GO Monthly Release Notes for February 2002
========================
Generated on Mon Oct 27 12:27:27 2003
Files used:
component old: 2.127 new: 2.141
function old: 2.196 new: 2.244
process old: 2.198 new: 2.261
definitions old: 2.226 new: 2.313
GO Slim: Generic.0208
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in component ontology (19 new terms)
GO:0000307 GO:0005622 SGD D cyclin-dependent protein kinase holoenzyme
GO:0000308 GO:0005622 SGD D cyclin-dependent protein kinase holoenzyme, cytoplasmic
GO:0005737
GO:0001669 GO:0005764 MGI D acrosome
GO:0012505 GO:0005623 TIGR D endomembrane system
GO:0012506 GO:0005623 TIGR D vesicle membrane
GO:0012507 GO:0005623 TIGR D ER-Golgi transport vesicle membrane
GO:0005794
GO:0016023
GO:0012508 GO:0005623 TIGR D Golgi-ER transport vesicle membrane
GO:0005794
GO:0016023
GO:0012509 GO:0005623 TIGR D inter-Golgi transport vesicle membrane
GO:0005794
GO:0016023
GO:0012510 GO:0005794 TIGR D trans-Golgi network transport vesicle membrane
GO:0016023
GO:0012511 GO:0005811 TIGR D lipid storage body (sensu Viridiplantae)
GO:0030529 GO:0005622 MAH D ribonucleoprotein
GO:0030530 GO:0005622 MAH D heterogeneous nuclear ribonucleoprotein
GO:0005634
GO:0030531 GO:0005622 MAH D small cytoplasmic ribonucleoprotein
GO:0005737
GO:0030532 GO:0005622 MAH D small nuclear ribonucleoprotein
GO:0005634
GO:0042025 GO:0005576 JL D host cell nucleus
GO:0042101 GO:0005886 JL D T-cell receptor complex
GO:0042105 GO:0005886 JL D alpha-beta T-cell receptor complex
GO:0042106 GO:0005886 JL D gamma-delta T-cell receptor complex
GO:0042151 GO:0005622 JL D 523951 cnidocyst
New obsoletions in component ontology
GO:0005733, small nucleolar RNA: represents a gene product.
GO:0005734, box C+D snoRNP protein: represents a gene product.
GO:0005735, box H+ACA snoRNP protein: represents a gene product.
Term name changes in component ontology
GO:0005732: small nucleolar ribonucleoprotein particle --> small nucleolar ribonucleoprotein
GO:0005842: cytosolic large ribosomal (60S) subunit --> 60S ribosomal subunit
GO:0005843: cytosolic small ribosomal (40S) subunit --> 40S ribosomal subunit
GO:0009282: prokaryotic large ribosomal (50S) subunit --> prokaryotic 50S ribosomal subunit
GO:0009283: prokaryotic small ribosomal (30S) subunit --> prokaryotic 30S ribosomal subunit
GO:0019030: isohedral viral capsid --> icosahedral viral capsid
GO:0019908: cyclin-dependent protein kinase holoenzyme --> cyclin-dependent protein kinase holoenzyme, nuclear
New definitions for component ontology terms (29 new definitions)
GO:0000144, septin ring (sensu Saccharomyces)
GO:0005719, euchromatin
GO:0005720, heterochromatin
GO:0005732, small nucleolar ribonucleoprotein
GO:0005733, small nucleolar RNA
GO:0005734, box C+D snoRNP protein
GO:0005735, box H+ACA snoRNP protein
GO:0005811, lipid particle
GO:0019012, virion
GO:0019014, viral nucleocapsid
GO:0019016, non-segmented viral genome
GO:0019017, segmented viral genome
GO:0019018, bipartite viral genome
GO:0019019, tripartite viral genome
GO:0019020, multipartite viral genome
GO:0019021, DNA viral genome
GO:0019022, RNA viral genome
GO:0019023, dsRNA viral genome
GO:0019024, ssRNA viral genome
GO:0019025, positive sense viral genome
GO:0019026, negative sense viral genome
GO:0019027, ambisense viral genome
GO:0019028, viral capsid
GO:0019034, viral replication complex
GO:0019035, viral integration complex
GO:0019036, viral transcriptional complex
GO:0019037, viral assembly intermediate
GO:0019038, provirus
GO:0019908, cyclin-dependent protein kinase holoenzyme, nuclear
Term movements in component ontology:
Terms movements under GO Slim term 'extracellular ; GO:0005576'
+ GO:0009505, cell wall (sensu Magnoliophyta)
Terms movements under GO Slim term 'intracellular ; GO:0005622'
+ GO:0005732, small nucleolar ribonucleoprotein
- GO:0009505, cell wall (sensu Magnoliophyta)
+ GO:0019908, cyclin-dependent protein kinase holoenzyme, nuclear
Terms movements under GO Slim term 'nucleolus ; GO:0005730'
- GO:0005733, small nucleolar RNA
- GO:0005734, box C+D snoRNP protein
- GO:0005735, box H+ACA snoRNP protein
New terms in function ontology (64 new terms)
