GO Monthly Release Notes for December 2002
========================
Generated on Mon Oct 27 12:28:44 2003
Files used:
component old: 2.270 new: 2.285
function old: 2.549 new: 2.564
process old: 2.633 new: 2.648
definitions old: 2.852 new: 2.877
GO Slim: Generic.0208
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in component ontology (29 new terms)
GO:0030658 GO:0005623 MAH D 653178 transport vesicle membrane
GO:0016023
GO:0030659 GO:0005623 MAH D 653178 cytoplasmic vesicle membrane
GO:0016023
GO:0030660 GO:0005623 MAH D 653178 Golgi vesicle membrane
GO:0005794
GO:0016023
GO:0030661 GO:0005623 MAH D 653178 chitosome membrane
GO:0016023
GO:0030662 GO:0005623 MAH D 653178 coated vesicle membrane
GO:0016023
GO:0030663 GO:0005623 MAH D 653178 COPI coated vesicle membrane
GO:0016023
GO:0030664 GO:0005623 MAH D 653178 COPII coated vesicle membrane
GO:0016023
GO:0030665 GO:0005623 MAH D 653178 clathrin coated vesicle membrane
GO:0016023
GO:0030666 GO:0005623 MAH D 653178 endocytic vesicle membrane
GO:0016023
GO:0030667 GO:0005623 MAH D 653178 secretory granule membrane
GO:0016023
GO:0030668 GO:0005623 MAH D 653178 dense granule membrane
GO:0016023
GO:0030669 GO:0005623 MAH D 653178 clathrin-coated endocytic vesicle membrane
GO:0016023
GO:0030670 GO:0005623 MAH D 653178 phagocytic vesicle membrane
GO:0016023
GO:0030671 GO:0005623 MAH D 653178 clathrin-coated phagocytic vesicle membrane
GO:0016023
GO:0030672 GO:0005623 MAH D 653178 synaptic vesicle membrane
GO:0016023
GO:0042567 GO:0005615 JL D insulin-like growth factor ternary complex
GO:0042568 GO:0005615 JL D insulin-like growth factor binary complex
GO:0042570 GO:0005575 JL D 627564 immunoglobulin complex, membrane bound
GO:0005886
GO:0042571 GO:0005575 JL D 627564 immunoglobulin complex, circulating
GO:0005615
GO:0042575 GO:0005941 JL D DNA polymerase complex
GO:0046727 GO:0005575 AI D 648528 capsomere
GO:0046728 GO:0005575 AI D 648528 viral capsid (sensu Retroviridae)
GO:0046729 GO:0005575 AI D 648528 viral procapsid
GO:0046798 GO:0005575 AI D 648528 viral portal complex
GO:0046806 GO:0005575 AI D 648528 viral scaffold
GO:0046808 GO:0005634 AI D 648528 assemblon
GO:0046809 GO:0005634 AI D 648528 replication compartment
GO:0046816 GO:0005622 AI D 648528 virion transport vesicle
GO:0046818 GO:0005634 AI D 648528 dense nuclear body
New obsoletions in component ontology
GO:0001721, intermediate filament associated protein: represents a single gene product and not a complex.
GO:0001722, type I intermediate filament associated protein: represents a single gene product and not a complex.
GO:0001723, type II intermediate filament associated protein: represents a single gene product and not a complex.
GO:0001724, type III intermediate filament associated protein: represents a single gene product and not a complex.
GO:0017052, insulin-like growth factor binding protein: represents a single gene product and not a complex.
Term name changes in component ontology
GO:0000126: transcription factor TFIIIB --> transcription factor TFIIIB complex
GO:0000127: transcription factor TFIIIC --> transcription factor TFIIIC complex
GO:0000306: extrinsic vacuolar membrane protein --> extrinsic to vacuolar membrane
GO:0005577: fibrinogen --> fibrinogen complex
GO:0005616: larval serum protein --> larval serum protein complex
GO:0005639: nuclear inner membrane, integral protein --> integral to nuclear inner membrane
GO:0005660: delta-DNA polymerase cofactor --> delta-DNA polymerase cofactor complex
GO:0005668: selectivity factor SL1 --> selectivity factor SL1 complex
GO:0005669: TFIID complex --> transcription factor TFIID complex
GO:0005672: transcription factor TFIIA --> transcription factor TFIIA complex
GO:0005673: transcription factor TFIIE --> transcription factor TFIIE complex
GO:0005674: transcription factor TFIIF --> transcription factor TFIIF complex
GO:0005675: transcription factor TFIIH --> transcription factor TFIIH complex
GO:0005676: condensin --> condensin complex
GO:0005839: 20S core proteasome --> 20S core proteasome complex
GO:0005853: eukaryotic translation elongation factor 1 --> eukaryotic translation elongation factor 1 complex
GO:0005858: axonemal dynein --> axonemal dynein complex
GO:0005868: cytoplasmic dynein --> cytoplasmic dynein complex
GO:0005871: kinesin --> kinesin complex
GO:0005872: minus-end kinesin --> minus-end kinesin complex
GO:0005873: plus-end kinesin --> plus-end kinesin complex
GO:0005875: microtubule associated protein --> microtubule associated complex
GO:0005887: integral plasma membrane protein --> integral to plasma membrane
