GO Monthly Release Notes for September 2004 ======================== Generated on Mon Jan 24 12:50:21 2005 Files used: gene_ontology.obo OLD: version 3.459, 31:08:2004 16:38 NEW: version 3.520, 30:09:2004 18:04 goslim_generic Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in component ontology (24 new terms) GO:0030981 GO:0005856 MAH D 993328 cortical microtubule cytoskeleton GO:0030988 GO:0005886 MAH D 1035336 high molecular weight kininogen receptor complex GO:0030990 GO:0005622 MAH D 1035336 intraflagellar transport particle GO:0030991 GO:0005622 MAH D 1035336 intraflagellar transport particle A GO:0030992 GO:0005622 MAH D 1035336 intraflagellar transport particle B GO:0030993 GO:0005622 MAH D 1035336 axonemal heterotrimeric kinesin-II complex GO:0030998 GO:0000228 MAH D 983486 linear element GO:0031002 GO:0005856 MAH D 1035336 actin rod GO:0031003 GO:0005856 MAH D 1035336 actin tubule GO:0031004 GO:0005886 MAH D 1035336 potassium ion-transporting ATPase complex GO:0031009 GO:0009536 MAH D 981422 plastid ADPG pyrophosphorylase complex GO:0031010 GO:0005654 MAH D 1035336 ISWI complex GO:0031011 GO:0005654 MAH D 1035336 INO80 complex GO:0031012 GO:0005575 MAH D 979319 extracellular matrix GO:0031015 GO:0005635 MAH D 945937 karyopherin docking complex GO:0031019 GO:0005737 MAH D 991827 mitochondrial mRNA editing complex GO:0031020 GO:0005737 MAH D 991827 plastid mRNA editing complex GO:0031021 GO:0005815 MAH D 930381 interphase microtubule organizing center GO:0035253 GO:0005856 FB D 1035336 ciliary rootlet GO:0005929 GO:0043209 GO:0005886 JL D 1035336 myelin sheath GO:0043218 GO:0005886 JL D 1035336 compact myelin GO:0043219 GO:0005886 JL D 1035336 lateral loop GO:0043220 GO:0005886 JL D 1035336 Schmidt-Lanterman cleft GO:0043222 GO:0005694 JL D 886220 SMC/kleisin ring complex Term name changes in component ontology GO:0000274: proton-transporting ATP synthase, stator stalk (sensu Eukarya) --> proton-transporting ATP synthase, stator stalk (sensu Eukaryota) GO:0000275: proton-transporting ATP synthase complex, catalytic core F(1) (sensu Eukarya) --> proton-transporting ATP synthase complex, catalytic core F(1) (sensu Eukaryota) GO:0000276: proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukarya) --> proton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota) GO:0000502: proteasome complex (sensu Eukarya) --> proteasome complex (sensu Eukaryota) GO:0000925: gamma-tubulin ring complex, centrosomal (sensu Animalia) --> gamma-tubulin ring complex, centrosomal (sensu Metazoa) GO:0000926: gamma-tubulin large complex (sensu Animalia) --> gamma-tubulin large complex (sensu Metazoa) GO:0000927: gamma-tubulin small complex (sensu Animalia) --> gamma-tubulin small complex (sensu Metazoa) GO:0005578: extracellular matrix --> extracellular matrix (sensu Metazoa) GO:0005747: respiratory chain complex I (sensu Eukarya) --> respiratory chain complex I (sensu Eukaryota) GO:0005749: respiratory chain complex II (sensu Eukarya) --> respiratory chain complex II (sensu Eukaryota) GO:0005750: respiratory chain complex III (sensu Eukarya) --> respiratory chain complex III (sensu Eukaryota) GO:0005751: respiratory chain complex IV (sensu Eukarya) --> respiratory chain complex IV (sensu Eukaryota) GO:0005753: proton-transporting ATP synthase complex (sensu Eukarya) --> proton-transporting ATP synthase complex (sensu Eukaryota) GO:0005754: proton-transporting ATP synthase, catalytic core (sensu Eukarya) --> proton-transporting ATP synthase, catalytic core (sensu Eukaryota) GO:0005756: proton-transporting ATP synthase, central stalk (sensu Eukarya) --> proton-transporting ATP synthase, central stalk (sensu Eukaryota) GO:0005830: cytosolic ribosome (sensu Eukarya) --> cytosolic ribosome (sensu Eukaryota) GO:0005838: proteasome regulatory particle (sensu Eukarya) --> proteasome regulatory particle (sensu Eukaryota) GO:0005839: proteasome core complex (sensu Eukarya) --> proteasome core complex (sensu Eukaryota) GO:0005842: cytosolic large ribosomal subunit (sensu Eukarya) --> cytosolic large ribosomal subunit (sensu Eukaryota) GO:0005843: cytosolic small ribosomal subunit (sensu Eukarya) --> cytosolic small ribosomal subunit (sensu Eukaryota) GO:0005947: alpha-ketoglutarate dehydrogenase complex (sensu Eukarya) --> alpha-ketoglutarate dehydrogenase complex (sensu Eukaryota) GO:0005962: isocitrate dehydrogenase complex (NAD+) (sensu Eukarya) --> isocitrate dehydrogenase complex (NAD+) (sensu Eukaryota) GO:0005967: pyruvate dehydrogenase complex (sensu Eukarya) --> pyruvate dehydrogenase complex (sensu Eukaryota) GO:0008540: proteasome regulatory particle, base subcomplex (sensu Eukarya) --> proteasome regulatory particle, base subcomplex (sensu Eukaryota) GO:0008541: proteasome regulatory particle, lid subcomplex (sensu Eukarya) --> proteasome regulatory particle, lid subcomplex (sensu Eukaryota) GO:0009353: oxoglutarate dehydrogenase complex (sensu Eukarya) --> oxoglutarate dehydrogenase complex (sensu Eukaryota) GO:0009434: flagellum (sensu Eukarya) --> flagellum (sensu Eukaryota) GO:0015008: ubiquinol-cytochrome-c reductase complex (sensu Eukarya) --> ubiquinol-cytochrome-c reductase complex (sensu Eukaryota) GO:0016587: ISWI1 complex --> ISW1 complex GO:0016588: ISWI2 complex --> ISW2 complex GO:0017133: electron transfer flavoprotein complex (sensu Eukarya) --> electron transfer flavoprotein complex (sensu Eukaryota) GO:0019773: proteasome core complex, alpha-subunit complex (sensu Eukarya) --> proteasome core complex, alpha-subunit complex (sensu Eukaryota) GO:0019774: proteasome core complex, beta-subunit complex (sensu Eukarya) --> proteasome core complex, beta-subunit complex (sensu Eukaryota) GO:0019910: pyruvate dehydrogenase (lipoamide) phosphatase complex (sensu Eukarya) --> pyruvate dehydrogenase (lipoamide) phosphatase complex (sensu Eukaryota) GO:0030062: tricarboxylic acid cycle enzyme complex (sensu Eukarya) --> tricarboxylic acid cycle enzyme complex (sensu Eukaryota) GO:0030479: actin cortical patch (sensu Fungi) --> actin cortical patch GO:0042652: respiratory chain complex I, peripheral segment (sensu Eukarya) --> respiratory chain complex I, peripheral segment (sensu Eukaryota) GO:0042653: respiratory chain complex I, membrane segment (sensu Eukarya) --> respiratory chain complex I, membrane segment (sensu Eukaryota) GO:0043080: female germ cell nucleus (sensu Animalia) --> female germ cell nucleus (sensu Metazoa) GO:0043081: male germ cell nucleus (sensu Animalia) --> male germ cell nucleus (sensu Metazoa) GO:0043191: ATP-binding cassette (ABC) transporter complex (sensu Eukarya) --> ATP-binding cassette (ABC) transporter complex (sensu Eukaryota) New