GO Monthly Release Notes for April 2001
========================
Generated on Mon Oct 27 12:26:22 2003
Files used:
component old: 2.2 new: 2.13
function old: 2.6 new: 2.31
process old: 2.4 new: 2.21
definitions old: 2.4 new: 2.16
GO Slim: Generic.0208
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in component ontology (10 new terms)
GO:0016327 GO:0005886 FB D apicolateral plasma membrane
GO:0016328 GO:0005886 FB D lateral plasma membrane
GO:0016341 GO:0005578 FB D other collagen
GO:0016342 GO:0005886 FB D catenin
GO:0017023 GO:0005941 FB D myosin phosphatase
GO:0017052 GO:0005941 FB D insulin-like growth factor binding protein
GO:0017053 GO:0005654 FB D transcriptional repressor complex
GO:0017054 GO:0005654 FB D negative co-factor 2 complex
GO:0017059 GO:0005575 FB D serine C-palmitoyltransferase
GO:0005783
GO:0017071 GO:0005575 FB D intracellular cyclic nucleotide activated cation channel
Term movements in component ontology:
Terms movements under GO Slim term 'cellular_component ; GO:0005575'
+ GO:0005587, collagen type IV
+ GO:0009362, succinate dehydrogenase-(ubiquinone)
Terms movements under GO Slim term 'mitochondrion ; GO:0005739'
+ GO:0009362, succinate dehydrogenase-(ubiquinone)
Terms movements under GO Slim term 'unlocalized ; GO:0005941'
- GO:0009362, succinate dehydrogenase-(ubiquinone)
New terms in function ontology (76 new terms)
GO:0000286 GO:0003824 SGD D alanine dehydrogenase
GO:0000287 GO:0005488 SGD D magnesium binding
GO:0016326 GO:0003774 FB D kinesin motor
GO:0005515
GO:0016329 GO:0016329 FB D apoptosis regulator
GO:0016343 GO:0008092 FB D cytoskeletal anchor protein
GO:0016977 GO:0003824 FB D chitosanase
GO:0016978 GO:0003824 FB D lipoate-protein ligase B
GO:0016979 GO:0003824 FB D lipoate-protein ligase
GO:0016980 GO:0003824 FB D creatinase
GO:0016983 GO:0003824 FB D cytokine beta-glucosidase
GO:0016984 GO:0003824 FB D ribulose-bisphosphate carboxylase
GO:0016985 GO:0003824 FB D mannan endo-1,4-beta-mannosidase
GO:0016986 GO:0003700 FB D transcription initiation factor
GO:0016987 GO:0003700 FB D sigma factor
GO:0016988 GO:0003700 FB D transcription initiation factor antagonist
GO:0016989 GO:0003700 FB D sigma factor antagonist
GO:0016990 GO:0003824 FB D arginine deiminase
GO:0016991 GO:0003824 FB D gentamicin 3'-N-acetyltransferase
GO:0016992 GO:0003824 FB D lipoate synthase
GO:0016993 GO:0003824 FB D precorrin-8X methylmutase
GO:0016994 GO:0003824 FB D precorrin-6X reductase
GO:0016995 GO:0003824 FB D cholesterol oxidase
GO:0016996 GO:0003824 FB D endo-alpha-sialidase
GO:0016997 GO:0003824 FB D alpha-sialidase
GO:0017002 GO:0004672 FB D activin receptor
GO:0004872
GO:0017005 GO:0003824 FB D tyrosyl-DNA phosophodiesterase
GO:0017016 GO:0004871 FB D RAS interactor
GO:0017017 GO:0004721 FB D MAP kinase phosphatase
GO:0017018 GO:0004721 FB D myosin phosphatase
GO:0017019 GO:0003824 FB D myosin phosphatase catalyst
GO:0004721
GO:0017020 GO:0003824 FB D myosin phosphatase regulator
GO:0004721
GO:0017021 GO:0003824 FB D myosin phosphatase myosin binding
GO:0004721
GO:0005515
GO:0017022 GO:0005515 FB D myosin binding
GO:0017024 GO:0005515 FB D myosin I binding
GO:0017025 GO:0005515 FB D TATA-binding protein binding
GO:0017026 GO:0008233 FB D procollagen C-endopeptidase
GO:0017027 GO:0004871 FB D transmembrane receptor protein serine/threonine kinase receptor-associated protein
