GO Monthly Release Notes for April 2004
========================
Generated on Wed Jun 2 17:44:46 2004
Files used:
component old: 1.28 new: 1.28
function old: 1.28 new: 1.28
process old: 1.28 new: 1.28
definitions old: 1.28 new: 1.28
GO Slim: Generic.0208
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in component ontology (13 new terms)
GO:0000812 GO:0005654 SGD D 918400 SWR1 complex
GO:0030929 GO:0005737 MAH D 919710 ADPG pyrophosphorylase complex
GO:0030930 GO:0005737 MAH D 919710 ADPG pyrophosphorylase complex (sensu Bacteria)
GO:0030931 GO:0005737 MAH D 919710 ADPG pyrophosphorylase complex (sensu Eukaryota)
GO:0009536
GO:0030932 GO:0005737 MAH D 919710 amyloplast ADPG pyrophosphorylase complex
GO:0009536
GO:0030933 GO:0005737 MAH D 919710 chloroplast ADPG pyrophosphorylase complex
GO:0009536
GO:0030934 GO:0005578 MAH D 931670 anchoring collagen
GO:0030935 GO:0005578 MAH D 931670 sheet-forming collagen
GO:0030936 GO:0005578 MAH D 931670 transmembrane collagen
GO:0030937 GO:0005578 MAH D 931670 collagen type XVII
GO:0030938 GO:0005578 MAH D 931670 collagen type XVIII
GO:0035145 GO:0005634 FB D 929793 exon-exon junction complex
GO:0048353 GO:0005634 JIC D 935931 primary endosperm nucleus
Term name changes in component ontology
GO:0000923: equatorial mitotic organizing center --> equatorial microtubule organizing center
GO:0001725: stress fibers --> stress fiber
GO:0005593: facit collagen --> FACIT collagen
New definitions for component ontology terms (35 new definitions)
GO:0000120, RNA polymerase I transcription factor complex
GO:0001650, fibrillar center
GO:0001651, dense fibrillar component
GO:0001652, granular component
GO:0005582, collagen type XV
GO:0005583, fibrillar collagen
GO:0005584, collagen type I
GO:0005585, collagen type II
GO:0005586, collagen type III
GO:0005587, collagen type IV
GO:0005588, collagen type V
GO:0005589, collagen type VI
GO:0005590, collagen type VII
GO:0005591, collagen type VIII
GO:0005592, collagen type XI
GO:0005593, FACIT collagen
GO:0005594, collagen type IX
GO:0005595, collagen type XII
GO:0005596, collagen type XIV
GO:0005597, collagen type XVI
GO:0005598, short-chain collagen
GO:0005599, collagen type X
GO:0005600, collagen type XIII
GO:0005621, bud scar
GO:0005669, transcription factor TFIID complex
GO:0005769, early endosome
GO:0030025, NADH:plastoquinone reductase complex
GO:0030083, PSI associated light-harvesting complex I, LHCIa subcomplex
GO:0030084, PSI associated light-harvesting complex I, LHCIb subcomplex
GO:0030085, PSII associated light-harvesting complex II, peripheral complex, LHCIIb subcomplex
GO:0030090, reaction center (sensu Proteobacteria)
GO:0030386, ferredoxin:thioredoxin reductase complex
GO:0030445, yeast-form cell wall
GO:0030446, hyphal cell wall
GO:0030891, VCB complex
Term movements in component ontology:
Terms movements under GO Slim term 'cell ; GO:0005623'
+ GO:0009941, chloroplast envelope
New terms in function ontology (34 new terms)
GO:0001846 GO:0005515 MGI D 928541 opsonin binding
GO:0001847 GO:0004872 MGI D 928541 opsonin receptor activity
GO:0005515
GO:0001848 GO:0005515 MGI D 928541 complement binding
GO:0001849 GO:0005515 MGI D 928541 complement component C1q binding
GO:0001850 GO:0005515 MGI D 928541 complement component C3a binding
GO:0001851 GO:0005515 MGI D 928541 complement component C3b binding
GO:0001852 GO:0005515 MGI D 928541 complement component iC3b binding
GO:0001853 GO:0005515 MGI D 928541 complement component C3dg binding
GO:0001854 GO:0005515 MGI D 928541 complement component C3d binding
GO:0001855 GO:0005515 MGI D 928541 complement component C4b binding
GO:0001856 GO:0005515 MGI D 928541 complement component C5a binding
GO:0001857 GO:0004872 MGI D 928541 complement component C1q receptor activity
GO:0005515
GO:0001858 GO:0004872 MGI D 928541 complement component iC3b receptor activity
GO:0005515
GO:0001859 GO:0004872 MGI D 928541 complement component C3dg receptor activity
GO:0005515
GO:0001860 GO:0004872 MGI D 928541 complement component C3d receptor activity
GO:0005515
GO:0001861 GO:0004872 MGI D 928541 complement component C4b receptor activity
GO:0005515
GO:0001862 GO:0005515 MGI D 928541 collectin binding
GO:0001863 GO:0004872 MGI D 928541 collectin receptor activity
GO:0005515
GO:0001864 GO:0005515 MGI D 928541 pentraxin binding
GO:0030928 GO:0003824 MAH D dopachrome decarboxylase activity
GO:0043135 GO:0003824 JL D 837771 5-phosphoribosyl 1-pyrophosphate pyrophosphatase activity
GO:0043136 GO:0003824 JL D 837771 glycerol-3-phosphatase activity
GO:0043138 GO:0003824 JL D 837771 3' to 5' DNA helicase activity
GO:0043139 GO:0003824 JL D 837771 5' to 3' DNA helicase activity
GO:0043140 GO:0003824 JL D 837771 ATP-dependent 3' to 5' DNA helicase activity
GO:0043141 GO:0003824 JL D 837771 ATP-dependent 5' to 3' DNA helicase activity
GO:0043142 GO:0003824 JL D 837771 single-stranded DNA-dependent ATPase activity
GO:0048365 GO:0005515 JIC D 942220 Rac GTPase binding
GO:0051015 GO:0003779 AI D 921672 actin filament binding
GO:0051018 GO:0005515 AI D 926014 protein kinase A binding
GO:0051019 GO:0005515 AI D 926014 mitogen-activated protein kinase binding
GO:0051020 GO:0005515 AI D 931045 GTPase binding
GO:0051021 GO:0005515 AI D 931045 GDP-dissociation inhibitor binding
GO:0051022 GO:0005515 AI D 931045 Rho GDP-dissociation inhibitor binding
New obsoletions in function ontology
GO:0003780, actin cross-linking activity: represents a combination of molecular functions.