GO:0001664 GO:0005102 MGI D G-protein coupled receptor ligand
GO:0001665 GO:0003824 MGI D alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase
GO:0001668 GO:0003824 MGI D phosphatidylinositol-4,5-bisphosphate 5-phosphatase
GO:0004786 obs OS D Mn, Fe superoxide dismutase
GO:0009881 GO:0004872 TAIR D photoreceptor
GO:0009882 GO:0004872 TAIR D blue light photoreceptor
GO:0009883 GO:0004872 TAIR D red/far-red light photoreceptor
GO:0009884 GO:0004872 TAIR D cytokinin receptor
GO:0009885 GO:0004872 TAIR D transmembrane histidine kinase cytokinin receptor
GO:0030527 GO:0005198 MAH D structural constituent of chromatin
GO:0030533 GO:0030533 MAH D triplet codon-amino acid adaptor
GO:0030544 GO:0005515 MAH D HSP70 protein binding
GO:0030545 GO:0004871 MAH D receptor regulator
GO:0030546 GO:0004871 MAH D receptor activator
GO:0030547 GO:0004871 MAH D receptor inhibitor
GO:0030548 GO:0004871 MAH D acetylcholine receptor regulator
GO:0030549 GO:0004871 MAH D acetylcholine receptor activator
GO:0030550 GO:0004871 MAH D acetylcholine receptor inhibitor
GO:0030551 GO:0000166 MAH D cyclic nucleotide binding
GO:0030552 GO:0000166 MAH D 3',5'-cyclic AMP binding
GO:0030553 GO:0000166 MAH D 3',5'-cyclic GMP binding
GO:0030554 GO:0000166 MAH D adenyl nucleotide binding
GO:0030555 GO:0003723 MAH D RNA modification guide
GO:0030556 GO:0003723 MAH D rRNA modification guide
GO:0030557 GO:0003723 MAH D tRNA modification guide
GO:0030558 GO:0003723 MAH D RNA pseudouridylation guide
GO:0030559 GO:0003723 MAH D rRNA pseudouridylation guide
GO:0030560 GO:0003723 MAH D tRNA pseudouridylation guide
GO:0030561 GO:0003723 MAH D RNA 2'-O-ribose methylation guide
GO:0030562 GO:0003723 MAH D rRNA 2'-O-ribose methylation guide
GO:0030563 GO:0003723 MAH D snRNA 2'-O-ribose methylation guide
GO:0030564 GO:0003723 MAH D tRNA 2'-O-ribose methylation guide
GO:0030565 GO:0003723 MAH D snRNA pseudouridylation guide
GO:0030566 GO:0003723 MAH D snRNA modification guide
GO:0030567 GO:0030234 MAH D prothrombin activator
GO:0030568 GO:0030234 MAH D plasmin inhibitor
GO:0030569 GO:0030234 MAH D chymotrypsin inhibitor
GO:0042027 GO:0003824 JL D cyclophilin-type peptidyprolyl cis-trans isomerase
GO:0042028 GO:0003824 JL D juglone-sensitive peptidylprolyl cis-trans isomerase
GO:0042029 GO:0008233 JL D fibrolase
GO:0042030 GO:0030234 JL D ATPase inhibitor
GO:0042031 GO:0030234 JL D angiotensin-converting enzyme inhibitor
GO:0042043 GO:0005515 JL D neurexin binding
GO:0042054 GO:0003824 JL D histone methyltransferase
GO:0042056 GO:0005488 JL D chemoattractant
GO:0042057 GO:0004871 JL D transforming growth factor-beta receptor anchor
GO:0042064 GO:0005194 JL D cell adhesion receptor regulator
GO:0042071 GO:0003793 JL D leucokinin receptor
GO:0004872
GO:0005515
GO:0042072 GO:0005194 JL D cell adhesion receptor inhibitor
GO:0042083 GO:0003824 JL D 5,10-methylenetetrahydrofolate-dependent methyltransferase
GO:0042084 GO:0003824 JL D 5-methyltetrahydrofolate
GO:0042085 GO:0003824 JL D 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase
GO:0042086 GO:0003824 JL D 5-methyl-5,6,7,8-tetrahydromethanopterin-dependent methyltransferase
GO:0042096 GO:0004872 JL D alpha-beta T-cell receptor
GO:0042099 GO:0004872 JL D gamma-delta T-cell receptor
GO:0042123 GO:0003824 JL D 516053 glucanosyltransferase
GO:0042124 GO:0003824 JL D 516114 1,3-beta-glucanosyltransferase
GO:0042131 GO:0003824 JL D 516118 thiamine phosphate phosphatase
GO:0042132 GO:0003824 JL D 516124 fructose-1,6-bisphosphatase
GO:0042134 GO:0003723 JL D 516129 rRNA primary transcript binding
GO:0042141 GO:0000166 JL D 516137 mating pheromone exporter
GO:0003824
GO:0005215
GO:0042143 GO:0003824 JL D 516140 phytochelatin synthase
GO:0042153 GO:0005515 JL D 514798 RPTP-like protein binding
GO:0042156 GO:0003700 JL D zinc-mediated transcriptional activator
New obsoletions in function ontology
GO:0003733, ribonucleoprotein: describes a cellular component rather than a molecular function.
GO:0003734, small nuclear ribonucleoprotein: describes a cellular component rather than a molecular function.
GO:0003750, cell cycle regulator: does not represent a single molecular function.
GO:0004600, cyclophilin: No reason given.