GO:0017028 GO:0017028 FB D protein stabilization
GO:0017029 GO:0017028 FB D lysosomal protein stabilization
GO:0017030 GO:0017028 FB D beta-galactosidase stabilization
GO:0017031 GO:0004871 FB D RHO interactor
GO:0017032 GO:0005215 FB D potassium:amino acid transporter
GO:0017033 GO:0005515 FB D DNA topoisomerase I binding
GO:0017034 GO:0004871 FB D RAP guanyl-nucleotide exchange factor
GO:0017039 GO:0008233 FB D dipeptidyl-peptidase III
GO:0017040 GO:0003824 FB D ceramidase
GO:0017041 GO:0003824 FB D galactosylgalactosylglucosylceramidase
GO:0017042 GO:0003824 FB D glycosylceramidase
GO:0017043 GO:0005102 FB D adrenocorticotropin
GO:0017044 GO:0005102 FB D alpha-melanocyte stimulating hormone
GO:0017045 GO:0005102 FB D adrenocorticotropin-releasing hormone
GO:0017046 GO:0005515 FB D polypeptide hormone binding
GO:0017047 GO:0005515 FB D adrenocorticotropin-releasing hormone binding
GO:0017048 GO:0005515 FB D RHO binding
GO:0017049 GO:0005515 FB D GTP-RHO binding
GO:0017050 GO:0003824 FB D D-erythro-sphingosine kinase
GO:0017051 GO:0003824 FB D retinol dehydratase
GO:0017056 GO:0005198 FB D structural protein of nuclear pore
GO:0017057 GO:0003824 FB D 6-phosphogluconolactonase
GO:0017058 GO:0005515 FB D FH1-domain binding
GO:0017060 GO:0003824 FB D galactoside 3(4)-L-fucosyltransferase
GO:0017061 GO:0003824 FB D 5'-methylthioadenosine phosphorylase
GO:0017063 GO:0003824 FB D phosphatidylserine-specific phospholipase A1
GO:0017064 GO:0003824 FB D fatty acid amide hydrolase
GO:0017065 GO:0003685 FB D single-strand selective monofunctional uracil-DNA glycosylase
GO:0003824
GO:0017066 GO:0003824 FB D cholesterol O-acyltransferase
GO:0017067 GO:0003824 FB D tyrosine-ester sulfotransferase
GO:0017068 GO:0003824 FB D glutamyl-tRNA(Gln) amidotransferase
GO:0017069 GO:0003723 FB D snRNA binding
GO:0017070 GO:0003723 FB D U6 snRNA binding
GO:0017072 GO:0003754 FB D tubulin folding
GO:0017074 GO:0008233 FB D procollagen N-endopeptidase
GO:0017075 GO:0005515 FB D syntaxin-1 binding
GO:0017076 GO:0000166 FB D purine nucleotide binding
GO:0017077 GO:0008135 FB D oxidative phosphorylation uncoupler
GO:0017078 GO:0003754 FB D HSC70-interacting
Term name changes in function ontology
GO:0004161: dimethylallyltranstransferase --> dimethylallyltransferase
GO:0005039: death receptor associated factor --> death receptor-associated factor
GO:0005200: cytoskeletal structural protein --> structural protein of cytoskeleton
GO:0005240: glycine receptor associated protein --> glycine receptor-associated protein
GO:0016722: oxidoreductase, oxidising metal ions --> oxidoreductase, oxidizing metal ions
GO:0016723: oxidoreductase, oxidising metal ions, NAD or NADP as acceptor --> oxidoreductase, oxidizing metal ions, NAD or NADP as acceptor
GO:0016724: oxidoreductase, oxidising metal ions, oxygen as acceptor --> oxidoreductase, oxidizing metal ions, oxygen as acceptor
GO:0016962: receptor associated protein --> receptor-associated protein
GO:0016963: alpha-2 macroglobulin receptor associated protein --> alpha-2 macroglobulin receptor-associated protein
New definitions for function ontology terms (5 new definitions)
GO:0004199, caspase
GO:0004201, caspase-1
GO:0004208, caspase-3
GO:0008189, apoptosis inhibitor
GO:0016506, apoptosis activator
