GO Monthly Release Notes for January 2001
========================
Generated on Mon Oct 27 12:26:01 2003
Files used:
component old: 1.113 new: 1.130
function old: 1.208 new: 1.249
process old: 1.185 new: 1.215
definitions old: 1.91 new: 1.112
GO Slim: Generic.0208
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in component ontology (15 new terms)
GO:0001520 GO:0005929 MGI D outer dense fiber
GO:0001527 GO:0005578 MGI D microfibrils
GO:0001529 GO:0005578 MGI D elastin
GO:0016222 GO:0005941 FB D procollagen-proline,2-oxoglutarate-4-dioxygenase
GO:0016234 GO:0005737 FB D inclusion body
GO:0016235 GO:0005737 FB D aggresome
GO:0016272 GO:0005829 FB D prefoldin
GO:0016281 GO:0005737 FB D eukaryotic translation initiation factor 4F complex
GO:0016282 GO:0005737 FB D eukaryotic 43S pre-initiation complex
GO:0016283 GO:0005737 FB D eukaryotic 48S initiation complex
GO:0016442 GO:0005941 FB D RNA-induced silencing complex
GO:0016456 GO:0005634 FB D dosage compensation complex
GO:0016459 GO:0005856 FB D myosin
GO:0016460 GO:0005856 FB D myosin II
GO:0016461 GO:0005856 FB D unconventional myosin
New obsoletions in component ontology
GO:0008304, eukaryotic translation initiation factor 4 complex: No reason given.
Term name changes in component ontology
GO:0000222: plasma membrane hydrogen-transporting ATPase V0 domain --> lysosomal membrane hydrogen-transporting ATPase V0 domain
GO:0000223: plasma membrane hydrogen-transporting ATPase V1 domain --> lysosomal membrane hydrogen-transporting ATPase V1 domain
GO:0005679: nucleosome remodelling complex --> nucleosome remodeling complex
GO:0005951: carbamoyl-phosphate synthase (glutamine-hydrolysing) --> carbamoyl-phosphate synthase (glutamine-hydrolyzing)
GO:0008245: plasma membrane hydrogen-transporting ATPase --> lysosomal membrane hydrogen-transporting ATPase
GO:0008250: oligosaccharyl transferase --> oligosaccharyl transferase complex
GO:0009330: DNA topoisomerase (ATP-hydrolysing) --> DNA topoisomerase (ATP-hydrolyzing)
GO:0016027: InaD signalling complex --> InaD signaling complex
New definitions for component ontology terms (7 new definitions)
GO:0000119, mediator complex
GO:0005659, delta DNA polymerase
GO:0005776, autophagic vacuole
GO:0005922, connexon
GO:0008021, synaptic vesicle
GO:0008250, oligosaccharyl transferase complex
GO:0016035, zeta DNA polymerase
Term movements in component ontology:
Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
+ GO:0005843, cytosolic small ribosomal (40S)-subunit
- GO:0008304, eukaryotic translation initiation factor 4 complex
Terms movements under GO Slim term 'lysosome ; GO:0005764'
+ GO:0000222, lysosomal membrane hydrogen-transporting ATPase V0 domain
+ GO:0000223, lysosomal membrane hydrogen-transporting ATPase V1 domain
+ GO:0008245, lysosomal membrane hydrogen-transporting ATPase
Terms movements under GO Slim term 'endoplasmic reticulum ; GO:0005783'
+ GO:0008250, oligosaccharyl transferase complex
Terms movements under GO Slim term 'plasma membrane ; GO:0005886'
- GO:0000222, lysosomal membrane hydrogen-transporting ATPase V0 domain
- GO:0000223, lysosomal membrane hydrogen-transporting ATPase V1 domain
- GO:0008245, lysosomal membrane hydrogen-transporting ATPase
- GO:0008250, oligosaccharyl transferase complex
New terms in function ontology (126 new terms)
GO:0001511 GO:0005198 MGI D fibrillin
GO:0001512 GO:0003824 MGI D NRH (di hydronicotimaminde) quinone reductase
GO:0001513 GO:0003824 MGI D glutamate phosphate reductase
