GO Monthly Release Notes for February 2003
========================
Generated on Mon Oct 27 12:28:58 2003
Files used:
component old: 2.296 new: 2.310
function old: 2.581 new: 2.599
process old: 2.657 new: 2.676
definitions old: 2.907 new: 2.936
GO Slim: Generic.0208
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in component ontology (31 new terms)
GO:0000180 obs SGD D cytosolic large ribosomal subunit
GO:0000181 obs SGD D cytosolic small ribosomal subunit
GO:0000222 GO:0005623 SGD D plasma membrane hydrogen-transporting ATPase V0 domain
GO:0005886
GO:0000223 GO:0005623 SGD D plasma membrane hydrogen-transporting ATPase V1 domain
GO:0005886
GO:0000346 GO:0005634 SGD D transcription export complex
GO:0000347 GO:0005634 SGD D THO complex
GO:0003675 obs OS D protein
GO:0005559 obs OS D ribozyme
GO:0005561 obs OS D nucleic acid
GO:0005562 obs OS D RNA
GO:0005564 obs OS D cytosolic tRNA
GO:0005565 obs OS D mitochondrial tRNA
GO:0005567 obs OS D cytosolic ribosomal RNA
GO:0005568 obs OS D mitochondrial rRNA
GO:0005571 obs OS D untranslated RNA
GO:0005572 obs OS D RNA polymerase II transcribed untranslated RNA
GO:0005574 obs OS D DNA
GO:0042581 GO:0016023 JL D 665688 specific granule
GO:0042582 GO:0005764 JL D 663138 azurophil granule
GO:0016023
GO:0042583 GO:0016023 JL D 664377 chromaffin granule
GO:0042584 GO:0005623 JL D 664377 chromaffin granule membrane
GO:0016023
GO:0042585 GO:0005634 JL D 664985 germinal vesicle
GO:0042587 GO:0005737 JL D 665002 glycogen granule
GO:0042588 GO:0016023 JL D 665022 zymogen granule
GO:0042589 GO:0005623 JL D 665022 zymogen granule membrane
GO:0016023
GO:0046858 GO:0005622 AI D 668420 chlorosome
GO:0046859 GO:0005737 AI D 671183 hydrogenosomal membrane
GO:0046860 GO:0005737 AI D 665004 glycosome membrane
GO:0046861 GO:0005737 AI D 671148 glyoxysomal membrane
GO:0046862 GO:0009536 AI D 663192 chromoplast membrane
GO:0046868 GO:0005886 AI D 669010 mesosome
Term name changes in component ontology
GO:0005901: caveolae --> caveola
GO:0015627: type II protein (Sec) secretion system complex --> type II protein secretion system complex
New definitions for component ontology terms (10 new definitions)
GO:0005766, primary lysosome
GO:0005767, secondary lysosome
GO:0005885, Arp2/3 protein complex
GO:0005901, caveola
GO:0009317, acetyl-CoA carboxylase complex
GO:0009329, acetate CoA-transferase complex
GO:0009929, cell surface (sensu Magnoliophyta)
GO:0015629, actin cytoskeleton
GO:0015630, microtubule cytoskeleton
GO:0016599, caveolar membrane
Term movements in component ontology:
Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
+ GO:0009317, acetyl-CoA carboxylase complex
+ GO:0009329, acetate CoA-transferase complex
+ GO:0009343, biotin carboxylase complex
Terms movements under GO Slim term 'unlocalized ; GO:0005941'
- GO:0009317, acetyl-CoA carboxylase complex
- GO:0009329, acetate CoA-transferase complex
- GO:0009343, biotin carboxylase complex
New terms in function ontology (16 new terms)
GO:0000035 GO:0005488 SGD D acyl binding
GO:0000906 GO:0003824 SGD D 686299 6,7-dimethyl-8-ribityllumazine synthase
GO:0000907 GO:0003824 SGD D 686297 sulfonate dioxygenase
GO:0000908 GO:0003824 SGD D 686297 taurine dioxygenase
GO:0001735 GO:0003824 MGI D prenylcysteine oxidase
GO:0005082 GO:0004871 OS D receptor signaling protein tyrosine phosphatase signaling protein
GO:0008018 obs FB D structural protein of chorion (sensu Drosophila)
GO:0008500 obs FB D glycine-, glutamate-, thienylcyclohexylpiperidine binding
GO:0015047 GO:0003824 FB D NADPH-cytochrome c2 reductase
GO:0018602 GO:0003824 FB D 2,4-dichlorophenoxyacetate alpha-ketoglutarate dioxygenase
GO:0042586 GO:0003824 JL D 689399 peptide deformylase
GO:0046863 GO:0030234 AI D 681745 ribulose-1,5-bisphosphate carboxylase/oxygenase activase
GO:0046870 GO:0005488 AI D cadmium ion binding
GO:0046871 GO:0030246 AI D 685367 N-acetylgalactosamine binding
GO:0046872 GO:0005488 AI D metal ion binding
GO:0046873 GO:0005215 AI D metal ion transporter
New obsoletions in function ontology
GO:0000039, plasma membrane long-chain fatty acid transporter: describes a gene product and it contains component information.
GO:0001577, galectin: refers to a class of gene products.
GO:0003694, plasmid binding: refers to component information.
GO:0003791, membrane associated actin binding: contains both component and function information.
GO:0004005, plasma membrane cation-transporting ATPase: contains both component and function information.
GO:0004212, lysosomal cysteine-type endopeptidase: contains both component and function information.
GO:0004241, alpha-mitochondrial processing peptidase: represents a gene product.
GO:0004242, beta-mitochondrial processing peptidase: represents a gene product.
GO:0004258, vacuolar carboxypeptidase Y: contains both component and function information.
GO:0004384, membrane-associated guanylate kinase: represents a gene product and not a function.
GO:0005180, peptide hormone: describes a type of hormone rather than a molecular function.
GO:0005181, glycopeptide hormone: describes a type of hormone rather than a molecular function.
GO:0005182, lipopeptide hormone: describes a type of hormone rather than a molecular function.
GO:0005240, glycine receptor-associated protein: does not describe a molecular function.
GO:0005376, plasma membrane copper transporter: contains both component and function information.
