GO Monthly Release Notes for December 2002
========================
Generated on Mon Oct 27 12:28:44 2003

Files used:
component	old: 2.270	new: 2.285
function 	old: 2.549	new: 2.564
process  	old: 2.633	new: 2.648
definitions	old: 2.852	new: 2.877
GO Slim: 	Generic.0208

Key:

|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941  GO:0009536  TAIR  D  SF:575119  chloroplast envelope
               (obs)

1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name

Columns are tab-delimited and can be imported into Excel for ease of reading.

New terms in component ontology (29 new terms)
GO:0030658	GO:0005623	MAH	D	653178	transport vesicle membrane
          	GO:0016023
GO:0030659	GO:0005623	MAH	D	653178	cytoplasmic vesicle membrane
          	GO:0016023
GO:0030660	GO:0005623	MAH	D	653178	Golgi vesicle membrane
          	GO:0005794
          	GO:0016023
GO:0030661	GO:0005623	MAH	D	653178	chitosome membrane
          	GO:0016023
GO:0030662	GO:0005623	MAH	D	653178	coated vesicle membrane
          	GO:0016023
GO:0030663	GO:0005623	MAH	D	653178	COPI coated vesicle membrane
          	GO:0016023
GO:0030664	GO:0005623	MAH	D	653178	COPII coated vesicle membrane
          	GO:0016023
GO:0030665	GO:0005623	MAH	D	653178	clathrin coated vesicle membrane
          	GO:0016023
GO:0030666	GO:0005623	MAH	D	653178	endocytic vesicle membrane
          	GO:0016023
GO:0030667	GO:0005623	MAH	D	653178	secretory granule membrane
          	GO:0016023
GO:0030668	GO:0005623	MAH	D	653178	dense granule membrane
          	GO:0016023
GO:0030669	GO:0005623	MAH	D	653178	clathrin-coated endocytic vesicle membrane
          	GO:0016023
GO:0030670	GO:0005623	MAH	D	653178	phagocytic vesicle membrane
          	GO:0016023
GO:0030671	GO:0005623	MAH	D	653178	clathrin-coated phagocytic vesicle membrane
          	GO:0016023
GO:0030672	GO:0005623	MAH	D	653178	synaptic vesicle membrane
          	GO:0016023
GO:0042567	GO:0005615	JL	D	      	insulin-like growth factor ternary complex
GO:0042568	GO:0005615	JL	D	      	insulin-like growth factor binary complex
GO:0042570	GO:0005575	JL	D	627564	immunoglobulin complex, membrane bound
          	GO:0005886
GO:0042571	GO:0005575	JL	D	627564	immunoglobulin complex, circulating
          	GO:0005615
GO:0042575	GO:0005941	JL	D	      	DNA polymerase complex
GO:0046727	GO:0005575	AI	D	648528	capsomere
GO:0046728	GO:0005575	AI	D	648528	viral capsid (sensu Retroviridae)
GO:0046729	GO:0005575	AI	D	648528	viral procapsid
GO:0046798	GO:0005575	AI	D	648528	viral portal complex
GO:0046806	GO:0005575	AI	D	648528	viral scaffold
GO:0046808	GO:0005634	AI	D	648528	assemblon
GO:0046809	GO:0005634	AI	D	648528	replication compartment
GO:0046816	GO:0005622	AI	D	648528	virion transport vesicle
GO:0046818	GO:0005634	AI	D	648528	dense nuclear body


New obsoletions in component ontology
GO:0001721, intermediate filament associated protein: represents a single gene product and not a complex.
GO:0001722, type I intermediate filament associated protein: represents a single gene product and not a complex.
GO:0001723, type II intermediate filament associated protein: represents a single gene product and not a complex.
GO:0001724, type III intermediate filament associated protein: represents a single gene product and not a complex.
GO:0017052, insulin-like growth factor binding protein: represents a single gene product and not a complex.