GO:0001515 GO:0005102 MGI D opioid peptide
GO:0001517 GO:0003824 MGI D N-acetylglucosamine-6-O-sulfotransferase
GO:0001521 GO:0005102 MGI D fibroblast growth factor
GO:0001524 GO:0005215 MGI D globin
GO:0001528 GO:0005198 MGI D elastin
GO:0009669 GO:0005215 TAIR D sucrose permease
GO:0009670 GO:0005215 TAIR D triose-phosphate transporter
GO:0009671 GO:0005215 TAIR D nitrate(chlorate):hydrogen symporter
GO:0009672 GO:0005215 TAIR D auxin:hydrogen symporter
GO:0009673 GO:0005215 TAIR D low affinity phosphate transporter
GO:0009674 GO:0005215 TAIR D potassium:sodium symporter
GO:0009675 GO:0005215 TAIR D high affinity sulfate:hydrogen symporter
GO:0009676 GO:0005215 TAIR D low affinity sulfate:hydrogen symporter
GO:0009678 GO:0005215 TAIR D hydrogen-translocating pyrophosphatase
GO:0009679 GO:0005215 TAIR D hexose:hydrogen symporter
GO:0016205 GO:0003824 FB D selenocysteine methyltransferase
GO:0016206 GO:0003824 FB D catechol O-methyltransferase
GO:0016207 GO:0003824 FB D 4-coumarate--CoA ligase
GO:0016208 GO:0000166 FB D AMP binding
GO:0016209 GO:0016209 FB D antioxidant
GO:0016210 GO:0003824 FB D naringenin-chalcone synthase
GO:0016211 GO:0003824 FB D ammonia ligase
GO:0016212 GO:0003824 FB D kynurenine--oxoglutarate aminotransferase
GO:0016213 GO:0003824 FB D linoleoyl-CoA desaturase
GO:0016215 GO:0003824 FB D CoA desaturase
GO:0016216 GO:0003824 FB D isopenicillin N synthetase
GO:0016217 GO:0003824 FB D N-ethylammeline chlorohydrolase
GO:0016218 GO:0003824 FB D polyketide synthase
GO:0016219 GO:0004871 FB D GDP-dissociation stimulator
GO:0016220 GO:0004871 FB D RAL GDP-dissociation stimulator
GO:0016223 GO:0003824 FB D beta-alanine--pyruvate aminotransferase
GO:0016224 GO:0003824 FB D non-selenium glutathione peroxidase
GO:0016225 GO:0003824 FB D cysteine desulfurase
GO:0016227 GO:0003824 FB D tRNA sulfurtransferase
GO:0016228 GO:0003824 FB D aldolase
GO:0016229 GO:0003824 FB D steroid dehydrogenase
GO:0016230 GO:0003824 FB D sphingomyelin phosphodiesterase activator
GO:0016231 GO:0003824 FB D beta-N-acetylglucosaminidase
GO:0016232 GO:0003824 FB D HNK-1 sulfotransferase
GO:0016247 GO:0005215 FB D channel regulator
GO:0016248 GO:0005215 FB D channel inhibitor
GO:0016249 GO:0005215 FB D channel localizer
GO:0016250 GO:0003824 FB D N-sulfoglucosamine sulfohydrolase
GO:0016251 GO:0003700 FB D general RNA polymerase II transcription factor
GO:0016252 GO:0003700 FB D non-specific RNA polymerase II transcription factor
GO:0016253 GO:0003824 FB D UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
GO:0016262 GO:0003824 FB D protein N-acetylglucosaminyltransferase
GO:0016263 GO:0003824 FB D glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase
GO:0016273 GO:0003824 FB D arginine N-methyltransferase
GO:0016274 GO:0003824 FB D protein-arginine N-methyltransferase
GO:0016275 GO:0003824 FB D [cytochrome-c]-arginine N-methyltransferase
GO:0016277 GO:0003824 FB D [myelin basic protein]-arginine N-methyltransferase
GO:0016278 GO:0003824 FB D lysine N-methyltransferase
GO:0016279 GO:0003824 FB D protein-lysine N-methyltransferase
GO:0016284 GO:0008233 FB D alanine aminopeptidase
GO:0016285 GO:0008233 FB D cytosol alanyl aminopeptidase
GO:0016286 GO:0005215 FB D small conductance calcium-activated potassium channel
GO:0016287 GO:0003824 FB D glycerone-phosphate O-acyltransferase
GO:0016289 GO:0003824 FB D CoA hydrolase
GO:0016290 GO:0003824 FB D palmitoyl-CoA hydrolase
GO:0016291 GO:0003824 FB D acyl-CoA thioesterase
GO:0016292 GO:0003824 FB D acyl-CoA thioesterase I
