GO Monthly Release Notes for March 2004
========================
Generated on Mon Apr 5 16:01:08 2004
Files used:
component old: 2.454 new: 1.28
function old: 2.968 new: 1.28
process old: 2.1172 new: 1.28
definitions old: 2.1700 new: 1.28
GO Slim: Generic.0208
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in component ontology (2 new terms)
GO:0030914 GO:0005654 MAH D 918040 STAGA complex
GO:0030915 GO:0005694 MAH D 900278 Smc5-Smc6 complex
New definitions for component ontology terms (29 new definitions)
GO:0000108, repairosome
GO:0000109, nucleotide excision repair complex
GO:0000110, nucleotide excision repair factor 1 complex
GO:0000111, nucleotide excision repair factor 2 complex
GO:0000112, nucleotide excision repair factor 3 complex
GO:0000113, nucleotide excision repair factor 4 complex
GO:0000118, histone deacetylase complex
GO:0000123, histone acetyltransferase complex
GO:0000125, PCAF complex
GO:0000136, mannosyltransferase complex
GO:0000311, plastid large ribosomal subunit
GO:0000312, plastid small ribosomal subunit
GO:0000313, organellar ribosome
GO:0000314, organellar small ribosomal subunit
GO:0000315, organellar large ribosomal subunit
GO:0005667, transcription factor complex
GO:0005671, Ada2/Gcn5/Ada3 transcription activator complex
GO:0005721, centric heterochromatin
GO:0005722, beta-heterochromatin
GO:0005723, alpha-heterochromatin
GO:0005725, intercalary heterochromatin
GO:0005726, perichromatin fibrils
GO:0005762, mitochondrial large ribosomal subunit
GO:0005763, mitochondrial small ribosomal subunit
GO:0005770, late endosome
GO:0005771, multivesicular body
GO:0005787, signal peptidase complex
GO:0005832, chaperonin-containing T-complex
GO:0005835, fatty-acid synthase complex
New term merges in component ontology
GO:0000141 has been merged into GO:0030482, actin cable (sensu Fungi)
GO:0000143 has been merged into GO:0030478, actin cap (sensu Fungi)
GO:0005857 has been merged into GO:0030479, actin cortical patch (sensu Fungi)
Term movements in component ontology:
Terms movements under GO Slim term 'cell ; GO:0005623'
+ GO:0005787, signal peptidase complex
Terms movements under GO Slim term 'lysosome ; GO:0005764'
- GO:0005771, multivesicular body
Terms movements under GO Slim term 'endosome ; GO:0005768'
+ GO:0005771, multivesicular body
New terms in function ontology (18 new terms)
GO:0010210 GO:0003824 TAIR D IAA-Phe conjugate hydrolase activity
GO:0010211 GO:0003824 TAIR D IAA-Leu conjugate hydrolase activity
GO:0030911 GO:0005515 MAH D 914866 TPR domain binding
GO:0043120 GO:0005515 JL D 893781 tumor necrosis factor binding
GO:0043121 GO:0005515 JL D 893781 neurotrophin binding
GO:0043125 GO:0005102 JL D ErbB-3 class receptor binding
GO:0043130 GO:0005515 JL D 910380 ubiquitin binding
GO:0048306 GO:0005515 JIC D 903533 calcium-dependent protein binding
GO:0048307 GO:0003824 JIC D 905787 ferredoxin-nitrite reductase activity
GO:0050997 GO:0005488 AI D 917628 quatenary ammonium group binding
GO:0050998 GO:0005515 AI D 900483 nitric-oxide synthase binding
GO:0051002 GO:0003824 AI D 896732 ligase activity, forming nitrogen-metal bonds
GO:0051003 GO:0003824 AI D 896732 ligase activity, forming nitrogen-metal bonds, forming coordination complexes
GO:0051007 GO:0003824 AI D 896732 squalene-hopene cyclase activity
GO:0051008 GO:0005515 AI D Hsp27 protein binding
GO:0051009 GO:0003824 AI D 896732 O-acetylhomoserine sulfhydrylase activity
GO:0051010 GO:0008092 AI D 921670 microtubule plus-end binding
GO:0051011 GO:0008092 AI D 921670 microtubule minus-end binding
New obsoletions in function ontology
GO:0003790, actin modulating activity: does not make sense.
GO:0005012, Neu/ErbB-2 receptor activity: represents a class of receptor rather than an activity.
GO:0005027, NGF/TNF (6 C-domain) receptor activity: represents a protein family rather than a molecular function.
GO:0008141, puparial glue (sensu Diptera): represents a gene product and not a molecular function.
GO:0008492, cAMP generating peptide activity: describes a gene product.
GO:0009984, adenylate forming enzyme activity: does not refer to a specific reaction but rather to a process which results in the formation of AMP.
GO:0016343, cytoskeletal anchoring activity: represents a biological process.
GO:0016626, oxidoreductase activity, acting on the aldehyde or oxo group of donors, other acceptors: was an unnecessary grouping term.
GO:0016637, oxidoreductase activity, acting on the CH-CH group of donors, other acceptors: was an unnecessary grouping term.
GO:0016644, oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors: was an unnecessary grouping term.
GO:0016650, oxidoreductase activity, acting on the CH-NH group of donors, other acceptors: was an unnecessary grouping term.
GO:0016659, oxidoreductase activity, acting on NADH or NADPH, other acceptor: was an unnecessary grouping term.
GO:0016665, oxidoreductase activity, acting on other nitrogenous compounds as donors, other acceptors: was an unnecessary grouping term.