Term name changes in component ontology
GO:0000126: transcription factor TFIIIB --> transcription factor TFIIIB complex
GO:0000127: transcription factor TFIIIC --> transcription factor TFIIIC complex
GO:0000306: extrinsic vacuolar membrane protein --> extrinsic to vacuolar membrane
GO:0005577: fibrinogen --> fibrinogen complex
GO:0005616: larval serum protein --> larval serum protein complex
GO:0005639: nuclear inner membrane, integral protein --> integral to nuclear inner membrane
GO:0005660: delta-DNA polymerase cofactor --> delta-DNA polymerase cofactor complex
GO:0005668: selectivity factor SL1 --> selectivity factor SL1 complex
GO:0005669: TFIID complex --> transcription factor TFIID complex
GO:0005672: transcription factor TFIIA --> transcription factor TFIIA complex
GO:0005673: transcription factor TFIIE --> transcription factor TFIIE complex
GO:0005674: transcription factor TFIIF --> transcription factor TFIIF complex
GO:0005675: transcription factor TFIIH --> transcription factor TFIIH complex
GO:0005676: condensin --> condensin complex
GO:0005839: 20S core proteasome --> 20S core proteasome complex
GO:0005853: eukaryotic translation elongation factor 1 --> eukaryotic translation elongation factor 1 complex
GO:0005858: axonemal dynein --> axonemal dynein complex
GO:0005868: cytoplasmic dynein --> cytoplasmic dynein complex
GO:0005871: kinesin --> kinesin complex
GO:0005872: minus-end kinesin --> minus-end kinesin complex
GO:0005873: plus-end kinesin --> plus-end kinesin complex
GO:0005875: microtubule associated protein --> microtubule associated complex
GO:0005887: integral plasma membrane protein --> integral to plasma membrane
GO:0005888: integral plasma membrane proteoglycan --> proteoglycan integral to plasma membrane
GO:0005922: connexon --> connexon complex
GO:0008043: ferritin --> ferritin complex
GO:0008278: cohesin --> cohesin complex
GO:0016021: integral membrane protein --> integral to membrane
GO:0016222: procollagen-proline,2-oxoglutarate-4-dioxygenase complex --> procollagen-proline, 2-oxoglutarate-4-dioxygenase complex
GO:0016272: prefoldin --> prefoldin complex
GO:0016342: catenin --> catenin complex
GO:0016513: core-binding factor --> core-binding factor complex
GO:0016942: insulin-like growth factor receptor binding protein complex --> insulin-like growth factor binding protein complex
GO:0019013: nucleocapsid --> viral nucleocapsid
GO:0019773: 20S core proteasome, alpha-subunit --> 20S core proteasome, alpha-subunit complex
GO:0019774: 20S core proteasome, beta-subunit --> 20S core proteasome, beta-subunit complex
GO:0019814: immunoglobulin --> immunoglobulin complex
GO:0019897: extrinsic plasma membrane protein --> extrinsic to plasma membrane
GO:0019898: extrinsic membrane protein --> extrinsic to membrane
GO:0030173: Golgi membrane, integral protein --> integral to Golgi membrane
GO:0030285: synaptic vesicle membrane, integral protein --> integral to synaptic vesicle membrane
GO:0042272: nuclear RNA export factor --> nuclear RNA export factor complex
GO:0045203: integral protein of the external outer membrane (sensu Gram-negative Bacteria) --> integral to external outer membrane (sensu Gram-negative Bacteria)
GO:0046658: extrinsic membrane protein, GPI-anchored --> extrinsic to plasma membrane, GPI-anchored


New definitions for component ontology terms (29 new definitions)
GO:0000220, hydrogen-transporting ATPase V0 domain
GO:0000221, hydrogen-transporting ATPase V1 domain
GO:0005616, larval serum protein complex
GO:0005660, delta-DNA polymerase cofactor complex
GO:0005668, selectivity factor SL1 complex
GO:0005672, transcription factor TFIIA complex
GO:0005673, transcription factor TFIIE complex
GO:0005674, transcription factor TFIIF complex
GO:0005675, transcription factor TFIIH complex
GO:0005759, mitochondrial matrix
GO:0005853, eukaryotic translation elongation factor 1 complex
GO:0005870, actin capping protein of dynactin complex
GO:0005888, proteoglycan integral to plasma membrane
GO:0005900, oncostatin-M receptor complex
GO:0005958, DNA-dependent protein kinase complex
GO:0008043, ferritin complex
GO:0012506, vesicle membrane
GO:0016272, prefoldin complex
GO:0016471, hydrogen-translocating V-type ATPase complex
GO:0016942, insulin-like growth factor binding protein complex
GO:0017052, insulin-like growth factor binding protein
GO:0019015, viral genome
GO:0019029, helical viral capsid
GO:0019030, icosahedral viral capsid
GO:0019031, viral envelope
GO:0019033, viral tegument
GO:0019773, 20S core proteasome, alpha-subunit complex
GO:0019774, 20S core proteasome, beta-subunit complex
GO:0019814, immunoglobulin complex


New term merges in component ontology
GO:0005959 has been merged into GO:0005958, DNA-dependent protein kinase complex


Term movements in component ontology:
Terms movements under GO Slim term 'cellular_component ; GO:0005575'
+ GO:0003674, molecular_function
+ GO:0008435, anticoagulant
+ GO:0016172, antifreeze
+ GO:0016173, ice nucleation inhibitor
+ GO:0019012, virion
+ GO:0019013, viral nucleocapsid
+ GO:0019015, viral genome
+ GO:0019016, non-segmented viral genome
+ GO:0019017, segmented viral genome
+ GO:0019018, bipartite viral genome
+ GO:0019019, tripartite viral genome
+ GO:0019020, multipartite viral genome
+ GO:0019021, DNA viral genome
+ GO:0019022, RNA viral genome
+ GO:0019023, dsRNA viral genome
+ GO:0019024, ssRNA viral genome
+ GO:0019025, positive sense viral genome
+ GO:0019026, negative sense viral genome
+ GO:0019027, ambisense viral genome
+ GO:0019028, viral capsid
+ GO:0019029, helical viral capsid
+ GO:0019030, icosahedral viral capsid
+ GO:0019031, viral envelope
+ GO:0019032, viral glycoprotein
+ GO:0019033, viral tegument
+ GO:0019038, provirus
+ GO:0019814, immunoglobulin complex

Terms movements under GO Slim term 'extracellular ; GO:0005576'
- GO:0005601, classical-complement pathway C3/C5 convertase complex
- GO:0005602, complement component C1q complex
- GO:0005603, complement component C2 complex
- GO:0019012, virion
- GO:0019013, viral nucleocapsid
- GO:0019015, viral genome
- GO:0019016, non-segmented viral genome
- GO:0019017, segmented viral genome
- GO:0019018, bipartite viral genome
- GO:0019019, tripartite viral genome
- GO:0019020, multipartite viral genome
- GO:0019021, DNA viral genome
- GO:0019022, RNA viral genome
- GO:0019023, dsRNA viral genome
- GO:0019024, ssRNA viral genome
- GO:0019025, positive sense viral genome
- GO:0019026, negative sense viral genome
- GO:0019027, ambisense viral genome
- GO:0019028, viral capsid
- GO:0019029, helical viral capsid
- GO:0019030, icosahedral viral capsid
- GO:0019033, viral tegument
- GO:0019034, viral replication complex
- GO:0019038, provirus
- GO:0019814, immunoglobulin complex