definitions for component ontology terms (9 new definitions) GO:0005677, chromatin silencing complex GO:0005678, chromatin assembly complex GO:0005847, mRNA cleavage and polyadenylation specificity factor complex GO:0005904, lipid bilayer GO:0016514, SWI/SNF complex GO:0016585, chromatin remodeling complex GO:0016586, RSC complex GO:0016587, ISW1 complex GO:0016588, ISW2 complex New term merges in component ontology GO:0000134 has been merged into GO:0030483, site of polarized growth (sensu Fungi) GO:0005679 has been merged into GO:0016585, chromatin remodeling complex Term movements in component ontology: Terms movements under GO Slim term 'extracellular matrix (sensu Metazoa) ; GO:0005578' - GO:0009530, primary cell wall - GO:0009531, secondary cell wall - GO:0048196, extracellular matrix (sensu Magnoliophyta) - GO:0048217, pectic matrix - GO:0048222, glycoprotein network - GO:0048223, hemicellulose network - GO:0048224, lignin network - GO:0048225, suberin network - GO:0048226, Casparian strip Terms movements under GO Slim term 'chromosome ; GO:0005694' - GO:0005828, kinetochore microtubule Terms movements under GO Slim term 'cytoplasm ; GO:0005737' + GO:0030931, ADPG pyrophosphorylase complex (sensu Eukaryota) + GO:0045293, mRNA editing complex Terms movements under GO Slim term 'mitochondrion ; GO:0005739' - GO:0045293, mRNA editing complex Terms movements under GO Slim term 'plastid ; GO:0009536' - GO:0030931, ADPG pyrophosphorylase complex (sensu Eukaryota) - GO:0045293, mRNA editing complex New terms in function ontology (30 new terms) GO:0001888 GO:0016740 MGI D 1035336 glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity GO:0030983 GO:0003677 MAH D 1035336 mismatched DNA binding GO:0030984 GO:0005515 MAH D 1035336 kininogen binding GO:0030985 GO:0005515 MAH D 1035336 high molecular weight kininogen binding GO:0030986 GO:0005515 MAH D 1035336 low molecular weight kininogen binding GO:0030987 GO:0005102 MAH D 1035336 high molecular weight kininogen receptor binding GO:0031005 GO:0008092 MAH D 1035336 filamin binding GO:0031006 GO:0008092 MAH D 1035336 filamin-A binding GO:0031007 GO:0008092 MAH D 1035336 filamin-B binding GO:0031008 GO:0008092 MAH D 1035336 filamin-C binding GO:0031013 GO:0008092 MAH D 1035336 troponin I binding GO:0031014 GO:0008092 MAH D 1035336 troponin T binding GO:0035240 GO:0005488 FB D 1035336 dopamine binding GO:0035241 GO:0016740 FB D 1035336 protein-arginine omega-N monomethyltransferase activity GO:0035242 GO:0016740 FB D 1035336 protein-arginine omega-N asymmetric methyltransferase activity GO:0035243 GO:0016740 FB D 1035336 protein-arginine omega-N symmetric methyltransferase activity GO:0035244 GO:0016740 FB D 1035336 peptidyl-arginine C-methyltransferase activity GO:0035248 GO:0016740 FB D 1035336 alpha-1,4-N-acetylgalactosaminyltransferase activity GO:0035250 GO:0016740 FB D 984127 UDP-galactosyltransferase activity GO:0035251 GO:0016740 FB D 984127 UDP-glucosyltransferase activity GO:0035252 GO:0016740 FB D 984127 UDP-xylosyltransferase activity GO:0043208 GO:0008289 JL D 1035336 glycosphingolipid binding GO:0043210 GO:0005488 JL D 1035336 alkanesulfonate binding GO:0043211 GO:0005215 JL D 1035336 carbohydrate-transporting ATPase activity GO:0016787 GO:0043212 GO:0005215 JL D 1035336 carbohydrate-exporting ATPase activity GO:0016787 GO:0043214 GO:0005215 JL D 1035336 bacteriocin-transporting ATPase activity GO:0016787 GO:0043216 GO:0005215 JL D 1035336 daunorubicin-transporting ATPase activity GO:0016787 GO:0043221 GO:0005515 JL D 886220 SMC protein binding GO:0051119 GO:0005215 AI D 1035336 sugar transporter activity GO:0051139 GO:0005215 AI D 1035336 metal ion:hydrogen antiporter activity New obsoletions in function ontology GO:0005281, general amino acid permease activity: represents a gene product. GO:0015253, sugar/polyol channel activity: represents two molecular functions. GO:0015263, amine/amide/polyamine channel activity: represents three molecular functions. GO:0015348, prostaglandin/thromboxane transporter activity: represents a multifunctional gene product. GO:0015507, hydroxy/aromatic amino acid permease activity: is a redundant grouping term. GO:0015524, L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity: represents a gene product rather than a single discrete molecular function. GO:0015525, carbonyl cyanide m-chlorophenylhydrazone/nalidixic acid/organomercurials:hydrogen antiporter activity: represents a multifunctional gene product. GO:0015617, pilin/fimbrilin exporter activity: represents a gene product. Term name changes in function ontology GO:0000254: C-4 methyl sterol oxidase activity --> C-4 methylsterol oxidase activity GO:0004394: heparin-sulfate 2-sulfotransferase activity --> heparan sulfate 2-O-sulfotransferase activity GO:0004663: RAB-protein geranylgeranyltransferase activity --> Rab-protein geranylgeranyltransferase activity GO:0004787: thiamin pyrophosphatase activity --> thiamin-pyrophosphatase activity GO:0008564: protein-secreting ATPase activity --> protein-exporting ATPase activity GO:0015608: carbohydrate uptake transporter activity --> carbohydrate-importing ATPase activity GO:0018559: 1,1-dichloro-2-(dihydroxy-4-chlorophenyl)-(4-chlorophenyl)ethylene 1,2-dioxygenase activity --> 1,1-dichloro-2-(dihydroxy-4-chlorophenyl)-(4-chlorophenyl)ethene 1,2-dioxygenase activity GO:0018702: 1,1-dichloro-2,2-bis(4'-chlorophenyl)ethylene dehalogenase activity --> 1,1-dichloro-2,2-bis(4'-chlorophenyl)ethene dehalogenase activity GO:0045134: uridine diphosphatase activity --> uridine-diphosphatase activity GO:0047046: 3-carboxy-2-hydroxyadipate dehydrogenase activity --> homoisocitrate dehydrogenase activity GO:0050697: 1,1,2-trichloroethylene reductive dehalogenase activity --> 1,1,2-trichloroethene reductive dehalogenase activity New definitions for function ontology terms (30 new definitions) GO:0003913, DNA photolyase activity GO:0003914, DNA (6-4) photolyase activity GO:0004086, carbamoyl-phosphate synthase activity GO:0004154, dihydropterin oxidase activity GO:0004162, dimethylnitrosamine demethylase activity GO:0004298, threonine endopeptidase activity GO:0004394, heparan sulfate 2-O-sulfotransferase activity GO:0004660, protein farnesyltransferase activity GO:0004661, protein geranylgeranyltransferase activity GO:0004662, CAAX-protein geranylgeranyltransferase activity GO:0004663, Rab-protein geranylgeranyltransferase activity GO:0004673, protein-histidine kinase activity GO:0004787, thiamin-pyrophosphatase activity GO:0005281, general amino acid permease activity GO:0008194, UDP-glycosyltransferase activity GO:0008266, poly(U) binding GO:0015253, sugar/polyol channel activity