GO:0005563, transfer RNA: represents a gene product. Use the function term "triplet codon-amino acid adaptor ; GO:0030533."
GO:0005566, ribosomal RNA: represents gene products.
GO:0005569, small nucleolar RNA: represents gene products.
GO:0008436, heterogeneous nuclear ribonucleoprotein: describes a cellular component rather than a molecular function.
GO:0009388, antisense RNA: represents a gene product.
GO:0030052, parvulin: No reason given.
GO:0030053, immunophilin: No reason given.
GO:0030355, small nucleolar ribonucleoprotein: describes a cellular component rather than a molecular function.
GO:0030356, small cytoplasmic ribonucleoprotein: describes a cellular component rather than a molecular function.
Term name changes in function ontology
GO:0001647: cytokinin receptor --> G-protein coupled cytokinin receptor
GO:0003735: structural protein of ribosome --> structural constituent of ribosome
GO:0003755: peptidyl-prolyl isomerase --> peptidylprolyl cis-trans isomerase
GO:0004866: proteinase inhibitor --> endopeptidase inhibitor
GO:0004892: B cell receptor --> B-cell receptor
GO:0004894: T cell receptor --> T-cell receptor
GO:0005077: MAP-kinase anchoring protein --> MAP-kinase anchor protein
GO:0005079: protein kinase A anchoring protein --> protein kinase A anchor protein
GO:0005198: structural protein --> structural molecule
GO:0005199: cell wall structural protein --> structural constituent of cell wall
GO:0005200: structural protein of cytoskeleton --> structural constituent of cytoskeleton
GO:0005201: extracellular matrix structural protein --> extracellular matrix structural constituent
GO:0005212: structural protein of eye lens --> structural constituent of eye lens
GO:0005213: structural protein of chorion (sensu Insecta) --> structural constituent of chorion (sensu Insecta)
GO:0005214: structural protein of cuticle (sensu Insecta) --> structural constituent of cuticle (sensu Insecta)
GO:0008010: structural protein of larval cuticle (sensu Insecta) --> structural constituent of larval cuticle (sensu Insecta)
GO:0008011: structural protein of pupal cuticle (sensu Insecta) --> structural constituent of pupal cuticle (sensu Insecta)
GO:0008012: structural protein of adult cuticle (sensu Insecta) --> structural constituent of adult cuticle (sensu Insecta)
GO:0008020: photoreceptor --> G-protein coupled photoreceptor
GO:0008147: structural protein of bone --> structural constituent of bone
GO:0008265: molybdopterin cofactor sulfurase --> Mo-molybdopterin cofactor sulfurase
GO:0008307: structural protein of muscle --> structural constituent of muscle
GO:0008316: structural protein of vitelline membrane (sensu Insecta) --> structural constituent of vitelline membrane (sensu Insecta)
GO:0016164: molybdopterin oxidoreductase --> Mo-molybdopterin oxidoreductase
GO:0016490: structural protein of peritrophic membrane (sensu Insecta) --> structural constituent of peritrophic membrane (sensu Insecta)
GO:0016500: hormone protein receptor --> protein-hormone receptor
GO:0016859: cis-trans-isomerase --> cis-trans isomerase
GO:0017056: structural protein of nuclear pore --> structural constituent of nuclear pore
GO:0017114: wide-spectrum proteinase inhibitor --> wide-spectrum protease inhibitor
GO:0019911: structural protein of myelin sheath --> structural constituent of myelin sheath
GO:0030020: extracellular matrix structural protein conferring tensile strength --> extracellular matrix structural constituent conferring tensile strength
GO:0030021: extracellular matrix structural protein conferring compression resistance --> extracellular matrix structural constituent conferring compression resistance
GO:0030022: extracellular matrix protein, adhesive --> extracellular matrix constituent, adhesive
GO:0030023: extracellular matrix protein conferring elasticity --> extracellular matrix constituent conferring elasticity
GO:0030051: FK506-binding isomerase --> FK506-sensitive peptidylprolyl cis-trans isomerase
GO:0030197: extracellular matrix protein, lubricant --> extracellular matrix constituent, lubricant
GO:0030280: structural protein of epidermis --> structural constituent of epidermis
GO:0030281: structural protein of cutaneous appendage --> structural constituent of cutaneous appendage
GO:0030345: structural protein of tooth enamel --> structural constituent of tooth enamel
GO:0030366: molybdopterin synthase --> Mo-molybdopterin synthase