GO:0005888: integral plasma membrane proteoglycan --> proteoglycan integral to plasma membrane
GO:0005922: connexon --> connexon complex
GO:0008043: ferritin --> ferritin complex
GO:0008278: cohesin --> cohesin complex
GO:0016021: integral membrane protein --> integral to membrane
GO:0016222: procollagen-proline,2-oxoglutarate-4-dioxygenase complex --> procollagen-proline, 2-oxoglutarate-4-dioxygenase complex
GO:0016272: prefoldin --> prefoldin complex
GO:0016342: catenin --> catenin complex
GO:0016513: core-binding factor --> core-binding factor complex
GO:0016942: insulin-like growth factor receptor binding protein complex --> insulin-like growth factor binding protein complex
GO:0019013: nucleocapsid --> viral nucleocapsid
GO:0019773: 20S core proteasome, alpha-subunit --> 20S core proteasome, alpha-subunit complex
GO:0019774: 20S core proteasome, beta-subunit --> 20S core proteasome, beta-subunit complex
GO:0019814: immunoglobulin --> immunoglobulin complex
GO:0019897: extrinsic plasma membrane protein --> extrinsic to plasma membrane
GO:0019898: extrinsic membrane protein --> extrinsic to membrane
GO:0030173: Golgi membrane, integral protein --> integral to Golgi membrane
GO:0030285: synaptic vesicle membrane, integral protein --> integral to synaptic vesicle membrane
GO:0042272: nuclear RNA export factor --> nuclear RNA export factor complex
GO:0045203: integral protein of the external outer membrane (sensu Gram-negative Bacteria) --> integral to external outer membrane (sensu Gram-negative Bacteria)
GO:0046658: extrinsic membrane protein, GPI-anchored --> extrinsic to plasma membrane, GPI-anchored
New definitions for component ontology terms (29 new definitions)
GO:0000220, hydrogen-transporting ATPase V0 domain
GO:0000221, hydrogen-transporting ATPase V1 domain
GO:0005616, larval serum protein complex
GO:0005660, delta-DNA polymerase cofactor complex
GO:0005668, selectivity factor SL1 complex
GO:0005672, transcription factor TFIIA complex
GO:0005673, transcription factor TFIIE complex
GO:0005674, transcription factor TFIIF complex
GO:0005675, transcription factor TFIIH complex
GO:0005759, mitochondrial matrix
GO:0005853, eukaryotic translation elongation factor 1 complex
GO:0005870, actin capping protein of dynactin complex
GO:0005888, proteoglycan integral to plasma membrane
GO:0005900, oncostatin-M receptor complex
GO:0005958, DNA-dependent protein kinase complex
GO:0008043, ferritin complex
GO:0012506, vesicle membrane
GO:0016272, prefoldin complex
GO:0016471, hydrogen-translocating V-type ATPase complex
GO:0016942, insulin-like growth factor binding protein complex
GO:0017052, insulin-like growth factor binding protein
GO:0019015, viral genome
GO:0019029, helical viral capsid
GO:0019030, icosahedral viral capsid
GO:0019031, viral envelope
GO:0019033, viral tegument
GO:0019773, 20S core proteasome, alpha-subunit complex
GO:0019774, 20S core proteasome, beta-subunit complex
GO:0019814, immunoglobulin complex
New term merges in component ontology
GO:0005959 has been merged into GO:0005958, DNA-dependent protein kinase complex
Term movements in component ontology:
Terms movements under GO Slim term 'cellular_component ; GO:0005575'
+ GO:0003674, molecular_function
+ GO:0008435, anticoagulant
+ GO:0016172, antifreeze
+ GO:0016173, ice nucleation inhibitor
+ GO:0019012, virion
+ GO:0019013, viral nucleocapsid
+ GO:0019015, viral genome
+ GO:0019016, non-segmented viral genome
+ GO:0019017, segmented viral genome
+ GO:0019018, bipartite viral genome
+ GO:0019019, tripartite viral genome
+ GO:0019020, multipartite viral genome
+ GO:0019021, DNA viral genome
+ GO:0019022, RNA viral genome
+ GO:0019023, dsRNA viral genome
+ GO:0019024, ssRNA viral genome
+ GO:0019025, positive sense viral genome
+ GO:0019026, negative sense viral genome
+ GO:0019027, ambisense viral genome
+ GO:0019028, viral capsid
+ GO:0019029, helical viral capsid
+ GO:0019030, icosahedral viral capsid
+ GO:0019031, viral envelope
+ GO:0019032, viral glycoprotein
+ GO:0019033, viral tegument
+ GO:0019038, provirus
+ GO:0019814, immunoglobulin complex
Terms movements under GO Slim term 'extracellular ; GO:0005576'
- GO:0005601, classical-complement pathway C3/C5 convertase complex
- GO:0005602, complement component C1q complex
- GO:0005603, complement component C2 complex
- GO:0019012, virion
- GO:0019013, viral nucleocapsid
- GO:0019015, viral genome
- GO:0019016, non-segmented viral genome
- GO:0019017, segmented viral genome
- GO:0019018, bipartite viral genome
- GO:0019019, tripartite viral genome
- GO:0019020, multipartite viral genome