GO:0005377, intracellular copper ion transporter: contains both component and function information.
GO:0005400, peroxisomal membrane transporter: contains both component and function information.
GO:0005508, copper/cadmium binding: represents a composite function.
GO:0005530, lectin: refers to a class of gene products.
GO:0005531, galactose binding lectin: refers to a class of gene products.
GO:0005532, mannose binding lectin: refers to a class of gene products.
GO:0005533, N-acetylgalactosamine lectin: refers to a class of gene products.
GO:0008042, iron-sulfur electron transfer carrier: refers to a class of gene products.
GO:0008246, electron transfer flavoprotein: refers to a class of gene products.
GO:0008563, alpha-factor sex pheromone exporter: this function does not exist. Alpha-factor is secreted by the classical secretion pathway and not exported.
GO:0009481, aa3-type cytochrome c oxidase: describes a class of gene products rather than a molecular function.
GO:0009482, ba3-type cytochrome c oxidase: describes a class of gene products rather than a molecular function.
GO:0009483, caa3-type cytochrome c oxidase: describes a class of gene products rather than a molecular function.
GO:0009485, cbb3-type cytochrome c oxidase: describes a class of gene products rather than a molecular function.
GO:0009490, mononuclear iron electron carrier: refers to a class of gene products.
GO:0009491, redox-active disulfide bond electron carrier: refers to a class of gene products.
GO:0009492, Fe2S2 electron transfer carrier: refers to a class of gene products.
GO:0009497, Fe3S4/Fe4S4 electron transfer carrier: refers to a class of gene products.
GO:0015001, high-potential iron-sulfur carrier: refers to a class of gene products.
GO:0015003, copper electron carrier: refers to a class of gene products.
GO:0015007, electron carrier, chlorophyll electron transport system: contains both process and function information.
GO:0015025, GPI-anchored membrane-bound receptor: contains both component and function information.
GO:0015040, electron transfer flavoprotein, group I: refers to a class of gene products.
GO:0015041, electron transfer flavoprotein, group II: refers to a class of gene products.
GO:0015176, holin: represents a class of gene products.
GO:0015429, peroxisomal fatty acyl transporter: describes a gene product and it contains both component and function information.
GO:0015461, endosomal oligosaccharide transporter: contains both component and function information.
GO:0015468, colicin: represents a class of gene products.
GO:0015479, outer membrane exporter porin: contains both component and function information.
GO:0015644, lipoprotein antitoxin: does not represent a function distinct from its parent term.
GO:0015933, flavin-containing electron transporter: does not describe a molecular function.
GO:0017029, lysosomal protein stabilization: contains both component and function information.
GO:0017135, membrane-associated protein with guanylate kinase activity interacting: does not represent a molecular function and the term name appears to make no sense.
GO:0019040, viral host shutoff protein: does not represent a molecular function.
GO:0030051, FK506-sensitive peptidyl-prolyl cis-trans isomerase: represents a gene product and not a function. Annotate to the molecular function terms 'FK506 binding ; GO:0005528' and 'peptidyl-prolyl cis-trans isomerase ; GO:0003755'.
GO:0042141, mating pheromone exporter: is too gene product specific.
Term name changes in function ontology
GO:0000287: magnesium binding --> magnesium ion binding
GO:0003694: plasmid-associated protein --> plasmid binding
GO:0004250: vacuolar aminopeptidase I --> aminopeptidase I
GO:0005377: intracellular copper transporter --> intracellular copper ion transporter
GO:0005381: iron transporter --> iron ion transporter
GO:0005382: transmembrane iron permease --> transmembrane iron ion permease
GO:0005506: iron binding --> iron ion binding
GO:0005507: copper binding --> copper ion binding
GO:0005533: N-acetyl-galactosamine lectin --> N-acetylgalactosamine lectin
GO:0008270: zinc binding --> zinc ion binding
GO:0008701: 4-hydroxy-2-oxovalerate/4-hydroxy-2-keto-pentanoic acid aldolase --> 4-hydroxy-2-oxovalerate aldolase
GO:0015079: potassium transporter --> potassium ion transporter
GO:0015080: silver transporter --> silver ion transporter
GO:0015081: sodium transporter --> sodium ion transporter
GO:0015089: high affinity copper transporter --> high affinity copper ion transporter
GO:0015090: low affinity iron transporter --> low affinity iron ion transporter
GO:0016151: nickel binding --> nickel ion binding
GO:0030145: manganese binding --> manganese ion binding
GO:0030151: molybdenum binding --> molybdenum ion binding
GO:0045340: mercury binding --> mercury ion binding
New definitions for function ontology terms (54 new definitions)
GO:0000039, plasma membrane long-chain fatty acid transporter
GO:0003694, plasmid binding
GO:0003791, membrane associated actin binding
GO:0004005, plasma membrane cation-transporting ATPase
GO:0004007, heavy metal-exporting ATPase
GO:0004212, lysosomal cysteine-type endopeptidase
GO:0004241, alpha-mitochondrial processing peptidase
GO:0004242, beta-mitochondrial processing peptidase
GO:0004244, mitochondrial inner membrane peptidase
GO:0005180, peptide hormone
GO:0005181, glycopeptide hormone
GO:0005182, lipopeptide hormone