Terms movements under GO Slim term 'extracellular space ; GO:0005615'
+ GO:0005601, classical-complement pathway C3/C5 convertase complex
+ GO:0005602, complement component C1q complex
+ GO:0005603, complement component C2 complex

Terms movements under GO Slim term 'nucleus ; GO:0005634'
+ GO:0019034, viral replication complex

Terms movements under GO Slim term 'cytoskeleton ; GO:0005856'
- GO:0001721, intermediate filament associated protein
- GO:0001722, type I intermediate filament associated protein
- GO:0001723, type II intermediate filament associated protein
- GO:0001724, type III intermediate filament associated protein

Terms movements under GO Slim term 'plasma membrane ; GO:0005886'
- GO:0019814, immunoglobulin complex

Terms movements under GO Slim term 'unlocalized ; GO:0005941'
- GO:0003674, molecular_function
+ GO:0005659, delta DNA polymerase complex
+ GO:0005660, delta-DNA polymerase cofactor complex
- GO:0008435, anticoagulant
+ GO:0008622, epsilon DNA polymerase complex
+ GO:0016035, zeta DNA polymerase complex
- GO:0016172, antifreeze
- GO:0016173, ice nucleation inhibitor
- GO:0017052, insulin-like growth factor binding protein



New terms in function ontology (9 new terms)
GO:0000772	GO:0005102	SGD	D	641413	mating pheromone
GO:0001733	GO:0003824	MGI	D	      	galactosylceramide sulfotransferase
GO:0042569	GO:0005102	JL	D	      	APJ receptor binding
GO:0046789	GO:0005102	AI	D	648528	host cell surface receptor binding
          	GO:0005488
GO:0046790	GO:0005488	AI	D	648528	virion binding
GO:0046810	GO:0005488	AI	D	648528	host cell extracellular matrix binding
GO:0046811	GO:0030234	AI	D	648528	histone deacetylase inhibitor
GO:0046812	GO:0005488	AI	D	648528	host cell surface binding
GO:0046817	GO:0004871	AI	D	648528	chemokine receptor antagonist
          	GO:0005102


New obsoletions in function ontology
GO:0001597, apelin-like receptor: the function it represents does not exist.


Term name changes in function ontology
GO:0000246: sterol C-24(28) reductase --> delta24(24-1) sterol reductase
GO:0004342: glucosamine-6-phosphate isomerase --> glucosamine-6-phosphate deaminase
GO:0008398: lanosterol 14-alpha-demethylase --> sterol 14-demethylase
GO:0008486: diphosphoinositol polyphosphate phosphohydrolase --> diphosphoinositol-polyphosphate diphosphatase
GO:0008549: dynamin GTPase --> dynamine GTPase
GO:0008942: nitrite reductase [NAD(P)H2] --> nitrite reductase [NAD(P)H]
GO:0008986: pyruvate,water dikinase --> water pyruvate dikinase
GO:0009905: copalyl diphosphate synthase --> ent-copalyl diphosphate synthase
GO:0016972: sulfhydryl oxidase --> thiol oxidase
GO:0030552: 3',5'-cyclic AMP binding --> 3',5'-cAMP binding
GO:0030553: 3',5'-cyclic GMP binding --> 3',5'-cGMP binding
GO:0045130: keratan sulfate Gal-6-sulfotransferase --> keratan sulfotransferase
GO:0045174: dehydroascorbate reductase --> glutathione dehydrogenase (ascorbate)
GO:0046556: alpha-N-arabinofuranosidase --> alpha-L-arabinofuranosidase


New definitions for function ontology terms (32 new definitions)
GO:0001597, apelin-like receptor
GO:0004003, ATP dependent DNA helicase
GO:0004004, ATP dependent RNA helicase
GO:0004133, glycogen debranching enzyme
GO:0004448, isocitrate dehydrogenase
GO:0004495, mevaldate reductase
GO:0004723, calcium-dependent protein serine/threonine phosphatase
GO:0004759, serine esterase
GO:0005384, manganese ion transporter
GO:0005385, zinc ion transporter
GO:0008026, ATP dependent helicase
GO:0008094, DNA dependent adenosinetriphosphatase
GO:0008186, RNA dependent adenosinetriphosphatase
GO:0008398, sterol 14-demethylase
GO:0008486, diphosphoinositol-polyphosphate diphosphatase
GO:0008708, glucose dehydrogenase
GO:0008875, gluconate dehydrogenase
GO:0015085, calcium ion transporter
GO:0015086, cadmium ion transporter
GO:0015087, cobalt ion transporter
GO:0015095, magnesium ion transporter
GO:0015595, spermidine porter
GO:0016033, iron ion transporter
GO:0016972, thiol oxidase
GO:0017136, NAD-dependent histone deacetylase
GO:0018447, chloral hydrate dehydrogenase
GO:0018497, 1-chloro-2,2-bis(4'-chlorophenyl)ethane dehydrogenase
GO:0018702, 1,1-dichloro-2,2-bis(4'-chlorophenyl)ethylene dehalogenase
GO:0018827, 1-chloro-2,2-bis(4'-chlorophenyl)ethane dehydrochlorinase
GO:0018829, 1,1-dichloro-2,2-bis(4'-chlorophenyl)ethane dehydrochlorinase
GO:0030357, protein phosphatase type 2B
GO:0042027, cyclophilin-type peptidy-prolyl cis-trans isomerase