- GO:0019021, DNA viral genome
- GO:0019022, RNA viral genome
- GO:0019023, dsRNA viral genome
- GO:0019024, ssRNA viral genome
- GO:0019025, positive sense viral genome
- GO:0019026, negative sense viral genome
- GO:0019027, ambisense viral genome
- GO:0019028, viral capsid
- GO:0019029, helical viral capsid
- GO:0019030, icosahedral viral capsid
- GO:0019033, viral tegument
- GO:0019034, viral replication complex
- GO:0019038, provirus
- GO:0019814, immunoglobulin complex
Terms movements under GO Slim term 'extracellular space ; GO:0005615'
+ GO:0005601, classical-complement pathway C3/C5 convertase complex
+ GO:0005602, complement component C1q complex
+ GO:0005603, complement component C2 complex
Terms movements under GO Slim term 'nucleus ; GO:0005634'
+ GO:0019034, viral replication complex
Terms movements under GO Slim term 'cytoskeleton ; GO:0005856'
- GO:0001721, intermediate filament associated protein
- GO:0001722, type I intermediate filament associated protein
- GO:0001723, type II intermediate filament associated protein
- GO:0001724, type III intermediate filament associated protein
Terms movements under GO Slim term 'plasma membrane ; GO:0005886'
- GO:0019814, immunoglobulin complex
Terms movements under GO Slim term 'unlocalized ; GO:0005941'
- GO:0003674, molecular_function
+ GO:0005659, delta DNA polymerase complex
+ GO:0005660, delta-DNA polymerase cofactor complex
- GO:0008435, anticoagulant
+ GO:0008622, epsilon DNA polymerase complex
+ GO:0016035, zeta DNA polymerase complex
- GO:0016172, antifreeze
- GO:0016173, ice nucleation inhibitor
- GO:0017052, insulin-like growth factor binding protein
New terms in function ontology (9 new terms)
GO:0000772 GO:0005102 SGD D 641413 mating pheromone
GO:0001733 GO:0003824 MGI D galactosylceramide sulfotransferase
GO:0042569 GO:0005102 JL D APJ receptor binding
GO:0046789 GO:0005102 AI D 648528 host cell surface receptor binding
GO:0005488
GO:0046790 GO:0005488 AI D 648528 virion binding
GO:0046810 GO:0005488 AI D 648528 host cell extracellular matrix binding
GO:0046811 GO:0030234 AI D 648528 histone deacetylase inhibitor
GO:0046812 GO:0005488 AI D 648528 host cell surface binding
GO:0046817 GO:0004871 AI D 648528 chemokine receptor antagonist
GO:0005102
New obsoletions in function ontology
GO:0001597, apelin-like receptor: the function it represents does not exist.
Term name changes in function ontology
GO:0000246: sterol C-24(28) reductase --> delta24(24-1) sterol reductase
GO:0004342: glucosamine-6-phosphate isomerase --> glucosamine-6-phosphate deaminase
GO:0008398: lanosterol 14-alpha-demethylase --> sterol 14-demethylase
GO:0008486: diphosphoinositol polyphosphate phosphohydrolase --> diphosphoinositol-polyphosphate diphosphatase
GO:0008549: dynamin GTPase --> dynamine GTPase
GO:0008942: nitrite reductase [NAD(P)H2] --> nitrite reductase [NAD(P)H]
GO:0008986: pyruvate,water dikinase --> water pyruvate dikinase
GO:0009905: copalyl diphosphate synthase --> ent-copalyl diphosphate synthase
GO:0016972: sulfhydryl oxidase --> thiol oxidase
GO:0030552: 3',5'-cyclic AMP binding --> 3',5'-cAMP binding
GO:0030553: 3',5'-cyclic GMP binding --> 3',5'-cGMP binding
GO:0045130: keratan sulfate Gal-6-sulfotransferase --> keratan sulfotransferase
GO:0045174: dehydroascorbate reductase --> glutathione dehydrogenase (ascorbate)
GO:0046556: alpha-N-arabinofuranosidase --> alpha-L-arabinofuranosidase
New definitions for function ontology terms (32 new definitions)
GO:0001597, apelin-like receptor
GO:0004003, ATP dependent DNA helicase
GO:0004004, ATP dependent RNA helicase
GO:0004133, glycogen debranching enzyme
GO:0004448, isocitrate dehydrogenase
GO:0004495, mevaldate reductase
GO:0004723, calcium-dependent protein serine/threonine phosphatase
GO:0004759, serine esterase
GO:0005384, manganese ion transporter
GO:0005385, zinc ion transporter
GO:0008026, ATP dependent helicase
GO:0008094, DNA dependent adenosinetriphosphatase
GO:0008186, RNA dependent adenosinetriphosphatase
GO:0008398, sterol 14-demethylase
GO:0008486, diphosphoinositol-polyphosphate diphosphatase
GO:0008708, glucose dehydrogenase
GO:0008875, gluconate dehydrogenase
GO:0015085, calcium ion transporter
GO:0015086, cadmium ion transporter
GO:0015087, cobalt ion transporter
GO:0015095, magnesium ion transporter
GO:0015595, spermidine porter
GO:0016033, iron ion transporter
GO:0016972, thiol oxidase
GO:0017136, NAD-dependent histone deacetylase
GO:0018447, chloral hydrate dehydrogenase
GO:0018497, 1-chloro-2,2-bis(4'-chlorophenyl)ethane dehydrogenase
GO:0018702, 1,1-dichloro-2,2-bis(4'-chlorophenyl)ethylene dehalogenase