GO:0016674, oxidoreductase activity, acting on sulfur group of donors, other acceptors: was an unnecessary grouping term.
GO:0016678, oxidoreductase activity, acting on heme group of donors, other acceptors: was an unnecessary grouping term.
GO:0016683, oxidoreductase activity, acting on diphenols and related substances as donors, other acceptors: was an unnecessary grouping term.
GO:0016700, oxidoreductase activity, acting on hydrogen as donor, other acceptors: was an unnecessary grouping term.
GO:0016704, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, miscellaneous: was an unnecessary grouping term.
GO:0016718, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, miscellaneous: was an unnecessary grouping term.
GO:0016729, oxidoreductase activity, acting on CH2 groups, other acceptors: was an unnecessary grouping term.
GO:0016739, oxidoreductase activity, acting on other substrates: was an unnecessary grouping term.
GO:0016764, transferase activity, transferring other glycosyl groups: was an unnecessary grouping term.
GO:0016771, transferase activity, transferring other nitrogenous groups: was an unnecessary grouping term.
GO:0016816, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in other compounds: was an unnecessary grouping term.
GO:0016834, other carbon-carbon lyase activity: was an unnecessary grouping term.
GO:0016839, other carbon-oxygen lyase activity: was an unnecessary grouping term.
GO:0016845, other carbon-nitrogen lyase activity: was an unnecessary grouping term.
GO:0016850, other lyase activity: was an unnecessary grouping term.
GO:0016858, racemase and epimerase activity, acting on other compounds: was an unnecessary grouping term.
GO:0016865, intramolecular oxidoreductase activity, other intramolecular oxidoreductases: was an unnecessary grouping term.
GO:0016870, intramolecular transferase activity, transferring other groups: was an unnecessary grouping term.
GO:0016873, other isomerase activity: was an unnecessary grouping term.
GO:0016883, other carbon-nitrogen ligase activity: was an unnecessary grouping term.
GO:0016902, oxidoreductase activity, acting on the CH-OH group of donors, other acceptors: was an unnecessary grouping term.
GO:0050466, oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with other acceptors: was an unnecessary grouping term.
GO:0050523, oxidoreductase activity, acting on phosphorus or arsenic in donors, with other acceptors: was an unnecessary grouping term.
Term name changes in function ontology
GO:0005030: neurotrophin p75 receptor activity --> neurotrophin receptor activity
GO:0005176: Neu/ErbB-2 receptor binding --> ErbB-2 class receptor binding
GO:0008702: 5,10-methylenetetrahydrofolate reductase (FADH) activity --> 5,10-methylenetetrahydrofolate reductase (FADH2) activity
GO:0015418: quaternary-amine-transporting ATPase activity --> quaternary-ammonium-compound-transporting ATPase activity
GO:0016731: oxidoreductase activity, acting on reduced ferredoxin as donor, NAD or NADP as acceptor --> oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor
GO:0016732: oxidoreductase activity, acting on reduced ferredoxin as donor, dinitrogen as acceptor --> oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor
GO:0016860: intramolecular isomerase activity --> intramolecular oxidoreductase activity
GO:0016861: intramolecular isomerase activity, interconverting aldoses and ketoses --> intramolecular oxidoreductase activity, interconverting aldoses and ketoses
GO:0016862: intramolecular isomerase activity, interconverting keto- and enol-groups --> intramolecular oxidoreductase activity, interconverting keto- and enol-groups
GO:0016863: intramolecular isomerase activity, transposing C=C bonds --> intramolecular oxidoreductase activity, transposing C=C bonds
GO:0016864: intramolecular isomerase activity, transposing S-S bonds --> intramolecular oxidoreductase activity, transposing S-S bonds
GO:0016865: intramolecular isomerase activity, other intramolecular oxidoreductases --> intramolecular oxidoreductase activity, other intramolecular oxidoreductases
GO:0016889: endodeoxyribonuclease activity, producing other than 5'-phosphomonoesters --> endodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0016892: endoribonuclease activity, producing other than 5'-phosphomonoesters --> endoribonuclease activity, producing 3'-phosphomonoesters
GO:0017058: FH1-domain binding --> FH1 domain binding
GO:0017124: SH3-domain binding --> SH3 domain binding
GO:0019110: oxidoreductase activity, acting on reduced ferredoxin as donor, hydrogen ions as acceptor --> oxidoreductase activity, acting on iron-sulfur proteins as donors, hydrogen ions as acceptor
GO:0019171: 3-hydroxyacyl-ACP dehydratase activity --> 3-hydroxyacyl-[acyl-carrier protein] dehydratase activity
GO:0030165: PDZ-domain binding --> PDZ domain binding
GO:0030274: LIM-domain binding --> LIM domain binding
GO:0030275: LRR-domain binding --> LRR domain binding
GO:0042169: SH2-domain binding --> SH2 domain binding