GO:0030372: high molecular weight B cell growth factor receptor ligand --> high molecular weight B-cell growth factor receptor ligand
GO:0030373: high molecular weight B cell growth factor receptor --> high molecular weight B-cell growth factor receptor
New definitions for function ontology terms (67 new definitions)
GO:0001584, rhodopsin-like receptor
GO:0001599, endothelin-A receptor
GO:0001600, endothelin-B receptor
GO:0001601, peptide YY receptor
GO:0001602, pancreatic polypeptide receptor
GO:0001608, nucleotide receptor, G-protein coupled
GO:0001618, viral receptor
GO:0001619, lysosphingolipid and lysophosphatidic acid receptor
GO:0001620, class A orphan receptor
GO:0001633, secretin-like receptor
GO:0001639, PLC activating metabotropic glutamate receptor
GO:0001640, adenylate cyclase inhibiting metabotropic glutamate receptor
GO:0001641, group II metabotropic glutamate receptor
GO:0001642, group III metabotropic glutamate receptor
GO:0001645, class C orphan receptor
GO:0001647, G-protein coupled cytokinin receptor
GO:0003733, ribonucleoprotein
GO:0003734, small nuclear ribonucleoprotein
GO:0003735, structural constituent of ribosome
GO:0003750, cell cycle regulator
GO:0004866, endopeptidase inhibitor
GO:0004895, cell adhesion receptor
GO:0004901, granulocyte-macrophage colony stimulating factor receptor
GO:0004930, G-protein coupled receptor
GO:0004932, mating-type factor pheromone receptor
GO:0004949, cannaboid receptor
GO:0004950, chemokine receptor
GO:0004953, eicosanoid receptor
GO:0004962, endothelin receptor
GO:0004965, GABA-B receptor
GO:0004983, neuropeptide Y receptor
GO:0004984, olfactory receptor
GO:0005179, hormone
GO:0005194, cell adhesion molecule
GO:0005198, structural molecule
GO:0005199, structural constituent of cell wall
GO:0005200, structural constituent of cytoskeleton
GO:0005212, structural constituent of eye lens
GO:0005213, structural constituent of chorion (sensu Insecta)
GO:0005214, structural constituent of cuticle (sensu Insecta)
GO:0005563, transfer RNA
GO:0005566, ribosomal RNA
GO:0005569, small nucleolar RNA
GO:0008010, structural constituent of larval cuticle (sensu Insecta)
GO:0008011, structural constituent of pupal cuticle (sensu Insecta)
GO:0008012, structural constituent of adult cuticle (sensu Insecta)
GO:0008067, metabotropic glutamate, GABA-B-like receptor
GO:0008147, structural constituent of bone
GO:0008227, amine receptor
GO:0008233, peptidase
GO:0008307, structural constituent of muscle
GO:0008316, structural constituent of vitelline membrane (sensu Insecta)
GO:0008436, heterogeneous nuclear ribonucleoprotein
GO:0008527, taste receptor
GO:0009388, antisense RNA
GO:0016493, C-C chemokine receptor
GO:0016494, C-X-C chemokine receptor
GO:0016495, C-X3-C chemokine receptor
GO:0016526, G-protein coupled receptor, unknown ligand
GO:0016563, transcriptional activator
GO:0016887, ATPase
GO:0017056, structural constituent of nuclear pore
GO:0019911, structural constituent of myelin sheath
GO:0030345, structural constituent of tooth enamel
GO:0030355, small nucleolar ribonucleoprotein
GO:0030356, small cytoplasmic ribonucleoprotein
GO:0030414, protease inhibitor
New term merges in function ontology
GO:0003751 has been merged into GO:0016538, cyclin-dependent protein kinase, regulator
GO:0003752 has been merged into GO:0016538, cyclin-dependent protein kinase, regulator
GO:0003753 has been merged into GO:0016538, cyclin-dependent protein kinase, regulator
GO:0004330 has been merged into GO:0004331, fructose-2,6-bisphosphatase
GO:0030525 has been merged into GO:0004901, granulocyte-macrophage colony stimulating factor receptor
Term movements in function ontology:
Terms movements under GO Slim term 'nucleic acid binding ; GO:0003676'
- GO:0003733, ribonucleoprotein
- GO:0003734, small nuclear ribonucleoprotein
- GO:0008436, heterogeneous nuclear ribonucleoprotein
- GO:0030355, small nucleolar ribonucleoprotein
- GO:0030356, small cytoplasmic ribonucleoprotein
Terms movements under GO Slim term 'transcription factor ; GO:0003700'
- GO:0005563, transfer RNA
Terms movements under GO Slim term 'chaperone ; GO:0003754'
- GO:0003755, peptidylprolyl cis-trans isomerase
- GO:0004600, cyclophilin
- GO:0030051, FK506-sensitive peptidylprolyl cis-trans isomerase
- GO:0030052, parvulin
- GO:0030053, immunophilin
Terms movements under GO Slim term 'enzyme ; GO:0003824'
- GO:0004600, cyclophilin
- GO:0030052, parvulin
- GO:0030053, immunophilin