GO:0018827, 1-chloro-2,2-bis(4'-chlorophenyl)ethane dehydrochlorinase
GO:0018829, 1,1-dichloro-2,2-bis(4'-chlorophenyl)ethane dehydrochlorinase
GO:0030357, protein phosphatase type 2B
GO:0042027, cyclophilin-type peptidy-prolyl cis-trans isomerase
New term merges in function ontology
GO:0003981 has been merged into GO:0015020, glucuronosyltransferase
Term movements in function ontology:
Terms movements under GO Slim term 'receptor ; GO:0004872'
- GO:0001597, apelin-like receptor
Terms movements under GO Slim term 'binding ; GO:0005488'
- GO:0001597, apelin-like receptor
New terms in process ontology (138 new terms)
GO:0000740 GO:0008151 SGD D 641413 nuclear membrane fusion
GO:0000741 GO:0008151 SGD D 641413 karyogamy
GO:0000742 GO:0000003 SGD D 641413 karyogamy during conjugation with cellular fusion
GO:0007582
GO:0008151
GO:0000743 GO:0000003 SGD D 641413 nuclear migration during conjugation with cellular fusion
GO:0007582
GO:0008151
GO:0000744 GO:0008151 SGD D 641413 karyogamy during conjugation without cellular fusion
GO:0000745 GO:0008151 SGD D 641413 nuclear exchange during conjugation without cellular fusion
GO:0000746 GO:0000003 SGD D 641413 conjugation
GO:0007582
GO:0000747 GO:0000003 SGD D 641413 conjugation with cellular fusion
GO:0007582
GO:0000748 GO:0000003 SGD D 641413 conjugation without cellular fusion
GO:0007582
GO:0000749 GO:0000003 SGD D 641413 response to pheromone during conjugation with cellular fusion
GO:0007582
GO:0009605
GO:0009628
GO:0000750 GO:0000003 SGD D 641413 signal transduction during conjugation with cellular fusion
GO:0007165
GO:0007582
GO:0009605
GO:0009628
GO:0000751 GO:0000003 SGD D 641413 cell cycle arrest in response to pheromone
GO:0007049
GO:0007582
GO:0009605
GO:0009628
GO:0000752 GO:0000003 SGD D 641413 agglutination during conjugation with cellular fusion
GO:0007154
GO:0007582
GO:0009605
GO:0009628
GO:0000753 GO:0000003 SGD D 641413 cellular morphogenesis during conjugation with cellular fusion
GO:0007275
GO:0007582
GO:0008151
GO:0009605
GO:0009628
GO:0000754 GO:0000003 SGD D 641413 adaptation to pheromone during conjugation with cellular fusion
GO:0007582
GO:0009605
GO:0009628
GO:0000755 GO:0000003 SGD D 641413 cytogamy
GO:0007582
GO:0008151
GO:0000756 GO:0000003 SGD D 641413 response to pheromone during conjugation without cellular fusion
GO:0007582
GO:0009605
GO:0009628
GO:0000757 GO:0000003 SGD D 641413 signal transduction during conjugation without cellular fusion
GO:0007165
GO:0007582
GO:0009605
GO:0009628
GO:0000758 GO:0000003 SGD D 641413 agglutination during conjugation without cellular fusion
GO:0007154
GO:0007582
GO:0009605
GO:0009628
GO:0000759 GO:0000003 SGD D 641413 cellular morphogenesis during conjugation without cellular fusion
GO:0007275
GO:0007582
GO:0008151
GO:0009605
GO:0009628
GO:0000760 GO:0000003 SGD D 641413 adaptation to pheromone during conjugation without cellular fusion
GO:0007582
GO:0009605
GO:0009628
GO:0000761 GO:0000003 SGD D 641413 conjugant formation
GO:0007582
GO:0000762 GO:0000003 SGD D 641413 pheromone-induced unidirectional conjugation
GO:0007275
GO:0007582
GO:0000763 GO:0000003 SGD D 641413 cellular morphogenesis during unidirectional conjugation
GO:0007275
GO:0007582
GO:0008151
GO:0000764 GO:0000003 SGD D 641413 cellular morphogenesis during pheromone-induced unidirectional conjugation
GO:0007275
GO:0007582
GO:0008151
GO:0009605
GO:0009628
GO:0000765 GO:0000003 SGD D 641413 response to pheromone during pheromone-induced unidirectional conjugation
GO:0007275
GO:0007582
GO:0009605
GO:0009628
GO:0000766 GO:0000003 SGD D 641413 adaptation to pheromone during pheromone-induced unidirectional conjugation
GO:0007275
GO:0007582
GO:0009605
GO:0009628
GO:0000767 GO:0007275 SGD D 641413 cellular morphogenesis during conjugation
GO:0008151
GO:0000768 GO:0008151 SGD D 641413 syncytium formation by plasma membrane fusion
GO:0000769 GO:0008151 SGD D 641413 syncytium formation by mitosis without cell division
GO:0000770 GO:0015031 SGD D 641413 peptide pheromone export
GO:0000771 GO:0007154 SGD D 641413 agglutination
GO:0009957 GO:0007275 TAIR D 649271 epidermal cell fate specification
GO:0009958 GO:0009605 TAIR D 649271 positive gravitropism
GO:0009628
GO:0009959 GO:0009605 TAIR D 649271 negative gravitropism
GO:0009628
GO:0009960 GO:0007275 TAIR D 649271 endosperm development
GO:0009961 GO:0009719 TAIR D 649271 response to 1-aminocyclopropane-1-carboxylic acid
GO:0009962 GO:0006519 TAIR D 649271 regulation of flavonoid biosynthesis
GO:0008152
GO:0009058
GO:0019748
GO:0009963 GO:0006519 TAIR D 649271 positive regulation of flavonoid biosynthesis