New term merges in function ontology
GO:0003981 has been merged into GO:0015020, glucuronosyltransferase


Term movements in function ontology:
Terms movements under GO Slim term 'receptor ; GO:0004872'
- GO:0001597, apelin-like receptor

Terms movements under GO Slim term 'binding ; GO:0005488'
- GO:0001597, apelin-like receptor



New terms in process ontology (138 new terms)
GO:0000740	GO:0008151	SGD	D	641413	nuclear membrane fusion
GO:0000741	GO:0008151	SGD	D	641413	karyogamy
GO:0000742	GO:0000003	SGD	D	641413	karyogamy during conjugation with cellular fusion
          	GO:0007582
          	GO:0008151
GO:0000743	GO:0000003	SGD	D	641413	nuclear migration during conjugation with cellular fusion
          	GO:0007582
          	GO:0008151
GO:0000744	GO:0008151	SGD	D	641413	karyogamy during conjugation without cellular fusion
GO:0000745	GO:0008151	SGD	D	641413	nuclear exchange during conjugation without cellular fusion
GO:0000746	GO:0000003	SGD	D	641413	conjugation
          	GO:0007582
GO:0000747	GO:0000003	SGD	D	641413	conjugation with cellular fusion
          	GO:0007582
GO:0000748	GO:0000003	SGD	D	641413	conjugation without cellular fusion
          	GO:0007582
GO:0000749	GO:0000003	SGD	D	641413	response to pheromone during conjugation with cellular fusion
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000750	GO:0000003	SGD	D	641413	signal transduction during conjugation with cellular fusion
          	GO:0007165
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000751	GO:0000003	SGD	D	641413	cell cycle arrest in response to pheromone
          	GO:0007049
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000752	GO:0000003	SGD	D	641413	agglutination during conjugation with cellular fusion
          	GO:0007154
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000753	GO:0000003	SGD	D	641413	cellular morphogenesis during conjugation with cellular fusion
          	GO:0007275
          	GO:0007582
          	GO:0008151
          	GO:0009605
          	GO:0009628
GO:0000754	GO:0000003	SGD	D	641413	adaptation to pheromone during conjugation with cellular fusion
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000755	GO:0000003	SGD	D	641413	cytogamy
          	GO:0007582
          	GO:0008151
GO:0000756	GO:0000003	SGD	D	641413	response to pheromone during conjugation without cellular fusion
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000757	GO:0000003	SGD	D	641413	signal transduction during conjugation without cellular fusion
          	GO:0007165
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000758	GO:0000003	SGD	D	641413	agglutination during conjugation without cellular fusion
          	GO:0007154
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000759	GO:0000003	SGD	D	641413	cellular morphogenesis during conjugation without cellular fusion
          	GO:0007275
          	GO:0007582
          	GO:0008151
          	GO:0009605
          	GO:0009628
GO:0000760	GO:0000003	SGD	D	641413	adaptation to pheromone during conjugation without cellular fusion
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000761	GO:0000003	SGD	D	641413	conjugant formation
          	GO:0007582
GO:0000762	GO:0000003	SGD	D	641413	pheromone-induced unidirectional conjugation
          	GO:0007275
          	GO:0007582
GO:0000763	GO:0000003	SGD	D	641413	cellular morphogenesis during unidirectional conjugation
          	GO:0007275
          	GO:0007582
          	GO:0008151
GO:0000764	GO:0000003	SGD	D	641413	cellular morphogenesis during pheromone-induced unidirectional conjugation
          	GO:0007275
          	GO:0007582
          	GO:0008151
          	GO:0009605
          	GO:0009628
GO:0000765	GO:0000003	SGD	D	641413	response to pheromone during pheromone-induced unidirectional conjugation
          	GO:0007275
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000766	GO:0000003	SGD	D	641413	adaptation to pheromone during pheromone-induced unidirectional conjugation
          	GO:0007275
          	GO:0007582
          	GO:0009605
          	GO:0009628
GO:0000767	GO:0007275	SGD	D	641413	cellular morphogenesis during conjugation
          	GO:0008151
GO:0000768	GO:0008151	SGD	D	641413	syncytium formation by plasma membrane fusion
GO:0000769	GO:0008151	SGD	D	641413	syncytium formation by mitosis without cell division
GO:0000770	GO:0015031	SGD	D	641413	peptide pheromone export
GO:0000771	GO:0007154	SGD	D	641413	agglutination
GO:0009957	GO:0007275	TAIR	D	649271	epidermal cell fate specification
GO:0009958	GO:0009605	TAIR	D	649271	positive gravitropism
          	GO:0009628
GO:0009959	GO:0009605	TAIR	D	649271	negative gravitropism
          	GO:0009628
GO:0009960	GO:0007275	TAIR	D	649271	endosperm development
GO:0009961	GO:0009719	TAIR	D	649271	response to 1-aminocyclopropane-1-carboxylic acid
GO:0009962	GO:0006519	TAIR	D	649271	regulation of flavonoid biosynthesis
          	GO:0008152
          	GO:0009058
          	GO:0019748
GO:0009963	GO:0006519	TAIR	D	649271	positive regulation of flavonoid biosynthesis
          	GO:0008152
          	GO:0009058
          	GO:0019748
GO:0009964	GO:0006519	TAIR	D	649271	negative regulation of flavonoid biosynthesis
          	GO:0008152
          	GO:0009058
          	GO:0019748
GO:0009965	GO:0007275	TAIR	D	649271	leaf morphogenesis
GO:0009966	GO:0007165	TAIR	D	649271	regulation of signal transduction
GO:0009967	GO:0007165	TAIR	D	649271	positive regulation of signal transduction
GO:0009968	GO:0007165	TAIR	D	649271	negative regulation of signal transduction
GO:0009969	GO:0005975	TAIR	D	649271	xyloglucan biosynthesis
          	GO:0009058
GO:0009970	GO:0006950	TAIR	D	649271	response to sulfate starvation
          	GO:0009607
GO:0009971	GO:0007010	TAIR	D	649271	male meiotic spindle assembly (sensu Viridiplantae)
          	GO:0007049
GO:0009972	GO:0008152	TAIR	D	649271	cytidine deamination
          	GO:0009056
GO:0042572	GO:0008152	JL	D	      	retinol metabolism
GO:0042573	GO:0008152	JL	D	      	retinoic acid metabolism
GO:0042574	GO:0008152	JL	D	      	retinal metabolism
GO:0046718	GO:0016032	AI	D	648528	viral entry
GO:0046719	GO:0016032	AI	D	648528	regulation of viral protein levels
GO:0046720	GO:0007582	AI	D	598460	citric acid secretion
GO:0046721	GO:0007582	AI	D	598460	formic acid secretion
GO:0046722	GO:0007582	AI	D	598460	lactic acid secretion
GO:0046723	GO:0007582	AI	D	598460	malic acid secretion
GO:0046724	GO:0007582	AI	D	598460	oxalic acid secretion
GO:0046725	GO:0016032	AI	D	648528	negative regulation of viral protein levels
GO:0046726	GO:0016032	AI	D	648528	positive regulation of viral protein levels
GO:0046730	GO:0016032	AI	D	648528	viral induction of host immune response