Terms movements under GO Slim term 'protein kinase ; GO:0004672'
+ GO:0004901, granulocyte-macrophage colony stimulating factor receptor
Terms movements under GO Slim term 'signal transducer ; GO:0004871'
- GO:0005569, small nucleolar RNA
- GO:0016964, alpha-2 macroglobulin receptor
Terms movements under GO Slim term 'receptor ; GO:0004872'
+ GO:0016964, alpha-2 macroglobulin receptor
Terms movements under GO Slim term 'cell adhesion molecule ; GO:0005194'
- GO:0003750, cell cycle regulator
Terms movements under GO Slim term 'protein tagging ; GO:0008638'
- GO:0005566, ribosomal RNA
Terms movements under GO Slim term 'antioxidant ; GO:0016209'
- GO:0009388, antisense RNA
Terms movements under GO Slim term 'enzyme regulator ; GO:0030234'
+ GO:0003804, blood coagulation factor X
New terms in process ontology (123 new terms)
GO:0001655 GO:0007275 MGI D urogenital system development
GO:0001656 GO:0007275 MGI D metanephros development
GO:0001657 GO:0007275 MGI D ureteric bud development
GO:0001658 GO:0007275 MGI D ureteric bud branching
GO:0001659 GO:0007582 MGI D thermoregulation
GO:0001660 GO:0006950 MGI D fever
GO:0007582
GO:0009607
GO:0001661 GO:0007610 MGI D taste aversion
GO:0001662 GO:0007610 MGI D behavioral fear response
GO:0001663 GO:0007582 MGI D physiological fear response
GO:0001666 GO:0006950 MGI D response to hypoxia
GO:0001667 GO:0008151 MGI D ameboid cell migration
GO:0006815 obs OS D sodium/potassium transport
GO:0012501 GO:0008219 TIGR D programmed cell death
GO:0012502 GO:0008219 TIGR D induction of programmed cell death
GO:0012503 GO:0008219 TIGR D induction of non-apoptotic programmed cell death
GO:0012504 GO:0006950 TIGR D induction of non-apoptotic programmed cell death by pathogen
GO:0009607
GO:0030534 GO:0007610 MAH D adult behavior
GO:0030535 GO:0007610 MAH D adult feeding behavior (sensu Insecta)
GO:0030536 GO:0007610 MAH D larval feeding behavior
GO:0030537 GO:0007610 MAH D larval behavior
GO:0030538 GO:0007275 MAH D genital morphogenesis
GO:0030539 GO:0007275 MAH D male genital morphogenesis
GO:0030540 GO:0007275 MAH D female genital morphogenesis
GO:0030541 GO:0007049 MAH D plasmid partitioning
GO:0030542 GO:0007049 MAH D plasmid partitioning (sensu Bacteria)
GO:0030543 GO:0007049 MAH D 2-micron plasmid partitioning
GO:0042023 GO:0006259 JL D DNA endoreduplication
GO:0007049
GO:0042024 GO:0006259 JL D DNA endoreduplication initiation
GO:0007049
GO:0042026 GO:0008152 JL D protein refolding
GO:0042033 GO:0009058 JL D chemokine biosynthesis
GO:0009607
GO:0042034 GO:0006464 JL D peptidyl-lysine esterfication
GO:0042035 GO:0009058 JL D regulation of cytokine biosynthesis
GO:0009607
GO:0042036 GO:0009058 JL D inhibition of cytokine biosynthesis
GO:0009607
GO:0042037 GO:0006464 JL D peptidyl-histidine methylation, to form pros-methylhistidine
GO:0042038 GO:0006464 JL D peptidyl-histidine methylation, to form tele-methylhistidine
GO:0042039 GO:0006464 JL D vanadium incorporation into metallo-sulfur cluster
GO:0042040 GO:0006464 JL D metal-incorporation into metallo-pterin complex
GO:0042041 GO:0006464 JL D molybdenum incorporation into metallo-pterin complex
GO:0042042 GO:0006464 JL D tungsten incorporation into metallo-pterin complex
GO:0042044 GO:0006810 JL D fluid transport
GO:0042045 GO:0006810 JL D epithelial fluid transport
GO:0042046 GO:0006731 JL D W-molybdopterin cofactor metabolism
GO:0042047 GO:0006731 JL D W-molybdopterin cofactor biosynthesis
GO:0042048 GO:0007610 JL D olfactory behavior
GO:0042049 GO:0006629 JL D acyl-CoA homeostasis
GO:0019725
GO:0042050 GO:0006464 JL D protein amino acid lipidation
GO:0042051 GO:0007275 JL D photoreceptor development
GO:0042052 GO:0007275 JL D rhabdomere development
GO:0042053 GO:0006519 JL D regulation of dopamine concentration
GO:0042055 GO:0007275 JL D neuronal lineage restriction
GO:0042058 GO:0007165 JL D regulation of EGF receptor signaling pathway
GO:0042059 GO:0007165 JL D negative regulation of EGF receptor signaling pathway
GO:0042060 GO:0006950 JL D wound healing
GO:0009607
GO:0042061 GO:0007049 JL D entry into meiosis
GO:0042062 GO:0007275 JL D long-term strengthening of neuromuscular junction
GO:0042063 GO:0007275 JL D gliogenesis
GO:0042065 GO:0007275 JL D glial growth
GO:0042066 GO:0007275 JL D perineurial glial growth
GO:0042067 GO:0007010 JL D establishment of ommatidial polarity
GO:0007275
GO:0042068 GO:0008152 JL D regulation of pteridine metabolism
GO:0042069 GO:0006519 JL D regulation of catecholamine metabolism
