GO Monthly Release Notes for December 2001 ======================== Generated on Mon Oct 27 12:27:16 2003 Files used: component old: 2.96 new: 2.110 function old: 2.146 new: 2.160 process old: 2.155 new: 2.174 definitions old: 2.168 new: 2.186 GO Slim: Generic.0208 Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in component ontology (27 new terms) GO:0000500 GO:0005654 SGD D RNA polymerase I upstream activating factor complex GO:0005730 GO:0009842 GO:0009536 TAIR D cyanelle GO:0009843 GO:0009536 TAIR D thylakoid (sensu Glaucystophyceae) GO:0009579 GO:0019818 GO:0005737 FB D peroxisome vesicle GO:0019819 GO:0005777 FB D P1 peroxisome GO:0019820 GO:0005777 FB D P2 peroxisome GO:0019821 GO:0005777 FB D P3 peroxisome GO:0019822 GO:0005777 FB D P4 peroxisome GO:0019823 GO:0005777 FB D P5 peroxisome GO:0019824 GO:0005777 FB D P6 peroxisome GO:0019861 GO:0005623 FB D flagellum GO:0019866 GO:0005623 FB D inner membrane GO:0019867 GO:0005623 FB D outer membrane GO:0019897 GO:0005623 FB D extrinsic plasma membrane protein GO:0005886 GO:0019898 GO:0005623 FB D extrinsic membrane protein GO:0019907 GO:0005634 FB D cyclin-dependent protein kinase activating kinase holoenzyme GO:0019908 GO:0005634 FB D cyclin-dependent protein kinase holoenzyme GO:0019910 GO:0005739 FB D pyruvate dehydrogenase (lipoamide) phosphatase GO:0030478 GO:0005622 MAH D actin cap (sensu Fungi) GO:0005856 GO:0030479 GO:0005622 MAH D actin cortical patch (sensu Fungi) GO:0005856 GO:0030480 GO:0005622 MAH D cytokinetic ring (sensu Fungi) GO:0005856 GO:0030481 GO:0005622 MAH D septin ring (sensu Fungi) GO:0005856 GO:0030482 GO:0005856 MAH D actin cable (sensu Fungi) GO:0030483 GO:0005623 MAH D site of polarized growth (sensu Fungi) GO:0030484 GO:0005737 MAH D 800355 muscle fiber GO:0030485 GO:0005737 MAH D smooth muscle fiber GO:0030486 GO:0005737 MAH D smooth muscle dense body Term name changes in component ontology GO:0005863: muscle thick filament --> striated muscle thick filament GO:0005865: muscle thin filament --> striated muscle thin filament New definitions for component ontology terms (2 new definitions) GO:0005859, muscle myosin GO:0008024, transcription elongation factor complex b Term movements in component ontology: Terms movements under GO Slim term 'intracellular ; GO:0005622' + GO:0020007, apical complex + GO:0020008, rhoptry + GO:0020009, microneme + GO:0020010, conoid + GO:0020025, subpellicular microtubule + GO:0020031, polar ring of apical complex + GO:0020032, basal ring of apical complex Terms movements under GO Slim term 'cell ; GO:0005623' + GO:0009434, flagellum (sensu Eukarya) + GO:0009527, plastid outer membrane + GO:0009528, plastid inner membrane + GO:0020016, flagellar pocket + GO:0020017, flagellar membrane + GO:0020018, flagellar pocket membrane Terms movements under GO Slim term 'nucleus ; GO:0005634' + GO:0016533, cyclin-dependent protein kinase 5 activator Terms movements under GO Slim term 'chromosome ; GO:0005694' - GO:0020007, apical complex - GO:0020008, rhoptry - GO:0020009, microneme - GO:0020010, conoid - GO:0020025, subpellicular microtubule - GO:0020031, polar ring of apical complex - GO:0020032, basal ring of apical complex Terms movements under GO Slim term 'plasma membrane ; GO:0005886' + GO:0005834, heterotrimeric G-protein complex Terms movements under GO Slim term 'unlocalized ; GO:0005941' - GO:0016533, cyclin-dependent protein kinase 5 activator Terms movements under GO Slim term 'plastid ; GO:0009536' + GO:0030089, phycobilisome + GO:0030094, photosystem I (sensu Cyanobacteria) + GO:0030096, photosystem II (sensu Cyanobacteria) New terms in function ontology (50 new terms) GO:0019825 GO:0019825 FB D oxygen binding GO:0019826 GO:0019825 FB D oxygen sensor GO:0019828 GO:0030234 FB D aspartic protease inhibitor GO:0019829 GO:0000166 FB D cation-transporting ATPase GO:0003824 GO:0005215 GO:0019833 GO:0030234 FB D ice nucleation GO:0019834 GO:0030234 FB D phospholipase A2 inhibitor GO:0019838 GO:0005515 FB D growth factor binding GO:0019839 GO:0004871 FB D guanyl-nucleotide release factor GO:0008135 GO:0019840 GO:0005488 FB D isoprenoid binding GO:0019841 GO:0005488 FB D retinol binding GO:0019842 GO:0005488 FB D vitamin binding GO:0019843 GO:0003723 FB D rRNA binding GO:0019844 GO:0005198 FB D endotoxin GO:0019845 GO:0005198 FB D exotoxin GO:0019846 GO:0005198 FB D enterotoxin GO:0019847 GO:0005198 FB D neurotoxin GO:0019848 GO:0005198 FB D conotoxin GO:0019849 GO:0005198 FB D cytotoxin GO:0019851 GO:0003824 FB D D-tyrosyl-tRNA hydrolase GO:0019855 GO:0005215 FB D calcium channel inhibitor GO:0019862 GO:0005515 FB D IgA binding GO:0019863 GO:0005515 FB D IgE