GO:0003781, actin bundling activity: represents a biological process.
GO:0003782, F-actin capping activity: describes a biological process.
GO:0003783, barbed-end actin capping activity: describes a biological process.
GO:0003784, barbed-end actin capping/severing activity: describes two biological processes.
GO:0003789, actin filament severing activity: describe a biological process.
GO:0003925, small monomeric GTPase activity: represents a gene product and contains cellular component information.
GO:0003926, ARF small monomeric GTPase activity: represents a gene product.
GO:0003927, heterotrimeric G-protein GTPase activity: represents a cellular component.
GO:0003928, RAB small monomeric GTPase activity: represents a gene product.
GO:0003929, RAN small monomeric GTPase activity: represents a gene product.
GO:0003930, RAS small monomeric GTPase activity: represents a gene product.
GO:0003931, Rho small monomeric GTPase activity: represents a gene product.
GO:0003932, SAR small monomeric GTPase activity: represents a gene product.
GO:0005077, MAP-kinase anchoring activity: represents a combination of process and function information.
GO:0005079, protein kinase A anchoring activity: represents a combination of process and function information.
GO:0008351, microtubule severing activity: describe a biological process.
GO:0008547, protein-synthesizing GTPase activity: represents a gene product.
GO:0008548, signal-recognition-particle GTPase activity: represents a gene product.
GO:0008549, dynamin GTPase activity: represents a gene product.
GO:0008550, tubulin GTPase activity: represents a gene product.
GO:0008619, RHEB small monomeric GTPase activity: represents a gene product.
GO:0042057, transforming growth factor beta receptor anchoring activity: represents a combination of process and function information.
GO:0050800, hydrolase activity, acting on acid anhydrides, acting on GTP, involved in cellular and subcellular movement: represents both process and function information.
Term name changes in function ontology
GO:0004878: complement component C5 receptor activity --> complement component C5a receptor activity
GO:0008408: 3'-5'-exonuclease activity --> 3'-5' exonuclease activity
GO:0009035: type 1 site-specific deoxyribonuclease activity --> type I site-specific deoxyribonuclease activity
GO:0017048: Rho binding --> Rho GTPase binding
GO:0047179: platelet-activating factor acetyltransferase activity --> platelet activating factor acetyltransferase activity
GO:0050997: quatenary ammonium group binding --> quaternary ammonium group binding
New definitions for function ontology terms (64 new definitions)
GO:0003780, actin cross-linking activity
GO:0003781, actin bundling activity
GO:0003782, F-actin capping activity
GO:0003783, barbed-end actin capping activity
GO:0003784, barbed-end actin capping/severing activity
GO:0003785, actin monomer binding
GO:0003786, actin lateral binding
GO:0003789, actin filament severing activity
GO:0004112, cyclic-nucleotide phosphodiesterase activity
GO:0004693, cyclin-dependent protein kinase activity
GO:0004875, complement receptor activity
GO:0004876, complement component C3a receptor activity
GO:0004877, complement component C3b receptor activity
GO:0004878, complement component C5a receptor activity
GO:0008029, pentraxin receptor activity
GO:0008131, amine oxidase activity
GO:0008351, microtubule severing activity
GO:0008536, RAN protein binding
GO:0008538, proteasome activator activity
GO:0008640, ubiquitin-like conjugating enzyme activity
GO:0009378, Holliday junction helicase activity
GO:0015664, nicotinamide mononucleotide permease activity
GO:0015922, aspartate oxidase activity
GO:0016538, cyclin-dependent protein kinase regulator activity
GO:0016631, enoyl-[acyl-carrier protein] reductase activity
GO:0016806, dipeptidyl-peptidase and tripeptidyl-peptidase activity
GO:0016888, endodeoxyribonuclease activity, producing 5'-phosphomonoesters
GO:0016889, endodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0016891, endoribonuclease activity, producing 5'-phosphomonoesters
GO:0016892, endoribonuclease activity, producing 3'-phosphomonoesters
GO:0016895, exodeoxyribonuclease activity, producing 5'-phosphomonoesters
GO:0016896, exoribonuclease activity, producing 5'-phosphomonoesters
GO:0016897, exoribonuclease activity, producing 3'-phosphomonoesters
GO:0016929, SUMO-specific protease activity
GO:0017017, MAP kinase phosphatase activity
GO:0017125, deoxycytidyl transferase activity
GO:0019789, SUMO ligase activity
GO:0019948, SUMO activating enzyme activity
GO:0030024, NADH:plastoquinone reductase activity
GO:0030291, protein serine/threonine kinase inhibitor activity
GO:0030292, protein tyrosine kinase inhibitor activity
GO:0030342, 1-alpha,25-dihydroxyvitamin D3 (1,25-(OH)2D3) 24-hydroxylase activity