GO:0008152
GO:0009058
GO:0019748
GO:0009964 GO:0006519 TAIR D 649271 negative regulation of flavonoid biosynthesis
GO:0008152
GO:0009058
GO:0019748
GO:0009965 GO:0007275 TAIR D 649271 leaf morphogenesis
GO:0009966 GO:0007165 TAIR D 649271 regulation of signal transduction
GO:0009967 GO:0007165 TAIR D 649271 positive regulation of signal transduction
GO:0009968 GO:0007165 TAIR D 649271 negative regulation of signal transduction
GO:0009969 GO:0005975 TAIR D 649271 xyloglucan biosynthesis
GO:0009058
GO:0009970 GO:0006950 TAIR D 649271 response to sulfate starvation
GO:0009607
GO:0009971 GO:0007010 TAIR D 649271 male meiotic spindle assembly (sensu Viridiplantae)
GO:0007049
GO:0009972 GO:0008152 TAIR D 649271 cytidine deamination
GO:0009056
GO:0042572 GO:0008152 JL D retinol metabolism
GO:0042573 GO:0008152 JL D retinoic acid metabolism
GO:0042574 GO:0008152 JL D retinal metabolism
GO:0046718 GO:0016032 AI D 648528 viral entry
GO:0046719 GO:0016032 AI D 648528 regulation of viral protein levels
GO:0046720 GO:0007582 AI D 598460 citric acid secretion
GO:0046721 GO:0007582 AI D 598460 formic acid secretion
GO:0046722 GO:0007582 AI D 598460 lactic acid secretion
GO:0046723 GO:0007582 AI D 598460 malic acid secretion
GO:0046724 GO:0007582 AI D 598460 oxalic acid secretion
GO:0046725 GO:0016032 AI D 648528 negative regulation of viral protein levels
GO:0046726 GO:0016032 AI D 648528 positive regulation of viral protein levels
GO:0046730 GO:0016032 AI D 648528 viral induction of host immune response
GO:0030383
GO:0046731 GO:0016032 AI D 648528 passive viral induction of host immune response
GO:0030383
GO:0046732 GO:0016032 AI D 648528 active viral induction of host immune response
GO:0030383
GO:0046733 GO:0016032 AI D 648528 passive viral induction of humoral immune response
GO:0030383
GO:0046734 GO:0016032 AI D 648528 passive viral induction of cell-mediated immune response
GO:0030383
GO:0046735 GO:0016032 AI D 648528 passive viral induction of innate immune response
GO:0030383
GO:0046736 GO:0016032 AI D 648528 active viral induction of humoral immune response
GO:0030383
GO:0046737 GO:0016032 AI D 648528 active viral induction of cell-mediated immune response
GO:0030383
GO:0046738 GO:0016032 AI D 648528 active viral induction of innate immune response
GO:0030383
GO:0046739 GO:0016032 AI D 648528 viral spread within host
GO:0046740 GO:0016032 AI D 648528 viral spread within host, cell to cell
GO:0046741 GO:0016032 AI D 648528 viral spread within host, tissue to tissue
GO:0046742 GO:0015031 AI D 648528 nuclear viral capsid transport
GO:0016032
GO:0046743 GO:0006810 AI D 648528 cytoplasmic viral capsid transport
GO:0015031
GO:0016032
GO:0046744 GO:0016032 AI D 648528 viral capsid envelopment
GO:0046745 GO:0016032 AI D 648528 viral capsid re-envelopment
GO:0046746 GO:0016032 AI D 648528 nuclear membrane viral budding during viral capsid re-envelopment
GO:0046747 GO:0016032 AI D 648528 Golgi membrane viral budding during viral capsid re-envelopment
GO:0046748 GO:0016032 AI D 648528 ER membrane viral budding during viral capsid re-envelopment
GO:0046749 GO:0016032 AI D 648528 nuclear membrane viral budding during viral capsid envelopment
GO:0046750 GO:0016032 AI D 648528 Golgi membrane viral budding during viral capsid envelopment
GO:0046751 GO:0016032 AI D 648528 ER membrane viral budding during viral capsid envelopment
GO:0046752 GO:0016032 AI D 648528 nuclear localization of viral capsid precursors
GO:0019538
GO:0046753 GO:0016032 AI D 648528 non-lytic viral release
GO:0046754 GO:0016032 AI D 648528 non-lytic viral exocytosis
GO:0046755 GO:0016032 AI D 648528 non-lytic viral budding
GO:0046756 GO:0016032 AI D 648528 lytic viral exocytosis
GO:0046757 GO:0016032 AI D 648528 lytic ER membrane viral budding
GO:0046758 GO:0016032 AI D 648528 lytic Golgi membrane viral budding
GO:0046759 GO:0016032 AI D 648528 lytic plasma membrane viral budding
GO:0046760 GO:0016032 AI D 648528 non-lytic Golgi membrane viral budding
GO:0046761 GO:0016032 AI D 648528 non-lytic plasma membrane viral budding
GO:0046762 GO:0016032 AI D 648528 non-lytic ER membrane viral budding
GO:0046763 GO:0016032 AI D 648528 Golgi membrane viral budding
GO:0046764 GO:0016032 AI D 648528 ER membrane viral budding
GO:0046765 GO:0016032 AI D 648528 nuclear membrane viral budding
GO:0046766 GO:0016032 AI D 648528 plasma membrane viral budding
GO:0046767 GO:0016032 AI D 648528 plasma membrane viral budding during viral capsid envelopment
GO:0046768 GO:0016032 AI D 648528 plasma membrane viral budding during viral capsid re-envelopment