GO:0015263, amine/amide/polyamine channel activity GO:0015348, prostaglandin/thromboxane transporter activity GO:0015355, monocarboxylate porter activity GO:0015507, hydroxy/aromatic amino acid permease activity GO:0015525, carbonyl cyanide m-chlorophenylhydrazone/nalidixic acid/organomercurials:hydrogen antiporter activity GO:0015617, pilin/fimbrilin exporter activity GO:0016997, alpha-sialidase activity GO:0017051, retinol dehydratase activity GO:0017091, AU-specific RNA binding GO:0017095, heparan sulfate 6-O-sulfotransferase activity GO:0017130, poly(rC) binding GO:0018271, biotin-protein ligase activity GO:0042284, sphingolipid delta-4 desaturase activity New term merges in function ontology GO:0000106 has been merged into GO:0018271, biotin-protein ligase activity GO:0000251 has been merged into GO:0050613, delta14-sterol reductase activity GO:0004279 has been merged into GO:0004293, tissue kallikrein activity GO:0004393 has been merged into GO:0015016, [heparan sulfate]-glucosamine N-sulfotransferase activity GO:0009387 has been merged into GO:0003916, DNA topoisomerase activity GO:0018223 has been merged into GO:0004660, protein farnesyltransferase activity GO:0018224 has been merged into GO:0004661, protein geranylgeranyltransferase activity GO:0047984 has been merged into GO:0047046, homoisocitrate dehydrogenase activity Term movements in function ontology: Terms movements under GO Slim term 'DNA binding ; GO:0003677' + GO:0003916, DNA topoisomerase activity + GO:0003917, DNA topoisomerase type I activity + GO:0003918, DNA topoisomerase (ATP-hydrolyzing) activity Terms movements under GO Slim term 'transporter activity ; GO:0005215' + GO:0015254, glycerol channel activity + GO:0015255, propanediol channel activity + GO:0015264, methylammonium channel activity + GO:0015265, urea channel activity Terms movements under GO Slim term 'ion channel activity ; GO:0005216' - GO:0015254, glycerol channel activity - GO:0015255, propanediol channel activity - GO:0015264, methylammonium channel activity - GO:0015265, urea channel activity Terms movements under GO Slim term 'binding ; GO:0005488' + GO:0001588, dopamine D1 receptor-like receptor activity + GO:0001589, dopamine D5 receptor activity + GO:0001590, dopamine D1 receptor activity + GO:0001591, dopamine D2 receptor-like receptor activity + GO:0001592, dopamine D3 receptor activity + GO:0001593, dopamine D4 receptor activity + GO:0001670, dopamine D2 receptor activity + GO:0004952, dopamine receptor activity New terms in process ontology (80 new terms) GO:0001887 GO:0008152 MGI D 1035336 selenium metabolism GO:0030978 GO:0005975 MAH D 1035336 alpha-glucan metabolism GO:0030979 GO:0005975 MAH D 1035336 alpha-glucan biosynthesis GO:0009058 GO:0030980 GO:0005975 MAH D 1035336 alpha-glucan catabolism GO:0009056 GO:0030982 GO:0007582 MAH D 1035336 adventurous gliding motility GO:0030989 GO:0007010 MAH D 1035336 horsetail movement GO:0007049 GO:0030994 GO:0008283 MAH D 979621 primary septum hydrolysis GO:0030995 GO:0008283 MAH D 979621 septum edging hydrolysis GO:0030996 GO:0007049 MAH D 981127 cell cycle arrest in response to nitrogen starvation GO:0030997 GO:0007010 MAH D 931157 regulation of centriole-centriole cohesion GO:0007049 GO:0030999 GO:0007049 MAH D 983486 linear element formation GO:0031000 GO:0009628 MAH D 1035336 response to caffeine GO:0031001 GO:0009628 MAH D 1035336 response to brefeldin A GO:0031016 GO:0009653 MAH D 1035752 pancreas development GO:0031017 GO:0009653 MAH D 1035752 exocrine pancreas development GO:0031018 GO:0009653 MAH D 1035752 endocrine pancreas development GO:0035238 GO:0009058 FB D 1035336 vitamin A biosynthesis GO:0035239 GO:0009653 FB D 939379 tube morphogenesis GO:0035245 GO:0006464 FB D 1035336 peptidyl-arginine C-methylation GO:0035246 GO:0006464 FB D 1035336 peptidyl-arginine N-methylation GO:0035247 GO:0006464 FB D 1035336 peptidyl-arginine omega-N-methylation GO:0035249 GO:0007267 FB D 1035336 synaptic transmission, glutamatergic GO:0007582 GO:0043207 GO:0009605 JL D 991824 response to external biotic stimulus GO:0009607 GO:0043213 GO:0015031 JL D 1035336 bacteriocin transport GO:0043215 GO:0006810 JL D 1035336 daunorubicin transport GO:0009628 GO:0043217 GO:0009653 JL D 1035336 myelin maintenance GO:0030154 GO:0048504 GO:0009653 JIC D 975438 regulation of timing of organ formation GO:0048505 GO:0030154 JIC D 975438 regulation of timing of cell differentiation GO:0048506 GO:0007275 JIC D 975438 regulation of timing of meristematic phase transition GO:0048507 GO:0007275 JIC D 975438 meristem development GO:0048508 GO:0009790 JIC D 975438 embryonic meristem development GO:0048509 GO:0007275 JIC D 975438 regulation of meristem development GO:0048510 GO:0007275 JIC D 975438 regulation of timing of transition to inflorescence phase GO:0051123 GO:0006350 AI D 1035336 transcriptional preinitiation complex formation GO:0051124 GO:0007582 AI D 1035336 synaptic growth at neuromuscular junction GO:0009653 GO:0051125 GO:0007010 AI D 1035336 regulation of actin nucleation GO:0051126 GO:0007010 AI D 1035336 negative regulation of actin nucleation GO:0051127 GO:0007010 AI D 1035336 positive regulation of actin nucleation GO:0051128 GO:0016043 AI D 1035336 regulation of cell organization and biogenesis GO:0051129 GO:0016043 AI D 1035336 negative regulation of cell organization and biogenesis GO:0051130 GO:0016043 AI D 1035336 positive regulation of cell organization and biogenesis GO:0051131 GO:0019538 AI D 1035336 chaperone-mediated protein complex assembly GO:0051132 GO:0009607 AI D 956939 NK T-cell activation GO:0051133 GO:0009607 AI D 956939 regulation of NK T-cell activation GO:0051134 GO:0009607 AI D 956939 negative regulation of NK T-cell activation GO:0051135 GO:0009607 AI D 956939 positive regulation of NK T-cell activation GO:0051136 GO:0009607 AI D 956939 regulation of NK T-cell differentiation GO:0009653 GO:0030154 GO:0051137 GO:0009607 AI D 956939 negative regulation of NK T-cell differentiation GO:0009653 GO:0030154 GO:0051138 GO:0009607 AI D 956939 positive regulation of NK T-cell differentiation GO:0009653 GO:0030154 GO:0051140 GO:0008283 AI D 956939 regulation of NK T-cell proliferation GO:0009607 GO:0051141 GO:0008283 AI D 956939 negative regulation of NK T-cell proliferation GO:0009607 GO:0051142 GO:0008283 AI D 956939 positive regulation of NK T-cell proliferation GO:0009607 GO:0051143 GO:0008152 AI D 991981 propanediol metabolism GO:0051144 GO:0008152 AI D 991981 propanediol catabolism GO:0051145 GO:0030154 AI D 1035336 smooth muscle cell differentiation GO:0051146 GO:0030154 AI D 1035336 striated muscle cell differentiation GO:0051147 GO:0030154 AI D 1035336 regulation of