GO:0030343, vitamin D3 25-hydroxylase activity
GO:0030350, iron-responsive element binding
GO:0030353, fibroblast growth factor receptor antagonist activity
GO:0030385, ferredoxin:thioredoxin reductase activity
GO:0030548, acetylcholine receptor regulator activity
GO:0030549, acetylcholine receptor activator activity
GO:0030550, acetylcholine receptor inhibitor activity
GO:0030555, RNA modification guide activity
GO:0030556, rRNA modification guide activity
GO:0030557, tRNA modification guide activity
GO:0030558, RNA pseudouridylation guide activity
GO:0030559, rRNA pseudouridylation guide activity
GO:0030560, tRNA pseudouridylation guide activity
GO:0030561, RNA 2'-O-ribose methylation guide activity
GO:0030562, rRNA 2'-O-ribose methylation guide activity
GO:0030564, tRNA 2'-O-ribose methylation guide activity
GO:0030566, snRNA modification guide activity
GO:0030567, prothrombin activator activity
GO:0030613, oxidoreductase activity, acting on phosphorus or arsenic in donors
GO:0030614, oxidoreductase activity, acting on phosphorus or arsenic in donors, with disulfide as acceptor
GO:0030743, rRNA (adenosine-2'-O-)-methyltransferase activity
GO:0030748, amine N-methyltransferase activity
New term merges in function ontology
GO:0004041 has been merged into GO:0008131, amine oxidase activity
GO:0004296 has been merged into GO:0008243, plasminogen activator activity
GO:0004297 has been merged into GO:0008243, plasminogen activator activity
GO:0008122 has been merged into GO:0008131, amine oxidase activity
GO:0008698 has been merged into GO:0050515, 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity
GO:0019986 has been merged into GO:0017125, deoxycytidyl transferase activity
GO:0050381 has been merged into GO:0004497, monooxygenase activity
Term movements in function ontology:
Terms movements under GO Slim term 'actin binding ; GO:0003779'
- GO:0003780, actin cross-linking activity
- GO:0003781, actin bundling activity
- GO:0003782, F-actin capping activity
- GO:0003783, barbed-end actin capping activity
- GO:0003784, barbed-end actin capping/severing activity
- GO:0003789, actin filament severing activity
Terms movements under GO Slim term 'catalytic activity ; GO:0003824'
- GO:0003925, small monomeric GTPase activity
- GO:0003926, ARF small monomeric GTPase activity
- GO:0003927, heterotrimeric G-protein GTPase activity
- GO:0003928, RAB small monomeric GTPase activity
- GO:0003929, RAN small monomeric GTPase activity
- GO:0003930, RAS small monomeric GTPase activity
- GO:0003931, Rho small monomeric GTPase activity
- GO:0003932, SAR small monomeric GTPase activity
- GO:0008547, protein-synthesizing GTPase activity
- GO:0008548, signal-recognition-particle GTPase activity
- GO:0008549, dynamin GTPase activity
- GO:0008550, tubulin GTPase activity
- GO:0008619, RHEB small monomeric GTPase activity
- GO:0050800, hydrolase activity, acting on acid anhydrides, acting on GTP, involved in cellular and subcellular movement
Terms movements under GO Slim term 'signal transducer activity ; GO:0004871'
- GO:0005077, MAP-kinase anchoring activity
- GO:0005079, protein kinase A anchoring activity
- GO:0042057, transforming growth factor beta receptor anchoring activity
Terms movements under GO Slim term 'binding ; GO:0005488'
- GO:0005041, low-density lipoprotein receptor activity
- GO:0008034, lipoprotein binding
- GO:0008035, high-density lipoprotein binding
- GO:0030169, low-density lipoprotein binding
- GO:0042497, triacylated lipoprotein binding
- GO:0042498, diacylated lipoprotein binding
Terms movements under GO Slim term 'protein binding ; GO:0005515'
+ GO:0004875, complement receptor activity
+ GO:0004876, complement component C3a receptor activity
+ GO:0004877, complement component C3b receptor activity
+ GO:0004878, complement component C5a receptor activity
+ GO:0005041, low-density lipoprotein receptor activity
+ GO:0008029, pentraxin receptor activity
+ GO:0008030, neuronal pentraxin receptor activity
+ GO:0008034, lipoprotein binding
+ GO:0008035, high-density lipoprotein binding
+ GO:0030169, low-density lipoprotein binding
+ GO:0042497, triacylated lipoprotein binding
+ GO:0042498, diacylated lipoprotein binding
Terms movements under GO Slim term 'cytoskeletal protein binding ; GO:0008092'
- GO:0008351, microtubule severing activity
New terms in process ontology (121 new terms)
GO:0001845 GO:0006810 MGI D 928541 phagolysosome formation
GO:0001865 GO:0007275 MGI D NK T-cell differentiation
GO:0007582
GO:0008150
GO:0009607
GO:0030154
GO:0001866 GO:0007582 MGI D NK T-cell proliferation
GO:0008150
GO:0008283
GO:0009607
GO:0001867 GO:0006950 MGI D 928542 complement activation, lectin pathway
GO:0007582
GO:0009607
GO:0001868 GO:0006950 MGI D 928542 regulation of complement activation, lectin pathway
GO:0007582
GO:0009607