binding GO:0019864 GO:0005515 FB D IgG binding GO:0019865 GO:0005515 FB D immunoglobulin binding GO:0019869 GO:0005215 FB D chloride channel inhibitor GO:0019870 GO:0005215 FB D potassium channel inhibitor GO:0019871 GO:0005215 FB D sodium channel inhibitor GO:0019874 GO:0003824 FB D 6-aminohexanoate-cyclic-dimer hydrolase GO:0019875 GO:0003824 FB D 6-aminohexanoate-dimer hydrolase GO:0019887 GO:0030234 FB D protein kinase regulator GO:0019888 GO:0030234 FB D protein phosphatase regulator GO:0019893 GO:0003677 FB D DNA replication inhibitor GO:0019894 GO:0008092 FB D kinesin binding GO:0019895 GO:0008092 FB D kinesin-associated mitochondrial adaptor GO:0019899 GO:0005515 FB D enzyme binding GO:0019900 GO:0005515 FB D kinase binding GO:0019901 GO:0005515 FB D protein kinase binding GO:0019902 GO:0005515 FB D phosphatase binding GO:0019903 GO:0005515 FB D protein phosphatase binding GO:0019904 GO:0005515 FB D protein domain specific binding GO:0019905 GO:0005515 FB D syntaxin binding GO:0019906 GO:0004721 FB D pyruvate dehydrogenase (lipoamide) phosphatase, catalyst GO:0019909 GO:0004721 FB D pyruvate dehydrogenase (lipoamide) phosphatase, regulator GO:0019911 GO:0005198 FB D structural protein of myelin sheath GO:0019912 GO:0004672 FB D cyclin-dependent protein kinase activating kinase GO:0030234 GO:0019913 GO:0004672 FB D cyclin-dependent protein kinase activating kinase, catalyst GO:0030234 GO:0019914 GO:0004672 FB D cyclin-dependent protein kinase activating kinase, regulator GO:0030234 GO:0019992 GO:0008289 FB D diacylglycerol binding GO:0030487 GO:0003824 MAH D inositol-4,5-bisphosphate 5-phosphatase GO:0030492 GO:0005515 MAH D hemoglobin binding Term name changes in function ontology GO:0004221: ubiquitin thiolesterase --> ubiquitin C-terminal hydrolase GO:0004444: inositol-1,4,5-triphosphate 1-phosphatase --> inositol-1,4,5-trisphosphate 1-phosphatase GO:0004445: inositol-1,4,5-triphosphate 5-phosphatase --> inositol-1,4,5-trisphosphate 5-phosphatase GO:0005067: insulin-like growth factor receptor binding protein --> insulin-like growth factor receptor binding GO:0005080: protein kinase C binding protein --> protein kinase C binding GO:0008092: cytoskeletal protein binding protein --> cytoskeletal protein binding GO:0008596: calcium-dependent protein serine/threonine phosphatase catalyst --> calcium-dependent protein serine/threonine phosphatase, catalyst GO:0008597: calcium-dependent protein serine/threonine phosphatase regulator --> calcium-dependent protein serine/threonine phosphatase, regulator GO:0008598: protein phosphatase type 1 catalyst --> protein phosphatase type 1, catalyst GO:0008599: protein phosphatase type 1 regulator --> protein phosphatase type 1, regulator GO:0008600: protein phosphatase type 2A catalyst --> protein phosphatase type 2A, catalyst GO:0008601: protein phosphatase type 2A regulator --> protein phosphatase type 2A, regulator GO:0008602: cAMP-dependent protein kinase catalyst --> cAMP-dependent protein kinase, catalyst GO:0008603: cAMP-dependent protein kinase regulator --> cAMP-dependent protein kinase, regulator GO:0008604: casein kinase II catalyst --> casein kinase II, catalyst GO:0008605: casein kinase II regulator --> casein kinase II, regulator GO:0008606: phosphorylase kinase catalyst --> phosphorylase kinase, catalyst GO:0008607: phosphorylase kinase regulator --> phosphorylase kinase, regulator GO:0016313: inositol-1,4,5-triphosphate phosphatase --> inositol-1,4,5-trisphosphate phosphatase GO:0016537: cyclin-dependent protein kinase catalyst --> cyclin-dependent protein kinase, catalyst GO:0016538: cyclin-dependent protein kinase regulator --> cyclin-dependent protein kinase, regulator GO:0016918: retinaldehyde binding --> retinal binding GO:0017020: myosin phosphatase regulator --> myosin phosphatase, regulator GO:0017161: inositol-1,3,4-triphosphate 4-phosphatase --> inositol-1,3,4-trisphosphate 4-phosphatase GO:0019784: NEDD8 specific protease --> NEDD8-specific protease GO:0019785: ISG15 specific protease --> ISG15-specific protease GO:0019786: APG8 specific protease --> APG8-specific protease GO:0030358: protein phosphatase type 2B catalyst --> protein phosphatase type 2B, catalyst GO:0030359: protein phosphatase type 2B regulator --> protein phosphatase type 2B, regulator GO:0030361: protein phosphatase type 4 catalyst --> protein phosphatase type 4, catalyst GO:0030362: protein phosphatase type 4 regulator --> protein phosphatase type 4, regulator New definitions for function ontology terms (7 new definitions) GO:0003751, cyclin GO:0004873, asialoglycoprotein receptor GO:0008239, dipeptidyl-peptidase GO:0008241, peptidyl-dipeptidase