          	GO:0030383
GO:0046731	GO:0016032	AI	D	648528	passive viral induction of host immune response
          	GO:0030383
GO:0046732	GO:0016032	AI	D	648528	active viral induction of host immune response
          	GO:0030383
GO:0046733	GO:0016032	AI	D	648528	passive viral induction of humoral immune response
          	GO:0030383
GO:0046734	GO:0016032	AI	D	648528	passive viral induction of cell-mediated immune response
          	GO:0030383
GO:0046735	GO:0016032	AI	D	648528	passive viral induction of innate immune response
          	GO:0030383
GO:0046736	GO:0016032	AI	D	648528	active viral induction of humoral immune response
          	GO:0030383
GO:0046737	GO:0016032	AI	D	648528	active viral induction of cell-mediated immune response
          	GO:0030383
GO:0046738	GO:0016032	AI	D	648528	active viral induction of innate immune response
          	GO:0030383
GO:0046739	GO:0016032	AI	D	648528	viral spread within host
GO:0046740	GO:0016032	AI	D	648528	viral spread within host, cell to cell
GO:0046741	GO:0016032	AI	D	648528	viral spread within host, tissue to tissue
GO:0046742	GO:0015031	AI	D	648528	nuclear viral capsid transport
          	GO:0016032
GO:0046743	GO:0006810	AI	D	648528	cytoplasmic viral capsid transport
          	GO:0015031
          	GO:0016032
GO:0046744	GO:0016032	AI	D	648528	viral capsid envelopment
GO:0046745	GO:0016032	AI	D	648528	viral capsid re-envelopment
GO:0046746	GO:0016032	AI	D	648528	nuclear membrane viral budding during viral capsid re-envelopment
GO:0046747	GO:0016032	AI	D	648528	Golgi membrane viral budding during viral capsid re-envelopment
GO:0046748	GO:0016032	AI	D	648528	ER membrane viral budding during viral capsid re-envelopment
GO:0046749	GO:0016032	AI	D	648528	nuclear membrane viral budding during viral capsid envelopment
GO:0046750	GO:0016032	AI	D	648528	Golgi membrane viral budding during viral capsid envelopment
GO:0046751	GO:0016032	AI	D	648528	ER membrane viral budding during viral capsid envelopment
GO:0046752	GO:0016032	AI	D	648528	nuclear localization of viral capsid precursors
          	GO:0019538
GO:0046753	GO:0016032	AI	D	648528	non-lytic viral release
GO:0046754	GO:0016032	AI	D	648528	non-lytic viral exocytosis
GO:0046755	GO:0016032	AI	D	648528	non-lytic viral budding
GO:0046756	GO:0016032	AI	D	648528	lytic viral exocytosis
GO:0046757	GO:0016032	AI	D	648528	lytic ER membrane viral budding
GO:0046758	GO:0016032	AI	D	648528	lytic Golgi membrane viral budding
GO:0046759	GO:0016032	AI	D	648528	lytic plasma membrane viral budding
GO:0046760	GO:0016032	AI	D	648528	non-lytic Golgi membrane viral budding
GO:0046761	GO:0016032	AI	D	648528	non-lytic plasma membrane viral budding
GO:0046762	GO:0016032	AI	D	648528	non-lytic ER membrane viral budding
GO:0046763	GO:0016032	AI	D	648528	Golgi membrane viral budding
GO:0046764	GO:0016032	AI	D	648528	ER membrane viral budding
GO:0046765	GO:0016032	AI	D	648528	nuclear membrane viral budding
GO:0046766	GO:0016032	AI	D	648528	plasma membrane viral budding
GO:0046767	GO:0016032	AI	D	648528	plasma membrane viral budding during viral capsid envelopment
GO:0046768	GO:0016032	AI	D	648528	plasma membrane viral budding during viral capsid re-envelopment
GO:0046769	GO:0016032	AI	D	648528	inner nuclear membrane viral budding during viral capsid re-envelopment
GO:0046770	GO:0016032	AI	D	648528	outer nuclear membrane viral budding during viral capsid re-envelopment
GO:0046771	GO:0016032	AI	D	648528	inner nuclear membrane viral budding during viral capsid envelopment
GO:0046772	GO:0016032	AI	D	648528	outer nuclear membrane viral budding during viral capsid envelopment
GO:0046773	GO:0016032	AI	D	648528	viral inhibition of host cell protein biosynthesis shutoff
          	GO:0030383
GO:0046774	GO:0016032	AI	D	648528	viral inhibition of intracellular interferon activity
          	GO:0030383
GO:0046775	GO:0016032	AI	D	648528	viral inhibition of host cytokine production
          	GO:0030383
GO:0046776	GO:0016032	AI	D	648528	viral inhibition of MHC class I cell surface presentation
          	GO:0030383
GO:0046777	GO:0006464	AI	D	648528	autophosphorylation
          	GO:0008152
GO:0046778	GO:0016032	AI	D	648528	viral perturbation of host mRNA processing
          	GO:0030383
GO:0046779	GO:0016032	AI	D	648528	viral inhibition of expression of host genes with introns
          	GO:0030383
GO:0046780	GO:0016032	AI	D	648528	viral inhibition of host mRNA splicing
          	GO:0030383
GO:0046781	GO:0016032	AI	D	648528	viral dispersion of host splicing factors
          	GO:0030383
GO:0046782	GO:0006350	AI	D	648528	regulation of viral transcription
          	GO:0016032
GO:0046783	GO:0006412	AI	D	648528	viral perturbation of polysomes
          	GO:0016032
          	GO:0030383
GO:0046784	GO:0006810	AI	D	648528	intronless viral mRNA-nucleus export
          	GO:0008152
GO:0046785	GO:0007010	AI	D	648528	microtubule polymerization
GO:0046786	GO:0016032	AI	D	648528	viral replication complex formation and maintenance
GO:0046787	GO:0006259	AI	D	648528	viral DNA repair
          	GO:0016032
GO:0046788	GO:0016032	AI	D	648528	viral egress
GO:0046791	GO:0016032	AI	D	648528	viral inhibition of host complement neutralization
          	GO:0030383
GO:0046792	GO:0007049	AI	D	648528	viral inhibition of cell cycle arrest
          	GO:0016032
          	GO:0030383
GO:0046793	GO:0016032	AI	D	648528	virus-induced modification of host RNA polymerase II
          	GO:0030383
GO:0046794	GO:0006810	AI	D	648528	virion transport
GO:0046795	GO:0006810	AI	D	648528	intracellular virion transport
GO:0046796	GO:0006810	AI	D	648528	viral genome transport
GO:0046797	GO:0016032	AI	D	648528	viral procapsid maturation
GO:0046799	GO:0006259	AI	D	648528	recruitment of helicase-primase complex to DNA lesions
          	GO:0016032
GO:0046800	GO:0016032	AI	D	648528	enhancement of virulence
GO:0046801	GO:0015031	AI	D	648528	intracellular viral capsid transport
          	GO:0016032
GO:0046802	GO:0006810	AI	D	648528	nuclear egress of viral procapsid
          	GO:0015031
          	GO:0016032
GO:0046803	GO:0016032	AI	D	648528	reduction of virulence
GO:0046804	GO:0006464	AI	D	648528	protein-protein cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide
GO:0046805	GO:0006464	AI	D	648528	protein-heme linkage via 1'-L-histidine
          	GO:0019538
GO:0046807	GO:0016032	AI	D	648528	viral scaffold assembly and maintenance
GO:0046813	GO:0016032	AI	D	648528	virion attachment, binding of host cell surface receptor
GO:0046814	GO:0016032	AI	D	648528	virion attachment, binding of host cell surface co-receptor
GO:0046815	GO:0016032	AI	D	648528	genome retention in viral capsid
GO:0046819	GO:0019538	AI	D	651122	type V protein secretion system