GO:0005240, glycine receptor-associated protein
GO:0005342, organic acid transporter
GO:0005373, heavy metal ion porter
GO:0005375, copper ion transporter
GO:0005376, plasma membrane copper transporter
GO:0005377, intracellular copper ion transporter
GO:0005381, iron ion transporter
GO:0005400, peroxisomal membrane transporter
GO:0005502, 11-cis retinal binding
GO:0005503, all-trans retinal binding
GO:0005508, copper/cadmium binding
GO:0005530, lectin
GO:0005531, galactose binding lectin
GO:0005532, mannose binding lectin
GO:0005533, N-acetylgalactosamine lectin
GO:0008514, organic anion transporter
GO:0009491, redox-active disulfide bond electron carrier
GO:0009492, Fe2S2 electron transfer carrier
GO:0009497, Fe3S4/Fe4S4 electron transfer carrier
GO:0015001, high-potential iron-sulfur carrier
GO:0015025, GPI-anchored membrane-bound receptor
GO:0015076, heavy metal ion transporter
GO:0015077, monovalent inorganic cation transporter
GO:0015079, potassium ion transporter
GO:0015080, silver ion transporter
GO:0015081, sodium ion transporter
GO:0015082, di-, tri-valent inorganic cation transporter
GO:0015083, aluminum ion transporter
GO:0015094, lead ion transporter
GO:0015097, mercury ion transporter
GO:0015098, molybdate ion transporter
GO:0015099, nickel ion transporter
GO:0015100, vanadium ion transporter
GO:0015101, organic cation transporter
GO:0015103, inorganic anion transporter
GO:0015429, peroxisomal fatty acyl transporter
GO:0015461, endosomal oligosaccharide transporter
GO:0015479, outer membrane exporter porin
GO:0015607, fatty acyl CoA transporter
GO:0016918, retinal binding
GO:0017029, lysosomal protein stabilization
GO:0019040, viral host shutoff protein
New term merges in function ontology
GO:0008799 has been merged into GO:0004121, cystathionine beta-lyase
GO:0016033 has been merged into GO:0005381, iron ion transporter
GO:0030230 has been merged into GO:0004767, sphingomyelin phosphodiesterase
GO:0030231 has been merged into GO:0004767, sphingomyelin phosphodiesterase
Term movements in function ontology:
Terms movements under GO Slim term 'nucleotide binding ; GO:0000166'
- GO:0004005, plasma membrane cation-transporting ATPase
- GO:0005325, peroxisomal fatty acyl CoA transporter
- GO:0008563, alpha-factor sex pheromone exporter
- GO:0015429, peroxisomal fatty acyl transporter
- GO:0042141, mating pheromone exporter
Terms movements under GO Slim term 'DNA binding ; GO:0003677'
- GO:0003694, plasmid binding
Terms movements under GO Slim term 'RNA binding ; GO:0003723'
- GO:0019040, viral host shutoff protein
Terms movements under GO Slim term 'actin binding ; GO:0003779'
- GO:0003791, membrane associated actin binding
Terms movements under GO Slim term 'defense/immunity protein ; GO:0003793'
- GO:0015644, lipoprotein antitoxin
Terms movements under GO Slim term 'enzyme ; GO:0003824'
- GO:0004005, plasma membrane cation-transporting ATPase
- GO:0004384, membrane-associated guanylate kinase
- GO:0005325, peroxisomal fatty acyl CoA transporter
- GO:0008563, alpha-factor sex pheromone exporter
- GO:0009481, aa3-type cytochrome c oxidase
- GO:0009482, ba3-type cytochrome c oxidase
- GO:0009483, caa3-type cytochrome c oxidase
- GO:0009485, cbb3-type cytochrome c oxidase
- GO:0015429, peroxisomal fatty acyl transporter
- GO:0030051, FK506-sensitive peptidyl-prolyl cis-trans isomerase
- GO:0042141, mating pheromone exporter
Terms movements under GO Slim term 'nuclease ; GO:0004518'
- GO:0019040, viral host shutoff protein
Terms movements under GO Slim term 'signal transducer ; GO:0004871'
- GO:0005240, glycine receptor-associated protein
Terms movements under GO Slim term 'receptor ; GO:0004872'
- GO:0015025, GPI-anchored membrane-bound receptor
Terms movements under GO Slim term 'receptor binding ; GO:0005102'
- GO:0005180, peptide hormone
- GO:0005181, glycopeptide hormone
- GO:0005182, lipopeptide hormone
Terms movements under GO Slim term 'cell adhesion molecule ; GO:0005194'
- GO:0004384, membrane-associated guanylate kinase
Terms movements under GO Slim term 'structural molecule ; GO:0005198'
- GO:0015468, colicin
Terms movements under GO Slim term 'transporter ; GO:0005215'
- GO:0000039, plasma membrane long-chain fatty acid transporter
- GO:0004005, plasma membrane cation-transporting ATPase
- GO:0005240, glycine receptor-associated protein
- GO:0005376, plasma membrane copper transporter
- GO:0005377, intracellular copper ion transporter
- GO:0005400, peroxisomal membrane transporter
- GO:0008042, iron-sulfur electron transfer carrier
- GO:0008563, alpha-factor sex pheromone exporter
- GO:0009481, aa3-type cytochrome c oxidase
- GO:0009482, ba3-type cytochrome c oxidase
- GO:0009483, caa3-type cytochrome c oxidase
- GO:0009485, cbb3-type cytochrome c oxidase
- GO:0009490, mononuclear iron electron carrier
- GO:0009491, redox-active disulfide bond electron carrier
- GO:0009492, Fe2S2 electron transfer carrier
- GO:0009497, Fe3S4/Fe4S4 electron transfer carrier
- GO:0015001, high-potential iron-sulfur carrier
- GO:0015003, copper electron carrier
- GO:0015007, electron carrier, chlorophyll electron transport system
- GO:0015176, holin
- GO:0015429, peroxisomal fatty acyl transporter
- GO:0015461, endosomal oligosaccharide transporter
- GO:0015468, colicin
- GO:0015479, outer membrane exporter porin
- GO:0042141, mating pheromone exporter
Terms movements under GO Slim term 'binding ; GO:0005488'