GO:0042731: PH-domain binding --> PH domain binding
GO:0047151: methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH-oxidizing) activity --> methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing) activity
New definitions for function ontology terms (88 new definitions)
GO:0000009, alpha-1,6-mannosyltransferase activity
GO:0000014, single-stranded DNA specific endodeoxyribonuclease activity
GO:0000026, alpha-1,2-mannosyltransferase activity
GO:0000033, alpha-1,3-mannosyltransferase activity
GO:0003692, left-handed Z-DNA binding
GO:0003695, random coil DNA binding
GO:0003790, actin modulating activity
GO:0003909, DNA ligase activity
GO:0004376, glycolipid mannosyltransferase activity
GO:0005012, Neu/ErbB-2 receptor activity
GO:0005027, NGF/TNF (6 C-domain) receptor activity
GO:0005030, neurotrophin receptor activity
GO:0005031, tumor necrosis factor receptor activity
GO:0008492, cAMP generating peptide activity
GO:0015067, amidinotransferase activity
GO:0016291, acyl-CoA thioesterase activity
GO:0016620, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0016622, oxidoreductase activity, acting on the aldehyde or oxo group of donors, cytochrome as acceptor
GO:0016623, oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor
GO:0016624, oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GO:0016625, oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor
GO:0016626, oxidoreductase activity, acting on the aldehyde or oxo group of donors, other acceptors
GO:0016628, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
GO:0016632, oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor
GO:0016634, oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
GO:0016635, oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor
GO:0016636, oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor
GO:0016637, oxidoreductase activity, acting on the CH-CH group of donors, other acceptors
GO:0016644, oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors
GO:0016646, oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor
GO:0016647, oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor
GO:0016648, oxidoreductase activity, acting on the CH-NH group of donors, disulfide as acceptor
GO:0016649, oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor
GO:0016650, oxidoreductase activity, acting on the CH-NH group of donors, other acceptors
GO:0016659, oxidoreductase activity, acting on NADH or NADPH, other acceptor
GO:0016662, oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor
GO:0016663, oxidoreductase activity, acting on other nitrogenous compounds as donors, oxygen as acceptor
GO:0016664, oxidoreductase activity, acting on other nitrogenous compounds as donors, iron-sulfur protein as acceptor
GO:0016665, oxidoreductase activity, acting on other nitrogenous compounds as donors, other acceptors
GO:0016668, oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
GO:0016669, oxidoreductase activity, acting on sulfur group of donors, cytochrome as acceptor
GO:0016670, oxidoreductase activity, acting on sulfur group of donors, oxygen as acceptor
GO:0016671, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0016672, oxidoreductase activity, acting on sulfur group of donors, quinone or similar compound as acceptor
GO:0016673, oxidoreductase activity, acting on sulfur group of donors, iron-sulfur protein as acceptor
GO:0016674, oxidoreductase activity, acting on sulfur group of donors, other acceptors
GO:0016676, oxidoreductase activity, acting on heme group of donors, oxygen as acceptor
GO:0016677, oxidoreductase activity, acting on heme group of donors, nitrogenous group as acceptor
GO:0016678, oxidoreductase activity, acting on heme group of donors, other acceptors
GO:0016680, oxidoreductase activity, acting on diphenols and related substances as donors, NAD or NADP as acceptor
GO:0016681, oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor
GO:0016682, oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016683, oxidoreductase activity, acting on diphenols and related substances as donors, other acceptors
GO:0016695, oxidoreductase activity, acting on hydrogen as donor
GO:0016696, oxidoreductase activity, acting on hydrogen as donor, NAD or NADP as acceptor
GO:0016697, oxidoreductase activity, acting on hydrogen as donor, cytochrome as acceptor
GO:0016699, oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
GO:0016700, oxidoreductase activity, acting on hydrogen as donor, other acceptors
GO:0016704, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, miscellaneous
GO:0016718, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, miscellaneous
GO:0016729, oxidoreductase activity, acting on CH2 groups, other acceptors
GO:0016731, oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor
GO:0016732, oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor
GO:0016738, oxidoreductase activity, acting on reduced flavodoxin as donor, dinitrogen as acceptor
GO:0016739, oxidoreductase activity, acting on other substrates