GO:0001869 GO:0006950 MGI D 928542 negative regulation of complement activation, lectin pathway
GO:0007582
GO:0009607
GO:0001870 GO:0006950 MGI D 928542 positive regulation of complement activation, lectin pathway
GO:0007582
GO:0009607
GO:0030919 GO:0006464 MAH D peptidyl-serine O-acetylation
GO:0030920 GO:0006464 MAH D peptidyl-serine acetylation
GO:0030921 GO:0006464 MAH D peptidyl-tyrosine dehydrogenation to form (Z)-2,3-didehydrotyrosine
GO:0030922 GO:0006464 MAH D peptidyl-tyrosine dehydrogenation to form (E)-2,3-didehydrotyrosine
GO:0030923 GO:0006464 MAH D metal incorporation into metallo-oxygen cluster
GO:0030924 GO:0006464 MAH D manganese incorporation into metallo-oxygen cluster
GO:0030925 GO:0006464 MAH D calcium incorporation into metallo-oxygen cluster
GO:0030926 GO:0006464 MAH D calcium incorporation into metallo-oxygen cluster via bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide
GO:0030927 GO:0006464 MAH D manganese incorporation into metallo-oxygen cluster via bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide
GO:0030939 GO:0009628 MAH D 935371 response to long-day photoperiod
GO:0030940 GO:0009628 MAH D 935371 response to short-day photoperiod
GO:0035146 GO:0007275 FB D 931127 tube fusion
GO:0035147 GO:0007275 FB D 931127 tracheal branch fusion
GO:0035148 GO:0007275 FB D 931127 lumen formation
GO:0035149 GO:0007275 FB D 931127 tracheal lumen formation
GO:0035150 GO:0007275 FB D 931127 regulation of tube size
GO:0035151 GO:0007275 FB D 931127 regulation of tracheal tube size
GO:0035152 GO:0007275 FB D 931127 regulation of tracheal tube architecture
GO:0035153 GO:0007275 FB D 931127 tracheal cell type specification
GO:0030154
GO:0035154 GO:0007275 FB D 931127 terminal cell fate specification
GO:0030154
GO:0035155 GO:0007275 FB D 931127 negative regulation of terminal cell fate specification
GO:0030154
GO:0035156 GO:0007275 FB D 931127 fusion cell fate specification
GO:0030154
GO:0035157 GO:0007275 FB D 931127 negative regulation of fusion cell fate specification
GO:0030154
GO:0035158 GO:0007275 FB D 931127 regulation of tracheal tube diameter
GO:0035159 GO:0007275 FB D 931127 regulation of tracheal tube length
GO:0035160 GO:0007275 FB D 931127 maintenance of tracheal epithelial integrity
GO:0035161 GO:0007275 FB D imaginal disc lineage restriction
GO:0043132 GO:0006810 JL D NAD transport
GO:0043137 GO:0006259 JL D 837771 DNA replication, removal of RNA primer
GO:0007049
GO:0043143 GO:0006412 JL D 837771 translational machinery localization
GO:0019538
GO:0043144 GO:0008152 JL D 837771 snoRNA processing
GO:0043145 GO:0008152 JL D snoRNA 3' end cleavage
GO:0043146 GO:0007010 JL D spindle stabilization
GO:0007049
GO:0043147 GO:0007010 JL D meiotic spindle stabilization
GO:0007049
GO:0043148 GO:0007010 JL D mitotic spindle stabilization
GO:0007049
GO:0043149 GO:0007010 JL D stress fiber formation
GO:0043150 GO:0006259 JL D 903114 DNA synthesis during double-strand break repair via homologous recombination
GO:0006950
GO:0007049
GO:0009719
GO:0043151 GO:0006259 JL D 903114 DNA synthesis during double-strand break repair via single-strand annealing
GO:0006950
GO:0007049
GO:0009719
GO:0043152 GO:0006950 JL D 905801 induction of bacterial agglutination
GO:0007582
GO:0009607
GO:0043153 GO:0007610 JL D 935636 entrainment of circadian clock by photoperiod
GO:0009628
GO:0043154 GO:0008219 JL D 938713 negative regulation of caspase activation
GO:0043155 GO:0006091 JL D 938713 negative regulation of photosynthesis, light reaction
GO:0007582
GO:0008150
GO:0043156 GO:0006259 JL D 940146 chromatin remodeling in response to cation stress
GO:0006950
GO:0009628
GO:0016043
GO:0043157 GO:0006950 JL D 940146 response to cation stress
GO:0009628
GO:0048318 GO:0007275 JIC D 889881 axial mesoderm development
GO:0048319 GO:0007275 JIC D 889881 axial mesoderm morphogenesis
GO:0048320 GO:0007275 JIC D 889881 axial mesoderm formation
GO:0048321 GO:0007275 JIC D 889881 axial mesoderm cell differentiation
GO:0048322 GO:0007275 JIC D 889881 axial mesoderm cell fate commitment
GO:0030154
GO:0048323 GO:0007275 JIC D 889881 axial mesoderm cell fate determination
GO:0030154
GO:0048324 GO:0007275 JIC D 889881 regulation of axial mesoderm cell fate determination
GO:0030154
GO:0048325 GO:0007275 JIC D 889881 negative regulation of axial mesoderm cell fate determination
GO:0030154
GO:0048326 GO:0007275 JIC D 889881 positive regulation of axial mesoderm cell fate determination
GO:0030154
GO:0048327 GO:0007275 JIC D 889881 axial mesoderm cell fate specification
GO:0030154
GO:0048328 GO:0007275 JIC D 889881 regulation of axial mesoderm cell fate specification
GO:0030154
GO:0048329 GO:0007275 JIC D 889881 negative regulation of axial mesoderm cell fate specification
GO:0030154
GO:0048330 GO:0007275 JIC D 889881 positive regulation of axial mesoderm cell fate specification
