829 4 \N \N \N PMID:24981054 \N 828 4 \N \N \N PMID:25104247 \N 827 4 \N \N \N PMID:26202474 \N 826 4 \N \N \N PMID:28679362 \N 825 4 \N \N \N PMID:21176156 \N 824 4 \N \N \N PMID:25459079 \N 823 4 \N \N \N PMID:21752105 \N 822 4 \N \N \N PMID:21143916 \N 821 4 \N \N \N PMID:30081822 \N 820 4 \N \N \N PMID:23797830 \N 819 4 \N \N \N PMID:24796629 \N 818 4 \N \N \N PMID:ISU0094 \N 817 4 \N \N \N PMID:29514447 \N 816 4 \N \N \N PMID:24566961 \N 815 4 \N \N \N PMID:29076177 \N 814 4 \N \N \N PMID:25250046 \N 813 4 \N \N \N PMID:23742276 \N 812 4 \N \N \N PMID:23341976 \N 811 4 \N \N \N PMID:24879764 \N 810 4 \N \N \N PMID:23914972 \N 809 4 \N \N \N PMID:28177360 \N 808 4 \N \N \N PMID:24592976 \N 807 4 \N \N \N PMID:22205662 \N 806 4 \N \N \N PMID:26634535 \N 805 4 \N \N \N PMID:21948608 \N 804 4 \N \N \N PMID:25071839 \N 803 4 \N \N \N PMID:27625156 \N 802 4 \N \N \N PMID:26830357 \N 801 4 \N \N \N PMID:27307002 \N 800 4 \N \N \N PMID:29774581 \N 799 4 \N \N \N PMID:26846722 \N 798 4 \N \N \N PMID:27615547 \N 797 4 \N \N \N PMID:28494783 \N 796 4 \N \N \N PMID:24628300 \N 795 4 \N \N \N PMID:25887635 \N 794 4 \N \N \N PMID:23408819 \N 793 4 \N \N \N PMID:23270433 \N 792 4 \N \N \N PMID:24797309 \N 791 4 \N \N \N PMID:22976950 \N 790 4 \N \N \N PMID:28377593 \N 789 4 \N \N \N PMID:26518887 \N 788 4 \N \N \N PMID:27183999 \N 787 4 \N \N \N PMID:19397507 \N 786 4 \N \N \N PMID:22132733 \N 785 4 \N \N \N PMID:28943389 \N 784 4 \N \N \N PMID:29797367 \N 783 4 \N \N \N PMID:27317562 \N 782 4 \N \N \N PMID:26652161 \N 781 4 \N \N \N PMID:22393372 \N 780 4 \N \N \N PMID:27615062 \N 779 4 \N \N \N PMID:26020742 \N 778 4 \N \N \N PMID:21183715 \N 777 4 \N \N \N PMID:28093083 \N 776 4 \N \N \N PMID:22532790 \N 775 4 \N \N \N PMID:27023885 \N 774 4 \N \N \N PMID:25306509 \N 773 4 \N \N \N PMID:23942702 \N 772 4 \N \N \N PMID:22486507 \N 771 4 \N \N \N PMID:26439998 \N 770 4 \N \N \N PMID:26234186 \N 769 4 \N \N \N PMID:26578072 \N 768 4 \N \N \N PMID:28728355 \N 767 4 \N \N \N PMID:28696026 \N 766 4 \N \N \N PMID:24098351 \N 765 4 \N \N \N PMID:24779640 \N 764 4 \N \N \N PMID:22548415 \N 763 4 \N \N \N PMID:22745577 \N 762 4 \N \N \N PMID:27434032 \N 761 4 \N \N \N PMID:24674592 \N 760 4 \N \N \N PMID:28727040 \N 759 4 \N \N \N PMID:23747631 \N 758 4 \N \N \N PMID:27593230 \N 757 4 \N \N \N PMID:24961654 \N 756 4 \N \N \N PMID:23408821 \N 755 4 \N \N \N PMID:23691082 \N 754 4 \N \N \N PMID:29411893 \N 753 4 \N \N \N PMID:26667091 \N 752 4 \N \N \N PMID:22221021 \N 751 4 \N \N \N PMID:28050760 \N 750 4 \N \N \N PMID:25366846 \N 749 4 \N \N \N PMID:26219668 \N 748 4 \N \N \N PMID:23296815 \N 747 4 \N \N \N PMID:29971093 \N 746 4 \N \N \N PMID:25858116 \N 745 4 \N \N \N PMID:20487517 \N 744 4 \N \N \N PMID:22457712 \N 743 4 \N \N \N PMID:25137053 \N 742 4 \N \N \N PMID:22984528 \N 741 4 \N \N \N PMID:26936422 \N 740 4 \N \N \N PMID:26425933 \N 739 4 \N \N \N PMID:22785162 \N 738 4 \N \N \N PMID:24295214 \N 737 4 \N \N \N PMID:27706631 \N 736 4 \N \N \N PMID:25006967 \N 735 4 \N \N \N PMID:18717966 \N 734 4 \N \N \N PMID:26901498 \N 733 4 \N \N \N PMID:25678226 \N 732 4 \N \N \N PMID:26638021 \N 731 4 \N \N \N PMID:27296287 \N 730 4 \N \N \N PMID:28604785 \N 729 4 \N \N \N PMID:28813538 \N 728 4 \N \N \N PMID:25886970 \N 727 4 \N \N \N PMID:24987066 \N 488 7 nstd24 Fadista 2008 "A snapshot of CNVs in the pig genome." PMID:19079605 ftp://ftp.ebi.ac.uk/pub/databases/dgva/nstd24_Fadista_et_al_2008 PMID:19079605 Control Set 489 7 nstd44 Ramayo-Caldas 2010 "Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip." PMID:20969757 ftp://ftp.ebi.ac.uk/pub/databases/dgva/nstd44_Ramayo-Caldas_et_al_2010 PMID:20969757 Control Set 726 4 \N \N \N PMID:26537429 \N 725 4 \N \N \N PMID:26580276 \N 724 4 \N \N \N PMID:26641170 \N 723 4 \N \N \N PMID:22688438 \N 722 4 \N \N \N PMID:28118822 \N 721 4 \N \N \N PMID:24643240 \N 720 4 \N \N \N PMID:22831392 \N 719 4 \N \N \N PMID:20978532 \N 718 4 \N \N \N PMID:25189197 \N 717 4 \N \N \N PMID:26121138 \N 716 4 \N \N \N PMID:24299188 \N 715 4 \N \N \N PMID:24707962 \N 714 4 \N \N \N PMID:26576866 \N 713 4 \N \N \N PMID:28489967 \N 712 4 \N \N \N PMID:23393604 \N 711 4 \N \N \N PMID:29672875 \N 710 4 \N \N \N PMID:27296164 \N 709 4 \N \N \N PMID:22985182 \N 708 4 \N \N \N PMID:22585800 \N 707 4 \N \N \N PMID:24506094 \N 706 4 \N \N \N PMID:25359100 \N 705 4 \N \N \N PMID:26024912 \N 704 4 \N \N \N PMID:27473603 \N 703 4 \N \N \N PMID:25090094 \N 702 4 \N \N \N PMID:19284518 \N 701 4 \N \N \N PMID:26822294 \N 700 4 \N \N \N PMID:22496488 \N 699 4 \N \N \N PMID:23825321 \N 698 4 \N \N \N PMID:28046140 \N 697 4 \N \N \N PMID:22607048 \N 696 4 \N \N \N PMID:27642173 \N 695 4 \N \N \N PMID:28831160 \N 694 4 \N \N \N PMID:24225222 \N 693 4 \N \N \N PMID:21311593 \N 692 4 \N \N \N PMID:27819726 \N 691 4 \N \N \N PMID:19519793 \N 690 4 \N \N \N PMID:27435880 \N 689 4 \N \N \N PMID:23153328 \N 688 4 \N \N \N PMID:22497573 \N 687 4 \N \N \N PMID:27135998 \N 568 7 nstd117 Long 2015 "We performed a case-control genome-wide CNV association study of Umbilical hernia (UH) on 905 pigs from Duroc, Landrace and Yorkshire breeds using the Porcine SNP60 BeadChip and PennCNV algorithm. We firstly constructed a genomic map comprising 6,193 CNVs that pertain to 737 CNV regions (CNVRs). Then, we identified eight CNVs significantly associated with the risk for UH in the three pig breeds. Six of seven significantly associated CNVs were validated using quantitative real-time PCR. Notably, a rare CNV (CNV14:13030843-13059455) encompassing the NUGGC gene, implicated in human omphalocele and inguinal hernia, was strongly associated with UH (Permutation-corrected P = 0.0015) in Duroc