GO:0016770, oximinotransaminase activity
GO:0016771, transferase activity, transferring other nitrogenous groups
GO:0016789, carboxylic ester hydrolase activity
GO:0016834, other carbon-carbon lyase activity
GO:0016850, other lyase activity
GO:0016858, racemase and epimerase activity, acting on other compounds
GO:0016865, intramolecular oxidoreductase activity, other intramolecular oxidoreductases
GO:0016870, intramolecular transferase activity, transferring other groups
GO:0016873, other isomerase activity
GO:0016883, other carbon-nitrogen ligase activity
GO:0016902, oxidoreductase activity, acting on the CH-OH group of donors, other acceptors
GO:0019110, oxidoreductase activity, acting on iron-sulfur proteins as donors, hydrogen ions as acceptor
GO:0019187, beta-1,4-mannosyltransferase activity
GO:0046857, oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor
GO:0046992, oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond
GO:0046993, oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor
GO:0046994, oxidoreductase activity, acting on hydrogen as donor, with a quinone or similar compound as acceptor
GO:0046995, oxidoreductase activity, acting on hydrogen as donor, with other known acceptors
GO:0046997, oxidoreductase activity, acting on the CH-NH group of donors, with a flavin as acceptor
GO:0050466, oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with other acceptors
GO:0050485, oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor
GO:0050522, oxidoreductase activity, acting on phosphorus or arsenic in donors, with other known acceptors
GO:0050523, oxidoreductase activity, acting on phosphorus or arsenic in donors, with other acceptors
New term merges in function ontology
GO:0016225 has been merged into GO:0004123, cystathionine gamma-lyase activity
GO:0016736 has been merged into GO:0019110, oxidoreductase activity, acting on iron-sulfur proteins as donors, hydrogen ions as acceptor
Term movements in function ontology:
Terms movements under GO Slim term 'actin binding ; GO:0003779'
- GO:0003790, actin modulating activity
Terms movements under GO Slim term 'catalytic activity ; GO:0003824'
- GO:0009984, adenylate forming enzyme activity
- GO:0016626, oxidoreductase activity, acting on the aldehyde or oxo group of donors, other acceptors
- GO:0016637, oxidoreductase activity, acting on the CH-CH group of donors, other acceptors
- GO:0016644, oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors
- GO:0016650, oxidoreductase activity, acting on the CH-NH group of donors, other acceptors
- GO:0016659, oxidoreductase activity, acting on NADH or NADPH, other acceptor
- GO:0016665, oxidoreductase activity, acting on other nitrogenous compounds as donors, other acceptors
- GO:0016674, oxidoreductase activity, acting on sulfur group of donors, other acceptors
- GO:0016678, oxidoreductase activity, acting on heme group of donors, other acceptors
- GO:0016683, oxidoreductase activity, acting on diphenols and related substances as donors, other acceptors
- GO:0016700, oxidoreductase activity, acting on hydrogen as donor, other acceptors
- GO:0016704, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, miscellaneous
- GO:0016718, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, miscellaneous
- GO:0016729, oxidoreductase activity, acting on CH2 groups, other acceptors
- GO:0016739, oxidoreductase activity, acting on other substrates
- GO:0016764, transferase activity, transferring other glycosyl groups
- GO:0016771, transferase activity, transferring other nitrogenous groups
- GO:0016816, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in other compounds
- GO:0016834, other carbon-carbon lyase activity
- GO:0016839, other carbon-oxygen lyase activity
- GO:0016845, other carbon-nitrogen lyase activity
- GO:0016850, other lyase activity
- GO:0016858, racemase and epimerase activity, acting on other compounds
- GO:0016865, intramolecular oxidoreductase activity, other intramolecular oxidoreductases
- GO:0016870, intramolecular transferase activity, transferring other groups
- GO:0016873, other isomerase activity
- GO:0016883, other carbon-nitrogen ligase activity
- GO:0016902, oxidoreductase activity, acting on the CH-OH group of donors, other acceptors
- GO:0050466, oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with other acceptors
- GO:0050523, oxidoreductase activity, acting on phosphorus or arsenic in donors, with other acceptors
Terms movements under GO Slim term 'protein kinase activity ; GO:0004672'
- GO:0005012, Neu/ErbB-2 receptor activity
Terms movements under GO Slim term 'receptor activity ; GO:0004872'
- GO:0005012, Neu/ErbB-2 receptor activity
- GO:0005027, NGF/TNF (6 C-domain) receptor activity
Terms movements under GO Slim term 'receptor binding ; GO:0005102'
- GO:0008492, cAMP generating peptide activity
Terms movements under GO Slim term 'structural molecule activity ; GO:0005198'
- GO:0008141, puparial glue (sensu Diptera)
Terms movements under GO Slim term 'protein binding ; GO:0005515'