GO:0008698, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016805, dipeptidase GO:0019783, ubiquitin-like-specific protease New term merges in function ontology GO:0004220 has been merged into GO:0008234, cysteine-type peptidase GO:0004870 has been merged into GO:0004869, cysteine protease inhibitor GO:0008433 has been merged into GO:0005085, guanyl-nucleotide exchange factor GO:0008497 has been merged into GO:0005548, phospholipid transporter GO:0016809 has been merged into GO:0004175, endopeptidase GO:0016904 has been merged into GO:0004889, nicotinic acetylcholine-activated cation-selective channel Term movements in function ontology: Terms movements under GO Slim term 'nucleotide binding ; GO:0000166' + GO:0005085, guanyl-nucleotide exchange factor + GO:0005086, ARF guanyl-nucleotide exchange factor + GO:0005087, RAN guanyl-nucleotide exchange factor + GO:0005088, RAS guanyl-nucleotide exchange factor + GO:0005089, RHO guanyl-nucleotide exchange factor + GO:0005090, SAR guanyl-nucleotide exchange factor + GO:0008321, RAL guanyl-nucleotide exchange factor + GO:0017034, RAP guanyl-nucleotide exchange factor + GO:0017112, RAB guanyl-nucleotide exchange factor + GO:0017132, cyclic nucleotide dependent guanyl-nucleotide exchange factor Terms movements under GO Slim term 'DNA binding ; GO:0003677' + GO:0000014, single-stranded DNA specific endodeoxyribonuclease + GO:0004520, endodeoxyribonuclease + GO:0004529, exodeoxyribonuclease + GO:0004530, deoxyribonuclease I + GO:0004531, deoxyribonuclease II + GO:0004536, deoxyribonuclease + GO:0004537, caspase-activated deoxyribonuclease + GO:0008296, 3'-5' exodeoxyribonuclease + GO:0008297, single-stranded DNA specific exodeoxyribonuclease + GO:0008309, double-stranded DNA specific exodeoxyribonuclease + GO:0008310, single-stranded DNA specific 3'-5' exodeoxyribonuclease + GO:0008311, double-stranded DNA specific 3'-5' exodeoxyribonuclease + GO:0008821, crossover junction endoribonuclease + GO:0008833, deoxyribonuclease IV (phage T4-induced) + GO:0008844, endodeoxyribonuclease RUS + GO:0008852, exodeoxyribonuclease I + GO:0008853, exodeoxyribonuclease III + GO:0008854, exodeoxyribonuclease V + GO:0008855, exodeoxyribonuclease VII + GO:0008856, exodeoxyribonuclease X + GO:0008858, exonuclease VIII + GO:0008946, oligoribonuclease + GO:0008997, ribonuclease R + GO:0009035, type I site-specific deoxyribonuclease + GO:0009036, type II site-specific deoxyribonuclease + GO:0009381, excinuclease ABC + GO:0015666, restriction endodeoxyribonuclease + GO:0015668, type III site-specific deoxyribonuclease + GO:0016888, endodeoxyribonuclease, producing 5'-phosphomonoesters + GO:0016889, endodeoxyribonuclease, producing other than 5'-phosphomonoesters + GO:0016890, site-specific endodeoxyribonuclease, specific for altered base + GO:0016895, exodeoxyribonuclease, producing 5'-phosphomonoesters + GO:0017108, flap endonuclease + GO:0019000, endonuclease G + GO:0019004, endodeoxyribonuclease III Terms movements under GO Slim term 'RNA binding ; GO:0003723' + GO:0000171, ribonuclease MRP + GO:0000175, 3'-5' exoribonuclease + GO:0000213, tRNA-intron endonuclease + GO:0004521, endoribonuclease + GO:0004522, pancreatic ribonuclease + GO:0004523, ribonuclease H + GO:0004524, ribonuclease H1 + GO:0004525, ribonuclease III + GO:0004526, ribonuclease P + GO:0004532, exoribonuclease + GO:0004533, exoribonuclease H + GO:0004534, 5'-3' exoribonuclease + GO:0004535, poly(A)-specific ribonuclease + GO:0004540, ribonuclease + GO:0004549, tRNA-specific ribonuclease + GO:0008419, RNA lariat debranching enzyme + GO:0008847, enterobacter ribonuclease + GO:0008859, exoribonuclease II + GO:0008946, oligoribonuclease + GO:0008995, ribonuclease E + GO:0008996, ribonuclease G + GO:0008997, ribonuclease R + GO:0016443, bidentate ribonuclease III + GO:0016891, endoribonuclease, producing 5'-phosphomonoesters + GO:0016892, endoribonuclease, producing other than 5'-phosphomonoesters + GO:0016893, endoribonuclease, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters + GO:0016894, endoribonuclease, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters + GO:0016896, exoribonuclease, producing 5'-phosphomonoesters + GO:0016897, exoribonuclease, producing 3'-phosphomonoesters + GO:0019000, endonuclease G + GO:0019040, viral host shutoff protein Terms movements under GO Slim term 'enzyme ; GO:0003824' - GO:0004741, pyruvate dehydrogenase (lipoamide) phosphatase + GO:0016941, natriuretic peptide receptor Terms movements under GO Slim term 'protein phosphatase ; GO:0004721' + GO:0004741, pyruvate dehydrogenase (lipoamide) phosphatase Terms movements under