New obsoletions in process ontology
GO:0000174, inactivation of MAPK (mating sensu Saccharomyces): is a gene product specific term. 
GO:0000284, shmoo orientation: is an organisms specific term.  The entire branch of the ontology was reorganized to be more generally applicable.  Please consider the process node 'cellular morphogenesis during conjugation with cellular fusion; GO:0000753'.
GO:0006945, nuclear fusion during karyogamy: is redundany outside the context of Saccharomyces biology. 
GO:0007244, MAPKKK cascade (mating sensu Saccharomyces): is a gene product specific term. 
GO:0007245, activation of MAPKKK (mating sensu Saccharomyces): is a gene product specific term. 
GO:0007246, activation of MAPKK (mating sensu Saccharomyces): is a gene product specific term. 
GO:0007247, activation of MAPK (mating sensu Saccharomyces): is a gene product specific term. 
GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces): is a gene product specific term. 
GO:0007327, pheromone catabolism: is not a unique process. 
GO:0007335, karyogamy: this process is more common than its original location in the ontology and its definition would suggest.  A new term with the same term name was created at a more general location. 
GO:0030444, microtubule depolymerization during nuclear congression: the entire branch of the ontology was changed . 
GO:0030455, MAPKKK cascade (mating sensu Fungi): is a gene product specific term. 
GO:0030456, activation of MAPK (mating sensu Fungi): is a gene product specific term. 
GO:0030457, activation of MAPKK (mating sensu Fungi): is a gene product specific term. 
GO:0030458, activation of MAPKKK (mating sensu Fungi): is a gene product specific term. 
GO:0030459, inactivation of MAPK (mating sensu Fungi): is a gene product specific term. 
GO:0030460, nuclear translocation of MAPK (mating sensu Fungi): is a gene product specific term. 
GO:0046542, alpha-factor export: is a gene product based term and it does not involve a unique process.  Please consider the process node 'protein transport; GO:0015833'.
GO:0046614, pheromone catabolism (sensu Saccharomyces): is not a unique process. 
GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces): there is no evidence that this process is unique to Saccharomyces. 