+ GO:0005013, neurotrophin TRK receptor activity
+ GO:0005014, neurotrophin TRKA receptor activity
+ GO:0005015, neurotrophin TRKB receptor activity
+ GO:0005016, neurotrophin TRKC receptor activity
+ GO:0005030, neurotrophin receptor activity
+ GO:0005031, tumor necrosis factor receptor activity
Terms movements under GO Slim term 'cytoskeletal protein binding ; GO:0008092'
- GO:0016343, cytoskeletal anchoring activity
New terms in process ontology (106 new terms)
GO:0001837 GO:0007275 MGI D epithelial to mesenchymal transition
GO:0030154
GO:0001838 GO:0007275 MGI D embryonic epithelial tube formation
GO:0001839 GO:0007275 MGI D neural plate morphogenesis
GO:0001840 GO:0007275 MGI D neural plate formation
GO:0001841 GO:0007275 MGI D neural tube formation
GO:0001842 GO:0007275 MGI D neural fold formation
GO:0001843 GO:0007275 MGI D neural tube closure
GO:0001844 GO:0008219 MGI D insertion of proteins into mitochondrial membranes during the induction of apoptosis
GO:0030908 GO:0006464 MAH D 912316 protein splicing
GO:0030909 GO:0006464 MAH D 912316 non-intein-mediated protein splicing
GO:0030910 GO:0007275 MAH D 886590 olfactory placode formation
GO:0030912 GO:0009628 MAH D 917492 response to deep water
GO:0030913 GO:0007028 MAH D 897873 paranodal junction formation
GO:0007275
GO:0030916 GO:0007275 MAH D 921285 otic vesicle formation
GO:0030917 GO:0007275 MAH D 921380 midbrain-hindbrain boundary development
GO:0030918 GO:0008152 MAH D 921615 microRNA processing
GO:0035106 GO:0007610 FB D 909874 operant conditioning
GO:0035107 GO:0007275 FB D 871554 appendage morphogenesis
GO:0035108 GO:0007275 FB D 871554 limb morphogenesis
GO:0035109 GO:0007275 FB D 871554 limb morphogenesis (sensu Holometabola)
GO:0035110 GO:0007275 FB D 871554 leg morphogenesis
GO:0035111 GO:0007275 FB D 871554 leg joint morphogenesis
GO:0035112 GO:0007275 FB D 871554 genital morphogenesis
GO:0035113 GO:0007275 FB D 871554 embryonic appendage morphogenesis
GO:0035114 GO:0007275 FB D 871554 appendage morphogenesis (sensu Holometabola)
GO:0035115 GO:0007275 FB D 871554 embryonic forelimb morphogenesis
GO:0035116 GO:0007275 FB D 871554 embryonic hindlimb morphogenesis
GO:0035117 GO:0007275 FB D 871554 embryonic arm morphogenesis
GO:0035118 GO:0007275 FB D 871554 embryonic pectoral fin morphogenesis
GO:0035119 GO:0007275 FB D 871554 embryonic pelvic fin morphogenesis
GO:0035120 GO:0007275 FB D 871554 post-embryonic appendage morphogenesis
GO:0035121 GO:0007275 FB D 871554 tail morphogenesis
GO:0035122 GO:0007275 FB D 871554 embryonic medial fin morphogenesis
GO:0035123 GO:0007275 FB D 871554 embryonic dorsal fin morphogenesis
GO:0035124 GO:0007275 FB D 871554 embryonic caudal fin morphogenesis
GO:0035125 GO:0007275 FB D 871554 embryonic anal fin morphogenesis
GO:0035126 GO:0007275 FB D 871554 post-embryonic genital morphogenesis
GO:0035127 GO:0007275 FB D 871554 post-embryonic limb morphogenesis
GO:0035128 GO:0007275 FB D 871554 post-embryonic forelimb morphogenesis
GO:0035129 GO:0007275 FB D 871554 post-embryonic hindlimb morphogenesis
GO:0035130 GO:0007275 FB D 871554 post-embryonic pectoral fin morphogenesis
GO:0035131 GO:0007275 FB D 871554 post-embryonic pelvic fin morphogenesis
GO:0035132 GO:0007275 FB D 871554 post-embryonic medial fin morphogenesis
GO:0035133 GO:0007275 FB D 871554 post-embryonic caudal fin morphogenesis
GO:0035134 GO:0007275 FB D 871554 post-embryonic dorsal fin morphogenesis
GO:0035135 GO:0007275 FB D 871554 post-embryonic anal fin morphogenesis
GO:0035136 GO:0007275 FB D forelimb morphogenesis
GO:0035137 GO:0007275 FB D hindlimb morphogenesis
GO:0035138 GO:0007275 FB D pectoral fin morphogenesis
GO:0035139 GO:0007275 FB D pelvic fin morphogenesis
GO:0035140 GO:0007275 FB D arm morphogenesis
GO:0035141 GO:0007275 FB D medial fin morphogenesis
GO:0035142 GO:0007275 FB D dorsal fin morphogenesis
GO:0035143 GO:0007275 FB D caudal fin morphogenesis
GO:0035144 GO:0007275 FB D anal fin morphogenesis
GO:0043116 GO:0007582 JL D 839984 negative regulation of vascular permeability
GO:0008150
GO:0043117 GO:0007582 JL D 839984 positive regulation of vascular permeability
GO:0008150
GO:0043118 GO:0007582 JL D negative regulation of physiological process
GO:0008150
GO:0043119 GO:0007582 JL D positive regulation of physiological process
GO:0008150
GO:0043122 GO:0007165 JL D 908967 regulation of I-kappaB kinase/NF-kappaB cascade
GO:0008150
GO:0043123 GO:0007165 JL D 908967 positive regulation of I-kappaB kinase/NF-kappaB cascade
GO:0008150
GO:0043124 GO:0007165 JL D 908967 negative regulation of I-kappaB kinase/NF-kappaB cascade
GO:0008150
GO:0043126 GO:0008150 JL D 902649 regulation of 1-phosphatidylinositol 4-kinase activity
GO:0043127 GO:0008150 JL D 902649 negative regulation of 1-phosphatidylinositol 4-kinase activity
GO:0043128 GO:0008150 JL D 902649 positive regulation of 1-phosphatidylinositol 4-kinase activity
GO:0043129 GO:0007582 JL D 904106 surfactant homeostasis
GO:0043131 GO:0007275 JL D 864579 enucleation
GO:0030154