GO:0016293 GO:0003824 FB D long-chain fatty-acyl-CoA hydrolase
GO:0016294 GO:0003824 FB D lauroyl-[acyl-carrier protein] hydrolase
GO:0016295 GO:0003824 FB D myristoyl-[acyl-carrier protein] hydrolase
GO:0016296 GO:0003824 FB D palmitoyl-[acyl-carrier protein] hydrolase
GO:0016297 GO:0003824 FB D [acyl-carrier protein] hydrolase
GO:0016298 GO:0003824 FB D lipase
GO:0016299 GO:0004871 FB D regulator of G-protein signaling
GO:0016300 GO:0003824 FB D tRNA (uracil) methyltransferase
GO:0016301 GO:0003824 FB D kinase
GO:0016302 GO:0003824 FB D phosphatase
GO:0016400 GO:0003824 FB D dopa decarboxylase
GO:0016401 GO:0003824 FB D palmitoyl-CoA oxidase
GO:0016402 GO:0003824 FB D pristanoyl-CoA oxidase
GO:0016403 GO:0003824 FB D dimethylargininase
GO:0016404 GO:0003824 FB D 15-hydroxyprostaglandin dehydrogenase (NAD+)
GO:0016405 GO:0003824 FB D CoA-ligase
GO:0016406 GO:0003824 FB D carnitine O-acyltransferase
GO:0016407 GO:0003824 FB D acetyltransferase
GO:0016408 GO:0003824 FB D C-acyltransferase
GO:0016409 GO:0003824 FB D palmitoyltransferase
GO:0016410 GO:0003824 FB D N-acyltransferase
GO:0016411 GO:0003824 FB D acylglycerol O-acyltransferase
GO:0016412 GO:0003824 FB D serine O-acyltransferase
GO:0016413 GO:0003824 FB D O-acetyltransferase
GO:0016414 GO:0003824 FB D O-octanoyltransferase
GO:0016415 GO:0003824 FB D octanoyltransferase
GO:0016416 GO:0003824 FB D O-palmitoyltransferase
GO:0016417 GO:0003824 FB D S-acyltransferase
GO:0016418 GO:0003824 FB D S-acetyltransferase
GO:0016419 GO:0003824 FB D S-malonyltransferase
GO:0016420 GO:0003824 FB D malonyltransferase
GO:0016421 GO:0003824 FB D CoA carboxylase
GO:0016422 GO:0003824 FB D mRNA (2'-O-methyladenosine-N6-)-methyltransferase
GO:0016423 GO:0003824 FB D tRNA (guanine) methyltransferase
GO:0016424 GO:0003824 FB D tRNA (guanosine) methyltransferase
GO:0016425 GO:0003824 FB D tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
GO:0016426 GO:0003824 FB D tRNA (adenine)-methyltransferase
GO:0016427 GO:0003824 FB D tRNA (cytosine)-methyltransferase
GO:0016428 GO:0003824 FB D tRNA (cytosine-5-)-methyltransferase
GO:0016429 GO:0003824 FB D tRNA (adenine-N1-)-methyltransferase
GO:0016430 GO:0003824 FB D tRNA (adenine-N6-)-methyltransferase
GO:0016431 GO:0003824 FB D tRNA (uridine) methyltransferase
GO:0016432 GO:0003824 FB D tRNA-uridine aminocarboxypropyltransferase
GO:0016433 GO:0003824 FB D rRNA (adenine) methyltransferase
GO:0016434 GO:0003824 FB D rRNA (cytosine) methyltransferase
GO:0016435 GO:0003824 FB D rRNA (guanine) methyltransferase
GO:0016436 GO:0003824 FB D rRNA (uridine) methyltransferase
GO:0016437 GO:0003824 FB D tRNA cytidylyltransferase
GO:0016438 GO:0003824 FB D tRNA-queuosine beta-mannosyltransferase
GO:0016439 GO:0003824 FB D tRNA-pseudouridine synthase I
GO:0016443 GO:0004518 FB D bidentate ribonuclease III
GO:0016448 GO:0003824 FB D mu DNA polymerase
GO:0016449 GO:0003824 FB D lambda DNA polymerase
GO:0016450 GO:0003824 FB D kappa DNA polymerase
GO:0016451 GO:0003824 FB D nu DNA polymerase
GO:0016452 GO:0003824 FB D theta DNA polymerase
GO:0016453 GO:0003824 FB D C-acetyltransferase
GO:0016454 GO:0003824 FB D C-palmitoyltransferase
GO:0016455 GO:0003700 FB D RNA polymerase II transcription mediator
GO:0016462 GO:0003824 FB D pyrophosphatase
GO:0016463 GO:0005215 FB D zinc-exporting ATPase
New obsoletions in function ontology
GO:0003703, general RNA polymerase II transcription factor: No reason given.
GO:0009023, tRNA sulfurtransferase: No reason given.