GO:0030154
GO:0048331 GO:0007275 JIC D 889881 axial mesoderm structural development
GO:0048332 GO:0007275 JIC D 889881 mesoderm morphogenesis
GO:0048333 GO:0007275 JIC D 889881 mesoderm cell differentiation
GO:0048334 GO:0007275 JIC D 889881 regulation of mesoderm cell fate determination
GO:0030154
GO:0048335 GO:0007275 JIC D 889881 negative regulation of mesoderm cell fate determination
GO:0030154
GO:0048336 GO:0007275 JIC D 889881 positive regulation of mesoderm cell fate determination
GO:0030154
GO:0048337 GO:0007275 JIC D 889881 positive regulation of mesoderm cell fate specification
GO:0030154
GO:0048338 GO:0007275 JIC D 889881 mesoderm structural development
GO:0048339 GO:0007275 JIC D 889881 paraxial mesoderm development
GO:0048340 GO:0007275 JIC D 889881 paraxial mesoderm morphogenesis
GO:0048341 GO:0007275 JIC D 889881 paraxial mesoderm formation
GO:0048342 GO:0007275 JIC D 889881 paraxial mesoderm cell differentiation
GO:0048343 GO:0007275 JIC D 889881 paraxial mesoderm cell fate commitment
GO:0030154
GO:0048344 GO:0007275 JIC D 889881 paraxial mesoderm cell fate determination
GO:0030154
GO:0048345 GO:0007275 JIC D 889881 regulation of paraxial mesoderm cell fate determination
GO:0030154
GO:0048346 GO:0007275 JIC D 889881 positive regulation of paraxial mesoderm cell fate determination
GO:0030154
GO:0048347 GO:0007275 JIC D 889881 negative regulation of paraxial mesoderm cell fate determination
GO:0030154
GO:0048348 GO:0007275 JIC D 889881 paraxial mesoderm cell fate specification
GO:0030154
GO:0048349 GO:0007275 JIC D 889881 regulation of paraxial mesoderm cell fate specification
GO:0030154
GO:0048350 GO:0007275 JIC D 889881 positive regulation of paraxial mesoderm cell fate specification
GO:0030154
GO:0048351 GO:0007275 JIC D 889881 negative regulation of paraxial mesoderm cell fate specification
GO:0030154
GO:0048352 GO:0007275 JIC D 889881 paraxial mesoderm structural development
GO:0048354 GO:0007275 JIC D 929943 mucilage biosynthesis during seed coat development
GO:0008152
GO:0009058
GO:0048355 GO:0008152 JIC D 929943 root cap mucilage biosynthesis
GO:0009058
GO:0048356 GO:0008152 JIC D 929943 root epithelial mucilage biosynthesis
GO:0009058
GO:0048357 GO:0008152 JIC D 929943 pedicel mucilage biosynthesis
GO:0009058
GO:0048358 GO:0005975 JIC D 929943 mucilage pectin biosynthesis
GO:0008152
GO:0009058
GO:0048359 GO:0007275 JIC D 929943 mucilage metabolism during seed coat development
GO:0008152
GO:0048360 GO:0008152 JIC D 929943 root cap mucilage metabolism
GO:0048361 GO:0008152 JIC D 929943 root epithelial mucilage metabolism
GO:0048362 GO:0008152 JIC D 929943 pedicel mucilage metabolism
GO:0048363 GO:0005975 JIC D 929943 mucilage pectin metabolism
GO:0008152
GO:0048364 GO:0007275 JIC D 929943 root development
GO:0048366 GO:0007275 JIC D leaf development
GO:0048367 GO:0007275 JIC D shoot development
GO:0048368 GO:0007275 JIC D lateral mesoderm development
GO:0048369 GO:0007275 JIC D lateral mesoderm morphogenesis
GO:0048370 GO:0007275 JIC D lateral mesoderm formation
GO:0048371 GO:0007275 JIC D lateral mesoderm cell differentiation
GO:0048372 GO:0007275 JIC D lateral mesoderm cell fate commitment
GO:0030154
GO:0048373 GO:0007275 JIC D lateral mesoderm cell fate determination
GO:0030154
GO:0048374 GO:0007275 JIC D regulation of lateral mesoderm cell fate determination
GO:0030154
GO:0048375 GO:0007275 JIC D negative regulation of lateral mesoderm cell fate determination
GO:0030154
GO:0048376 GO:0007275 JIC D positive regulation of lateral mesoderm cell fate determination
GO:0030154
GO:0048377 GO:0007275 JIC D lateral mesoderm cell fate specification
GO:0030154
GO:0048378 GO:0007275 JIC D regulation of lateral mesoderm cell fate specification
GO:0030154
GO:0048379 GO:0007275 JIC D positive regulation of lateral mesoderm cell fate specification
GO:0030154
GO:0048380 GO:0007275 JIC D negative regulation of lateral mesoderm cell fate specification
GO:0030154
GO:0048381 GO:0007275 JIC D lateral mesoderm structural development
GO:0051013 GO:0007010 AI D 921672 microtubule severing
GO:0051014 GO:0007010 AI D 921672 actin filament severing
GO:0051016 GO:0007010 AI D 921672 barbed-end actin filament capping
GO:0051017 GO:0007010 AI D 921672 actin filament bundle formation
GO:0051023 GO:0006950 AI D regulation of immunoglobulin secretion
GO:0007582
GO:0009607
GO:0051024 GO:0006950 AI D positive regulation of immunoglobulin secretion
GO:0007582
GO:0009607
GO:0051025 GO:0006950 AI D negative regulation of immunoglobulin secretion
GO:0007582
GO:0009607
GO:0051026 GO:0007049 AI D 822629 chiasma formation
New obsoletions in process ontology
GO:0006912, phagosome formation: of the amibiguity in its meaning. Consider using GO:0006911 phagocytosis, engulfment or GO:0001845, phagolysosome formation instead.