GO:0043133 GO:0007582 JL D 837771 hindgut contraction
GO:0008150
GO:0043134 GO:0007582 JL D 837771 regulation of hindgut contraction
GO:0008150
GO:0048289 GO:0007582 JIC D 839836 isotype switching to IgE isotypes
GO:0008150
GO:0009607
GO:0048290 GO:0007582 JIC D 839836 isotype switching to IgA isotypes
GO:0008150
GO:0009607
GO:0048291 GO:0007582 JIC D 839836 isotype switching to IgG isotypes
GO:0008150
GO:0009607
GO:0048292 GO:0007582 JIC D 839836 isotype switching to IgD isotypes
GO:0008150
GO:0009607
GO:0048293 GO:0007582 JIC D 839836 regulation of isotype switching to IgE isotypes
GO:0008150
GO:0009607
GO:0048294 GO:0007582 JIC D 839836 negative regulation of isotype switching to IgE isotypes
GO:0008150
GO:0009607
GO:0048295 GO:0007582 JIC D 839836 positive regulation of isotype switching to IgE isotypes
GO:0008150
GO:0009607
GO:0048296 GO:0007582 JIC D 839836 regulation of isotype switching to IgA isotypes
GO:0008150
GO:0009607
GO:0048297 GO:0007582 JIC D 839836 negative regulation of isotype switching to IgA isotypes
GO:0008150
GO:0009607
GO:0048298 GO:0007582 JIC D 839836 positive regulation of isotype switching to IgA isotypes
GO:0008150
GO:0009607
GO:0048299 GO:0007582 JIC D 839836 regulation of isotype switching to IgD isotypes
GO:0008150
GO:0009607
GO:0048300 GO:0007582 JIC D 839836 negative regulation of isotype switching to IgD isotypes
GO:0008150
GO:0009607
GO:0048301 GO:0007582 JIC D 839836 positive regulation of isotype switching to IgD isotypes
GO:0008150
GO:0009607
GO:0048302 GO:0007582 JIC D 839836 regulation of isotype switching to IgG isotypes
GO:0008150
GO:0009607
GO:0048303 GO:0007582 JIC D 839836 negative regulation of isotype switching to IgG isotypes
GO:0008150
GO:0009607
GO:0048304 GO:0007582 JIC D 839836 positive regulation of isotype switching to IgG isotypes
GO:0008150
GO:0009607
GO:0048305 GO:0006950 JIC D 839836 immunoglobulin secretion
GO:0007582
GO:0009607
GO:0048308 GO:0006996 JIC D 895083 organelle inheritance
GO:0048309 GO:0006996 JIC D 895083 endoplasmic reticulum inheritance
GO:0048310 GO:0006996 JIC D 895083 nucleus inheritance
GO:0016043
GO:0048311 GO:0007005 JIC D 895083 mitochondrion distribution
GO:0048312 GO:0007005 JIC D 895083 mitochondrion positioning within the cell
GO:0048313 GO:0006996 JIC D 895083 Golgi inheritance
GO:0048314 GO:0007275 JIC D embryo sac morphogenesis
GO:0048315 GO:0007582 JIC D 733187 conidium formation
GO:0008150
GO:0030154
GO:0048316 GO:0007275 JIC D seed development
GO:0048317 GO:0007275 JIC D seed morphogenesis
GO:0050994 GO:0006629 AI D 914046 regulation of lipid catabolism
GO:0008152
GO:0009056
GO:0050995 GO:0006629 AI D 914046 negative regulation of lipid catabolism
GO:0008152
GO:0009056
GO:0050996 GO:0006629 AI D 914046 positive regulation of lipid catabolism
GO:0008152
GO:0009056
GO:0050999 GO:0008150 AI D 900483 regulation of nitric-oxide synthase activity
GO:0051000 GO:0008150 AI D 900483 positive regulation of nitric-oxide synthase activity
GO:0051001 GO:0008150 AI D 900483 negative regulation of nitric-oxide synthase activity
GO:0051004 GO:0008150 AI D 914051 regulation of lipoprotein lipase activity
GO:0051005 GO:0008150 AI D 914051 negative regulation of lipoprotein lipase activity
GO:0051006 GO:0008150 AI D 914051 positive regulation of lipoprotein lipase activity
GO:0051012 GO:0006810 AI D 921696 microtubule sliding
GO:0007010
New obsoletions in process ontology
GO:0000202, MAPKKK cascade during sporulation (sensu Saccharomyces): is a gene product specific term.
GO:0000203, activation of MAPKKK during sporulation (sensu Saccharomyces): is a gene product specific term.
GO:0000204, activation of MAPKK during sporulation (sensu Saccharomyces): is a gene product specific term.
GO:0000205, activation of MAPK during sporulation (sensu Saccharomyces): is a gene product specific term.
GO:0000206, inactivation of MAPK during sporulation (sensu Saccharomyces): is a gene product specific term.
GO:0000207, nuclear translocation of MAPK during sporulation (sensu Saccharomyces): is a gene product specific term.
GO:0007251, activation of the inhibitor of kappa kinase: its meaning was unclear.
GO:0009858, compatible pollen-pistil interaction: represents a phenotype.
GO:0009869, incompatible pollen-pistil interaction: represents a phenotype.
GO:0009872, gametophytic self-incompatibility: represents a phenotype.
GO:0009874, sporophytic self-incompatibility: represents a phenotype.
GO:0030438, MAPKKK cascade during sporulation (sensu Fungi): is a gene product specific term.
GO:0030439, activation of MAPK during sporulation (sensu Fungi): is a gene product specific term.
GO:0030440, activation of MAPKK during sporulation (sensu Fungi): is a gene product specific term.
GO:0030441, activation of MAPKKK during sporulation (sensu Fungi): is a gene product specific term.
GO:0030442, inactivation of MAPK during sporulation (sensu Fungi): is a gene product specific term.
GO:0030443, nuclear translocation of MAPK during sporulation (sensu Fungi): is a gene product specific term.