- GO:0005508, copper/cadmium binding
- GO:0015644, lipoprotein antitoxin
- GO:0030051, FK506-sensitive peptidyl-prolyl cis-trans isomerase
Terms movements under GO Slim term 'electron transporter ; GO:0005489'
- GO:0008042, iron-sulfur electron transfer carrier
- GO:0008246, electron transfer flavoprotein
- GO:0009490, mononuclear iron electron carrier
- GO:0009491, redox-active disulfide bond electron carrier
- GO:0009492, Fe2S2 electron transfer carrier
- GO:0009497, Fe3S4/Fe4S4 electron transfer carrier
- GO:0015001, high-potential iron-sulfur carrier
- GO:0015003, copper electron carrier
- GO:0015007, electron carrier, chlorophyll electron transport system
- GO:0015040, electron transfer flavoprotein, group I
- GO:0015041, electron transfer flavoprotein, group II
- GO:0015933, flavin-containing electron transporter
Terms movements under GO Slim term 'protein binding ; GO:0005515'
- GO:0017135, membrane-associated protein with guanylate kinase activity interacting
Terms movements under GO Slim term 'peptidase ; GO:0008233'
- GO:0004212, lysosomal cysteine-type endopeptidase
- GO:0004241, alpha-mitochondrial processing peptidase
- GO:0004242, beta-mitochondrial processing peptidase
- GO:0004258, vacuolar carboxypeptidase Y
Terms movements under GO Slim term 'lysin ; GO:0015465'
- GO:0015176, holin
- GO:0015468, colicin
Terms movements under GO Slim term 'protein stabilization ; GO:0017028'
- GO:0017029, lysosomal protein stabilization
Terms movements under GO Slim term 'carbohydrate binding ; GO:0030246'
- GO:0001577, galectin
- GO:0005530, lectin
- GO:0005531, galactose binding lectin
- GO:0005532, mannose binding lectin
- GO:0005533, N-acetylgalactosamine lectin
New terms in process ontology (50 new terms)
GO:0001736 GO:0007010 MGI D 688606 establishment of planar polarity
GO:0007275
GO:0001737 GO:0007010 MGI D 688606 establishment of wing hair orientation
GO:0007275
GO:0001738 GO:0007275 MGI D 688606 morphogenesis of a polarized epithelium
GO:0006264 GO:0006259 OS D mitochondrial DNA replication
GO:0007049
GO:0007081 obs OS D mitotic sister-chromatid adhesion release
GO:0007083 GO:0007049 OS D mitotic chromosome decondensation
GO:0007235 obs OS D activation of Ypd1 protein
GO:0007236 obs OS D activation of Ssk1 protein
GO:0007237 obs OS D activation of Ssk2/Ssk22 proteins
GO:0007238 obs OS D activation of Pbs2
GO:0007239 obs OS D activation of Hog1
GO:0007240 obs OS D nuclear translocation of Hog1
GO:0007241 obs OS D inactivation of Hog1
GO:0007336 obs OS D bilateral process
GO:0007337 obs OS D unilateral process
GO:0008085 obs FB D phototransduction, visible light, light adaptation
GO:0008101 GO:0007165 FB D dpp receptor signaling pathway
GO:0008155 obs FB D larval behavior (sensu Drosophila)
GO:0009987 GO:0008150 TAIR D cellular process
GO:0009988 GO:0008037 TAIR D cell-cell recognition
GO:0009989 GO:0008037 TAIR D cell-matrix recognition
GO:0009990 GO:0008037 TAIR D contact guidance
GO:0009991 GO:0007154 TAIR D response to extracellular stimulus
GO:0009605
GO:0009992 GO:0019725 TAIR D cellular osmoregulation
GO:0009993 GO:0000003 TAIR D oogenesis (sensu Insecta)
GO:0009994 GO:0000003 TAIR D oocyte differentiation
GO:0030154
GO:0009995 GO:0008150 TAIR D soluble molecule recognition
GO:0009605
GO:0009996 GO:0030154 TAIR D 689561 suppression of cell fate
GO:0009997 GO:0030154 TAIR D 689561 suppression of cardioblast cell fate
GO:0009998 GO:0030154 TAIR D 689561 suppression of retinal cone cell fate
GO:0009999 GO:0030154 TAIR D 689561 suppression of hair cell fate
GO:0010000 GO:0030154 TAIR D 689561 suppression of cone cell fate (sensu Drosophila)
GO:0010001 GO:0030154 TAIR D 689561 glial cell differentiation
GO:0010002 GO:0030154 TAIR D 689561 cardioblast differentiation
GO:0010003 GO:0007275 TAIR D 689561 gastrulation (sensu Mammalia)
GO:0010004 GO:0007275 TAIR D 689561 gastrulation (sensu Insecta)
GO:0015849 GO:0006810 FB D organic acid transport
GO:0017038 GO:0015031 FB D protein import
GO:0018176 GO:0006464 FB D protein adenylation
GO:0018341 GO:0006464 FB D peptidyl-N6-pyruvic acid 2-iminyl-L-lysine biosynthesis
GO:0018367 obs FB D free L-amino acid racemization
GO:0019805 GO:0008152 FB D quinolinate biosynthesis
GO:0009058
GO:0042590 GO:0009607 JL D 617897 antigen presentation, exogenous antigen via MHC class I
GO:0042591 GO:0009607 JL D 617897 antigen presentation, exogenous antigen via MHC class II
GO:0046864 GO:0006810 AI D 680181 isoprenoid transport
GO:0046865 GO:0006810 AI D 680181 terpenoid transport
GO:0046866 GO:0006810 AI D 680181 tetraterpenoid transport
GO:0046867 GO:0006810 AI D 680181 carotenoid transport
GO:0046869 GO:0006464 AI D iron incorporation into iron-sulfur cluster via tris-L-cysteinyl-L-aspartato diiron disulfide
GO:0046874 GO:0008152 AI D quinolinate metabolism
New obsoletions in process ontology
GO:0006889, regulation of calcium in ER: the term name is ambiguous and as a result, the term was incorrectly placed in the ontology (it was a descendant of 'protein transport').
GO:0045783, negative regulation of calcium in ER: the term name is ambiguous and as a result, the term was incorrectly placed in the ontology (it was a descendant of 'protein transport').
GO:0045784, positive regulation of calcium in ER: the term name is ambiguous and as a result, the term was incorrectly placed in the ontology (it was a descendant of 'protein transport').