Term name changes in function ontology
GO:0003787: actin depolymerising --> actin depolymerizing
GO:0004095: carnitine O-palmityltransferase --> carnitine O-palmitoyltransferase
GO:0004117: CaM-dependent cyclic-nucleotide phosphodiesterase --> calmodulin-dependent cyclic-nucleotide phosphodiesterase
GO:0004160: dihyroxy-acid dehydratase --> dihydroxy-acid dehydratase
GO:0004200: signalling (initiator) caspase --> signaling (initiator) caspase
GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) --> glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
GO:0004393: heparin N-deactylase/N-sulfotransferase --> heparin N-deacetylase/N-sulfotransferase
GO:0004483: mRNA (nucleoside-2'-O)-methyltransferase --> mRNA (nucleoside-2'-O-)-methyltransferase
GO:0004701: diacylglycerol-activated/phosholipid dependent protein kinase C --> diacylglycerol-activated/phospholipid dependent protein kinase C
GO:0004702: receptor signalling protein serine/threonine kinase --> receptor signaling protein serine/threonine kinase
GO:0004703: G-protein linked receptor kinase --> G-protein coupled receptor kinase
GO:0004716: receptor signalling protein tyrosine kinase --> receptor signaling protein tyrosine kinase
GO:0004728: receptor signalling protein tyrosine phosphatase --> receptor signaling protein tyrosine phosphatase
GO:0004768: stearoyl-CoA 9-desaturase --> stearoyl-CoA desaturase
GO:0004863: diacylglycerol-activated/phosholipid dependent protein kinase C inhibitor --> diacylglycerol-activated/phospholipid dependent protein kinase C inhibitor
GO:0004871: signal transduction --> signal transducer
GO:0004883: glucocortocoid receptor --> glucocorticoid receptor
GO:0004926: non-G-protein linked 7TM receptor --> non-G-protein coupled 7TM receptor
GO:0004930: G-protein linked receptor --> G-protein coupled receptor
GO:0004955: prostoglandin receptor --> prostaglandin receptor
GO:0004956: prostoglandin D receptor --> prostaglandin D receptor
GO:0004957: prostoglandin E receptor --> prostaglandin E receptor
GO:0004958: prostoglandin F receptor --> prostaglandin F receptor
GO:0004959: prostoglandin I receptor --> prostaglandin I receptor
GO:0004970: ionotrophic glutamate receptor --> ionotropic glutamate receptor
GO:0005057: receptor signalling protein --> receptor signaling protein
GO:0005066: transmembrane receptor protein tyrosine kinase signalling protein --> transmembrane receptor protein tyrosine kinase signaling protein
GO:0005071: transmembrane receptor protein serine/threonine kinase signalling protein --> transmembrane receptor protein serine/threonine kinase signaling protein
GO:0005076: receptor signalling protein serine/threonine kinase signalling protein --> receptor signaling protein serine/threonine kinase signaling protein
GO:0005081: receptor signalling protein serine/threonine phosphatase signalling protein --> receptor signaling protein serine/threonine phosphatase signaling protein
GO:0005548: phosopholipid transporter --> phospholipid transporter
GO:0008268: receptor signalling protein tyrosine kinase signalling protein --> receptor signaling protein tyrosine kinase signaling protein
GO:0008353: CTD kinase --> [RNA-polymerase]-subunit kinase
GO:0008651: actin polymerising --> actin polymerizing
GO:0008958: phoshpantetheinyltransferase --> phosphopantetheinyltransferase
GO:0009400: receptor signalling protein serine/threonine phosphatase --> receptor signaling protein serine/threonine phosphatase
GO:0015132: prostoglandin transporter --> prostaglandin transporter
GO:0015348: prostoglandin/thromboxane transporter --> prostaglandin/thromboxane transporter
GO:0015458: low voltage-dependent potassium channel auxillary protein --> low voltage-dependent potassium channel auxiliary protein
GO:0015570: energiser of outer membrane receptor-mediated transport --> energizer of outer membrane receptor-mediated transport
GO:0015651: quarternary ammonium group transporter --> quaternary ammonium group transporter
GO:0015652: quarternary ammonium group:hydrogen symporter --> quaternary ammonium group:hydrogen symporter
GO:0015660: formate efflex permease --> formate efflux permease
New definitions for function ontology terms (34 new definitions)
GO:0003704, specific RNA polymerase II transcription factor
GO:0003887, DNA-directed DNA polymerase
GO:0003889, alpha DNA polymerase
GO:0003891, delta DNA polymerase
GO:0003892, proliferating cell nuclear antigen
GO:0003895, gamma DNA-directed DNA polymerase
GO:0003896, DNA primase
GO:0003936, hydrogen-transporting two-sector ATPase
GO:0004008, copper-exporting ATPase
GO:0004012, magnesium-ATPase
GO:0004050, apyrase
GO:0004122, cystathione beta-synthase
GO:0004432, 1-phosphatidylinositol-4-phosphate kinase, class I<sub>A</sub>