Term name changes in process ontology
GO:0000079: regulation of CDK activity --> regulation of cyclin dependent protein kinase activity
GO:0007249: NIK-I-kappaB/NF-kappaB cascade --> I-kappaB kinase/NF-kappaB cascade
GO:0007281: germ-cell development --> germ cell development
GO:0008354: germ-cell migration --> germ cell migration
GO:0009856: post-pollination --> interaction between male gametophyte and female floral organs
GO:0016539: protein splicing --> intein-mediated protein splicing
GO:0019950: SMT3-dependent protein catabolism --> Smt3-dependent protein catabolism
GO:0019951: SMT3-protein conjugation --> Smt3-protein conjugation
GO:0030326: limb morphogenesis --> embryonic limb morphogenesis
GO:0030538: genital morphogenesis --> embryonic genital morphogenesis
GO:0042733: digit morphogenesis --> embryonic digit morphogenesis
GO:0045736: negative regulation of CDK activity --> negative regulation of cyclin dependent protein kinase activity
GO:0045737: positive regulation of CDK activity --> positive regulation of cyclin dependent protein kinase activity
GO:0046590: leg morphogenesis --> embryonic leg morphogenesis
GO:0046591: leg joint morphogenesis --> embryonic leg joint morphogenesis
GO:0050834: molybdenum incorporation via L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide --> molybdenum incorporation via L-cysteinyl copper sulfido molybdopterin cytosine dinucleotide
GO:0050842: copper incorporation via L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide --> copper incorporation via L-cysteinyl copper sulfido molybdopterin cytosine dinucleotide
GO:0050942: positive regulation of pigment cell differentation --> positive regulation of pigment cell differentiation
New definitions for process ontology terms (43 new definitions)
GO:0000001, mitochondrion inheritance
GO:0000011, vacuole inheritance
GO:0000280, nuclear division
GO:0006314, intron homing
GO:0006315, homing of group II introns
GO:0006316, movement of group I intron
GO:0006364, rRNA processing
GO:0006464, protein modification
GO:0006509, membrane protein ectodomain proteolysis
GO:0006999, nuclear pore organization and biogenesis
GO:0007000, nucleolus organization and biogenesis
GO:0007249, I-kappaB kinase/NF-kappaB cascade
GO:0007250, activation of NF-kappaB-inducing kinase
GO:0007251, activation of the inhibitor of kappa kinase
GO:0007281, germ cell development
GO:0008354, germ cell migration
GO:0009057, macromolecule catabolism
GO:0009658, chloroplast organization and biogenesis
GO:0009659, leucoplast organization and biogenesis
GO:0009660, amyloplast organization and biogenesis
GO:0009661, chromoplast organization and biogenesis
GO:0009662, etioplast organization and biogenesis
GO:0009664, cell wall organization and biogenesis (sensu Magnoliophyta)
GO:0016180, snRNA processing
GO:0016475, interpretation of nuclear/cytoplasmic ratio
GO:0016485, protein processing
GO:0018032, protein amino acid amidation
GO:0019226, transmission of nerve impulse
GO:0019951, Smt3-protein conjugation
GO:0030438, MAPKKK cascade during sporulation (sensu Fungi)
GO:0030439, activation of MAPK during sporulation (sensu Fungi)
GO:0030440, activation of MAPKK during sporulation (sensu Fungi)
GO:0030441, activation of MAPKKK during sporulation (sensu Fungi)
GO:0030442, inactivation of MAPK during sporulation (sensu Fungi)
GO:0030443, nuclear translocation of MAPK during sporulation (sensu Fungi)
GO:0030466, chromatin silencing at silent mating-type cassette (sensu Fungi)
GO:0043063, intercellular bridge organization and biogenesis
GO:0043112, receptor metabolism
GO:0043113, receptor clustering
GO:0043114, regulation of vascular permeability
GO:0048259, regulation of receptor mediated endocytosis
GO:0048260, positive regulation of receptor mediated endocytosis
GO:0048261, negative regulation of receptor mediated endocytosis
New term merges in process ontology
GO:0006347 has been merged into GO:0030466, chromatin silencing at silent mating-type cassette (sensu Fungi)
GO:0016440 has been merged into GO:0006342, chromatin silencing
Term movements in process ontology:
Terms movements under GO Slim term 'protein modification ; GO:0006464'
+ GO:0000079, regulation of cyclin dependent protein kinase activity
+ GO:0045736, negative regulation of cyclin dependent protein kinase activity
+ GO:0045737, positive regulation of cyclin dependent protein kinase activity
Terms movements under GO Slim term 'transport ; GO:0006810'
- GO:0000207, nuclear translocation of MAPK during sporulation (sensu Saccharomyces)
- GO:0030443, nuclear translocation of MAPK during sporulation (sensu Fungi)
Terms movements under GO Slim term 'organelle organization and biogenesis ; GO:0006996'
+ GO:0000001, mitochondrion inheritance
Terms movements under GO Slim term 'cell communication ; GO:0007154'
- GO:0009858, compatible pollen-pistil interaction
- GO:0009869, incompatible pollen-pistil interaction
- GO:0009872, gametophytic self-incompatibility
- GO:0009874, sporophytic self-incompatibility
Terms movements under GO Slim term 'signal transduction ; GO:0007165'
- GO:0000202, MAPKKK cascade during sporulation (sensu Saccharomyces)
- GO:0000203, activation of MAPKKK during sporulation (sensu Saccharomyces)
- GO:0000204, activation of MAPKK during sporulation (sensu Saccharomyces)
- GO:0000205, activation of MAPK during sporulation (sensu Saccharomyces)
- GO:0000206, inactivation of MAPK during sporulation (sensu Saccharomyces)
- GO:0000207, nuclear translocation of MAPK during sporulation (sensu Saccharomyces)