Term name changes in process ontology
GO:0000040: low affinity iron transport --> low affinity iron ion transport
GO:0000041: transition metal transport --> transition metal ion transport
GO:0006813: potassium transport --> potassium ion transport
GO:0006814: sodium transport --> sodium ion transport
GO:0006826: iron transport --> iron ion transport
GO:0006827: high affinity iron transport --> high affinity iron ion transport
GO:0006852: mitochondrial sodium/calcium exchange --> mitochondrial sodium/calcium ion exchange
GO:0006876: cadmium homeostasis --> cadmium ion homeostasis
GO:0006877: cobalt homeostasis --> cobalt ion homeostasis
GO:0006878: copper homeostasis --> copper ion homeostasis
GO:0006879: iron homeostasis --> iron ion homeostasis
GO:0006880: intracellular iron storage --> intracellular iron ion storage
GO:0006881: extracellular iron storage --> extracellular iron ion storage
GO:0006882: zinc homeostasis --> zinc ion homeostasis
GO:0007400: neuroblast determination --> neuroblast cell fate determination
GO:0007510: cardioblast determination --> cardioblast cell fate determination
GO:0007514: garland cell development --> garland cell differentiation
GO:0007518: myoblast determination --> myoblast cell fate determination
GO:0009836: ripening (climacteric type) --> ripening, climacteric
GO:0009837: ripening (non-climacteric type) --> ripening, non-climacteric
GO:0015673: silver transport --> silver ion transport
GO:0015677: copper uptake transport --> copper ion import
GO:0015678: high affinity copper transport --> high affinity copper ion transport
GO:0015679: plasma membrane copper transport --> plasma membrane copper ion transport
GO:0015680: intracellular copper delivery --> intracellular copper ion transport
GO:0015683: high affinity ferric transport --> high affinity ferric iron transport
GO:0030026: manganese homeostasis --> manganese ion homeostasis
GO:0046686: response to cadmium --> response to cadmium ion
GO:0046688: response to copper --> response to copper ion
GO:0046689: response to mercuric --> response to mercury ion
GO:0046690: response to tellurium --> response to tellurium ion
New definitions for process ontology terms (35 new definitions)
GO:0000041, transition metal ion transport
GO:0000054, ribosome nucleus export
GO:0006607, NLS-bearing substrate-nucleus import
GO:0006608, snRNP protein-nucleus import
GO:0006610, ribosomal protein-nucleus import
GO:0006811, ion transport
GO:0006812, cation transport
GO:0006813, potassium ion transport
GO:0006814, sodium ion transport
GO:0006816, calcium ion transport
GO:0006820, anion transport
GO:0006824, cobalt ion transport
GO:0006825, copper ion transport
GO:0006826, iron ion transport
GO:0006828, manganese ion transport
GO:0006829, zinc ion transport
GO:0007036, vacuolar calcium ion homeostasis
GO:0015672, monovalent inorganic cation transport
GO:0015673, silver ion transport
GO:0015674, di-, tri-valent inorganic cation transport
GO:0015675, nickel ion transport
GO:0015676, vanadium ion transport
GO:0015677, copper ion import
GO:0015679, plasma membrane copper ion transport
GO:0015680, intracellular copper ion transport
GO:0015689, molybdate ion transport
GO:0015690, aluminum ion transport
GO:0015691, cadmium ion transport
GO:0015692, lead ion transport
GO:0015693, magnesium ion transport
GO:0015694, mercury ion transport
GO:0015695, organic cation transport
GO:0015910, peroxisomal long-chain fatty acid import
GO:0015911, plasma membrane long-chain fatty acid transport
GO:0030001, metal ion transport
New term merges in process ontology
GO:0015681 has been merged into GO:0006826, iron ion transport
Term movements in process ontology:
Terms movements under GO Slim term 'reproduction ; GO:0000003'
+ GO:0000282, bud site selection
+ GO:0007114, budding
+ GO:0007116, regulation of budding
+ GO:0007117, bud growth
+ GO:0007118, apical bud growth
+ GO:0007119, isotropic bud growth
+ GO:0007120, axial budding
+ GO:0007121, polar budding
+ GO:0007122, loss of asymmetric budding
+ GO:0007123, bud scar accumulation
- GO:0007280, pole cell migration
+ GO:0045781, negative regulation of budding
+ GO:0045782, positive regulation of budding
Terms movements under GO Slim term 'transport ; GO:0006810'
- GO:0006889, regulation of calcium in ER
- GO:0045783, negative regulation of calcium in ER
- GO:0045784, positive regulation of calcium in ER
Terms movements under GO Slim term 'ion transport ; GO:0006811'
+ GO:0045016, mitochondrial magnesium ion transport
Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010'
+ GO:0042247, establishment of polarity of follicular epithelium
+ GO:0042249, establishment of polarity of embryonic epithelium
+ GO:0042252, establishment of polarity of larval imaginal disc epithelium
Terms movements under GO Slim term 'cell communication ; GO:0007154'
+ GO:0001560, interpretation of external signals that regulate cell growth
+ GO:0009432, SOS response
+ GO:0042262, DNA protection
Terms movements under GO Slim term 'development ; GO:0007275'
- GO:0001708, cell fate specification
- GO:0001709, cell fate determination
- GO:0001710, mesoderm cell fate commitment
- GO:0001711, endoderm cell fate commitment
- GO:0001712, ectoderm cell fate commitment
- GO:0001714, endoderm cell fate specification
- GO:0001715, ectoderm cell fate specification
- GO:0007438, oenocyte development
- GO:0007501, mesoderm cell fate specification
- GO:0007510, cardioblast cell fate determination
- GO:0007511, dorsal vessel development
- GO:0009844, germination
- GO:0009845, seed germination
- GO:0009846, pollen germination
- GO:0009847, spore germination
- GO:0009912, hair cell fate commitment
- GO:0009957, epidermal cell fate specification
- GO:0045165, cell fate commitment
- GO:0045166, protein secretion involved in cell fate commitment
- GO:0045167, asymmetric protein localization involved in cell fate commitment