GO:0042070 GO:0000003 JL D oocyte nucleus anchoring
GO:0042073 GO:0016043 JL D intraflagellar transport
GO:0042074 GO:0007275 JL D cell migration during gastrulation
GO:0008151
GO:0042075 GO:0006464 JL D nickel incorporation into nickel-iron-sulfur cluster via pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
GO:0042076 GO:0006464 JL D phosphate-linked glycosylation
GO:0009058
GO:0019538
GO:0042077 GO:0006464 JL D phosphate-linked glycosylation via serine
GO:0009058
GO:0019538
GO:0042078 GO:0007049 JL D germ-line stem cell renewal
GO:0042079 GO:0006464 JL D GPI/GSI anchor metabolism
GO:0042080 GO:0006464 JL D GPI/GSI anchor synthesis
GO:0042081 GO:0006464 JL D GSI anchor metabolism
GO:0042082 GO:0006464 JL D GSI anchor synthesis
GO:0042087 GO:0006950 JL D cell-mediated immune response
GO:0009607
GO:0042088 GO:0006950 JL D T-helper 1 type immune response
GO:0009607
GO:0042089 GO:0009058 JL D cytokine biosynthesis
GO:0009607
GO:0042090 GO:0006950 JL D interleukin-12 biosynthesis
GO:0009058
GO:0009607
GO:0042091 GO:0006950 JL D interleukin-10 biosynthesis
GO:0009058
GO:0009607
GO:0042092 GO:0006950 JL D T-helper 2 type immune response
GO:0009607
GO:0042093 GO:0007275 JL D T-helper cell differentiation
GO:0009607
GO:0030154
GO:0042094 GO:0006950 JL D interleukin-2 biosynthesis
GO:0009058
GO:0009607
GO:0042095 GO:0006950 JL D interferon-gamma biosynthesis
GO:0009058
GO:0009607
GO:0042097 GO:0006950 JL D interleukin-4 biosynthesis
GO:0009607
GO:0042098 GO:0008283 JL D T-cell proliferation
GO:0009607
GO:0042100 GO:0008283 JL D B-cell proliferation
GO:0009607
GO:0042102 GO:0008283 JL D positive control of T-cell proliferation
GO:0009607
GO:0042103 GO:0008283 JL D positive control of resting T-cell proliferation
GO:0009607
GO:0042104 GO:0008283 JL D positive control of activated T-cell proliferation
GO:0009607
GO:0042107 GO:0009607 JL D cytokine metabolism
GO:0042108 GO:0009058 JL D activation of cytokine biosynthesis
GO:0009607
GO:0042109 GO:0006950 JL D tumor necrosis factor-beta biosynthesis
GO:0009607
GO:0042110 GO:0009607 JL D T-cell activation
GO:0042113 GO:0009607 JL D B-cell activation
GO:0042116 GO:0009607 JL D macrophage activation
GO:0042117 GO:0009607 JL D monocyte activation
GO:0042118 GO:0009607 JL D endothelial cell activation
GO:0042119 GO:0009607 JL D neutrophil activation
GO:0042120 GO:0005975 JL D alginic acid metabolism
GO:0042121 GO:0005975 JL D alginic acid biosynthesis
GO:0042122 GO:0005975 JL D alginic acid catabolism
GO:0042125 GO:0006464 JL D 516117 protein amino acid galactosylation
GO:0042126 GO:0008152 JL D nitrate metabolism
GO:0042127 GO:0008283 JL D regulation of cell proliferation
GO:0042128 GO:0008152 JL D 531543 nitrate assimilation
GO:0042129 GO:0008283 JL D regulation of T-cell proliferation
GO:0009607
GO:0042130 GO:0008283 JL D negative control of T-cell proliferation
GO:0009607
GO:0042133 GO:0007267 JL D neurotransmitter metabolism
GO:0008152
GO:0042135 GO:0007267 JL D neurotransmitter catabolism
GO:0008152
GO:0009056
GO:0042136 GO:0007267 JL D neurotransmitter biosynthesis
GO:0008152
GO:0009058
GO:0042137 GO:0007267 JL D neurotransmitter storage
GO:0008152
GO:0042138 GO:0006259 JL D 531585 meiotic DNA double-strand break formation
GO:0007049
GO:0042139 GO:0006259 JL D early recombination nodule assembly
GO:0007049
GO:0042140 GO:0006259 JL D late recombination nodule assembly
GO:0007049
GO:0042142 GO:0006950 JL D 516138 heavy metal chelation
GO:0009628
GO:0042144 GO:0006996 JL D 516142 vacuole fusion (non-autophagic)
GO:0042145 GO:0006996 JL D 516142 homotypic vacuole fusion (non-autophagic)
GO:0042146 GO:0006996 JL D 516142 heterotypic vacuole fusion (non-autophagic)
GO:0042147 GO:0006996 JL D 516144 retrograde (endosome to Golgi) transport
GO:0015031
GO:0042148 GO:0006259 JL D 516147 D-loop formation
GO:0042149 GO:0006950 JL D 516149 glucose starvation response
GO:0009607
GO:0042150 GO:0006259 JL D 516151 plasmid recombination
GO:0042152 GO:0006259 JL D 516153 RNA-mediated DNA recombination
GO:0042154 GO:0006950 JL D 523544 attenuation of antimicrobial humoral response (sensu Invertebrata)
GO:0009607
GO:0042155 GO:0006950 JL D 523544 attenuation of antimicrobial humoral response (sensu Vertebrata)
GO:0009607
New obsoletions in process ontology
GO:0006460, peptidylprolyl isomerase B reaction: No reason given.
GO:0007583, killer activity: No reason given.
GO:0009406, virulence: No reason given.
