For Me quick question mating(-) type [none] 1101940 Accepted Obsoletion of dihydrolipoamide S-succinyltransferase [none] 1102393 Accepted regulation of axon diameter GO:0031133 1102402 Accepted New term: apoptosome GO:0043293 1104237 Fixed cellular response to starvation: fruiting body formation [none] 1104246 Accepted ntr: Dicty development GO:0031152-31159 1104256 Accepted ntr: pseudopodium GO:0031143 1104483 Accepted NTR proteasome localization GO:0031144-31146 1104613 Works For Me missing parent? external side of plasma membrane [none] 1104661 Accepted add synonym [none] 1105312 Fixed missing parent [none] 1105323 Accepted glutathione binding GO:0043295 1105345 Accepted new synomyn: sporulation (30435) =spore differentiation [none] 1105378 Accepted More new terms for dicty development GO:0031147-31150 1105459 Fixed parents for ATPase activity, coupled to transmembrane moveme [none] 1105623 Accepted ntr: spore coat and spore coat biosynthesis GO:0031160 1105955 Fixed update metabolism defs [none] 1106582 Fixed protein localization query [none] 1106599 Fixed missing parent exoxyst [none] 1106987 Accepted new synomym for sphinganine kinase activity (GO 8481) [none] 1107849 Accepted missing parent clathrin adaptor complex [none] 1107865 Duplicate missing parent clathrin adaptor complex [none] 1107869 Accepted missing parent cortical actin cytoskeleton [none] 1108219 Works For Me ESCRT II complex [none] 1108394 Accepted H3-K79 methyltransferase activity GO:0031151 1108641 Accepted NAD binding GO:0051287 1108651 Accepted NADH binding GO:0051288 1108665 Accepted protein homotetramerization GO:0051289 1108694 Accepted protein homotetramerization GO:0051290-51291 1109186 Works For Me missing parent prereplicative complex [none] 1111084 Accepted ntr: phosphatidylinositol catabolism GO:0031161 1111826 Fixed GO:0040035 should be child of GO:0035112, not GO:0030538 [none] 750097 Fixed pombe sensu terms for polarized growth GO:0051285-51286 818626 Works For Me mRNA cleavage complexes query [none] 837124 Accepted 3' RNA processing GO:0031123-31126 877848 Accepted ribulose bisphosphate carboxylase complex [none] 896523 None receptor signaling protein activity and its children [none] 899655 None kidney development GO:0001822-01824 944051 Accepted induction and lateral inhibition GO:0031128-31131 948372 Accepted fixing cell differentiation terms [none] 949417 Fixed pseudouridine synthase confusion GO:0031118-31120 956691 Accepted hair/trichome formation GO:0035315-35320 965023 Accepted new terms requested by PAMGO GO:0042000 GO:0043298 GO:0044000-44011 GO:0044399-44419 Statistics: biological_process: 9383 terms, 96.4% defined (9047 terms defined) cellular_component: 1532 terms, 94.1% defined (1442 terms defined) molecular_function: 7459 terms, 89.9% defined (6705 terms defined) Total: 18374 terms, 93.6% defined (17194 terms defined) Term errors none