- GO:0045168, cell-cell signaling involved in cell fate commitment
- GO:0046331, lateral inhibition
- GO:0046530, photoreceptor differentiation
- GO:0046531, photoreceptor morphogenesis
- GO:0046552, photoreceptor commitment
Terms movements under GO Slim term 'physiological processes ; GO:0007582'
- GO:0006035, cuticle chitin biosynthesis
- GO:0006723, cuticle hydrocarbon biosynthesis
- GO:0007590, fat body metabolism (sensu Insecta)
- GO:0007592, cuticle biosynthesis (sensu Invertebrata)
- GO:0008362, embryonic cuticle biosynthesis (sensu Insecta)
- GO:0008365, adult cuticle biosynthesis (sensu Insecta)
- GO:0015032, storage protein uptake
- GO:0040002, cuticle biosynthesis (sensu Nematoda)
- GO:0040003, cuticle biosynthesis (sensu Insecta)
- GO:0042335, cuticle biosynthesis
Terms movements under GO Slim term 'cell recognition ; GO:0008037'
- GO:0007411, axon guidance
- GO:0008045, motor axon guidance
- GO:0030516, regulation of axon extension
- GO:0030517, negative regulation of axon extension
- GO:0045773, positive regulation of axon extension
Terms movements under GO Slim term 'biological_process ; GO:0008150'
+ GO:0000740, nuclear membrane fusion
+ GO:0000741, karyogamy
+ GO:0000742, karyogamy during conjugation with cellular fusion
+ GO:0000743, nuclear migration during conjugation with cellular fusion
+ GO:0000744, karyogamy during conjugation without cellular fusion
+ GO:0000745, nuclear exchange during conjugation without cellular fusion
+ GO:0000755, cytogamy
+ GO:0000768, syncytium formation by plasma membrane fusion
+ GO:0001539, ciliary/flagellar motility
+ GO:0001667, ameboid cell migration
+ GO:0006928, cell motility
+ GO:0006929, substrate-bound cell migration
+ GO:0006930, substrate-bound cell migration, cell extension
+ GO:0006931, substrate-bound cell migration, cell attachment to substrate
+ GO:0006932, substrate-bound cell migration, cell contraction
+ GO:0006933, substrate-bound cell migration, cell release, from substrate
+ GO:0006934, substrate-bound cell migration, adhesion receptor recycling
+ GO:0006935, chemotaxis
+ GO:0006936, muscle contraction
+ GO:0006937, regulation of muscle contraction
+ GO:0006938, sarcomere alignment
+ GO:0006939, smooth muscle contraction
+ GO:0006940, regulation of smooth muscle contraction
+ GO:0006941, striated muscle contraction
+ GO:0006942, regulation of striated muscle contraction
+ GO:0006944, membrane fusion
+ GO:0006948, viral-induced cell-cell fusion
+ GO:0007280, pole cell migration
+ GO:0007297, follicle cell migration
+ GO:0007298, border cell migration
+ GO:0007342, binding/fusion of sperm to egg plasma membrane
+ GO:0007344, pronuclear fusion
+ GO:0007395, spreading of leading edge cells
+ GO:0007411, axon guidance
+ GO:0007427, tracheal cell migration (sensu Insecta)
+ GO:0008045, motor axon guidance
+ GO:0008078, mesoderm cell migration
+ GO:0008347, glia cell migration
+ GO:0008354, germ-cell migration
+ GO:0009453, energy taxis
+ GO:0009454, aerotaxis
+ GO:0009455, redox taxis
+ GO:0016198, axon choice point recognition
+ GO:0016199, axon midline choice point recognition
+ GO:0016320, ER fusion
+ GO:0016477, cell migration
+ GO:0019064, viral envelope fusion
+ GO:0030049, muscle filament sliding
+ GO:0030317, sperm motility
+ GO:0030334, regulation of cell migration
+ GO:0030335, positive regulation of cell migration
+ GO:0030336, negative regulation of cell migration
+ GO:0030516, regulation of axon extension
+ GO:0030517, negative regulation of axon extension
+ GO:0030593, neutrophil chemotaxis
+ GO:0030595, immune cell chemotaxis
+ GO:0040039, inductive cell migration
+ GO:0042074, cell migration during gastrulation
+ GO:0042330, taxis
+ GO:0042331, phototaxis
+ GO:0042332, gravitaxis
+ GO:0042333, chemotaxis to oxidizable substrate
+ GO:0042334, taxis to electron acceptor
+ GO:0045026, plasma membrane fusion
+ GO:0045123, cellular extravasation
+ GO:0045773, positive regulation of axon extension
+ GO:0045932, negative regulation of muscle contraction
+ GO:0045933, positive regulation of muscle contraction
+ GO:0045986, negative regulation of smooth muscle contraction
+ GO:0045987, positive regulation of smooth muscle contraction
+ GO:0045988, negative regulation of striated muscle contraction
+ GO:0045989, positive regulation of striated muscle contraction
Terms movements under GO Slim term 'cell growth and/or maintenance ; GO:0008151'
- GO:0000045, autophagic vacuole formation
- GO:0000046, autophagic vacuole fusion
- GO:0000190, MAPKKK cascade (pseudohyphal growth)
- GO:0000191, activation of MAPKKK (pseudohyphal growth)
- GO:0000192, activation of MAPKK (pseudohyphal growth)
- GO:0000193, activation of MAPK (pseudohyphal growth)
- GO:0000194, inactivation of MAPK (pseudohyphal growth)
- GO:0000195, nuclear translocation of MAPK (pseudohyphal growth)
- GO:0000740, nuclear membrane fusion
- GO:0000741, karyogamy
- GO:0000742, karyogamy during conjugation with cellular fusion
- GO:0000743, nuclear migration during conjugation with cellular fusion
- GO:0000744, karyogamy during conjugation without cellular fusion
- GO:0000745, nuclear exchange during conjugation without cellular fusion
- GO:0000753, cellular morphogenesis during conjugation with cellular fusion
- GO:0000755, cytogamy
- GO:0000759, cellular morphogenesis during conjugation without cellular fusion
- GO:0000763, cellular morphogenesis during unidirectional conjugation
- GO:0000764, cellular morphogenesis during pheromone-induced unidirectional conjugation
- GO:0000767, cellular morphogenesis during conjugation
- GO:0000902, cellular morphogenesis
- GO:0000903, cellular morphogenesis during vegetative growth
- GO:0000904, cellular morphogenesis during differentiation
- GO:0001539, ciliary/flagellar motility
- GO:0001667, ameboid cell migration
- GO:0006914, autophagy