GO:0004433, 1-phosphatidylinositol-4-phosphate kinase, class I<sub>B</sub>
GO:0004653, polypeptide N-acetylgalactosaminyltransferase
GO:0005388, calcium-transporting ATPase
GO:0005391, sodium/potassium-exchanging ATPase
GO:0008547, protein-synthesizing GTPase
GO:0008548, signal-recognition-particle GTPase
GO:0008549, dynamin GTPase
GO:0008550, tubulin GTPase
GO:0008551, cadmium-exporting ATPase
GO:0008553, hydrogen-exporting ATPase
GO:0008554, sodium-exporting ATPase
GO:0008555, chloride-transporting ATPase
GO:0008556, potassium-transporting ATPase
GO:0008557, aminophospholipid-transporting ATPase
GO:0008900, hydrogen/potassium-exchanging ATPase
GO:0015407, monosaccharide-transporting ATPase
GO:0015422, oligosaccharide-transporting ATPase
GO:0015443, sodium-transporting two-sector ATPase
GO:0015444, magnesium-importing ATPase
GO:0015446, arsenite-transporting ATPase
GO:0016000, iota DNA polymerase
New term merges in function ontology
GO:0004606 has been merged into GO:0008195, phosphatidate phosphatase
Term movements in function ontology:
Terms movements under GO Slim term 'transcription factor ; GO:0003700'
- GO:0003703, general RNA polymerase II transcription factor
Terms movements under GO Slim term 'enzyme ; GO:0003824'
- GO:0009023, tRNA sulfurtransferase
Terms movements under GO Slim term 'protein tagging ; GO:0008638'
- GO:0008181, tumor suppressor
- GO:0008435, anticoagulant
- GO:0016172, antifreeze
- GO:0016173, ice nucleation inhibitor
Terms movements under GO Slim term 'antioxidant ; GO:0016209'
+ GO:0008181, tumor suppressor
+ GO:0008435, anticoagulant
+ GO:0016172, antifreeze
+ GO:0016173, ice nucleation inhibitor
New terms in process ontology (55 new terms)
GO:0000278 GO:0007049 SGD D mitotic cell cycle
GO:0000279 GO:0007049 SGD D M phase
GO:0000280 GO:0007049 SGD D nuclear division
GO:0000281 GO:0007049 SGD D cytokinesis after mitosis
GO:0000282 GO:0007010 SGD D bud site selection
GO:0008151
GO:0000283 GO:0007010 SGD D establishment of cell polarity (sensu Saccharomyces)
GO:0000284 GO:0007010 SGD D shmoo orientation
GO:0007275
GO:0001510 GO:0008152 MGI D RNA methylation
GO:0001514 GO:0006412 MGI D selenocysteine incorporation
GO:0001516 GO:0006629 MGI D prostaglandin synthesis
GO:0001519 GO:0008152 MGI D peptide amidation
GO:0001522 GO:0008152 MGI D pseudouridine synthesis
GO:0001523 GO:0006731 MGI D retinoid metabolism
GO:0001525 GO:0007275 MGI D angiogenesis
GO:0001526 GO:0005975 MGI D proteoglycan sulfate transfer
GO:0008152
GO:0009407 GO:0008152 FB D toxin catabolism
GO:0016226 GO:0006731 FB D iron-sulfur cluster assembly
GO:0016233 GO:0006996 FB D telomere capping
GO:0016236 GO:0008151 FB D macroautophagy
GO:0016237 GO:0008151 FB D microautophagy
GO:0016238 GO:0008151 FB D chaperone-mediated autophagy
GO:0016239 GO:0008151 FB D induction of macroautophagy
GO:0016240 GO:0008151 FB D autophagic vacuole docking
GO:0016241 GO:0008151 FB D regulation of macroautophagy
GO:0016242 GO:0008151 FB D inhibition of macroautophagy
GO:0016243 GO:0008151 FB D regulation of autophagic vacuole size
GO:0016244 GO:0008219 FB D non-apoptotic cell death
GO:0016245 GO:0006350 FB D hyperphosphorylation of RNA polymerase II
GO:0016246 GO:0009607 FB D RNA interference
GO:0016254 GO:0006464 FB D preassembly of GPI anchor in ER membrane
GO:0016255 GO:0006464 FB D attachement of GPI anchor to protein
GO:0016256 GO:0006464 FB D N-glycan processing to lysosome
GO:0016257 GO:0006464 FB D N-glycan processing to secreted and cell-surface N-glycans
GO:0016258 GO:0006464 FB D N-glycan diversification
GO:0016259 GO:0006519 FB D selenocysteine metabolism
GO:0016260 GO:0006519 FB D selenocysteine biosynthesis
GO:0016261 GO:0006519 FB D selenocysteine catabolism
GO:0016264 GO:0007028 FB D gap junction assembly
GO:0016265 GO:0016265 FB D death
GO:0016266 GO:0006464 FB D O-glycan processing
GO:0016267 GO:0006464 FB D O-glycan processing, core 1
GO:0016268 GO:0006464 FB D O-glycan processing, core 2
GO:0016269 GO:0006464 FB D O-glycan processing, core 3
GO:0016270 GO:0006464 FB D O-glycan processing, core 4
GO:0016271 GO:0016265 FB D tissue death
GO:0016280 GO:0016265 FB D senescence
GO:0016288 GO:0007049 FB D cytokinesis
GO:0016440 GO:0009607 FB D transcriptional gene silencing
GO:0016441 GO:0009607 FB D post-transcriptional gene silencing
GO:0016444 GO:0006259 FB D somatic cell DNA recombination
GO:0016445 GO:0006259 FB D generation of antibody gene diversity
GO:0016446 GO:0006259 FB D somatic hypermutation of antibody genes
GO:0016447 GO:0006259 FB D somatic recombination of antibody genes
GO:0016457 GO:0007275 FB D dosage compensation complex assembly
GO:0016458 GO:0009607 FB D gene silencing
New obsoletions in process ontology
GO:0007104, cytokinesis: No reason given.