GO Slim term 'receptor ; GO:0004872' - GO:0019182, histamine-gated chloride channel Terms movements under GO Slim term 'transporter ; GO:0005215' - GO:0004498, calcidiol 1-monooxygenase - GO:0004500, dopamine-beta-monooxygenase - GO:0004507, steroid 11-beta-monooxygenase - GO:0004508, steroid 17-alpha-monooxygenase - GO:0004509, steroid 21-monooxygenase - GO:0004796, thromboxane-A synthase + GO:0005548, phospholipid transporter - GO:0008116, prostaglandin-I synthase - GO:0008123, cholesterol 7-alpha-monooxygenase - GO:0008387, steroid 7-alpha-hydroxylase - GO:0008388, testosterone 15-alpha-hydroxylase - GO:0008389, coumarin 7-hydroxylase - GO:0008390, testosterone 16-alpha-hydroxylase - GO:0008391, arachidonic acid monooxygenase - GO:0008392, arachidonic acid epoxygenase - GO:0008393, fatty acid (omega-1)-hydroxylase - GO:0008394, olfactory-specific steroid hydroxylase - GO:0008396, oxysterol 7-alpha-hydroxylase - GO:0008397, sterol 12-alpha-hydroxylase - GO:0008398, lanosterol 14-alpha-demethylase - GO:0008399, naphthalene hydroxylase - GO:0008401, retinoic acid 4-hydroxylase - GO:0008402, aromatase - GO:0008403, 25-hydroxycholecalciferol-24-hydroxylase - GO:0008404, arachidonic acid 14,15-epoxygenase - GO:0008405, arachidonic acid 11,12-epoxygenase + GO:0008525, phosphatidylcholine transporter + GO:0008526, phosphatidylinositol transporter - GO:0015034, cytochrome P450 - GO:0016968, P450 nitric oxide reductase + GO:0017164, nicotinic acetylcholine receptor-associated protein Terms movements under GO Slim term 'ion channel ; GO:0005216' + GO:0017164, nicotinic acetylcholine receptor-associated protein Terms movements under GO Slim term 'ligand binding or carrier ; GO:0005488' - GO:0001524, globin - GO:0004498, calcidiol 1-monooxygenase - GO:0004500, dopamine-beta-monooxygenase - GO:0004507, steroid 11-beta-monooxygenase - GO:0004508, steroid 17-alpha-monooxygenase - GO:0004509, steroid 21-monooxygenase - GO:0004796, thromboxane-A synthase - GO:0005344, oxygen transporter - GO:0008116, prostaglandin-I synthase - GO:0008123, cholesterol 7-alpha-monooxygenase - GO:0008387, steroid 7-alpha-hydroxylase - GO:0008388, testosterone 15-alpha-hydroxylase - GO:0008389, coumarin 7-hydroxylase - GO:0008390, testosterone 16-alpha-hydroxylase - GO:0008391, arachidonic acid monooxygenase - GO:0008392, arachidonic acid epoxygenase - GO:0008393, fatty acid (omega-1)-hydroxylase - GO:0008394, olfactory-specific steroid hydroxylase - GO:0008396, oxysterol 7-alpha-hydroxylase - GO:0008397, sterol 12-alpha-hydroxylase - GO:0008398, lanosterol 14-alpha-demethylase - GO:0008399, naphthalene hydroxylase - GO:0008401, retinoic acid 4-hydroxylase - GO:0008402, aromatase - GO:0008403, 25-hydroxycholecalciferol-24-hydroxylase - GO:0008404, arachidonic acid 14,15-epoxygenase - GO:0008405, arachidonic acid 11,12-epoxygenase - GO:0015034, cytochrome P450 - GO:0016968, P450 nitric oxide reductase - GO:0016969, hemerythrin - GO:0016970, hemocyanin Terms movements under GO Slim term 'protein binding ; GO:0005515' - GO:0003777, microtubule motor - GO:0003778, dynactin motor - GO:0005523, tropomyosin binding - GO:0008017, microtubule binding - GO:0008351, microtubule severing - GO:0008569, minus-end-directed kinesin ATPase - GO:0008574, plus-end-directed kinesin ATPase - GO:0015631, tubulin binding - GO:0016326, kinesin motor - GO:0017021, myosin phosphatase myosin binding - GO:0017022, myosin binding - GO:0017024, myosin I binding - GO:0017166, vinculin binding + GO:0019766, IgA receptor + GO:0019767, IgE receptor + GO:0019768, high affinity IgE receptor + GO:0019769, low affinity IgE receptor + GO:0019770, IgG receptor + GO:0019771, high affinity IgG receptor + GO:0019772, low affinity IgG receptor - GO:0030172, troponin C binding Terms movements under GO Slim term 'cytoskeletal protein binding ; GO:0008092' + GO:0003777, microtubule motor + GO:0003778, dynactin motor + GO:0005523, tropomyosin binding + GO:0008017, microtubule binding + GO:0008351, microtubule severing + GO:0008569, minus-end-directed kinesin ATPase + GO:0008574, plus-end-directed kinesin ATPase + GO:0015631, tubulin binding + GO:0016326, kinesin motor + GO:0017021, myosin phosphatase myosin binding + GO:0017022, myosin binding + GO:0017024, myosin I binding + GO:0017166, vinculin binding + GO:0030172, troponin C binding Terms movements under GO Slim term 'peptidase ; GO:0008233' + GO:0004221, ubiquitin C-terminal hydrolase Terms movements under GO Slim term 'lipid binding ; GO:0008289' + GO:0017128, phospholipid scramblase Terms movements under GO Slim term 'oxygen binding ; GO:0019825' + GO:0001524, globin + GO:0004498, calcidiol 