New term merges in function ontology
GO:0004480 has been merged into GO:0008168, methyltransferase
Term movements in function ontology:
Terms movements under GO Slim term 'motor ; GO:0003774'
+ GO:0008569, minus-end-directed kinesin ATPase
+ GO:0008574, plus-end-directed kinesin ATPase
Terms movements under GO Slim term 'enzyme ; GO:0003824'
+ GO:0016537, cyclin-dependent protein kinase catalyst
+ GO:0016538, cyclin-dependent protein kinase regulator
Terms movements under GO Slim term 'signal transducer ; GO:0004871'
+ GO:0005039, death receptor-associated factor
Terms movements under GO Slim term 'structural protein ; GO:0005198'
- GO:0003712, transcription co-factor
- GO:0003713, transcription co-activator
- GO:0003714, transcription co-repressor
- GO:0003719, transcription factor, cytoplasmic sequestering
- GO:0008134, transcription factor binding
- GO:0008140, cAMP response element binding protein binding
Terms movements under GO Slim term 'protein binding ; GO:0005515'
+ GO:0003712, transcription co-factor
+ GO:0003713, transcription co-activator
+ GO:0003714, transcription co-repressor
+ GO:0003719, transcription factor, cytoplasmic sequestering
+ GO:0008134, transcription factor binding
+ GO:0008569, minus-end-directed kinesin ATPase
+ GO:0008574, plus-end-directed kinesin ATPase
Terms movements under GO Slim term 'antioxidant ; GO:0016209'
- GO:0008189, apoptosis inhibitor
- GO:0016505, apoptotic protease activator
- GO:0016506, apoptosis activator
Terms movements under GO Slim term 'apoptosis regulator ; GO:0016329'
+ GO:0008189, apoptosis inhibitor
+ GO:0016505, apoptotic protease activator
+ GO:0016506, apoptosis activator
New terms in process ontology (53 new terms)
GO:0002009 GO:0007275 MGI D morphogenesis of an epithelium
GO:0002011 GO:0007275 MGI D morphogenesis of an epithelial sheet
GO:0009680 GO:0009607 TAIR D response to non-pathogenic bacteria
GO:0009681 GO:0006950 TAIR D perception of non-pathogenic bacteria
GO:0008150
GO:0009605
GO:0009607
GO:0009682 GO:0009607 TAIR D induced systemic resistance
GO:0009683 GO:0006519 TAIR D indole acetic acid metabolism
GO:0009684 GO:0006519 TAIR D indole acetic acid biosynthesis
GO:0009058
GO:0009685 GO:0006629 TAIR D gibberellic acid metabolism
GO:0009686 GO:0006629 TAIR D gibberellic acid biosynthesis
GO:0009058
GO:0009687 GO:0006629 TAIR D abscisic acid metabolism
GO:0009688 GO:0006629 TAIR D abscisic acid biosynthesis
GO:0009058
GO:0009690 GO:0008152 TAIR D cytokinin metabolism
GO:0009056
GO:0009691 GO:0008152 TAIR D cytokinin biosynthesis
GO:0009056
GO:0009058
GO:0009692 GO:0006519 TAIR D ethylene metabolism
GO:0009693 GO:0006519 TAIR D ethylene biosynthesis
GO:0009058
GO:0009694 GO:0006629 TAIR D jasmonic acid metabolism
GO:0009695 GO:0006629 TAIR D jasmonic acid biosynthesis
GO:0009058
GO:0009696 GO:0008152 TAIR D salicylic acid metabolism
GO:0009697 GO:0009058 TAIR D salicylic acid biosynthesis
GO:0016322 GO:0007275 FB D neuronal remodeling
GO:0016325 GO:0007010 FB D organization of the oocyte microtubule cytoskeleton
GO:0007275
GO:0016330 GO:0007049 FB D second mitotic wave
GO:0007275
GO:0016331 GO:0007275 FB D morphogenesis of embryonic epithelium
GO:0016332 GO:0007275 FB D polarity of embryonic epithelium
GO:0016333 GO:0007275 FB D morphogenesis of follicular epithelium