GO:0046769 GO:0016032 AI D 648528 inner nuclear membrane viral budding during viral capsid re-envelopment
GO:0046770 GO:0016032 AI D 648528 outer nuclear membrane viral budding during viral capsid re-envelopment
GO:0046771 GO:0016032 AI D 648528 inner nuclear membrane viral budding during viral capsid envelopment
GO:0046772 GO:0016032 AI D 648528 outer nuclear membrane viral budding during viral capsid envelopment
GO:0046773 GO:0016032 AI D 648528 viral inhibition of host cell protein biosynthesis shutoff
GO:0030383
GO:0046774 GO:0016032 AI D 648528 viral inhibition of intracellular interferon activity
GO:0030383
GO:0046775 GO:0016032 AI D 648528 viral inhibition of host cytokine production
GO:0030383
GO:0046776 GO:0016032 AI D 648528 viral inhibition of MHC class I cell surface presentation
GO:0030383
GO:0046777 GO:0006464 AI D 648528 autophosphorylation
GO:0008152
GO:0046778 GO:0016032 AI D 648528 viral perturbation of host mRNA processing
GO:0030383
GO:0046779 GO:0016032 AI D 648528 viral inhibition of expression of host genes with introns
GO:0030383
GO:0046780 GO:0016032 AI D 648528 viral inhibition of host mRNA splicing
GO:0030383
GO:0046781 GO:0016032 AI D 648528 viral dispersion of host splicing factors
GO:0030383
GO:0046782 GO:0006350 AI D 648528 regulation of viral transcription
GO:0016032
GO:0046783 GO:0006412 AI D 648528 viral perturbation of polysomes
GO:0016032
GO:0030383
GO:0046784 GO:0006810 AI D 648528 intronless viral mRNA-nucleus export
GO:0008152
GO:0046785 GO:0007010 AI D 648528 microtubule polymerization
GO:0046786 GO:0016032 AI D 648528 viral replication complex formation and maintenance
GO:0046787 GO:0006259 AI D 648528 viral DNA repair
GO:0016032
GO:0046788 GO:0016032 AI D 648528 viral egress
GO:0046791 GO:0016032 AI D 648528 viral inhibition of host complement neutralization
GO:0030383
GO:0046792 GO:0007049 AI D 648528 viral inhibition of cell cycle arrest
GO:0016032
GO:0030383
GO:0046793 GO:0016032 AI D 648528 virus-induced modification of host RNA polymerase II
GO:0030383
GO:0046794 GO:0006810 AI D 648528 virion transport
GO:0046795 GO:0006810 AI D 648528 intracellular virion transport
GO:0046796 GO:0006810 AI D 648528 viral genome transport
GO:0046797 GO:0016032 AI D 648528 viral procapsid maturation
GO:0046799 GO:0006259 AI D 648528 recruitment of helicase-primase complex to DNA lesions
GO:0016032
GO:0046800 GO:0016032 AI D 648528 enhancement of virulence
GO:0046801 GO:0015031 AI D 648528 intracellular viral capsid transport
GO:0016032
GO:0046802 GO:0006810 AI D 648528 nuclear egress of viral procapsid
GO:0015031
GO:0016032
GO:0046803 GO:0016032 AI D 648528 reduction of virulence
GO:0046804 GO:0006464 AI D 648528 protein-protein cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide
GO:0046805 GO:0006464 AI D 648528 protein-heme linkage via 1'-L-histidine
GO:0019538
GO:0046807 GO:0016032 AI D 648528 viral scaffold assembly and maintenance
GO:0046813 GO:0016032 AI D 648528 virion attachment, binding of host cell surface receptor
GO:0046814 GO:0016032 AI D 648528 virion attachment, binding of host cell surface co-receptor
GO:0046815 GO:0016032 AI D 648528 genome retention in viral capsid
GO:0046819 GO:0019538 AI D 651122 type V protein secretion system
New obsoletions in process ontology
GO:0000174, inactivation of MAPK (mating sensu Saccharomyces): is a gene product specific term.
GO:0000284, shmoo orientation: is an organisms specific term. The entire branch of the ontology was reorganized to be more generally applicable. Please consider the process node 'cellular morphogenesis during conjugation with cellular fusion; GO:0000753'.
GO:0006945, nuclear fusion during karyogamy: is redundany outside the context of Saccharomyces biology.
GO:0007244, MAPKKK cascade (mating sensu Saccharomyces): is a gene product specific term.
GO:0007245, activation of MAPKKK (mating sensu Saccharomyces): is a gene product specific term.
GO:0007246, activation of MAPKK (mating sensu Saccharomyces): is a gene product specific term.
GO:0007247, activation of MAPK (mating sensu Saccharomyces): is a gene product specific term.
GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces): is a gene product specific term.
GO:0007327, pheromone catabolism: is not a unique process.
GO:0007335, karyogamy: this process is more common than its original location in the ontology and its definition would suggest. A new term with the same term name was created at a more general location.
GO:0030444, microtubule depolymerization during nuclear congression: the entire branch of the ontology was changed .