1-monooxygenase + GO:0004500, dopamine-beta-monooxygenase + GO:0004507, steroid 11-beta-monooxygenase + GO:0004508, steroid 17-alpha-monooxygenase + GO:0004509, steroid 21-monooxygenase + GO:0004796, thromboxane-A synthase + GO:0005344, oxygen transporter + GO:0008116, prostaglandin-I synthase + GO:0008123, cholesterol 7-alpha-monooxygenase + GO:0008387, steroid 7-alpha-hydroxylase + GO:0008388, testosterone 15-alpha-hydroxylase + GO:0008389, coumarin 7-hydroxylase + GO:0008390, testosterone 16-alpha-hydroxylase + GO:0008391, arachidonic acid monooxygenase + GO:0008392, arachidonic acid epoxygenase + GO:0008393, fatty acid (omega-1)-hydroxylase + GO:0008394, olfactory-specific steroid hydroxylase + GO:0008396, oxysterol 7-alpha-hydroxylase + GO:0008397, sterol 12-alpha-hydroxylase + GO:0008398, lanosterol 14-alpha-demethylase + GO:0008399, naphthalene hydroxylase + GO:0008401, retinoic acid 4-hydroxylase + GO:0008402, aromatase + GO:0008403, 25-hydroxycholecalciferol-24-hydroxylase + GO:0008404, arachidonic acid 14,15-epoxygenase + GO:0008405, arachidonic acid 11,12-epoxygenase + GO:0015034, cytochrome P450 + GO:0016968, P450 nitric oxide reductase + GO:0016969, hemerythrin + GO:0016970, hemocyanin Terms movements under GO Slim term 'enzyme regulator ; GO:0030234' + GO:0003751, cyclin + GO:0003752, G1/S-specific cyclin + GO:0003753, G2/M-specific cyclin + GO:0008597, calcium-dependent protein serine/threonine phosphatase, regulator + GO:0008599, protein phosphatase type 1, regulator + GO:0008601, protein phosphatase type 2A, regulator + GO:0008603, cAMP-dependent protein kinase, regulator + GO:0008605, casein kinase II, regulator + GO:0008607, phosphorylase kinase, regulator + GO:0015073, phosphatidylinositol 3-kinase, class I, regulator + GO:0016538, cyclin-dependent protein kinase, regulator + GO:0017020, myosin phosphatase, regulator + GO:0030359, protein phosphatase type 2B, regulator + GO:0030362, protein phosphatase type 4, regulator New terms in process ontology (118 new terms) GO:0000302 GO:0006950 SGD D response to reactive oxygen species GO:0008152 GO:0009607 GO:0000303 GO:0006950 SGD D response to superoxide GO:0008152 GO:0009607 GO:0000304 GO:0006950 SGD D response to singlet oxygen GO:0008152 GO:0009607 GO:0000305 GO:0006950 SGD D response to oxygen radicals GO:0008152 GO:0009607 GO:0009844 GO:0007275 TAIR D germination GO:0009845 GO:0007275 TAIR D seed germination GO:0009846 GO:0007275 TAIR D pollen germination GO:0007582 GO:0009847 GO:0007275 TAIR D spore germination GO:0009848 GO:0008152 TAIR D indole acetic acid biosynthesis via tryptophan GO:0009058 GO:0009849 GO:0008152 TAIR D indole acetic acid biosynthesis (tryptophan independent) GO:0009058 GO:0009850 GO:0008152 TAIR D auxin metabolism GO:0009851 GO:0008152 TAIR D auxin biosynthesis GO:0009058 GO:0009852 GO:0008152 TAIR D auxin catabolism GO:0009853 GO:0008152 TAIR D photorespiration GO:0009628 GO:0009854 GO:0008152 TAIR D oxidative photosynthetic carbon pathway GO:0009628 GO:0009856 GO:0007582 TAIR D pollination GO:0009857 GO:0007154 TAIR D pollen recognition GO:0007582 GO:0009858 GO:0007154 TAIR D compatible pollen-pistil interaction GO:0007582 GO:0009859 GO:0007582 TAIR D pollen hydration GO:0009860 GO:0007582 TAIR D pollen tube growth GO:0009865 GO:0007154 TAIR D pollen tube adhesion GO:0007582 GO:0009869 GO:0007154 TAIR D incompatible pollen-pistil interaction GO:0009872 GO:0007154 TAIR D gametophytic self-incompatibility GO:0009874 GO:0007154 TAIR D sporophytic self-incompatibility GO:0009875 GO:0007154 TAIR D pollen-pistil interaction GO:0009876 GO:0007154 TAIR D pollen adhesion GO:0007582 GO:0009877 GO:0007582 TAIR D nodulation GO:0009878 GO:0007275 TAIR D nodule morphogenesis GO:0007582 GO:0019817 GO:0006996 FB D peroxisome vesicle fusion GO:0019827 GO:0007275 FB D stem cell maintenance GO:0019830 GO:0006950 FB D cadmium sensitivity/resistance GO:0009628 GO:0019831 GO:0006950 FB D chromate sensitivity/resistance GO:0009628 GO:0019832 GO:0006950 FB D mercuric sensitivity/resistance GO:0009628 GO:0019835 GO:0008219 FB D cytolysis GO:0019836 GO:0008219 FB D hemolysis GO:0019837 GO:0006950 FB D herbicide susceptibility/resistance GO:0008152 GO:0009628 GO:0019852 GO:0006731 FB D L-ascorbic acid metabolism GO:0019853 GO:0006731 FB D L-ascorbic acid biosynthesis GO:0009058 GO:0019854 GO:0006731 FB D L-ascorbic acid catabolism GO:0009056 GO:0019856 GO:0008152 FB D pyrimidine biosynthesis GO:0009058 GO:0019857 GO:0008152 FB D 5-methylcytosine metabolism GO:0019858 GO:0008152 FB D cytosine metabolism GO:0019859 GO:0008152 FB D thymine metabolism GO:0019860 GO:0008152 FB D uracil metabolism GO:0019872 