muscle cell differentiation GO:0051148 GO:0030154 AI D 1035336 negative regulation of muscle cell differentiation GO:0051149 GO:0030154 AI D 1035336 positive regulation of muscle cell differentiation GO:0051150 GO:0030154 AI D 1035336 regulation of smooth muscle cell differentiation GO:0051151 GO:0030154 AI D 1035336 negative regulation of smooth muscle cell differentiation GO:0051152 GO:0030154 AI D 1035336 positive regulation of smooth muscle cell differentiation GO:0051153 GO:0030154 AI D 1035336 regulation of striated muscle cell differentiation GO:0051154 GO:0030154 AI D 1035336 negative regulation of striated muscle cell differentiation GO:0051155 GO:0030154 AI D 1035336 positive regulation of striated muscle cell differentiation GO:0051156 GO:0005975 AI D 1035336 glucose 6-phosphate metabolism GO:0051157 GO:0005975 AI D 1035336 arabitol catabolism GO:0009056 GO:0051158 GO:0005975 AI D 1035336 L-arabitol catabolism GO:0009056 GO:0051159 GO:0005975 AI D 1035336 D-arabitol catabolism GO:0009056 GO:0051160 GO:0005975 AI D 1035336 L-xylitol catabolism GO:0009056 GO:0051161 GO:0005975 AI D 1035336 arabitol metabolism GO:0051162 GO:0005975 AI D 1035336 L-arabitol metabolism GO:0051163 GO:0005975 AI D 1035336 D-arabitol metabolism GO:0051164 GO:0005975 AI D 1035336 L-xylitol metabolism GO:0051165 GO:0008152 AI D 1035336 2,5-dihydroxypyridine metabolism GO:0051166 GO:0009056 AI D 1035336 2,5-dihydroxypyridine catabolism GO:0051167 GO:0005975 AI D 1035336 xylulose 5-phosphate metabolism GO:0051168 GO:0006810 AI D 1035336 nuclear export GO:0051169 GO:0006810 AI D 1035336 nuclear transport GO:0051170 GO:0006810 AI D 1035336 nuclear import New obsoletions in process ontology GO:0006130, 6-phosphofructokinase reduction: the term string was ambiguous and the term may represent a molecular function. GO:0006840, mitochondrial alpha-ketoglutarate/malate transport: represents a function rather than a process. GO:0006845, mitochondrial aspartate/glutamate transport: represents a function rather than a process. GO:0006852, mitochondrial sodium/calcium ion exchange: represents function rather than a process. GO:0007353, ventral/lateral system: does not describe a biological process. GO:0007401, pan-neural process: its meaning is ambiguous. GO:0009844, germination: is a grouping term without biological significance. GO:0030180, solute:solute exchange: represents a molecular function. GO:0030181, sodium:calcium exchange: represents a function rather than a process. GO:0030470, spore germination (sensu Fungi): a sensu term was not needed. Term name changes in process ontology GO:0000184: mRNA catabolism, nonsense-mediated --> mRNA catabolism, nonsense-mediated decay GO:0000288: mRNA catabolism, deadenylylation-dependent --> mRNA catabolism, deadenylylation-dependent decay GO:0000294: mRNA catabolism, endonucleolytic --> mRNA catabolism, endonucleolytic cleavage-dependent decay GO:0006309: DNA fragmentation --> DNA fragmentation during apoptosis GO:0006613: cotranslational membrane targeting --> cotranslational protein-membrane targeting GO:0006614: SRP-dependent cotranslational membrane targeting --> SRP-dependent cotranslational protein-membrane targeting GO:0006615: SRP-dependent cotranslational membrane targeting, docking --> SRP-dependent cotranslational protein-membrane targeting, docking GO:0006616: SRP-dependent cotranslational membrane targeting, translocation --> SRP-dependent cotranslational protein-membrane targeting, translocation GO:0006617: SRP-dependent cotranslational membrane targeting, signal sequence recognition --> SRP-dependent cotranslational protein-membrane targeting, signal sequence recognition GO:0006618: SRP-dependent cotranslational membrane targeting, signal sequence processing --> SRP-dependent cotranslational protein-membrane targeting, signal sequence processing GO:0006619: SRP-independent cotranslational membrane targeting --> SRP-independent cotranslational protein-membrane targeting GO:0006620: posttranslational membrane targeting --> posttranslational protein-membrane targeting GO:0006627: mitochondrial processing --> mitochondrial protein processing GO:0007001: chromosome organization and biogenesis (sensu Eukarya) --> chromosome organization and biogenesis (sensu Eukaryota) GO:0007053: male meiotic spindle assembly (sensu Animalia) --> male meiotic spindle assembly (sensu Metazoa) GO:0007054: male meiosis I spindle assembly (sensu Animalia) --> male meiosis I spindle assembly (sensu Metazoa) GO:0007055: male meiosis II spindle assembly (sensu Animalia) --> male meiosis II spindle assembly (sensu Metazoa) GO:0007056: female meiotic spindle assembly (sensu Animalia) --> female meiotic spindle assembly (sensu Metazoa) GO:0007057: female meiosis I spindle assembly (sensu Animalia) --> female meiosis I spindle assembly (sensu Metazoa) GO:0007058: female meiosis II spindle assembly (sensu Animalia) --> female meiosis II spindle assembly (sensu Metazoa) GO:0007338: fertilization (sensu Animalia) --> fertilization (sensu Metazoa) GO:0007480: leg morphogenesis (sensu Holometabola) --> leg morphogenesis (sensu Endopterygota) GO:0007484: genital morphogenesis (sensu Holometabola) --> genital morphogenesis (sensu Endopterygota) GO:0007485: male genital morphogenesis (sensu Holometabola) --> male genital morphogenesis (sensu Endopterygota) GO:0007486: female genital morphogenesis (sensu Holometabola) --> female genital morphogenesis (sensu Endopterygota) GO:0007487: analia morphogenesis (sensu Holometabola) --> analia morphogenesis (sensu Endopterygota) GO:0009792: embryonic development (sensu Animalia) --> embryonic development (sensu Metazoa) GO:0009796: cellularization (sensu Animalia) --> cellularization (sensu Metazoa) GO:0016081: synaptic vesicle docking --> synaptic vesicle docking during exocytosis GO:0016348: leg joint morphogenesis (sensu Holometabola) --> leg joint morphogenesis (sensu Endopterygota) GO:0017145: stem cell renewal --> stem cell division GO:0018181: peptidyl-arginine 5-methylation --> peptidyl-arginine C5-methylation GO:0019427: acetate utilization --> acetyl-CoA biosynthesis from acetate GO:0019488: ribitol utilization --> ribitol catabolism to xylulose 5-phosphate GO:0019508: 2,5-dihydroxypyridine utilization --> 2,5-dihydroxypyridine catabolism to fumarate GO:0019528: D-arabitol utilization --> D-arabitol catabolism to xylulose 5-phosphate GO:0019590: L-arabitol utilization --> L-arabitol catabolism to xylulose 5-phosphate GO:0019640: glucuronate catabolism to xylulose-5-phosphate --> glucuronate catabolism to xylulose 5-phosphate GO:0019697: L-xylitol utilization --> L-xylitol catabolism to xylulose 5-phosphate GO:0019701: peptidyl-arginine delta-N-methylation --> peptidyl-arginine N5-methylation GO:0019919: peptidyl-arginine methylation, to unsymmetrical-dimethyl arginine --> peptidyl-arginine methylation, to asymmetrical-dimethyl arginine GO:0035109: limb morphogenesis (sensu Holometabola) --> limb morphogenesis (sensu Endopterygota) GO:0035114: appendage morphogenesis (sensu Holometabola) --> appendage morphogenesis (sensu Endopterygota) GO:0042078: germ-line stem cell renewal --> germ-line stem cell division GO:0042775: ATP synthesis coupled electron transport (sensu Eukarya) --> ATP synthesis coupled electron transport (sensu Eukaryota) GO:0042776: ATP synthesis coupled proton transport (sensu Eukarya) --> ATP synthesis coupled proton transport (sensu Eukaryota) GO:0045319: SRP-independent cotranslational membrane targeting, translocation --> SRP-independent cotranslational protein-membrane targeting, translocation GO:0045496: male analia morphogenesis (sensu Holometabola) --> male analia morphogenesis (sensu Endopterygota) GO:0045497: female analia morphogenesis (sensu Holometabola) --> female analia morphogenesis (sensu Endopterygota) GO:0048103: somatic stem cell renewal --> somatic stem cell division GO:0048211: Golgi vesicle docking with target membrane --> Golgi vesicle docking GO:0048212: Golgi vesicle coat depolymerization --> Golgi vesicle uncoating New definitions for process ontology terms (18 new definitions) GO:0006130, 6-phosphofructokinase reduction GO:0006422, aspartyl-tRNA aminoacylation GO:0006433, prolyl-tRNA aminoacylation GO:0006852, mitochondrial sodium/calcium ion exchange GO:0007271, synaptic transmission, cholinergic GO:0007353, ventral/lateral system GO:0007401, pan-neural process GO:0009399, nitrogen fixation GO:0018321, protein amino acid glucuronylation GO:0019427, acetyl-CoA biosynthesis from acetate GO:0019488, ribitol catabolism to xylulose 5-phosphate GO:0019508, 2,5-dihydroxypyridine catabolism to fumarate GO:0019528, D-arabitol catabolism to xylulose 5-phosphate GO:0019590, L-arabitol catabolism to xylulose 5-phosphate GO:0019697, L-xylitol catabolism to xylulose 5-phosphate GO:0019749, cytoskeleton-dependent cytoplasmic transport, nurse cell to oocyte GO:0030972, cleavage of cytosolic proteins during apoptosis GO:0042078, germ-line stem cell division New term merges in process ontology GO:0048131 has been merged into GO:0042078, germ-line stem cell division Term movements in process ontology: Terms movements under GO Slim term 'reproduction ; GO:0000003' + GO:0042078, germ-line stem cell division Terms movements under GO Slim term 'carbohydrate metabolism ; GO:0005975' + GO:0019640, glucuronate catabolism to xylulose 5-phosphate Terms movements under GO Slim term 'DNA metabolism ; GO:0006259' - GO:0009290, cellular DNA uptake Terms movements under GO Slim term 'protein modification ; GO:0006464' - GO:0000079, regulation of cyclin dependent protein kinase activity - GO:0000167, activation of MAPKKK during osmolarity sensing - GO:0000168, activation of MAPKK during osmolarity sensing - GO:0000169, activation of MAPK during osmolarity sensing - GO:0000185, activation of MAPKKK - GO:0000186, activation of MAPKK - GO:0000187, activation of MAPK - GO:0000197, activation of MAPKKK during cell wall biogenesis - GO:0000198, activation of MAPKK during cell wall biogenesis - GO:0000199, activation of MAPK during cell wall biogenesis - GO:0006469, negative regulation of protein kinase activity + GO:0006624, vacuolar protein processing or maturation - GO:0007233, activation of Pbs2 kinase - GO:0007250, activation of NF-kappaB-inducing kinase - GO:0007256, activation of JUNKK - GO:0007257, activation of JUNK - GO:0042655, activation of JUNKKK - GO:0042976, activation of JAK protein - GO:0042977, tyrosine phosphorylation of JAK2 protein - GO:0045736, negative regulation of cyclin dependent protein kinase activity - GO:0045737, positive regulation of cyclin dependent protein kinase activity - GO:0045859, regulation of protein kinase activity - GO:0045860, positive regulation of protein kinase activity Terms movements under GO Slim term 'coenzyme and prosthetic group metabolism ; GO:0006731' + GO:0019427, acetyl-CoA biosynthesis from acetate Terms movements under GO Slim term 'transport ; GO:0006810' + GO:0009290, cellular DNA uptake + GO:0045479, vesicle-fusome targeting Terms movements under GO Slim term 'cell communication ; GO:0007154' + GO:0045013, negative regulation of transcription by carbon catabolites + GO:0045014, negative regulation of transcription by glucose + GO:0045990, regulation of transcription by carbon catabolites + GO:0045991, positive regulation of transcription by carbon catabolites + GO:0046015, regulation of transcription by glucose + GO:0046016, positive regulation of transcription by glucose Terms movements under GO Slim term 'development ; GO:0007275' + GO:0009845, seed germination + GO:0010029, regulation of seed germination + GO:0010030, positive regulation of seed germination + GO:0010187, negative regulation of seed germination + GO:0040034, regulation of development, heterochronic Terms movements under GO Slim term 'physiological process ; GO:0007582' + GO:0008582, regulation of synaptic growth at neuromuscular junction + GO:0042062, long-term strengthening of neuromuscular junction + GO:0045886, negative regulation of synaptic growth at neuromuscular junction + GO:0045887, positive regulation of synaptic growth at neuromuscular junction Terms movements under GO Slim term 'biological_process ; GO:0008150' + GO:0006469, negative regulation of protein kinase activity + GO:0045859, regulation of protein kinase activity + GO:0045860, positive regulation of protein kinase activity Terms movements under GO Slim term 'metabolism ; GO:0008152' - GO:0019427, acetyl-CoA biosynthesis from acetate - GO:0019508, 2,5-dihydroxypyridine catabolism to fumarate - GO:0042904, 9-cis-retinoic acid biosynthesis - GO:0048097, long-term maintenance of gene activation Terms movements under GO Slim term 'catabolism ; GO:0009056' + GO:0019488, ribitol catabolism to xylulose 5-phosphate + GO:0019508, 2,5-dihydroxypyridine catabolism to fumarate - GO:0046356, acetyl-CoA catabolism Terms movements under GO Slim term 'biosynthesis ; GO:0009058' - GO:0006085, acetyl-CoA biosynthesis - GO:0006086, acetyl-CoA biosynthesis from pyruvate - GO:0019431, acetyl-CoA biosynthesis from ethanol - GO:0030634, carbon fixation by acetyl-CoA pathway + GO:0042904, 9-cis-retinoic acid biosynthesis Terms movements under GO Slim term 'response to external stimulus ; GO:0009605' + GO:0001562, response to protozoa + GO:0001867, complement activation, lectin pathway + GO:0001868, regulation