- GO:0006928, cell motility
- GO:0006929, substrate-bound cell migration
- GO:0006930, substrate-bound cell migration, cell extension
- GO:0006931, substrate-bound cell migration, cell attachment to substrate
- GO:0006932, substrate-bound cell migration, cell contraction
- GO:0006933, substrate-bound cell migration, cell release, from substrate
- GO:0006934, substrate-bound cell migration, adhesion receptor recycling
- GO:0006935, chemotaxis
- GO:0006936, muscle contraction
- GO:0006937, regulation of muscle contraction
- GO:0006938, sarcomere alignment
- GO:0006939, smooth muscle contraction
- GO:0006940, regulation of smooth muscle contraction
- GO:0006941, striated muscle contraction
- GO:0006942, regulation of striated muscle contraction
- GO:0006944, membrane fusion
- GO:0007124, pseudohyphal growth
- GO:0007125, invasive growth
- GO:0007149, colony morphology
- GO:0007150, growth pattern
- GO:0007280, pole cell migration
- GO:0007297, follicle cell migration
- GO:0007298, border cell migration
- GO:0007342, binding/fusion of sperm to egg plasma membrane
- GO:0007344, pronuclear fusion
+ GO:0007349, cellularization
- GO:0007394, elongation of leading edge cells
- GO:0007427, tracheal cell migration (sensu Insecta)
- GO:0008078, mesoderm cell migration
- GO:0008347, glia cell migration
- GO:0008354, germ-cell migration
- GO:0008360, regulation of cell shape
- GO:0008361, regulation of cell size
- GO:0009453, energy taxis
- GO:0009454, aerotaxis
- GO:0009455, redox taxis
+ GO:0009796, cellularization (sensu Animalia)
+ GO:0009797, cellularization (sensu Magnoliophyta)
- GO:0009825, cell expansion
- GO:0009826, cell elongation
- GO:0009831, cell wall modification during cell expansion (sensu Magnoliophyta)
- GO:0016236, macroautophagy
- GO:0016237, microautophagy
- GO:0016238, chaperone-mediated autophagy
- GO:0016239, positive regulation of macroautophagy
- GO:0016240, autophagic vacuole docking
- GO:0016241, regulation of macroautophagy
- GO:0016242, negative regulation of macroautophagy
- GO:0016243, regulation of autophagic vacuole size
- GO:0016320, ER fusion
- GO:0016476, shape changes of embryonic cells
- GO:0016477, cell migration
- GO:0019064, viral envelope fusion
- GO:0030049, muscle filament sliding
- GO:0030317, sperm motility
- GO:0030334, regulation of cell migration
- GO:0030335, positive regulation of cell migration
- GO:0030336, negative regulation of cell migration
- GO:0030399, autophagic membrane degradation
- GO:0030447, filamentous growth
- GO:0030448, hyphal growth
- GO:0030593, neutrophil chemotaxis
- GO:0030595, immune cell chemotaxis
- GO:0040039, inductive cell migration
- GO:0042074, cell migration during gastrulation
- GO:0042330, taxis
- GO:0042331, phototaxis
- GO:0042332, gravitaxis
- GO:0042333, chemotaxis to oxidizable substrate
- GO:0042334, taxis to electron acceptor
- GO:0042547, cell wall modification during cell expansion
- GO:0045026, plasma membrane fusion
- GO:0045123, cellular extravasation
- GO:0045311, filamentous growth in response to pheromones
- GO:0045771, negative regulation of autophagic vacuole size
- GO:0045772, positive regulation of autophagic vacuole size
- GO:0045788, negative regulation of cell shape
- GO:0045789, positive regulation of cell shape
- GO:0045792, negative regulation of cell size
- GO:0045793, positive regulation of cell size
- GO:0045932, negative regulation of muscle contraction
- GO:0045933, positive regulation of muscle contraction
- GO:0045986, negative regulation of smooth muscle contraction
- GO:0045987, positive regulation of smooth muscle contraction
- GO:0045988, negative regulation of striated muscle contraction
- GO:0045989, positive regulation of striated muscle contraction
Terms movements under GO Slim term 'metabolism ; GO:0008152'
+ GO:0000045, autophagic vacuole formation
+ GO:0000046, autophagic vacuole fusion
+ GO:0006914, autophagy
+ GO:0016236, macroautophagy
+ GO:0016237, microautophagy
+ GO:0016238, chaperone-mediated autophagy
+ GO:0016239, positive regulation of macroautophagy
+ GO:0016240, autophagic vacuole docking
+ GO:0016241, regulation of macroautophagy
+ GO:0016242, negative regulation of macroautophagy
+ GO:0016243, regulation of autophagic vacuole size
+ GO:0030399, autophagic membrane degradation
+ GO:0045771, negative regulation of autophagic vacuole size
+ GO:0045772, positive regulation of autophagic vacuole size
Terms movements under GO Slim term 'cell proliferation ; GO:0008283'
+ GO:0040016, embryonic cleavage
Terms movements under GO Slim term 'protein transport ; GO:0015031'
- GO:0006889, regulation of calcium in ER
- GO:0045783, negative regulation of calcium in ER
- GO:0045784, positive regulation of calcium in ER
Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043'
+ GO:0000190, MAPKKK cascade (pseudohyphal growth)
+ GO:0000191, activation of MAPKKK (pseudohyphal growth)
+ GO:0000192, activation of MAPKK (pseudohyphal growth)
+ GO:0000193, activation of MAPK (pseudohyphal growth)
+ GO:0000194, inactivation of MAPK (pseudohyphal growth)
+ GO:0000195, nuclear translocation of MAPK (pseudohyphal growth)
+ GO:0000753, cellular morphogenesis during conjugation with cellular fusion
+ GO:0000759, cellular morphogenesis during conjugation without cellular fusion
+ GO:0000763, cellular morphogenesis during unidirectional conjugation
+ GO:0000764, cellular morphogenesis during pheromone-induced unidirectional conjugation
+ GO:0000767, cellular morphogenesis during conjugation
+ GO:0000902, cellular morphogenesis
+ GO:0000903, cellular morphogenesis during vegetative growth
+ GO:0000904, cellular morphogenesis during differentiation
+ GO:0007124, pseudohyphal growth
+ GO:0007125, invasive growth
+ GO:0007149, colony morphology
+ GO:0007150, growth pattern
+ GO:0007394, elongation of leading edge cells
+ GO:0008360, regulation of cell shape