GO:0007115, bud site selection/establishment of cell polarity (sensu Saccharomyces): No reason given.
Term name changes in process ontology
GO:0000045: autophagosome formation --> autophagic vacuole formation
GO:0000046: fusion of autophagosome with lysosome --> autophagic vacuole fusion
GO:0000080: mitotic G1 phase --> G1 phase of mitotic cell cycle
GO:0000082: mitotic G1/S transition --> G1/S transition of mitotic cell cycle
GO:0000083: mitotic G1/S-specific transcription --> G1/S-specific transcription in mitotic cell cycle
GO:0000084: mitotic S phase --> S phase of mitotic cell cycle
GO:0000085: mitotic G2 phase --> G2 phase of mitotic cell cycle
GO:0000086: mitotic G2/M transition --> G2/M transition of mitotic cell cycle
GO:0000087: M phase --> M phase of mitotic cell cycle
GO:0000114: mitotic G1-specific transcription --> G1-specific transcription in mitotic cell cycle
GO:0000115: mitotic S-specific transcription --> S-specific transcription in mitotic cell cycle
GO:0000116: mitotic G2-specific transcription --> G2-specific transcription in mitotic cell cycle
GO:0000117: mitotic G2/M-specific transcription --> G2/M-specific transcription in mitotic cell cycle
GO:0000216: mitotic M/G1 transition --> M/G1 transition of mitotic cell cycle
GO:0006338: chromatin modelling --> chromatin modeling
GO:0006419: alanyl-tRNA biosynthesis --> alanyl-tRNA aminoacylation
GO:0006420: arginyl-tRNA biosynthesis --> arginyl-tRNA aminoacylation
GO:0006421: asparaginyl-tRNA biosynthesis --> asparaginyl-tRNA aminoacylation
GO:0006422: aspartyl-tRNA biosynthesis --> aspartyl-tRNA aminoacylation
GO:0006423: cysteinyl-tRNA biosynthesis --> cysteinyl-tRNA aminoacylation
GO:0006424: glutamyl-tRNA biosynthesis --> glutamyl-tRNA aminoacylation
GO:0006425: glutaminyl-tRNA biosynthesis --> glutaminyl-tRNA aminoacylation
GO:0006426: glycyl-tRNA biosynthesis --> glycyl-tRNA aminoacylation
GO:0006427: histidyl-tRNA biosynthesis --> histidyl-tRNA aminoacylation
GO:0006428: isoleucyl-tRNA biosynthesis --> isoleucyl-tRNA aminoacylation
GO:0006429: leucyl-tRNA biosynthesis --> leucyl-tRNA aminoacylation
GO:0006430: lysyl-tRNA biosynthesis --> lysyl-tRNA aminoacylation
GO:0006431: methionyl-tRNA biosynthesis --> methionyl-tRNA aminoacylation
GO:0006432: phenylalanyl-tRNA biosynthesis --> phenylalanyl-tRNA aminoacylation
GO:0006433: prolyl-tRNA biosynthesis --> prolyl-tRNA aminoacylation
GO:0006434: seryl-tRNA biosynthesis --> seryl-tRNA aminoacylation
GO:0006435: threonyl-tRNA biosynthesis --> threonyl-tRNA aminoacylation
GO:0006436: tryptophanyl-tRNA biosynthesis --> tryptophanyl-tRNA aminoacylation
GO:0006437: tyrosyl-tRNA biosynthesis --> tyrosyl-tRNA aminoacylation
GO:0006438: valyl-tRNA biosynthesis --> valyl-tRNA aminoacylation
GO:0006506: GPI anchor formation --> GPI anchor synthesis
GO:0006588: tryptophan hydoxylase activation --> tryptophan hydroxylase activation
GO:0006781: succinyl-CaA pathway --> succinyl-CoA pathway
GO:0006920: committment to apoptosis --> commitment to apoptosis
GO:0006984: ER-nuclear signalling pathway --> ER-nuclear signaling pathway
GO:0007089: mitotic start control point --> start control point of mitotic cell cycle
GO:0007090: mitotic S-phase regulation --> regulation of S phase of mitotic cell cycle
GO:0007115: bud-site selection/establishment of cell polarity (sensu Saccharomyces) --> bud site selection/establishment of cell polarity (sensu Saccharomyces)
GO:0007167: enzyme linked receptor protein signalling pathway --> enzyme linked receptor protein signaling pathway
GO:0007168: receptor guanylyl cyclase signalling pathway --> receptor guanylyl cyclase signaling pathway
GO:0007169: transmembrane receptor protein tyrosine kinase signalling pathway --> transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007173: EGF receptor signalling pathway --> EGF receptor signaling pathway
GO:0007178: transmembrane receptor protein serine/threonine kinase signalling pathway --> transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0007179: TGFbeta receptor signalling pathway --> TGFbeta receptor signaling pathway
GO:0007185: transmembrane receptor protein tyrosine phosphatase signalling pathway --> transmembrane receptor protein tyrosine phosphatase signaling pathway
GO:0007186: G-protein linked receptor protein signalling pathway --> G-protein coupled receptor protein signaling pathway