of complement activation, lectin pathway + GO:0001869, negative regulation of complement activation, lectin pathway + GO:0001870, positive regulation of complement activation, lectin pathway + GO:0001878, response to yeast + GO:0006953, acute-phase response + GO:0006956, complement activation + GO:0006957, complement activation, alternative pathway + GO:0006958, complement activation, classical pathway + GO:0006959, humoral immune response + GO:0006960, antimicrobial humoral response (sensu Protostomia) + GO:0006961, antibacterial humoral response (sensu Protostomia) + GO:0006962, male-specific antibacterial humoral response + GO:0006963, antibacterial polypeptide induction + GO:0006964, anti-Gram-negative bacterial polypeptide induction + GO:0006965, anti-Gram-positive bacterial polypeptide induction + GO:0006966, antifungal humoral response (sensu Protostomia) + GO:0006967, antifungal polypeptide induction + GO:0008348, attenuation of antimicrobial humoral response + GO:0009271, phage shock + GO:0009608, response to symbiont + GO:0009609, response to symbiotic bacteria + GO:0009610, response to symbiotic fungi + GO:0009613, response to pest, pathogen or parasite + GO:0009615, response to virus + GO:0009616, virus induced gene silencing + GO:0009617, response to bacteria + GO:0009618, response to pathogenic bacteria + GO:0009620, response to fungi + GO:0009621, response to pathogenic fungi + GO:0009623, response to parasitic fungi + GO:0009624, response to nematodes + GO:0009625, response to insect + GO:0009626, hypersensitive response + GO:0009627, systemic acquired resistance + GO:0009680, response to non-pathogenic bacteria + GO:0009682, induced systemic resistance + GO:0009689, induction of phytoalexin biosynthesis + GO:0009700, indole phytoalexin biosynthesis + GO:0009701, isoflavonoid phytoalexin biosynthesis + GO:0009814, defense response to pathogen, incompatible interaction + GO:0009816, defense response to pathogenic bacteria, incompatible interaction + GO:0009817, defense response to pathogenic fungi, incompatible interaction + GO:0009818, defense response to pathogenic protozoa, incompatible interaction + GO:0009862, systemic acquired resistance, salicylic acid mediated signaling pathway + GO:0009866, induced systemic resistance, ethylene mediated signaling pathway + GO:0010112, regulation of systemic acquired resistance + GO:0010113, negative regulation of systemic acquired resistance + GO:0010120, camalexin biosynthesis + GO:0016064, humoral defense mechanism (sensu Vertebrata) + GO:0016065, humoral defense mechanism (sensu Protostomia) + GO:0019052, negative regulation of intracellular antiviral response by virus + GO:0019053, negative regulation of extracellular antiviral response by virus + GO:0019724, B-cell mediated immunity + GO:0019730, antimicrobial humoral response + GO:0019731, antibacterial humoral response + GO:0019732, antifungal humoral response + GO:0019733, antibacterial humoral response (sensu Vertebrata) + GO:0019734, antifungal humoral response (sensu Vertebrata) + GO:0019735, antimicrobial humoral response (sensu Vertebrata) + GO:0030102, negative regulation of natural killer cell activity + GO:0030449, regulation of complement activation + GO:0030450, regulation of complement activation, classical pathway + GO:0030451, regulation of complement activation, alternative pathway + GO:0035010, encapsulation of foreign target + GO:0035011, melanotic encapsulation of foreign target + GO:0042092, T-helper 2 type immune response + GO:0042097, interleukin-4 biosynthesis + GO:0042154, attenuation of antimicrobial humoral response (sensu Protostomia) + GO:0042155, attenuation of antimicrobial humoral response (sensu Vertebrata) + GO:0042381, hemolymph coagulation + GO:0042594, response to starvation + GO:0042595, behavioral response to starvation + GO:0042742, defense response to bacteria + GO:0042828, response to pathogen + GO:0042829, defense response to pathogen + GO:0042830, defense response to pathogenic bacteria + GO:0042831, defense response to pathogenic fungi + GO:0042832, defense response to pathogenic protozoa + GO:0042833, response to pathogenic protozoa + GO:0043019, response to pathogenic insects + GO:0043152, induction of bacterial agglutination + GO:0045402, regulation of interleukin-4 biosynthesis + GO:0045403, negative regulation of interleukin-4 biosynthesis + GO:0045404, positive regulation of interleukin-4 biosynthesis + GO:0045845, regulation of natural killer cell activity + GO:0045846, positive regulation of natural killer cell activity + GO:0045916, negative regulation of complement activation + GO:0045917, positive regulation of complement activation + GO:0045957, negative regulation of complement activation, alternative pathway + GO:0045958, positive regulation of complement activation, alternative pathway + GO:0045959, negative regulation of complement activation, classical pathway + GO:0045960, positive regulation of complement activation, classical pathway + GO:0046774, viral inhibition of intracellular interferon activity + GO:0046775, viral inhibition of host cytokine production + GO:0046776, viral inhibition of MHC class I cell surface presentation + GO:0046791, viral inhibition of host complement neutralization + GO:0048305, immunoglobulin secretion + GO:0050687, negative regulation of antiviral response + GO:0050688, regulation of antiviral response + GO:0050689, negative regulation of antiviral response by host + GO:0050690, regulation of antiviral response by virus + GO:0050691, regulation of antiviral response by host + GO:0050829, defense response to Gram-negative bacteria + GO:0050830, defense response to Gram-positive bacteria + GO:0050831, male-specific defense response to bacteria + GO:0050832, defense response to fungi + GO:0051023, regulation of immunoglobulin secretion + GO:0051024, positive regulation of immunoglobulin secretion + GO:0051025, negative regulation of immunoglobulin secretion Terms movements under GO Slim term 'response to biotic stimulus ; GO:0009607' - GO:0006995, cellular response to nitrogen starvation - GO:0009267, cellular response to starvation - GO:0009970, cellular response to sulfate starvation - GO:0010106, cellular response to iron ion starvation - GO:0015968, stringent response - GO:0016036, cellular response to phosphate starvation - GO:0030583, fruiting body formation (sensu Bacteria) - GO:0030587, fruiting body formation (sensu Dictyosteliida) - GO:0042149, cellular response to glucose starvation - GO:0042594, response to starvation - GO:0042595, behavioral response to starvation Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628' + GO:0045013, negative