Term name changes in process ontology
GO:0006405: nuclear RNA-nucleus export --> RNA-nucleus export
GO:0006621: ER retention --> protein-ER retention
GO:0007323: pheromone processing --> peptide pheromone maturation
GO:0009291: conjugation (sensu Bacteria) --> unidirectional conjugation
GO:0009292: genetic exchange --> genetic transfer
GO:0018182: protein-heme linkage via L-histidine --> protein-heme linkage via 3'-L-histidine
GO:0019067: viral assembly, maturation, and release --> viral assembly, maturation, egress, and release
GO:0019078: viral budding --> lytic viral budding
GO:0019236: pheromone response --> response to pheromone
GO:0045048: ER insertion --> protein-ER insertion
GO:0045053: Golgi retention --> protein-Golgi retention


New definitions for process ontology terms (16 new definitions)
GO:0000284, shmoo orientation
GO:0006948, viral-induced cell-cell fusion
GO:0007323, peptide pheromone maturation
GO:0009292, genetic transfer
GO:0009630, gravitropism
GO:0015628, type II protein (Sec) secretion system
GO:0016482, cytoplasmic transport
GO:0019589, glycerol fermentation to propane-1,3-diol
GO:0030444, microtubule depolymerization during nuclear congression
GO:0030456, activation of MAPK (mating sensu Fungi)
GO:0030457, activation of MAPKK (mating sensu Fungi)
GO:0030458, activation of MAPKKK (mating sensu Fungi)
GO:0030459, inactivation of MAPK (mating sensu Fungi)
GO:0030460, nuclear translocation of MAPK (mating sensu Fungi)
GO:0045026, plasma membrane fusion
GO:0046453, dipyrrin metabolism


New term merges in process ontology
GO:0000218 has been merged into GO:0000755, cytogamy
GO:0006946 has been merged into GO:0000743, nuclear migration during conjugation with cellular fusion
GO:0006947 has been merged into GO:0045026, plasma membrane fusion
GO:0007322 has been merged into GO:0000747, conjugation with cellular fusion
GO:0007324 has been merged into GO:0007323, peptide pheromone maturation
GO:0007325 has been merged into GO:0000770, peptide pheromone export
GO:0007326 has been merged into GO:0007323, peptide pheromone maturation
GO:0007328 has been merged into GO:0000749, response to pheromone during conjugation with cellular fusion
GO:0007330 has been merged into GO:0000750, signal transduction during conjugation with cellular fusion
GO:0007331 has been merged into GO:0000754, adaptation to pheromone during conjugation with cellular fusion
GO:0007332 has been merged into GO:0000753, cellular morphogenesis during conjugation with cellular fusion
GO:0007334 has been merged into GO:0000752, agglutination during conjugation with cellular fusion
GO:0030434 has been merged into GO:0000749, response to pheromone during conjugation with cellular fusion
GO:0030453 has been merged into GO:0000754, adaptation to pheromone during conjugation with cellular fusion
GO:0030454 has been merged into GO:0000750, signal transduction during conjugation with cellular fusion
GO:0030461 has been merged into GO:0000747, conjugation with cellular fusion
GO:0030462 has been merged into GO:0000755, cytogamy
GO:0030477 has been merged into GO:0000747, conjugation with cellular fusion
GO:0030571 has been merged into GO:0000751, cell cycle arrest in response to pheromone
GO:0046613 has been merged into GO:0007323, peptide pheromone maturation


Term movements in process ontology:
Terms movements under GO Slim term 'reproduction ; GO:0000003'
- GO:0000065, nuclear migration (sensu Saccharomyces)
- GO:0000174, inactivation of MAPK (mating sensu Saccharomyces)
- GO:0000284, shmoo orientation
+ GO:0000321, re-entry into mitotic cell cycle after pheromone arrest
- GO:0006945, nuclear fusion during karyogamy
- GO:0007244, MAPKKK cascade (mating sensu Saccharomyces)
- GO:0007245, activation of MAPKKK (mating sensu Saccharomyces)
- GO:0007246, activation of MAPKK (mating sensu Saccharomyces)
- GO:0007247, activation of MAPK (mating sensu Saccharomyces)
- GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces)
- GO:0007335, karyogamy
+ GO:0009291, unidirectional conjugation
- GO:0030444, microtubule depolymerization during nuclear congression
- GO:0046542, alpha-factor export
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
- GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces)

Terms movements under GO Slim term 'protein modification ; GO:0006464'
- GO:0007327, pheromone catabolism
- GO:0046542, alpha-factor export
- GO:0046614, pheromone catabolism (sensu Saccharomyces)

Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010'
- GO:0000284, shmoo orientation
- GO:0030444, microtubule depolymerization during nuclear congression

Terms movements under GO Slim term 'cell cycle ; GO:0007049'
- GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces)