GO:0007187: G-protein signalling, linked to cyclic nucleotide second messenger --> G-protein signaling, coupled to cyclic nucleotide second messenger
GO:0007188: G-protein signalling, linked to cAMP nucleotide second messenger --> G-protein signaling, coupled to cAMP nucleotide second messenger
GO:0007189: G-protein signalling, adenylate cyclase activating pathway --> G-protein signaling, adenylate cyclase activating pathway
GO:0007193: G-protein signalling, adenylate cyclase inhibiting pathway --> G-protein signaling, adenylate cyclase inhibiting pathway
GO:0007196: metabotrophic glutamate receptor, adenylate cyclase inhibiting pathway --> metabotropic glutamate receptor, adenylate cyclase inhibiting pathway
GO:0007199: G-protein signalling, linked to cGMP nucleotide second messenger --> G-protein signaling, coupled to cGMP nucleotide second messenger
GO:0007200: G-protein signalling, linked to IP3 second messenger (phospholipase C activating) --> G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)
GO:0007204: cytostolic calcium ion concentration elevation --> cytosolic calcium ion concentration elevation
GO:0007206: metabotrophic glutamate receptor, phospholipase C activating pathway --> metabotropic glutamate receptor, phospholipase C activating pathway
GO:0007210: serotonin receptor signalling pathway --> serotonin receptor signaling pathway
GO:0007211: octopamine/tyramine signalling pathway --> octopamine/tyramine signaling pathway
GO:0007212: dopamine receptor signalling pathway --> dopamine receptor signaling pathway
GO:0007213: acetyl choline receptor signalling, muscarinic pathway --> acetyl choline receptor signaling, muscarinic pathway
GO:0007214: gamma-amino butyric acid signalling pathway --> gamma-amino butyric acid signaling pathway
GO:0007215: glutamate signalling pathway --> glutamate signaling pathway
GO:0007216: metabotrophic glutamate receptor signalling pathway --> metabotropic glutamate receptor signaling pathway
GO:0007217: tachykinin signalling pathway --> tachykinin signaling pathway
GO:0007218: neuropeptide signalling pathway --> neuropeptide signaling pathway
GO:0007219: N receptor signalling pathway --> N receptor signaling pathway
GO:0007222: frizzled receptor signalling pathway --> frizzled receptor signaling pathway
GO:0007223: frizzled-2 receptor signalling pathway --> frizzled-2 receptor signaling pathway
GO:0007224: smo receptor signalling pathway --> smo receptor signaling pathway
GO:0007229: integrin receptor signal signalling pathway --> integrin receptor signal signaling pathway
GO:0007231: osmosensory signalling pathway --> osmosensory signaling pathway
GO:0007232: osmosensory signalling pathway via Sho1 osmosensor --> osmosensory signaling pathway via Sho1 osmosensor
GO:0007234: osmosensory signalling pathway via two-component system --> osmosensory signaling pathway via two-component system
GO:0007242: intracellular signalling cascade --> intracellular signaling cascade
GO:0007267: cell-cell signalling --> cell-cell signaling
GO:0007568: ageing --> aging
GO:0007569: cell ageing --> cell aging
GO:0007574: cell ageing (sensu Saccharomyces) --> cell aging (sensu Saccharomyces)
GO:0007578: ageing dependent sterility (sensu Saccharomyces) --> aging dependent sterility (sensu Saccharomyces)
GO:0007615: anaesthesia-resistant memory --> anesthesia-resistant memory
GO:0008063: Tl receptor signalling pathway --> Tl receptor signaling pathway
GO:0008277: regulation of G-protein linked receptor protein signalling pathway --> regulation of G-protein coupled receptor protein signaling pathway
GO:0008286: insulin receptor signalling pathway --> insulin receptor signaling pathway
GO:0008293: torso receptor signalling pathway --> torso receptor signaling pathway
GO:0008314: gurken receptor signalling pathway --> gurken receptor signaling pathway
GO:0008543: FGF receptor signalling pathway --> FGF receptor signaling pathway
GO:0008589: regulation of smo receptor signalling pathway --> regulation of smo receptor signaling pathway
GO:0008590: regulation of frizzled receptor signalling pathway --> regulation of frizzled receptor signaling pathway
GO:0008591: regulation of frizzled-2 receptor signalling pathway --> regulation of frizzled-2 receptor signaling pathway