Term name changes in process ontology
GO:0006777: molybdopterin cofactor biosynthesis --> Mo-molybdopterin cofactor biosynthesis
GO:0006924: peripheral killing of activated T cells --> peripheral killing of activated T-cells
GO:0006959: humoral defense mechanism --> humoral immune response
GO:0007229: integrin receptor signal signaling pathway --> integrin-mediated signaling pathway
GO:0007334: agglutination --> agglutination (sensu Saccharomyces)
GO:0007444: imaginal discs development --> imaginal disc development
GO:0007484: genital morphogenesis --> genital morphogenesis (sensu Insecta)
GO:0007485: male genital morphogenesis --> male genital morphogenesis (sensu Insecta)
GO:0007486: female genital morphogenesis --> female genital morphogenesis (sensu Insecta)
GO:0007487: analia morphogenesis --> analia morphogenesis (sensu Insecta)
GO:0008341: response to cocaine --> response to cocaine (sensu Insecta)
GO:0008342: larval feeding behavior --> larval feeding behavior (sensu Insecta)
GO:0016244: non-apoptotic cell death --> non-apoptotic programmed cell death
GO:0018281: GPI anchor synthesis via N-seryl-glycosylsphingolipidinositolethanolamine --> GSI anchor synthesis via N-seryl-glycosylsphingolipidinositolethanolamine
GO:0018283: iron incorporation into iron-sulfur cluster --> iron incorporation into metallo-sulfur cluster
GO:0019720: molybdopterin cofactor metabolism --> Mo-molybdopterin cofactor metabolism
GO:0030183: B cell differentiation --> B-cell differentiation
GO:0030217: T cell differentiation --> T-cell differentiation
GO:0040036: regulation of FGF receptor signalling pathway --> regulation of FGF receptor signaling pathway
GO:0040037: negative regulation of FGF receptor signalling pathway --> negative regulation of FGF receptor signaling pathway
New definitions for process ontology terms (25 new definitions)
GO:0000065, nuclear migration (sensu Saccharomyces)
GO:0000071, mitotic spindle assembly (sensu Saccharomyces)
GO:0000073, spindle pole body separation (sensu Saccharomyces)
GO:0006458, `de novo` protein folding
GO:0006895, Golgi to endosome transport
GO:0006995, nitrogen starvation response
GO:0007146, recombination nodule assembly
GO:0007152, spore wall assembly (sensu Saccharomyces)
GO:0007153, germination (sensu Saccharomyces)
GO:0007328, pheromone response (sensu Saccharomyces)
GO:0007330, signal transduction of mating signal (sensu Saccharomyces)
GO:0007331, adaptation to mating signal (sensu Saccharomyces)
GO:0007574, cell aging (sensu Saccharomyces)
GO:0007577, autophagic death (sensu Saccharomyces)
GO:0007578, aging dependent sterility (sensu Saccharomyces)
GO:0007631, feeding behavior
GO:0008342, larval feeding behavior (sensu Insecta)
GO:0008343, adult feeding behavior
GO:0009267, starvation response
GO:0009405, pathogenesis
GO:0009616, virus induced gene silencing
GO:0015968, stringent response
GO:0016036, phosphate starvation response
GO:0016440, transcriptional gene silencing
GO:0018282, metal incorporation into metallo-sulfur cluster
New term merges in process ontology
GO:0019723 has been merged into GO:0042087, cell-mediated immune response
Term movements in process ontology:
Terms movements under GO Slim term 'carbohydrate metabolism ; GO:0005975'
+ GO:0006071, glycerol metabolism
+ GO:0006072, glycerol-3-phosphate metabolism
+ GO:0006094, gluconeogenesis
+ GO:0006114, glycerol biosynthesis
+ GO:0019563, glycerol catabolism
+ GO:0019564, aerobic glycerol catabolism
+ GO:0019565, aerobic glycerol fermentation
+ GO:0019588, glycerol fermentation
+ GO:0019589, glycerol fermentation to propane-1,3-diol
Terms movements under GO Slim term 'energy pathways ; GO:0006091'
+ GO:0006071, glycerol metabolism
+ GO:0006072, glycerol-3-phosphate metabolism
+ GO:0019563, glycerol catabolism
+ GO:0019564, aerobic glycerol catabolism
Terms movements under GO Slim term 'DNA metabolism ; GO:0006259'
- GO:0006276, plasmid maintenance
Terms movements under GO Slim term 'transcription ; GO:0006350'
+ GO:0000183, chromatin silencing at ribosomal DNA (rDNA)
+ GO:0006342, chromatin silencing
+ GO:0006343, establishment of chromatin silencing
+ GO:0006344, maintenance of chromatin silencing
+ GO:0006345, loss of chromatin silencing
+ GO:0006346, methylation-dependent chromatin silencing
+ GO:0006347, chromatin silencing at HML and HMR (sensu Saccharomyces)
+ GO:0006348, chromatin silencing at telomere
+ GO:0016440, transcriptional gene silencing
+ GO:0030466, chromatin silencing at silent mating type cassettes (sensu Fungi)
Terms movements under GO Slim term 'lipid metabolism ; GO:0006629'
+ GO:0006071, glycerol metabolism
+ GO:0006072, glycerol-3-phosphate metabolism
+ GO:0006114, glycerol biosynthesis
+ GO:0019563, glycerol catabolism
+ GO:0019564, aerobic glycerol catabolism