Term name changes in process ontology
GO:0000072: M-phase specific microtubule process --> M phase specific microtubule process
GO:0000115: S-specific transcription in mitotic cell cycle --> S-phase-specific transcription in mitotic cell cycle
GO:0000731: DNA repair synthesis --> DNA synthesis during DNA repair
GO:0000915: cytokinesis, actomyosin ring formation --> cytokinesis, contractile ring formation
GO:0000916: cytokinesis, actomyosin ring contraction --> cytokinesis, contractile ring contraction
GO:0001578: microtubule bundling --> microtubule bundle formation
GO:0006269: DNA replication, priming --> DNA replication, synthesis of RNA primer
GO:0006910: phagocytosis, binding --> phagocytosis, recognition
GO:0008164: organophosphorous resistance --> organophosphorus resistance
GO:0008544: epidermal differentiation --> epidermis development
GO:0009651: salinity response --> response to salt stress
GO:0009996: negative regulation of cell fate --> negative regulation of cell fate specification
GO:0009997: negative regulation of cardioblast cell fate --> negative regulation of cardioblast cell fate specification
GO:0009998: negative regulation of retinal cone cell fate --> negative regulation of retinal cone cell fate specification
GO:0009999: negative regulation of hair cell fate --> negative regulation of hair cell fate specification
GO:0010000: negative regulation of cone cell fate (sensu Drosophila) --> negative regulation of cone cell fate specification (sensu Drosophila)
GO:0016356: organophosphorous susceptibility/resistance --> organophosphorus susceptibility/resistance
GO:0042491: hair cell differentiation --> auditory hair cell differentiation
GO:0042659: regulation of cell fate --> regulation of cell fate specification
GO:0042660: positive regulation of cell fate --> positive regulation of cell fate specification
GO:0042661: regulation of mesoderm cell fate --> regulation of mesoderm cell fate specification
GO:0042662: negative regulation of mesoderm cell fate --> negative regulation of mesoderm cell fate specification
GO:0042663: regulation of endoderm cell fate --> regulation of endoderm cell fate specification
GO:0042664: negative regulation of endoderm cell fate --> negative regulation of endoderm cell fate specification
GO:0042665: regulation of ectoderm cell fate --> regulation of ectoderm cell fate specification
GO:0042666: negative regulation of ectoderm cell fate --> negative regulation of ectoderm cell fate specification
GO:0042669: regulation of hair cell fate --> regulation of hair cell fate specification
GO:0042673: regulation of retinal cone cell fate --> regulation of retinal cone cell fate specification
GO:0042681: regulation of cone cell fate (sensu Drosophila) --> regulation of cone cell fate specification (sensu Drosophila)
GO:0042682: regulation of cone cell fate --> regulation of cone cell fate specification
GO:0042683: negative regulation of cone cell fate --> negative regulation of cone cell fate specification
GO:0042686: regulation of cardioblast cell fate --> regulation of cardioblast cell fate specification
GO:0045011: actin cable assembly --> actin cable formation
GO:0045128: suppression of meiotic recombination --> negative regulation of meiotic recombination
New definitions for process ontology terms (80 new definitions)
GO:0000076, DNA replication checkpoint
GO:0000292, RNA fragment catabolism
GO:0006265, DNA topological change
GO:0006268, DNA unwinding
GO:0006269, DNA replication, synthesis of RNA primer
GO:0006270, DNA replication initiation
GO:0006271, DNA strand elongation
GO:0006272, leading strand elongation
GO:0006273, lagging strand elongation
GO:0006277, DNA amplification
GO:0006279, premeiotic DNA synthesis
GO:0006382, adenosine to inosine editing
GO:0006739, NADPH metabolism
GO:0006741, NADPH biosynthesis
GO:0006742, NADPH catabolism
GO:0006743, ubiquinone metabolism
GO:0006744, ubiquinone biosynthesis
GO:0006910, phagocytosis, recognition
GO:0006911, phagocytosis, engulfment
GO:0006912, phagosome formation
GO:0006956, complement activation
GO:0006957, complement activation, alternative pathway
GO:0006958, complement activation, classical pathway
GO:0007064, mitotic sister chromatid cohesion
GO:0007093, mitotic checkpoint
GO:0007094, mitotic spindle checkpoint
GO:0007113, endomitotic cell cycle
GO:0007398, ectoderm development
GO:0007443, Malpighian tubule morphogenesis
GO:0007453, clypeo-labral disc metamorphosis
GO:0007454, labial disc metamorphosis
GO:0007455, eye-antennal disc metamorphosis
GO:0007470, prothoracic disc metamorphosis
GO:0007472, wing disc metamorphosis
GO:0007475, apposition of dorsal and ventral wing surfaces
GO:0007478, leg disc metamorphosis
GO:0007479, leg disc proximal/distal pattern formation
GO:0007481, haltere disc metamorphosis
GO:0007483, genital disc metamorphosis
GO:0007488, histoblast metamorphosis
GO:0007489, maintenance of imaginal histoblast diploidy
GO:0007492, endoderm development
GO:0007498, mesoderm development
GO:0007502, gut mesoderm development
GO:0007506, gonadal mesoderm development
GO:0008544, epidermis development
GO:0008587, wing margin morphogenesis
GO:0008635, caspase activation via cytochrome c
GO:0008636, caspase activation via phosphorylation
GO:0009642, response to light intensity
GO:0009648, response to photoperiod
GO:0009906, response to photoperiod, blue light