GO:0008592: regulation of Tl receptor signalling pathway --> regulation of Tl receptor signaling pathway
GO:0008593: regulation of N receptor signalling pathway --> regulation of N receptor signaling pathway
GO:0009095: aromatic amino acid family metabolism, prephenate pathway --> aromatic amino acid family biosynthesis, prephenate pathway
GO:0009096: aromatic amino acid family metabolism, anthranilate pathway --> aromatic amino acid family biosynthesis, anthranilate pathway
GO:0009269: dessication response --> desiccation response
GO:0009627: systemic aquired resistance --> systemic acquired resistance
GO:0009635: response to herbidices --> response to herbicides
GO:0015697: quarternary ammonium group transport --> quaternary ammonium group transport
GO:0015732: prostoglandin transport --> prostaglandin transport
GO:0016055: Wnt receptor signalling pathway --> Wnt receptor signaling pathway
GO:0016056: rhodopsin mediated signalling --> rhodopsin mediated signaling
GO:0016057: changes in polarisation state of photoreceptor cell membrane --> changes in polarization state of photoreceptor cell membrane
GO:0016058: maintenance of rhodopsin mediated signalling --> maintenance of rhodopsin mediated signaling
GO:0016059: deactivation of rhodopsin mediated signalling --> deactivation of rhodopsin mediated signaling
GO:0016062: adaptation of rhodopsin mediated signalling --> adaptation of rhodopsin mediated signaling
New definitions for process ontology terms (10 new definitions)
GO:0000046, autophagic vacuole fusion
GO:0006418, amino acid activation
GO:0006487, N-linked glycosylation
GO:0006491, N-glycan processing
GO:0006493, O-linked glycosylation
GO:0006505, GPI anchor metabolism
GO:0006777, molybdopterin cofactor biosynthesis
GO:0006914, autophagy
GO:0007559, histolysis
GO:0008220, necrosis
Term movements in process ontology:
Terms movements under GO Slim term 'cell cycle ; GO:0007049'
- GO:0007104, cytokinesis
+ GO:0007126, meiosis
+ GO:0007127, meiosis I
+ GO:0007135, meiosis II
Terms movements under GO Slim term 'developmental processes ; GO:0007275'
- GO:0007565, pregnancy
- GO:0007566, embryo implantation
- GO:0007567, parturition
Terms movements under GO Slim term 'physiological processes ; GO:0007582'
+ GO:0007565, pregnancy
+ GO:0007566, embryo implantation
+ GO:0007567, parturition
+ GO:0008218, bioluminescence
Terms movements under GO Slim term 'biological_process ; GO:0008150'
- GO:0008218, bioluminescence
Terms movements under GO Slim term 'cell growth and maintenance ; GO:0008151'
- GO:0007115, bud site selection/establishment of cell polarity (sensu Saccharomyces)
- GO:0007126, meiosis
- GO:0007127, meiosis I
- GO:0007135, meiosis II
- GO:0007332, shmooing
Terms movements under GO Slim term 'cell death ; GO:0008219'
- GO:0008220, necrosis
Terms movements under GO Slim term 'death ; GO:0016265'
+ GO:0007559, histolysis
+ GO:0008220, necrosis
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
none
Statistics:
Component: 677 terms, 29.5% defined (200 terms defined)
Function: 3447 terms, 6.6% defined (229 terms defined)
Process: 2761 terms, 10.4% defined (288 terms defined)
Total: 6885 terms, 10.4% defined (717 terms defined)
Term errors
GO:0000154, rRNA modification
- term lost
GO:0000237, leptotene
- term lost
GO:0000238, zygotene
- term lost
GO:0000239, pachytene
- term lost
GO:0000240, diplotene
- term lost
GO:0000241, diakinesis
- term lost
GO:0006400, tRNA modification
- term lost
GO:0007128, meiotic prophase I
- term lost
GO:0007129, synapsis
- term lost
GO:0007130, synaptonemal complex formation
- term lost
GO:0007131, meiotic recombination
- term lost
GO:0007132, meiotic metaphase I
- term lost
GO:0007133, meiotic anaphase I
- term lost
GO:0007134, meiotic telophase I
- term lost
GO:0007136, meiotic prophase II
- term lost
GO:0007137, meiotic metaphase II
- term lost
GO:0007138, meiotic anaphase II
- term lost
GO:0007139, meiotic telophase II
- term lost
GO:0007140, male meiosis
- term lost
GO:0007141, male meiosis I
- term lost
GO:0007142, male meiosis II
- term lost
GO:0007143, female meiosis
- term lost
GO:0007144, female meiosis I
- term lost
GO:0007145, recombination
- term lost
GO:0007146, recombination nodule assembly
- term lost
GO:0007147, female meiosis II
- term lost
GO:0008315, meiotic G2/MI transition
- term lost
GO:0008616, queuosine biosynthesis
- term lost