+ GO:0008361, regulation of cell size
+ GO:0009825, cell expansion
+ GO:0009826, cell elongation
+ GO:0016476, shape changes of embryonic cells
+ GO:0030447, filamentous growth
+ GO:0030448, hyphal growth
+ GO:0045311, filamentous growth in response to pheromones
+ GO:0045788, negative regulation of cell shape
+ GO:0045789, positive regulation of cell shape
+ GO:0045792, negative regulation of cell size
+ GO:0045793, positive regulation of cell size
Terms movements under GO Slim term 'protein metabolism ; GO:0019538'
- GO:0006889, regulation of calcium in ER
- GO:0045783, negative regulation of calcium in ER
- GO:0045784, positive regulation of calcium in ER
Terms movements under GO Slim term 'homeostasis ; GO:0019725'
- GO:0001659, thermoregulation
- GO:0001660, fever
- GO:0042309, homoiothermy
Terms movements under GO Slim term 'cell differentiation ; GO:0030154'
+ GO:0001556, oocyte maturation
+ GO:0001675, acrosome formation
+ GO:0001708, cell fate specification
+ GO:0001709, cell fate determination
+ GO:0001710, mesoderm cell fate commitment
+ GO:0001711, endoderm cell fate commitment
+ GO:0001712, ectoderm cell fate commitment
+ GO:0001713, ectoderm cell fate determination
+ GO:0001714, endoderm cell fate specification
+ GO:0001715, ectoderm cell fate specification
+ GO:0007278, pole cell determination
+ GO:0007286, spermatid development
+ GO:0007287, Nebenkern formation
+ GO:0007288, axoneme assembly
+ GO:0007289, spermatid nuclear differentiation
+ GO:0007290, spermatid nuclear elongation
+ GO:0007291, sperm individualization
+ GO:0007393, leading edge cell fate determination
+ GO:0007400, neuroblast cell fate determination
+ GO:0007402, determination of ganglion mother cell fate
+ GO:0007403, determination of glial fate
+ GO:0007425, tracheal cell fate determination (sensu Insecta)
+ GO:0007438, oenocyte development
+ GO:0007466, cone cell fate commitment (sensu Drosophila)
+ GO:0007493, endoderm cell fate determination
+ GO:0007500, mesoderm cell fate determination
+ GO:0007501, mesoderm cell fate specification
+ GO:0007510, cardioblast cell fate determination
+ GO:0007511, dorsal vessel development
+ GO:0007514, garland cell differentiation
+ GO:0007518, myoblast cell fate determination
+ GO:0009844, germination
+ GO:0009845, seed germination
+ GO:0009846, pollen germination
+ GO:0009847, spore germination
+ GO:0009957, epidermal cell fate specification
+ GO:0016360, determination of sensory organ precursor cell fate
+ GO:0045034, neuroblast cell division
+ GO:0045165, cell fate commitment
+ GO:0045166, protein secretion involved in cell fate commitment
+ GO:0045167, asymmetric protein localization involved in cell fate commitment
+ GO:0045168, cell-cell signaling involved in cell fate commitment
+ GO:0045700, regulation of spermatid nuclear differentiation
+ GO:0045701, negative regulation of spermatid nuclear differentiation
+ GO:0045702, positive regulation of spermatid nuclear differentiation
+ GO:0046331, lateral inhibition
+ GO:0046845, branch cell fate determination (sensu Insecta)
+ GO:0046846, tracheal placode cell fate determination (sensu Insecta)
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
617897 Accepted antigen presentation GO:0042590-42591
623045 Fixed true path problem [none]
627564 Fixed immunoglobulin GO:0042570-42571
653362 None JA biosynthesis & immune response ?? [none]
661069 None axolemma GO:0030673
663138 Accepted azurophil granule GO:0042582
663192 Accepted chromoplast membrane GO:0046862
663725 Fixed cell-associated; cell-bound [none]
664377 Accepted chromaffin granule GO:0042583-42584
664985 Accepted germinal vesicle GO:0042585
665002 Accepted glycogen particle GO:0042587
665004 Accepted glycosome membrane GO:0046860
665022 Accepted zymogen granule, zymogen granule membrane GO:0042588-42589
665688 Accepted specific granule GO:0042581
668450 Works For Me sulfate respiration [none]
669010 Accepted mesosome GO:0046868
669680 Fixed caveolae membrane [none]
671148 Accepted glyoxysomal membrane GO:0046861
671183 Accepted hydrogenosomal membrane GO:0046859
673036 None difference external & extrinsic? [none]
677487 Rejected myrosin grain [none]
677536 Fixed Arp2/3 protein complex binding [none]
679495 Fixed Copper and ion transport [none]
679514 Rejected spherosome [none]
679527 Rejected spheroplast [none]
679628 Rejected viral non structural protein [none]
680095 Rejected 3' mRNA BINDING PROTEIN [none]
680181 Accepted carotenoid transport GO:0046864-46867
681150 None make goid:8799 a synonym for goid:4121 [none]
681240 None obsoleting pheromone exporter terms [none]
681745 Accepted RuBisCO activase GO:0046863
681749 Fixed synonyms for ribulose-bisphosphate carboxylase (GO:0016984) [none]
683974 Works For Me sphingomyelin phosphodiesterases [none]
684638 Accepted particle-bound as synonym of insoluble fraction [none]
684651 Accepted soluble as synonym term for soluble fraction [none]
685207 Fixed %ghdftyhfty ; GO:0042586 [none]
685367 Fixed new function term: glucose binding lectin GO:0046871
685936 Fixed Calcium ion homeostasis [none]
686023 Fixed Terms for obsoletion [none]
686297 Accepted adding children terms to goid:16706 GO:0000907-00908
686299 Accepted add term: 6,7-dimethyl-8-ribityllumazine synthase GO:0000906
688012 None More proposed obsoletions [none]
688555 Fixed iron ion transport synonym [none]
688606 Accepted planar polarity GO:0001736-01738
688681 Fixed Proposed function term obsoletions [none]
689399 Accepted peptide deformylase ; EC 3.5.1.88 GO:0042586
693137 Fixed has GO:0015849 vanished? [none]
Statistics:
Component: 1191 terms, 73.5% defined (875 terms defined)
Function: 5340 terms, 58.4% defined (3117 terms defined)
Process: 6940 terms, 80.0% defined (5552 terms defined)
Total: 13471 terms, 70.8% defined (9544 terms defined)
Term errors
GO:0018987, osmoregulation
- term lost