GO:0009907, response to photoperiod, red light
GO:0016233, telomere capping
GO:0016237, microautophagy
GO:0016547, RNA editing
GO:0016548, rRNA editing
GO:0016550, insertion/deletion editing
GO:0016551, posttranscriptional insertion/deletion editing
GO:0016552, cotranscriptional insertion/deletion editing
GO:0016553, base conversion/substitution editing
GO:0016554, cytidine to uridine editing
GO:0016555, uridine to cytidine editing
GO:0018394, peptidyl-lysine acetylation
GO:0018533, peptidyl-cysteine acetylation
GO:0030321, transepithelial chloride transport
GO:0030327, prenylated protein catabolism
GO:0030433, ER-associated protein catabolism
GO:0030436, sporulation (sensu Bacteria)
GO:0030437, sporulation (sensu Fungi)
GO:0030452, group I intron catabolism
GO:0030540, female genital morphogenesis
GO:0030541, plasmid partitioning
GO:0030542, plasmid partitioning (sensu Bacteria)
GO:0030543, 2-micrometer plasmid partitioning
GO:0030859, polarized epithelial cell differentiation
GO:0030860, regulation of polarized epithelial cell differentiation
GO:0030861, negative regulation of polarized epithelial cell differentiation
GO:0030862, positive regulation of polarized epithelial cell differentiation
GO:0045128, negative regulation of meiotic recombination
New term merges in process ontology
GO:0000071 has been merged into GO:0030472, mitotic spindle assembly (sensu Fungi)
GO:0030608 has been merged into GO:0030606, mitotic spindle positioning (sensu Fungi)
GO:0030609 has been merged into GO:0030607, mitotic spindle orientation (sensu Fungi)
GO:0030610 has been merged into GO:0030605, mitotic spindle positioning and orientation (sensu Fungi)
GO:0046846 has been merged into GO:0007425, tracheal cell fate determination (sensu Insecta)
Term movements in process ontology:
Terms movements under GO Slim term 'transport ; GO:0006810'
- GO:0006912, phagosome formation
Terms movements under GO Slim term 'response to stress ; GO:0006950'
+ GO:0000707, meiotic DNA recombinase assembly
+ GO:0000711, meiotic DNA repair synthesis
+ GO:0000734, gene conversion at MAT locus, DNA repair synthesis
+ GO:0007146, meiotic recombination nodule assembly
+ GO:0042139, early meiotic recombination nodule assembly
+ GO:0042140, late meiotic recombination nodule assembly
Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010'
+ GO:0030034, microvillar actin bundle formation
Terms movements under GO Slim term 'cell cycle ; GO:0007049'
+ GO:0000731, DNA synthesis during DNA repair
+ GO:0000734, gene conversion at MAT locus, DNA repair synthesis
+ GO:0006288, base-excision repair, DNA ligation
Terms movements under GO Slim term 'signal transduction ; GO:0007165'
+ GO:0001402, signal transduction during filamentous growth
Terms movements under GO Slim term 'development ; GO:0007275'
+ GO:0000707, meiotic DNA recombinase assembly
+ GO:0001710, mesoderm cell fate commitment
- GO:0006309, DNA fragmentation
+ GO:0007146, meiotic recombination nodule assembly
+ GO:0007501, mesoderm cell fate specification
- GO:0009825, cell expansion
- GO:0009826, cell elongation
- GO:0009831, cell wall modification during cell expansion (sensu Magnoliophyta)
+ GO:0009912, hair cell fate commitment
+ GO:0009913, epidermal cell differentiation
+ GO:0009999, negative regulation of hair cell fate specification
- GO:0010153, polar cell elongation
- GO:0010191, mucilage metabolism
- GO:0010192, mucilage biosynthesis
+ GO:0030307, positive regulation of cell growth
+ GO:0030308, negative regulation of cell growth
+ GO:0030316, osteoclast differentiation
+ GO:0042139, early meiotic recombination nodule assembly
+ GO:0042140, late meiotic recombination nodule assembly
+ GO:0042491, auditory hair cell differentiation
- GO:0042547, cell wall modification during cell expansion
+ GO:0042661, regulation of mesoderm cell fate specification
+ GO:0042662, negative regulation of mesoderm cell fate specification
+ GO:0042667, hair cell fate specification
+ GO:0042668, hair cell fate determination
+ GO:0042669, regulation of hair cell fate specification
- GO:0042814, monopolar cell growth
- GO:0042815, bipolar cell growth
+ GO:0045604, regulation of epidermal cell differentiation
+ GO:0045605, negative regulation of epidermal cell differentiation
+ GO:0045606, positive regulation of epidermal cell differentiation
+ GO:0045607, regulation of hair cell differentiation
+ GO:0045608, negative regulation of hair cell differentiation
+ GO:0045609, positive regulation of hair cell differentiation
+ GO:0045670, regulation of osteoclast differentiation
+ GO:0045671, negative regulation of osteoclast differentiation
+ GO:0045672, positive regulation of osteoclast differentiation
Terms movements under GO Slim term 'physiological process ; GO:0007582'
- GO:0010191, mucilage metabolism
- GO:0010192, mucilage biosynthesis
Terms movements under GO Slim term 'biological_process ; GO:0008150'
- GO:0009825, cell expansion
- GO:0009826, cell elongation
- GO:0009831, cell wall modification during cell expansion (sensu Magnoliophyta)
- GO:0010153, polar cell elongation
- GO:0042547, cell wall modification during cell expansion
- GO:0042814, monopolar cell growth
- GO:0042815, bipolar cell growth
- GO:0045592, regulation of ovarian cumulus cell differentiation
- GO:0045593, negative regulation of ovarian cumulus cell differentiation