regulation of transcription by carbon catabolites + GO:0045014, negative regulation of transcription by glucose + GO:0045990, regulation of transcription by carbon catabolites + GO:0045991, positive regulation of transcription by carbon catabolites + GO:0046015, regulation of transcription by glucose + GO:0046016, positive regulation of transcription by glucose Terms movements under GO Slim term 'protein transport ; GO:0015031' + GO:0007318, pole plasm protein localization + GO:0007319, negative regulation of oskar mRNA translation + GO:0008104, protein localization + GO:0008105, asymmetric protein localization + GO:0043143, translational machinery localization + GO:0045167, asymmetric protein localization involved in cell fate commitment + GO:0045175, basal protein localization + GO:0045176, apical protein localization + GO:0045184, establishment of protein localization + GO:0045185, maintenance of protein localization + GO:0046011, regulation of oskar mRNA translation + GO:0046012, positive regulation of oskar mRNA translation + GO:0046752, nuclear localization of viral capsid precursors + GO:0048115, pole plasm protein localization (sensu Insecta) Terms movements under GO Slim term 'protein metabolism ; GO:0019538' - GO:0000042, protein-Golgi targeting - GO:0000054, ribosome-nucleus export - GO:0000055, ribosomal large subunit-nucleus export - GO:0000056, ribosomal small subunit-nucleus export - GO:0000059, protein-nucleus import, docking - GO:0000060, protein-nucleus import, translocation - GO:0000061, protein-nucleus import, substrate release - GO:0000189, nuclear translocation of MAPK - GO:0000201, nuclear translocation of MAPK during cell wall biogenesis - GO:0000208, nuclear translocation of MAPK during osmolarity sensing - GO:0006605, protein targeting - GO:0006606, protein-nucleus import - GO:0006607, NLS-bearing substrate-nucleus import - GO:0006608, snRNP protein-nucleus import - GO:0006609, mRNA-binding (hnRNP) protein-nucleus import - GO:0006610, ribosomal protein-nucleus import - GO:0006611, protein-nucleus export - GO:0006612, protein-membrane targeting - GO:0006613, cotranslational protein-membrane targeting - GO:0006614, SRP-dependent cotranslational protein-membrane targeting - GO:0006615, SRP-dependent cotranslational protein-membrane targeting, docking - GO:0006616, SRP-dependent cotranslational protein-membrane targeting, translocation - GO:0006617, SRP-dependent cotranslational protein-membrane targeting, signal sequence recognition - GO:0006618, SRP-dependent cotranslational protein-membrane targeting, signal sequence processing - GO:0006619, SRP-independent cotranslational protein-membrane targeting - GO:0006620, posttranslational protein-membrane targeting - GO:0006621, protein-ER retention - GO:0006622, protein-lysosome targeting - GO:0006623, protein-vacuolar targeting - GO:0006624, vacuolar protein processing or maturation - GO:0006625, protein-peroxisome targeting - GO:0006626, protein-mitochondrial targeting - GO:0006993, sterol depletion response, sterol regulatory element binding-protein nuclear translocation - GO:0007184, SMAD protein nuclear translocation - GO:0007253, cytoplasmic sequestering of NF-kappaB - GO:0007262, STAT protein nuclear translocation - GO:0007318, pole plasm protein localization - GO:0008104, protein localization - GO:0008105, asymmetric protein localization - GO:0008588, release of cytoplasmic sequestered NF-kappaB - GO:0016558, peroxisome matrix protein import - GO:0030150, mitochondrial matrix protein import - GO:0035048, splicing factor protein-nucleus import - GO:0035105, sterol regulatory element binding-protein nuclear translocation - GO:0042306, regulation of protein-nucleus import - GO:0042307, positive regulation of protein-nucleus import - GO:0042308, negative regulation of protein-nucleus import - GO:0042345, regulation of NF-kappaB-nucleus import - GO:0042346, positive regulation of NF-kappaB-nucleus import - GO:0042347, negative regulation of NF-kappaB-nucleus import - GO:0042348, NF-kappaB-nucleus import - GO:0042990, regulation of transcription factor-nucleus import - GO:0042991, transcription factor-nucleus import - GO:0042992, negative regulation of transcription factor-nucleus import - GO:0042993, positive regulation of transcription factor-nucleus import - GO:0042994, cytoplasmic sequestering of transcription factor - GO:0045036, protein-chloroplast targeting - GO:0045037, chloroplast stroma protein import - GO:0045038, chloroplast thylakoid protein import - GO:0045039, mitochondrial inner membrane protein import - GO:0045040, mitochondrial outer membrane protein import - GO:0045041, mitochondrial intermembrane space protein import - GO:0045042, conservative mitochondrial IMS protein import - GO:0045043, non-conservative mitochondrial IMS protein import - GO:0045044, direct mitochondrial IMS protein import - GO:0045046, peroxisome membrane protein import - GO:0045047, protein-ER targeting - GO:0045048, protein-ER insertion - GO:0045049, ER insertion by N-terminal cleaved signal sequence - GO:0045050, ER insertion by stop-transfer membrane-anchor sequence - GO:0045051, ER insertion by internal uncleaved signal-anchor sequence - GO:0045052, ER insertion by GPI attachment sequence - GO:0045053, protein-Golgi retention - GO:0045167, asymmetric protein localization involved in cell fate commitment - GO:0045175, basal protein localization - GO:0045176, apical protein localization - GO:0045184, establishment of protein localization - GO:0045185, maintenance of protein localization - GO:0045204, MAPK nucleus export - GO:0045208, MAPK phosphatase nucleus export - GO:0045209, leptomycin B-sensitive MAPK phosphatase nucleus export - GO:0045319, SRP-independent cotranslational protein-membrane targeting, translocation - GO:0046752, nuclear localization of viral capsid precursors - GO:0046825, regulation of protein-nucleus export - GO:0046826, negative regulation of protein-nucleus export - GO:0046827, positive regulation of protein-nucleus export - GO:0048115, pole plasm protein localization (sensu Insecta) Terms movements under GO Slim term 'cell differentiation ; GO:0030154' - GO:0009845, seed germination - GO:0009846, pollen germination - GO:0010029, regulation of seed germination - GO:0010030, positive regulation of seed germination - GO:0010187, negative regulation of seed germination Terms movements under GO Slim term 'growth ; GO:0040007' - GO:0040034, regulation of development, heterochronic Terms movements under GO Slim term 'regulation of gene expression, epigenetic ; GO:0040029' + GO:0048097, long-term maintenance of gene activation SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 1001927 