GO:0030455, MAPKKK cascade (mating sensu Fungi): is a gene product specific term.
GO:0030456, activation of MAPK (mating sensu Fungi): is a gene product specific term.
GO:0030457, activation of MAPKK (mating sensu Fungi): is a gene product specific term.
GO:0030458, activation of MAPKKK (mating sensu Fungi): is a gene product specific term.
GO:0030459, inactivation of MAPK (mating sensu Fungi): is a gene product specific term.
GO:0030460, nuclear translocation of MAPK (mating sensu Fungi): is a gene product specific term.
GO:0046542, alpha-factor export: is a gene product based term and it does not involve a unique process. Please consider the process node 'protein transport; GO:0015833'.
GO:0046614, pheromone catabolism (sensu Saccharomyces): is not a unique process.
GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces): there is no evidence that this process is unique to Saccharomyces.
Term name changes in process ontology
GO:0006405: nuclear RNA-nucleus export --> RNA-nucleus export
GO:0006621: ER retention --> protein-ER retention
GO:0007323: pheromone processing --> peptide pheromone maturation
GO:0009291: conjugation (sensu Bacteria) --> unidirectional conjugation
GO:0009292: genetic exchange --> genetic transfer
GO:0018182: protein-heme linkage via L-histidine --> protein-heme linkage via 3'-L-histidine
GO:0019067: viral assembly, maturation, and release --> viral assembly, maturation, egress, and release
GO:0019078: viral budding --> lytic viral budding
GO:0019236: pheromone response --> response to pheromone
GO:0045048: ER insertion --> protein-ER insertion
GO:0045053: Golgi retention --> protein-Golgi retention
New definitions for process ontology terms (16 new definitions)
GO:0000284, shmoo orientation
GO:0006948, viral-induced cell-cell fusion
GO:0007323, peptide pheromone maturation
GO:0009292, genetic transfer
GO:0009630, gravitropism
GO:0015628, type II protein (Sec) secretion system
GO:0016482, cytoplasmic transport
GO:0019589, glycerol fermentation to propane-1,3-diol
GO:0030444, microtubule depolymerization during nuclear congression
GO:0030456, activation of MAPK (mating sensu Fungi)
GO:0030457, activation of MAPKK (mating sensu Fungi)
GO:0030458, activation of MAPKKK (mating sensu Fungi)
GO:0030459, inactivation of MAPK (mating sensu Fungi)
GO:0030460, nuclear translocation of MAPK (mating sensu Fungi)
GO:0045026, plasma membrane fusion
GO:0046453, dipyrrin metabolism
New term merges in process ontology
GO:0000218 has been merged into GO:0000755, cytogamy
GO:0006946 has been merged into GO:0000743, nuclear migration during conjugation with cellular fusion
GO:0006947 has been merged into GO:0045026, plasma membrane fusion
GO:0007322 has been merged into GO:0000747, conjugation with cellular fusion
GO:0007324 has been merged into GO:0007323, peptide pheromone maturation
GO:0007325 has been merged into GO:0000770, peptide pheromone export
GO:0007326 has been merged into GO:0007323, peptide pheromone maturation
GO:0007328 has been merged into GO:0000749, response to pheromone during conjugation with cellular fusion
GO:0007330 has been merged into GO:0000750, signal transduction during conjugation with cellular fusion
GO:0007331 has been merged into GO:0000754, adaptation to pheromone during conjugation with cellular fusion
GO:0007332 has been merged into GO:0000753, cellular morphogenesis during conjugation with cellular fusion
GO:0007334 has been merged into GO:0000752, agglutination during conjugation with cellular fusion
GO:0030434 has been merged into GO:0000749, response to pheromone during conjugation with cellular fusion
GO:0030453 has been merged into GO:0000754, adaptation to pheromone during conjugation with cellular fusion
GO:0030454 has been merged into GO:0000750, signal transduction during conjugation with cellular fusion
GO:0030461 has been merged into GO:0000747, conjugation with cellular fusion
GO:0030462 has been merged into GO:0000755, cytogamy
GO:0030477 has been merged into GO:0000747, conjugation with cellular fusion
GO:0030571 has been merged into GO:0000751, cell cycle arrest in response to pheromone
GO:0046613 has been merged into GO:0007323, peptide pheromone maturation
Term movements in process ontology:
Terms movements under GO Slim term 'reproduction ; GO:0000003'
- GO:0000065, nuclear migration (sensu Saccharomyces)
- GO:0000174, inactivation of MAPK (mating sensu Saccharomyces)
- GO:0000284, shmoo orientation
+ GO:0000321, re-entry into mitotic cell cycle after pheromone arrest
- GO:0006945, nuclear fusion during karyogamy
- GO:0007244, MAPKKK cascade (mating sensu Saccharomyces)
- GO:0007245, activation of MAPKKK (mating sensu Saccharomyces)
- GO:0007246, activation of MAPKK (mating sensu Saccharomyces)
- GO:0007247, activation of MAPK (mating sensu Saccharomyces)
- GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces)
- GO:0007335, karyogamy
+ GO:0009291, unidirectional conjugation
- GO:0030444, microtubule depolymerization during nuclear congression
- GO:0046542, alpha-factor export
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
- GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces)
Terms movements under GO Slim term 'protein modification ; GO:0006464'
- GO:0007327, pheromone catabolism
- GO:0046542, alpha-factor export