- GO:0045594, positive regulation of ovarian cumulus cell differentiation
Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628'
- GO:0009649, entrainment of circadian clock
Terms movements under GO Slim term 'response to endogenous stimulus ; GO:0009719'
+ GO:0000707, meiotic DNA recombinase assembly
+ GO:0000711, meiotic DNA repair synthesis
+ GO:0000734, gene conversion at MAT locus, DNA repair synthesis
+ GO:0007146, meiotic recombination nodule assembly
+ GO:0042139, early meiotic recombination nodule assembly
+ GO:0042140, late meiotic recombination nodule assembly
Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043'
- GO:0009825, cell expansion
- GO:0009826, cell elongation
- GO:0010153, polar cell elongation
+ GO:0030307, positive regulation of cell growth
+ GO:0030308, negative regulation of cell growth
- GO:0042814, monopolar cell growth
- GO:0042815, bipolar cell growth
Terms movements under GO Slim term 'cell growth ; GO:0016049'
- GO:0001544, initiation of primordial ovarian follicle growth
- GO:0001545, primary ovarian follicle growth
- GO:0001546, preantral ovarian follicle growth
- GO:0001547, antral ovarian follicle growth
- GO:0001548, ovarian follicle antrum/follicular fluid formation
- GO:0001549, ovarian cumulus cell differentiation
- GO:0001550, ovarian cumulus expansion
- GO:0045592, regulation of ovarian cumulus cell differentiation
- GO:0045593, negative regulation of ovarian cumulus cell differentiation
- GO:0045594, positive regulation of ovarian cumulus cell differentiation
Terms movements under GO Slim term 'cell differentiation ; GO:0030154'
- GO:0010191, mucilage metabolism
- GO:0010192, mucilage biosynthesis
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
713997 Fixed tubulin folding is not a child of protein folding [none]
763419 Out of Date revisions to child terms of 'cell growth and maintenance' [none]
816515 Fixed GO:0007165 : signal transduction (new def) [none]
822620 None various chromosome segregation/ sister chromatid separation [none]
822629 Fixed homologous chromosome pairing at meiosis GO:0051026
822657 Works For Me M phase of meiotic cell cycle [none]
827566 Fixed Development Terms vol. 2 [none]
843729 Fixed actin defs GO:0051014 GO:0051016-51017
850660 Accepted relationship between cell size and cell growth [none]
854736 Accepted hindbrain development GO:0030900-30902
864647 Accepted types of protein phosphatase reactions GO:0030945-30946
881598 Works For Me is a lipid particle an instance of a cytoplasmic vesicle? [none]
886203 Fixed Def change: molecular_function ; GO:0003674 [none]
903114 Fixed True path violation in Process GO:0043150-43151
905801 Accepted induction of bacterial agglutination GO:0043152
916873 Fixed GO:0010162 : seed dormancy [none]
918400 None new complex term:SWR1 complex GO:0000812
919710 Accepted ADPG pyrophosphorylase complex (GO:new) GO:0030929-30933
923620 Fixed GO:0009512 : cytochrome b6f complex [none]
925548 Works For Me extrusion after meiotic divisions true path violation [none]
926271 Duplicate New definitions from SGD [none]
926576 Fixed monooxygenases- synonyms and parentage [none]
928319 Accepted late endosome synonyms [none]
928541 Fixed Phagocytosis Definitions and Term Changes GO:0001845-01864
929793 Accepted exon-exon junction complex GO:0035145
929943 Fixed GO:0010191 mucilage metabolism GO:0048354-48364
930407 Fixed GO:0000923 equatorial mitotic organizing center?? [none]
930412 Works For Me gamma-tubulin large complex (sensu Schizosaccharomyces) [none]
930438 Accepted actomyosin ring vs. contractile ring [none]
931045 Accepted EASY: GDI binding GO:0051020-51022
931073 Fixed Term merge: deoxycytidyl transferases [none]
931127 None new terms: tube fusion, lumen formation etc GO:0035146-35160
931670 Fixed collagen GO:0030934-30938
932089 Fixed trichome differentiation GO:0048271 [none]
934347 Fixed merge two terms [none]
934796 Accepted DNA replication defs [none]
934878 Accepted Add Syn: palmitoyl-(protein) hydrolase activity [none]
934991 Accepted platelet-activating factor acetyltransferase activity [none]
935070 Accepted modify relations between otic ves./plac. form. terms [none]
935116 None annotation Qu: chaperone regulator/co-chaperone [none]
935371 Accepted instances of response to photoperiod GO:0030939-30940
935636 Fixed entrainment of circadian clock (8) GO:0043153
935931 Fixed primary endosperm nucleus GO:0048353
936340 Duplicate query vacuolar transport (TPV) [none]
936360 Accepted Synonym for gastrin receptor activity [none]
937039 Works For Me annoation query GTPase activator [none]
938014 Accepted GO:0046509 synonym [none]
938713 Fixed water homeostatis path question GO:0043154-43155
939313 Works For Me interstrand crosslink repair [none]
939390 Accepted chloroplast envelope (GO:0009941) [none]
940146 Accepted NTR: chromatin remodeling in response to cation stress GO:0043156-43157
942189 Accepted definitions and extra parentage for spermatogenesis terms [none]
942220 Accepted Rac GTPase binding GO:0048365
943338 Accepted change definition of GO:0019898 'extrinsic to membrane'? [none]
Statistics:
Component: 1407 terms, 88.4% defined (1244 terms defined)
Function: 7337 terms, 88.0% defined (6460 terms defined)
Process: 8629 terms, 92.2% defined (7952 terms defined)
Total: 17373 terms, 90.1% defined (15656 terms defined)
Term errors
none