GO:0008152 FB D streptomycin biosynthesis GO:0009058 GO:0009628 GO:0019873 GO:0006950 FB D tellurium sensitivity/resistance GO:0009628 GO:0019876 GO:0008152 FB D nylon degradation GO:0009628 GO:0019877 GO:0006519 FB D diaminopimelate biosynthesis GO:0009058 GO:0019878 GO:0006519 FB D lysine biosynthesis, aminoadipic pathway GO:0009058 GO:0019879 GO:0006464 FB D peptidyl-thyronine biosynthesis GO:0019880 GO:0009628 FB D bacteriocin susceptibility/resistance GO:0019881 GO:0009628 FB D streptomycin susceptibility/resistance GO:0019882 GO:0009607 FB D antigen presentation GO:0019883 GO:0009607 FB D antigen presentation, endogenous antigen via MHC class I GO:0019884 GO:0009607 FB D antigen presentation, exogenous antigen via MHC class II GO:0019885 GO:0009607 FB D antigen processing, endogenous antigen via MHC class I GO:0019886 GO:0009607 FB D antigen processing, exogenous antigen via MHC class II GO:0019889 GO:0008152 FB D pteridine metabolism GO:0019896 GO:0007010 FB D axon transport of mitochondrion GO:0019915 GO:0006810 FB D lipid storage GO:0019916 GO:0006464 FB D peptidyl-alanine racemization, direct GO:0006519 GO:0019917 GO:0006464 FB D peptidyl-alanine racemization, via peptidyl-L-serine GO:0006519 GO:0019918 GO:0006464 FB D peptidyl-arginine methylation, to symmetrical-dimethyl arginine GO:0019919 GO:0006464 FB D peptidyl-arginine methylation, to unsymmetrical-dimethyl arginine GO:0019920 GO:0006464 FB D peptidyl-1-thioglycine biosynthesis, internal GO:0006731 GO:0019921 GO:0006464 FB D peptidyl-1-thioglycine biosynthesis, carboxy-terminal GO:0006731 GO:0019922 GO:0006464 FB D protein-chromophore linkage via peptidyl-cysteine GO:0019923 GO:0006464 FB D alpha-1-microglobulin-chromophore linkage GO:0019926 GO:0006464 FB D peptidyl-tryptophan oxidation to tryptophyl quinone GO:0019927 GO:0006464 FB D protein-protein cross-linking via 4'-(S-L-cysteinyl)-L-tryptophyl quinone GO:0019928 GO:0006464 FB D protein-protein cross-linking via 3-(S-L-cysteinyl)-L-aspartic acid GO:0019929 GO:0006464 FB D protein-protein cross-linking via 4-(S-L-cysteinyl)-L-glutamic acid GO:0019930 GO:0006464 FB D biosynthesis of cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid peptidyl-aspartate ester GO:0019931 GO:0006464 FB D protein-chromophore linkage via peptidyl-N6-3-dehydroretinal-L-lysine GO:0019932 GO:0007165 FB D second-messenger-mediated signaling GO:0019933 GO:0007165 FB D cAMP-mediated signaling GO:0019934 GO:0007165 FB D cGMP-mediated signaling GO:0019935 GO:0007165 FB D cyclic-nucleotide-mediated signaling GO:0019936 GO:0007165 FB D inositol phospholipid-mediated signaling GO:0019990 GO:0008152 FB D pteridine catabolism GO:0019991 GO:0007028 FB D septate junction assembly GO:0030449 GO:0006950 MAH D regulation of complement activation GO:0009607 GO:0030450 GO:0006950 MAH D regulation of complement activation, classical pathway GO:0009607 GO:0030451 GO:0006950 MAH D regulation of complement activation, alternative pathway GO:0009607 GO:0030452 GO:0008152 MAH D group I intron catabolism GO:0009056 GO:0030453 GO:0007275 MAH D adaptation to mating signal (sensu Fungi) GO:0009605 GO:0009628 GO:0030454 GO:0007275 MAH D transduction of mating signal (sensu Fungi) GO:0009605 GO:0009628 GO:0030455 GO:0007165 MAH D MAPKKK cascade (mating sensu Fungi) GO:0030456 GO:0007165 MAH D activation of MAPK (mating sensu Fungi) GO:0030457 GO:0007165 MAH D activation of MAPKK (mating sensu Fungi) GO:0030458 GO:0007165 MAH D activation of MAPKKK (mating sensu Fungi) GO:0030459 GO:0007165 MAH D inactivation of MAPK (mating sensu Fungi) GO:0030460 GO:0007165 MAH D nuclear translocation of MAPK (mating sensu Fungi) GO:0030461 GO:0007275 MAH D mating (sensu Fungi) GO:0030462 GO:0007275 MAH D zygote formation (sensu Fungi) GO:0030463 GO:0007275 MAH D cell aging (sensu Fungi) GO:0030464 GO:0007275 MAH D aging dependent sterility (sensu Fungi) GO:0030465 GO:0007275 MAH D autophagic death (sensu Fungi) GO:0030466 GO:0006259 MAH D chromatin silencing at silent mating type cassettes (sensu Fungi) GO:0006950 GO:0009607 GO:0030467 GO:0007010 MAH D establishment and/or maintenance of cell polarity (sensu Fungi) GO:0030468 GO:0007010 MAH D establishment of cell polarity (sensu Fungi) GO:0030469 GO:0007010 MAH D maintenance of cell polarity (sensu Fungi) GO:0030470 GO:0008151 MAH D spore germination (sensu Fungi) GO:0030471 GO:0007049 MAH D spindle pole body and microtubule cycle (sensu Fungi) GO:0030472 GO:0007049 MAH D mitotic spindle assembly (sensu Fungi) GO:0030473 GO:0007049 MAH D nuclear migration (sensu Fungi) GO:0030474 GO:0007049 MAH D spindle pole body duplication (sensu Fungi) GO:0030475 GO:0007049 MAH D