Terms movements under GO Slim term 'stress response ; GO:0006950'
- GO:0000183, chromatin silencing at ribosomal DNA (rDNA)
- GO:0006342, chromatin silencing
- GO:0006343, establishment of chromatin silencing
- GO:0006344, maintenance of chromatin silencing
- GO:0006345, loss of chromatin silencing
- GO:0006346, methylation-dependent chromatin silencing
- GO:0006347, chromatin silencing at HML and HMR (sensu Saccharomyces)
- GO:0006348, chromatin silencing at telomere
- GO:0016246, RNA interference
- GO:0016440, transcriptional gene silencing
- GO:0016441, post-transcriptional gene silencing
- GO:0016458, gene silencing
- GO:0030422, RNA interference, production of guide RNAs
- GO:0030423, RNA interference, targeting of mRNA for destruction
- GO:0030466, chromatin silencing at silent mating type cassettes (sensu Fungi)
Terms movements under GO Slim term 'developmental processes ; GO:0007275'
- GO:0006929, substrate-bound cell migration
- GO:0006930, substrate-bound cell migration, cell extension
- GO:0006931, substrate-bound cell migration, cell attachment to substrate
- GO:0006932, substrate-bound cell migration, cell contraction
- GO:0006933, substrate-bound cell migration, cell release, from substrate
- GO:0006934, substrate-bound cell migration, adhesion receptor recycling
- GO:0007280, pole cell migration
- GO:0007297, follicle cell migration
- GO:0007298, border cell migration
- GO:0008354, germ-cell migration
- GO:0016477, cell migration
- GO:0030334, regulation of cell migration
- GO:0030335, positive regulation of cell migration
- GO:0030336, negative regulation of cell migration
- GO:0040039, inductive cell migration
Terms movements under GO Slim term 'physiological processes ; GO:0007582'
- GO:0007583, killer activity
- GO:0009406, virulence
Terms movements under GO Slim term 'metabolism ; GO:0008152'
+ GO:0000183, chromatin silencing at ribosomal DNA (rDNA)
+ GO:0001506, neurotransmitter synthesis and storage
+ GO:0006342, chromatin silencing
+ GO:0006343, establishment of chromatin silencing
+ GO:0006344, maintenance of chromatin silencing
+ GO:0006345, loss of chromatin silencing
+ GO:0006346, methylation-dependent chromatin silencing
+ GO:0006347, chromatin silencing at HML and HMR (sensu Saccharomyces)
+ GO:0006348, chromatin silencing at telomere
- GO:0006460, peptidylprolyl isomerase B reaction
+ GO:0009616, virus induced gene silencing
+ GO:0016246, RNA interference
+ GO:0016440, transcriptional gene silencing
+ GO:0016441, post-transcriptional gene silencing
+ GO:0016458, gene silencing
- GO:0018356, protein-phycobiliviolin linkage via S-phycobiliviolin-L-cysteine
+ GO:0019588, glycerol fermentation
+ GO:0019589, glycerol fermentation to propane-1,3-diol
+ GO:0030422, RNA interference, production of guide RNAs
+ GO:0030423, RNA interference, targeting of mRNA for destruction
+ GO:0030466, chromatin silencing at silent mating type cassettes (sensu Fungi)
Terms movements under GO Slim term 'catabolism ; GO:0009056'
+ GO:0006071, glycerol metabolism
+ GO:0006072, glycerol-3-phosphate metabolism
+ GO:0006114, glycerol biosynthesis
+ GO:0019563, glycerol catabolism
+ GO:0019564, aerobic glycerol catabolism
+ GO:0019565, aerobic glycerol fermentation
+ GO:0019588, glycerol fermentation
+ GO:0019589, glycerol fermentation to propane-1,3-diol
Terms movements under GO Slim term 'biosynthesis ; GO:0009058'
+ GO:0006094, gluconeogenesis
- GO:0006114, glycerol biosynthesis
Terms movements under GO Slim term 'response to biotic stimulus ; GO:0009607'
- GO:0000183, chromatin silencing at ribosomal DNA (rDNA)
- GO:0006342, chromatin silencing
- GO:0006343, establishment of chromatin silencing
- GO:0006344, maintenance of chromatin silencing
- GO:0006345, loss of chromatin silencing
- GO:0006346, methylation-dependent chromatin silencing
- GO:0006347, chromatin silencing at HML and HMR (sensu Saccharomyces)
- GO:0006348, chromatin silencing at telomere
- GO:0016246, RNA interference
- GO:0016440, transcriptional gene silencing
- GO:0016441, post-transcriptional gene silencing
- GO:0016458, gene silencing
+ GO:0030183, B-cell differentiation
+ GO:0030217, T-cell differentiation
- GO:0030422, RNA interference, production of guide RNAs
- GO:0030423, RNA interference, targeting of mRNA for destruction
- GO:0030466, chromatin silencing at silent mating type cassettes (sensu Fungi)
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
516131 None Incyte#27 [none]
Statistics:
Component: 973 terms, 48.5% defined (472 terms defined)
Function: 4994 terms, 12.6% defined (627 terms defined)
Process: 4711 terms, 27.7% defined (1303 terms defined)
Total: 10678 terms, 22.5% defined (2402 terms defined)
Term errors
GO:0006814, sodium transport
- secondary ID GO:0006815 lost
GO:0007151, sporulation (sensu Saccharomyces)
- definition removed