Terms movements under GO Slim term 'signal transduction ; GO:0007165'
- GO:0000174, inactivation of MAPK (mating sensu Saccharomyces)
- GO:0007244, MAPKKK cascade (mating sensu Saccharomyces)
- GO:0007245, activation of MAPKKK (mating sensu Saccharomyces)
- GO:0007246, activation of MAPKK (mating sensu Saccharomyces)
- GO:0007247, activation of MAPK (mating sensu Saccharomyces)
- GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces)
- GO:0030455, MAPKKK cascade (mating sensu Fungi)
- GO:0030456, activation of MAPK (mating sensu Fungi)
- GO:0030457, activation of MAPKK (mating sensu Fungi)
- GO:0030458, activation of MAPKKK (mating sensu Fungi)
- GO:0030459, inactivation of MAPK (mating sensu Fungi)
- GO:0030460, nuclear translocation of MAPK (mating sensu Fungi)

Terms movements under GO Slim term 'physiological processes ; GO:0007582'
+ GO:0000321, re-entry into mitotic cell cycle after pheromone arrest
+ GO:0009291, unidirectional conjugation

Terms movements under GO Slim term 'cell growth and/or maintenance ; GO:0008151'
- GO:0000065, nuclear migration (sensu Saccharomyces)
- GO:0000174, inactivation of MAPK (mating sensu Saccharomyces)
- GO:0000284, shmoo orientation
- GO:0006945, nuclear fusion during karyogamy
- GO:0007244, MAPKKK cascade (mating sensu Saccharomyces)
- GO:0007245, activation of MAPKKK (mating sensu Saccharomyces)
- GO:0007246, activation of MAPKK (mating sensu Saccharomyces)
- GO:0007247, activation of MAPK (mating sensu Saccharomyces)
- GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces)
- GO:0007335, karyogamy
- GO:0007338, fertilization (sensu Animalia)
- GO:0007339, binding of sperm to zona pellucida
- GO:0007340, acrosome reaction
- GO:0007341, penetration of zona pellucida
- GO:0007343, egg activation
- GO:0009566, fertilization
- GO:0009567, double fertilization (sensu Magnoliophyta)
- GO:0009677, double fertilization (sensu Gnetophyta)
- GO:0018985, pronuclear envelope synthesis
- GO:0030444, microtubule depolymerization during nuclear congression
- GO:0045729, respiratory burst at fertilization
- GO:0046542, alpha-factor export
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
- GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces)

Terms movements under GO Slim term 'catabolism ; GO:0009056'
- GO:0007327, pheromone catabolism
- GO:0046614, pheromone catabolism (sensu Saccharomyces)

Terms movements under GO Slim term 'response to external stimulus ; GO:0009605'
- GO:0000174, inactivation of MAPK (mating sensu Saccharomyces)
+ GO:0000321, re-entry into mitotic cell cycle after pheromone arrest
- GO:0007244, MAPKKK cascade (mating sensu Saccharomyces)
- GO:0007245, activation of MAPKKK (mating sensu Saccharomyces)
- GO:0007246, activation of MAPKK (mating sensu Saccharomyces)
- GO:0007247, activation of MAPK (mating sensu Saccharomyces)
- GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces)
- GO:0007323, peptide pheromone maturation
- GO:0007327, pheromone catabolism
- GO:0046542, alpha-factor export
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
- GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces)

Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628'
- GO:0000174, inactivation of MAPK (mating sensu Saccharomyces)
+ GO:0000321, re-entry into mitotic cell cycle after pheromone arrest
- GO:0007244, MAPKKK cascade (mating sensu Saccharomyces)
- GO:0007245, activation of MAPKKK (mating sensu Saccharomyces)
- GO:0007246, activation of MAPKK (mating sensu Saccharomyces)
- GO:0007247, activation of MAPK (mating sensu Saccharomyces)
- GO:0007248, nuclear translocation of MAPK (mating sensu Saccharomyces)
- GO:0007323, peptide pheromone maturation
- GO:0007327, pheromone catabolism
- GO:0046542, alpha-factor export
- GO:0046614, pheromone catabolism (sensu Saccharomyces)
- GO:0046615, re-entry into mitotic cell cycle after pheromone arrest (sensu Saccharomyces)

Terms movements under GO Slim term 'protein transport ; GO:0015031'
+ GO:0015869, DNA-protein complex transport

Terms movements under GO Slim term 'protein metabolism ; GO:0019538'
- GO:0017003, protein-heme linkage
- GO:0018182, protein-heme linkage via 3'-L-histidine
- GO:0046614, pheromone catabolism (sensu Saccharomyces)



SourceForge items closed this month:

SF id	Resolution	SF item title	GO ids added, if any
598460	Works For Me	Children of Digestion	GO:0046720-46724
641413	None	Overhaul 'mating (sensu Fungi)' branch	GO:0000740-00772
647949	Fixed	Midori, Some Viral Term changes	GO:0046718-46719
648528	Accepted	Some new Viral GO Terms	GO:0046718-46719 GO:0046725-46818
649271	None	tair process terms	GO:0009957-09972
650815	Rejected	heme biosyn true path violation?	[none]
651122	Accepted	type V protein secretion system	GO:0046819
653178	Accepted	vesicle membrane terms	GO:0030658-30672
653183	Fixed	synaptic vesicle	[none]
653454	Accepted	add plasmalemma as as a synonym	[none]




Statistics:
Component: 1153 terms, 69.6% defined (803 terms defined)
Function: 5307 terms, 54.9% defined (2914 terms defined)
Process: 6879 terms, 78.8% defined (5418 terms defined)
Total: 13339 terms, 68.5% defined (9135 terms defined)


Term errors
none