GO:0016334 GO:0007275 FB D polarity of follicular epithelium
GO:0016335 GO:0007275 FB D morphogenesis of larval imaginal disc epithelium
GO:0016336 GO:0007275 FB D polarity of larval imaginal disc epithelium
GO:0016337 GO:0007154 FB D cell-cell adhesion
GO:0016338 GO:0007154 FB D calcium-independent cell-cell adhesion
GO:0016339 GO:0007154 FB D calcium-dependent cell-cell adhesion
GO:0016340 GO:0007154 FB D calcium-dependent cell-matrix adhesion
GO:0016344 GO:0007049 FB D meiotic chromosome movement
GO:0016345 GO:0007049 FB D female meiotic chromosome movement
GO:0016346 GO:0007049 FB D male meiotic chromosome movement
GO:0016998 GO:0016043 FB D cell wall degradation
GO:0016999 GO:0008152 FB D antibiotic metabolism
GO:0017000 GO:0008152 FB D antibiotic biosynthesis
GO:0009058
GO:0017001 GO:0008152 FB D antibiotic catabolism
GO:0009056
GO:0017003 GO:0006464 FB D protein-heme linkage
GO:0008152
GO:0017004 GO:0008152 FB D cytochrome biogenesis
GO:0017006 GO:0006464 FB D protein-tetrapyrrole linkage
GO:0017007 GO:0006464 FB D protein-bilin linkage
GO:0017008 GO:0006464 FB D protein-phycobiliviolin linkage
GO:0017009 GO:0006464 FB D protein-phycocyanobilin linkage
GO:0017010 GO:0006464 FB D protein-phycourobilin linkage
GO:0017011 GO:0006464 FB D protein-phycoerythrobilin linkage
GO:0017012 GO:0006464 FB D protein-phytochromobilin linkage
GO:0017013 GO:0006464 FB D protein flavinylation
GO:0017014 GO:0006464 FB D protein nitrosylation
GO:0017015 GO:0007165 FB D regulation of TGFbeta receptor signaling pathway
GO:0008150
GO:0009605
GO:0009628
GO:0017055 GO:0006350 FB D inhibition of transcriptional pre-initiation complex formation
GO:0017062 GO:0008152 FB D cytochrome bc(1) complex biogenesis
Term name changes in process ontology
GO:0007160: cell-cell matrix adhesion --> cell-matrix adhesion
GO:0007161: calcium-independent cell-cell matrix adhesion --> calcium-independent cell-matrix adhesion
GO:0016255: attachement of GPI anchor to protein --> attachment of GPI anchor to protein
New definitions for process ontology terms (21 new definitions)
GO:0000050, urea cycle
GO:0006309, DNA fragmentation
GO:0006915, apoptosis
GO:0006916, anti-apoptosis
GO:0006917, induction of apoptosis
GO:0006919, caspase activation
GO:0006921, disassembly of cell structures
GO:0006922, cleavage of lamin
GO:0006923, cleavage of cytoskeletal proteins
GO:0007016, cytoskeletal anchoring
GO:0007155, cell adhesion
GO:0007156, homophilic cell adhesion
GO:0007157, heterophilic cell adhesion
GO:0007160, cell-matrix adhesion
GO:0007161, calcium-independent cell-matrix adhesion
GO:0008624, induction of apoptosis by extracellular signals
GO:0008629, induction of apoptosis by intracellular signals
GO:0008632, apoptotic program
GO:0008633, induction of proapoptotic gene products
GO:0008634, repression of survival gene products
GO:0008637, apoptotic mitochondrial changes
Term movements in process ontology:
Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010'
+ GO:0008103, polarization of the oocyte microtubule cytoskeleton
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
none
Statistics:
Component: 732 terms, 30.9% defined (226 terms defined)
Function: 3943 terms, 8.1% defined (321 terms defined)
Process: 2936 terms, 12.5% defined (368 terms defined)
Total: 7611 terms, 12.0% defined (915 terms defined)
Term errors
none