spindle pole body separation (sensu Fungi) GO:0030476 GO:0008151 MAH D spore wall assembly (sensu Fungi) GO:0030477 GO:0007275 MAH D conjugation (sensu Fungi) GO:0030488 GO:0008152 MAH D tRNA methylation GO:0030489 GO:0006350 MAH D processing of 27S pre-rRNA GO:0007028 GO:0008152 GO:0030490 GO:0006350 MAH D processing of 20S pre-rRNA GO:0007028 GO:0008152 GO:0030491 GO:0006259 MAH D heteroduplex formation GO:0030493 GO:0006731 MAH D bacteriochlorophyll metabolism GO:0030494 GO:0006731 MAH D bacteriochlorophyll biosynthesis GO:0009058 GO:0030495 GO:0006731 MAH D bacteriochlorophyll catabolism GO:0009056 GO:0040024 GO:0007275 WB D dauer larval development (sensu Nematoda) New obsoletions in process ontology GO:0018086, alanine racemization: No reason given. GO:0018314, protein-pyrroloquinoline-quinone linkage: No reason given. Term name changes in process ontology GO:0007022: chaperonine-mediated tubulin folding --> chaperonin-mediated tubulin folding GO:0018078: peptidyl-tyrosine iodination --> peptidyl-thyronine iodination GO:0018095: protein glutaminylation --> protein polyglutamylation GO:0018250: peptidyl-alanine dehydration --> peptidyl-dehydroalanine biosynthesis GO:0018252: protein-chromophore linkage via L-seryl-5-imidazolinone glycine --> biosynthesis of protein-protein cross-link via L-seryl-5-imidazolinone glycine GO:0018253: protein-protein cross-linking via L-cysteinyl-5-imidazolinone glycine --> biosynthesis of protein-protein cross-link via 5-imidazolinone glycine GO:0018284: iron incorporation into iron-sulfur cluster via tetrakis-L-cysteinyl iron --> iron incorporation into protein via tetrakis-L-cysteinyl iron GO:0018290: molybdenum incorporation into iron-sulfur cluster via L-cysteinyl homocitryl molybdenum-heptairon-nonasulfide --> iron and molybdenum incorporation into iron-molybdenum-sulfur cluster via L-cysteinyl homocitryl molybdenum-heptairon-nonasulfide GO:0018299: iron incorporation into iron-sulfur cluster via bis-L-cysteinyl bis-L-histidino diiron disulfide --> iron incorporation into the Rieske iron-sulfur cluster via bis-L-cysteinyl bis-L-histidino diiron disulfide GO:0018386: N-terminal peptidyl-amino acid deamination to N-pyruvic acid 2-iminyl-L-cysteine --> N-terminal peptidyl-cysteine condensation with pyruvate to form N-pyruvic acid 2-iminyl-L-cysteine GO:0018388: N-terminal peptidyl-amino acid deamination to N-pyruvic acid 2-iminyl-L-valine --> N-terminal peptidyl-valine condensation with pyruvate to form N-pyruvic acid 2-iminyl-L-valine GO:0018407: peptidyl-tyrosine iodination to form 3',3'',5'-triiodo-L-thyronine --> peptidyl-thyronine iodination to form 3',3'',5'-triiodo-L-thyronine GO:0018408: peptidyl-tyrosine iodination to form 3',3'',5',5''-tetraiodo-L-thyronine --> peptidyl-thyronine iodination to form 3',3'',5',5''-tetraiodo-L-thyronine GO:0018424: peptidyl-glutamic acid ADP-ribosylation --> peptidyl-glutamic acid poly-ADP-ribosylation GO:0040018: positive of body size --> positive regulation of body size New definitions for process ontology terms (25 new definitions) GO:0002119, larval development (sensu Nematoda) GO:0007308, oocyte construction GO:0007344, pronuclear fusion GO:0007397, histogenesis and organogenesis GO:0007582, physiological processes GO:0008213, protein amino acid alkylation GO:0008219, cell death GO:0008406, gonad development GO:0018101, peptidyl-citrulline biosynthesis GO:0018202, peptidyl-histidine modification GO:0018295, protein-FAD linkage via 3'-(8alpha-FAD)-L-histidine GO:0018362, peroxidase-heme linkage via hemediol-L-aspartyl ester-L-glutamyl ester GO:0018363, peroxidase-heme linkage via hemediol-L-aspartyl ester-L-glutamyl ester-L-methionine sulfonium GO:0019122, peptidyl-alanine racemization GO:0019123, peptidyl-methionine racemization GO:0019124, peptidyl-isoleucine racemization GO:0019125, peptidyl-phenylalanine racemization GO:0019126, peptidyl-serine racemization GO:0019128, peptidyl-tryptophan racemization GO:0019129, peptidyl-leucine racemization GO:0030333, antigen processing GO:0040020, control of meiosis GO:0040021, hermaphrodite germ-line sex determination GO:0040022, feminization of hermaphroditic germ-line (sensu Nematoda) GO:0040023, nuclear positioning New term merges in process ontology GO:0018087 has been merged into GO:0019123, peptidyl-methionine racemization GO:0018088 has been merged into GO:0019124, peptidyl-isoleucine racemization GO:0018089 has been merged into GO:0019125, peptidyl-phenylalanine racemization GO:0018090 has been merged into GO:0019126, peptidyl-serine racemization GO:0018092 has been merged into GO:0019128, peptidyl-tryptophan racemization GO:0018093 has