- GO:0007251, activation of the inhibitor of kappa kinase
- GO:0030438, MAPKKK cascade during sporulation (sensu Fungi)
- GO:0030439, activation of MAPK during sporulation (sensu Fungi)
- GO:0030440, activation of MAPKK during sporulation (sensu Fungi)
- GO:0030441, activation of MAPKKK during sporulation (sensu Fungi)
- GO:0030442, inactivation of MAPK during sporulation (sensu Fungi)
- GO:0030443, nuclear translocation of MAPK during sporulation (sensu Fungi)
Terms movements under GO Slim term 'physiological process ; GO:0007582'
+ GO:0007151, sporulation (sensu Saccharomyces)
+ GO:0007152, spore wall assembly (sensu Saccharomyces)
+ GO:0007153, germination (sensu Saccharomyces)
+ GO:0009554, megasporogenesis
+ GO:0009556, microsporogenesis
- GO:0009857, pollen recognition
- GO:0009858, compatible pollen-pistil interaction
- GO:0009859, pollen hydration
- GO:0009865, pollen tube adhesion
- GO:0009876, pollen adhesion
+ GO:0030435, sporulation
+ GO:0030436, sporulation (sensu Bacteria)
+ GO:0030437, sporulation (sensu Fungi)
+ GO:0030470, spore germination (sensu Fungi)
+ GO:0030476, spore wall assembly (sensu Fungi)
+ GO:0042173, regulation of sporulation
+ GO:0042174, negative regulation of sporulation
+ GO:0042243, spore wall assembly (sensu Bacteria)
+ GO:0042244, spore wall assembly
+ GO:0045881, positive regulation of sporulation
+ GO:0048236, spore development (sensu Magnoliophyta)
Terms movements under GO Slim term 'biological_process ; GO:0008150'
+ GO:0007151, sporulation (sensu Saccharomyces)
+ GO:0007152, spore wall assembly (sensu Saccharomyces)
+ GO:0007153, germination (sensu Saccharomyces)
+ GO:0009554, megasporogenesis
+ GO:0009556, microsporogenesis
+ GO:0030435, sporulation
+ GO:0030436, sporulation (sensu Bacteria)
+ GO:0030437, sporulation (sensu Fungi)
+ GO:0030470, spore germination (sensu Fungi)
+ GO:0030476, spore wall assembly (sensu Fungi)
+ GO:0042243, spore wall assembly (sensu Bacteria)
+ GO:0042244, spore wall assembly
+ GO:0048236, spore development (sensu Magnoliophyta)
Terms movements under GO Slim term 'cell growth and/or maintenance ; GO:0008151'
- GO:0000202, MAPKKK cascade during sporulation (sensu Saccharomyces)
- GO:0000203, activation of MAPKKK during sporulation (sensu Saccharomyces)
- GO:0000204, activation of MAPKK during sporulation (sensu Saccharomyces)
- GO:0000205, activation of MAPK during sporulation (sensu Saccharomyces)
- GO:0000206, inactivation of MAPK during sporulation (sensu Saccharomyces)
- GO:0000207, nuclear translocation of MAPK during sporulation (sensu Saccharomyces)
- GO:0007151, sporulation (sensu Saccharomyces)
- GO:0007152, spore wall assembly (sensu Saccharomyces)
- GO:0007153, germination (sensu Saccharomyces)
- GO:0009554, megasporogenesis
- GO:0009556, microsporogenesis
- GO:0030435, sporulation
- GO:0030436, sporulation (sensu Bacteria)
- GO:0030437, sporulation (sensu Fungi)
- GO:0030438, MAPKKK cascade during sporulation (sensu Fungi)
- GO:0030439, activation of MAPK during sporulation (sensu Fungi)
- GO:0030440, activation of MAPKK during sporulation (sensu Fungi)
- GO:0030441, activation of MAPKKK during sporulation (sensu Fungi)
- GO:0030442, inactivation of MAPK during sporulation (sensu Fungi)
- GO:0030443, nuclear translocation of MAPK during sporulation (sensu Fungi)
- GO:0030470, spore germination (sensu Fungi)
- GO:0030476, spore wall assembly (sensu Fungi)
- GO:0042173, regulation of sporulation
- GO:0042174, negative regulation of sporulation
- GO:0042243, spore wall assembly (sensu Bacteria)
- GO:0042244, spore wall assembly
- GO:0045881, positive regulation of sporulation
- GO:0048236, spore development (sensu Magnoliophyta)
Terms movements under GO Slim term 'metabolism ; GO:0008152'
+ GO:0000079, regulation of cyclin dependent protein kinase activity
+ GO:0045736, negative regulation of cyclin dependent protein kinase activity
+ GO:0045737, positive regulation of cyclin dependent protein kinase activity
Terms movements under GO Slim term 'protein transport ; GO:0015031'
- GO:0000207, nuclear translocation of MAPK during sporulation (sensu Saccharomyces)
- GO:0030443, nuclear translocation of MAPK during sporulation (sensu Fungi)
Terms movements under GO Slim term 'protein metabolism ; GO:0019538'
- GO:0000207, nuclear translocation of MAPK during sporulation (sensu Saccharomyces)
- GO:0030443, nuclear translocation of MAPK during sporulation (sensu Fungi)
Terms movements under GO Slim term 'cell differentiation ; GO:0030154'
+ GO:0007151, sporulation (sensu Saccharomyces)
+ GO:0007152, spore wall assembly (sensu Saccharomyces)
+ GO:0007153, germination (sensu Saccharomyces)
+ GO:0009554, megasporogenesis
+ GO:0009556, microsporogenesis
+ GO:0030435, sporulation
+ GO:0030436, sporulation (sensu Bacteria)
+ GO:0030437, sporulation (sensu Fungi)
+ GO:0030470, spore germination (sensu Fungi)
+ GO:0030476, spore wall assembly (sensu Fungi)
+ GO:0042173, regulation of sporulation
+ GO:0042174, negative regulation of sporulation
+ GO:0042243, spore wall assembly (sensu Bacteria)
+ GO:0042244, spore wall assembly
+ GO:0045881, positive regulation of sporulation
+ GO:0048236, spore development (sensu Magnoliophyta)
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
none
Statistics:
Component: 1397 terms, 85.8% defined (1199 terms defined)
Function: 7305 terms, 87.1% defined (6362 terms defined)
Process: 8510 terms, 91.1% defined (7753 terms defined)
Total: 17212 terms, 89.0% defined (15314 terms defined)
Term errors
none