Works For Me New IsA links in binding (GO:0005488) (III) [none] 1002541 Fixed protein localization, targeting and transport [none] 1004598 Duplicate additiaonal parent chromatin assembly or disassembly [none] 1006568 Accepted EASY: myelin related terms GO:0043208-43209 GO:0043217-43220 1007174 Fixed query: term merge?: [none] 1007875 Accepted sensu terms [none] 1008115 Accepted adventurous gliding motility GO:0030982 1008193 Accepted GEM bodies == Cajal Bodies [none] 1008214 Accepted alkanesulphonate binding GO:0043210 1008274 Fixed definitions of coagulation factor...activity [none] 1012033 Works For Me def of sensory perception [none] 1012423 Fixed carbohydrate ABC transporter GO:0043211-43212 1012437 Accepted bacteriocin transport/er GO:0043213-43214 1012502 Accepted daunorubicin terms GO:0043215-43216 1012808 Accepted V.EASY:synonym for vasculogenesis [none] 1012811 Accepted regulation of muscle cell differentiation GO:0051145-51155 1012948 Accepted ntr: mismatched DNA binding GO:0030983 1012968 Accepted ntr alpha glucan biosynthesis GO:0030978-30980 1012997 Accepted kininogen binding GO:0030984-30988 1013068 Out of Date Pathogenic Terms [none] 1014406 Rejected DGC complex binding [none] 1017114 Fixed ATPase activity, coupled to proteolysis or peptidolysis [none] 1017591 Accepted vitamin A biosynthesis GO:0035238 1019665 Fixed merge 9387 and 3916? [none] 1019753 Fixed arginine N-methyltransferase definitions GO:0035241-35247 1020282 Fixed stem cell renewal, division and maintenance [none] 1021160 Accepted sensu Sacch. - sensu Fungi term merge [none] 1021194 Fixed merge 4293 and 4279 [none] 1021341 Fixed are 106 and 18271 the same? [none] 1021425 Rejected protein secretion/transport [none] 1021793 Accepted alpha-1,4-N-acetylgalactosaminyltransferase activity GO:0035248 1021954 Accepted monocarboxylate porter-/ monocarboxylic acid transporter [none] 1023096 Fixed protein prenylation - more merges [none] 1023157 Works For Me query pyrophosphatase/exopolyphosphatase [none] 1023216 Fixed GO:0030479 : actin cortical patch (sensu Fungi) [none] 1024287 Rejected kinetochore microtubule parentage [none] 1025226 Fixed merge 4393 into 15016 [none] 1025848 Fixed left/right symmetry/asymmetry [none] 1028016 Fixed NTR? inner centromere core 1028617 Fixed query actin nucleation/polymerization [none] 1029438 Accepted metel ion:hydrogen antiporter GO:0051139 1029473 Duplicate metel ion:hydrogen antiporter [none] 1029477 Accepted potassium ion-transporting ATPase complex GO:0031004 1029845 Duplicate tvp: polarisome [none] 1029875 Accepted new term request: ciliary rootlet GO:0035253 1029909 Accepted ntr: regulation of actin nucleation GO:0051125-51130 1029941 Accepted ntr: cytokinesis, actomyosin ring positioning [none] 1029947 Accepted filamin binding GO:0031005-31008 1029981 Works For Me GO:0004713 protein-tyrosine kinase activity [none] 1031771 Accepted ntr: response to drug GO:0031000-31001 1031893 Accepted add synonym CPF complex [none] 1031971 Fixed DBXref for GO:0009579 [none] 1032167 Accepted New terms: actin rod, actin tubule GO:0031002-31003 1032589 Fixed add parent: acyltransferase activity? [none] 1032688 Works For Me synonym GO:0008608 : spindle kinetochore attachment [none] 1032699 Accepted Troponin I binding GO:0031013-31014 1033430 Fixed TFIIIC and TFIID complexes, TPV? [none] 1033567 Accepted New term: INO80 complex GO:0031011 1034088 Accepted grouping term for nuclear export GO:0051168-51170 1035752 Accepted New terms and def for pancreas development GO:0031016-31018 1036107 Accepted ntr: meiotic sister chromatid cohesion GO:0051177 1037098 Duplicate ntr: linear element formation [none] 1037103 Duplicate ciliate nuclear terms and definition of nucleus (GO:0005634) [none] 1037650 Duplicate Grouping term for protein complexes [none] 763258 Postponed S/T kinase terms [none] 807972 Duplicate spore germination [none] 815892 Out of Date cytokinesis (0000910)/cell cycle relationship [none] 818578 Fixed possible term merge? remodeling complexes [none] 829499 Out of Date help with response to drug usage [none] 839270 Works For Me more DNA repair function in process/ new term? [none] 856144 Fixed mRNA catabolism query [none] 856162 Fixed new relationship RNA elongation/RNA elongation from Pol II [none] 858307 Fixed Q: GO:0000127 : transcription factor TFIIIC complex [none] 881265 Works For Me protein thiol-disulphide exchange parentage [none] 886220 Fixed new GO term for mol func - kleisin GO:0043221-43222 920935 Accepted poss add parentage? [none] 931134 Works For Me meiosis, mitosis and the cell cycle [none] 931157 Accepted regulation of centriole-centriole cohesion GO:0030997 931797 Works For Me Membrane organization & biogenesis GO:0048499 931854 Fixed merge of terms for EC:1.1.1.87 and EC:1.1.1.155 [none] 934233 Out of Date annotation/& ont query nuclear migration/nuclear positioning [none] 936299 Works For Me A new child of metalloendopeptidase activity [none] 940322 Accepted GO:0016805 dipeptidase activity definition [none] 940652 Works For Me cell growth, proliferation and morphogenesis [none] 945871 Works For Me sterol reductase [none] 945937 Accepted NTR: karyopherin docking complex GO:0031015 955301 Fixed Reduction process terms GO:0051061-51068 956939 Accepted NK T-cell new terms and synonyms GO:0051132-51138 GO:0051140-51142 975438 Accepted developmental timing GO:0048504-48510 979319 Fixed path change - extracellular matrix (sensu magnoliophyta) GO:0031012 979621 Accepted ntr: cell separation related GO:0030994-30995 981127 Accepted cell cycle arrest in response to nitrogen starvation GO:0030996 981165 Fixed inc parentage: rgulation of protein kinase activity [none] 981422 Accepted change path of [30931] ADPG pyrophosphorylase complex (sensu GO:0031009 983486 Accepted ntr: linear element GO:0030998-30999 984127 Fixed UDP-glycosyltransferase activity GO:0035250-35252 991824 Fixed GO:0042594 : response to starvation GO:0043207 991827 Fixed mRNA editing complex (GO:0045293) GO:0031019-31020 991969 Fixed ethene vs. ethylene [none] 991981 Accepted propanediol utilization GO:0051143-51144 991995 Accepted signal recognition particle GO:0048500-48501 993328 Accepted ntr: cortical microtubule cytoskeleton GO:0030981 997064 Accepted germination node reorganization [none] 998768 Works For Me motility terms [none] 999282 Fixed function transporter terms for obsoletion [none] 999323 Fixed Process terms for obsoletion [none] Statistics: component: 1470 terms, 91.0% defined (1338 terms defined) function: 7423 terms, 89.2% defined (6622 terms defined) process: 8964 terms, 94.6% defined (8478 terms defined) Total: 17857 terms, 92.1% defined (16438 terms defined) Term errors none