been merged into GO:0019129, peptidyl-leucine racemization GO:0018440 has been merged into GO:0018439, peptidyl-leucine esterfication GO:0019223 has been merged into GO:0006363, transcription termination, from Pol I promoter GO:0019224 has been merged into GO:0006369, transcription termination, from Pol II promoter GO:0019225 has been merged into GO:0006386, transcription termination, from Pol III promoter Term movements in process ontology: Terms movements under GO Slim term 'protein modification ; GO:0006464' - GO:0018086, alanine racemization - GO:0018314, protein-pyrroloquinoline-quinone linkage Terms movements under GO Slim term 'amino acid and derivative metabolism ; GO:0006519' - GO:0009683, indole acetic acid metabolism - GO:0009684, indole acetic acid biosynthesis - GO:0018086, alanine racemization Terms movements under GO Slim term 'signal transduction ; GO:0007165' + GO:0016061, regulation of light-activated channels Terms movements under GO Slim term 'developmental processes ; GO:0007275' - GO:0007329, pheromone induction of gene expression, from Pol II promoter - GO:0009371, pheromone induction of gene expression - GO:0009372, quorum sensing - GO:0009373, pheromone regulation of gene expression + GO:0030434, pheromone response (sensu Fungi) Terms movements under GO Slim term 'physiological processes ; GO:0007582' + GO:0009604, perception of symbiotic bacteria + GO:0009609, response to symbiotic bacteria Terms movements under GO Slim term 'cell growth and/or maintenance ; GO:0008151' - GO:0007329, pheromone induction of gene expression, from Pol II promoter - GO:0007333, conjugation (sensu Saccharomyces) - GO:0007334, agglutination - GO:0009371, pheromone induction of gene expression - GO:0009372, quorum sensing - GO:0009373, pheromone regulation of gene expression Terms movements under GO Slim term 'metabolism ; GO:0008152' + GO:0006135, dihydropteridine reduction + GO:0006556, S-adenosylmethionine biosynthesis + GO:0006728, pteridine biosynthesis + GO:0006729, tetrahydrobiopterin biosynthesis + GO:0006979, oxidative stress response + GO:0006980, redox signal response + GO:0006981, activation of SoxR protein + GO:0006982, response to lipid hydroperoxide + GO:0009683, indole acetic acid metabolism + GO:0009684, indole acetic acid biosynthesis Terms movements under GO Slim term 'biosynthesis ; GO:0009058' - GO:0019800, protein-protein cross-linking via chondroitin 4-sulfate glycosaminoglycan Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628' + GO:0006556, S-adenosylmethionine biosynthesis SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any none Statistics: Component: 945 terms, 40.8% defined (386 terms defined) Function: 4820 terms, 10.3% defined (495 terms defined) Process: 4540 terms, 25.0% defined (1137 terms defined) Total: 10305 terms, 19.6% defined (2018 terms defined) Term errors GO:0000301, retrograde (vesicle recycling within Golgi) transport - definition removed GO:0001580, bitter taste perception - definition removed GO:0001581, sour taste perception - definition removed GO:0001582, sweet taste perception - definition removed GO:0001583, salty taste perception - definition removed GO:0003823, antibody - definition removed GO:0004892, B cell receptor - definition removed GO:0006097, glyoxylate cycle - definition removed GO:0006113, fermentation - definition removed GO:0006890, retrograde (Golgi to ER) transport - definition removed GO:0007320, insemination - definition removed GO:0007607, taste - definition removed GO:0009035, type I site-specific deoxyribonuclease - definition removed GO:0009036, type II site-specific deoxyribonuclease - definition removed GO:0015668, type III site-specific deoxyribonuclease - definition removed GO:0019812, type I site-specific deoxyribonuclease - definition removed GO:0019813, type III site-specific deoxyribonuclease - definition removed GO:0019814, immunoglobulin - definition removed GO:0019815, B cell receptor - definition removed GO:0019816, B cell receptor accessory molecule complex - definition removed GO:0020037, heme binding - definition removed GO:0030431, sleep - definition removed GO:0030433, ER-associated protein degradation - definition removed GO:0030435, sporulation - definition removed GO:0030436, sporulation (sensu Bacteria) - definition removed GO:0030437, sporulation (sensu Fungi) - definition removed GO:0030444, microtubule depolymerization during nuclear congression - definition removed GO:0030445, yeast-form cell wall - definition removed GO:0030446, hyphal cell wall - definition removed GO:0030447, filamentous growth - definition removed GO:0030448, hyphal growth - definition removed