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010'
- GO:0000284, shmoo orientation
- GO:0030444, microtubule depolymerization during nuclear congression
Terms movements under GO Slim term 'cell cycle ; GO:0007049'
- GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces)
Terms movements under GO Slim term 'signal transduction ; GO:0007165'
- GO:0000174, inactivation of MAPK (mating sensu Saccharomyces)
- GO:0007244, MAPKKK cascade (mating sensu Saccharomyces)
- GO:0007245, activation of MAPKKK (mating sensu Saccharomyces)
- GO:0007246, activation of MAPKK (mating sensu Saccharomyces)
- GO:0007247, activation of MAPK (mating sensu Saccharomyces)
- GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces)
- GO:0030455, MAPKKK cascade (mating sensu Fungi)
- GO:0030456, activation of MAPK (mating sensu Fungi)
- GO:0030457, activation of MAPKK (mating sensu Fungi)
- GO:0030458, activation of MAPKKK (mating sensu Fungi)
- GO:0030459, inactivation of MAPK (mating sensu Fungi)
- GO:0030460, nuclear translocation of MAPK (mating sensu Fungi)
Terms movements under GO Slim term 'physiological processes ; GO:0007582'
+ GO:0000321, re-entry into mitotic cell cycle after pheromone arrest
+ GO:0009291, unidirectional conjugation
Terms movements under GO Slim term 'cell growth and/or maintenance ; GO:0008151'
- GO:0000065, nuclear migration (sensu Saccharomyces)
- GO:0000174, inactivation of MAPK (mating sensu Saccharomyces)
- GO:0000284, shmoo orientation
- GO:0006945, nuclear fusion during karyogamy
- GO:0007244, MAPKKK cascade (mating sensu Saccharomyces)
- GO:0007245, activation of MAPKKK (mating sensu Saccharomyces)
- GO:0007246, activation of MAPKK (mating sensu Saccharomyces)
- GO:0007247, activation of MAPK (mating sensu Saccharomyces)
- GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces)
- GO:0007335, karyogamy
- GO:0007338, fertilization (sensu Animalia)
- GO:0007339, binding of sperm to zona pellucida
- GO:0007340, acrosome reaction
- GO:0007341, penetration of zona pellucida
- GO:0007343, egg activation
- GO:0009566, fertilization
- GO:0009567, double fertilization (sensu Magnoliophyta)
- GO:0009677, double fertilization (sensu Gnetophyta)
- GO:0018985, pronuclear envelope synthesis
- GO:0030444, microtubule depolymerization during nuclear congression
- GO:0045729, respiratory burst at fertilization
- GO:0046542, alpha-factor export
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
- GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces)
Terms movements under GO Slim term 'catabolism ; GO:0009056'
- GO:0007327, pheromone catabolism
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
Terms movements under GO Slim term 'response to external stimulus ; GO:0009605'
- GO:0000174, inactivation of MAPK (mating sensu Saccharomyces)
+ GO:0000321, re-entry into mitotic cell cycle after pheromone arrest
- GO:0007244, MAPKKK cascade (mating sensu Saccharomyces)
- GO:0007245, activation of MAPKKK (mating sensu Saccharomyces)
- GO:0007246, activation of MAPKK (mating sensu Saccharomyces)
- GO:0007247, activation of MAPK (mating sensu Saccharomyces)
- GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces)
- GO:0007323, peptide pheromone maturation
- GO:0007327, pheromone catabolism
- GO:0046542, alpha-factor export
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
- GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces)
Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628'
- GO:0000174, inactivation of MAPK (mating sensu Saccharomyces)
+ GO:0000321, re-entry into mitotic cell cycle after pheromone arrest
- GO:0007244, MAPKKK cascade (mating sensu Saccharomyces)
- GO:0007245, activation of MAPKKK (mating sensu Saccharomyces)
- GO:0007246, activation of MAPKK (mating sensu Saccharomyces)
- GO:0007247, activation of MAPK (mating sensu Saccharomyces)
- GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces)
- GO:0007323, peptide pheromone maturation
- GO:0007327, pheromone catabolism
- GO:0046542, alpha-factor export
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
- GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces)
Terms movements under GO Slim term 'protein transport ; GO:0015031'
+ GO:0015869, DNA-protein complex transport
Terms movements under GO Slim term 'protein metabolism ; GO:0019538'
- GO:0017003, protein-heme linkage
- GO:0018182, protein-heme linkage via 3'-L-histidine
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
598460 Works For Me Children of Digestion GO:0046720-46724
641413 None Overhaul 'mating (sensu Fungi)' branch GO:0000740-00772
647949 Fixed Midori, Some Viral Term changes GO:0046718-46719
648528 Accepted Some new Viral GO Terms GO:0046718-46719 GO:0046725-46818
649271 None tair process terms GO:0009957-09972
650815 Rejected heme biosyn true path violation? [none]
651122 Accepted type V protein secretion system GO:0046819
653178 Accepted vesicle membrane terms GO:0030658-30672
653183 Fixed synaptic vesicle [none]
653454 Accepted add plasmalemma as as a synonym [none]
Statistics:
Component: 1153 terms, 69.6% defined (803 terms defined)
Function: 5307 terms, 54.9% defined (2914 terms defined)
Process: 6879 terms, 78.8% defined (5418 terms defined)
Total: 13339 terms, 68.5% defined (9135 terms defined)
Term errors
none