pigs" ftp://ftp.ebi.ac.uk/pub/databases/dgva/nstd117_Long_et_al_2016 \N Case-Control 686 4 \N \N \N PMID:21383979 \N 685 4 \N \N \N PMID:28380601 \N 684 4 \N \N \N PMID:21454860 \N 683 4 \N \N \N PMID:28759885 \N 682 4 \N \N \N PMID:25340394 \N 681 4 \N \N \N PMID:26020169 \N 680 4 \N \N \N PMID:23977060 \N 679 4 \N \N \N PMID:28500374 \N 678 4 \N \N \N PMID:24605821 \N 677 4 \N \N \N PMID:23048140 \N 676 4 \N \N \N PMID:28597956 \N 675 4 \N \N \N PMID:26850549 \N 674 4 \N \N \N PMID:28727104 \N 673 4 \N \N \N PMID:23820242 \N 672 4 \N \N \N PMID:27094516 \N 671 4 \N \N \N PMID:26418247 \N 670 4 \N \N \N PMID:24671582 \N 669 4 \N \N \N PMID:24663154 \N 668 4 \N \N \N PMID:27809465 \N 569 7 nstd138 Li 2016 "We identified candidate indels in ten pig assemblies using a previously reported methodology. The de novo assembly of ten individuals were separately aligned onto the reference genome (Sscrofa10.2) using the LASTZ tool. The predicted gaps in the pair-wise alignments between the two genome assemblies were extracted using the SOAP software and defined as candidate indels. To filter out spurious indels, we separately aligned the reads onto both the reference genome (Sscrofa10.2) and ten assemblies using the BWA tool, and calculated the read coverage for each candidate indel. Then different criteria were used to validate the candidate indels ? 50 bp or >" ftp://ftp.ebi.ac.uk/pub/databases/dgva/nstd138_Li_et_al_2016 \N Control Set 667 4 \N \N \N PMID:23063408 \N 666 4 \N \N \N PMID:24758572 \N 665 4 \N \N \N PMID:24528607 \N 664 4 \N \N \N PMID:23628452 \N 663 4 \N \N \N PMID:29522525 \N 662 4 \N \N \N PMID:24961592 \N 661 4 \N \N \N PMID:26599230 \N 660 4 \N \N \N PMID:28890999 \N 659 4 \N \N \N PMID:23777416 \N 658 4 \N \N \N PMID:25498336 \N 657 4 \N \N \N PMID:24533460 \N 656 4 \N \N \N PMID:25935846 \N 655 4 \N \N \N PMID:22497572 \N 654 4 \N \N \N PMID:21530096 \N 653 4 \N \N \N PMID:24962532 \N 652 4 \N \N \N PMID:23840294 \N 651 4 \N \N \N PMID:21107721 \N 650 4 \N \N \N PMID:28472114 \N 649 4 \N \N \N PMID:27097669 \N 648 4 \N \N \N PMID:26796620 \N 647 4 \N \N \N PMID:27050409 \N 646 4 \N \N \N PMID:28402008 \N 645 4 \N \N \N PMID:23762394 \N 644 4 \N \N \N PMID:26059234 \N 643 4 \N \N \N PMID:26923368 \N 642 4 \N \N \N PMID:23437861 \N 641 4 \N \N \N PMID:23980905 \N 640 4 \N \N \N PMID:25754835 \N 639 4 \N \N \N PMID:23029068 \N 638 4 \N \N \N PMID:28196480 \N 637 4 \N \N \N PMID:25885760 \N 636 4 \N \N \N PMID:22682687 \N 635 4 \N \N \N PMID:28111436 \N 634 4 \N \N \N PMID:25962760 \N 633 4 \N \N \N PMID:22578477 \N 632 4 \N \N \N PMID:23724019 \N 830 4 \N \N \N PMID:25158056 \N 831 4 \N \N \N PMID:25879925 \N 832 4 \N \N \N PMID:23638110 \N 833 4 \N \N \N PMID:25781935 \N 834 4 \N \N \N PMID:27226276 \N 835 4 \N \N \N PMID:27028052 \N 836 4 \N \N \N PMID:29843603 \N 837 4 \N \N \N PMID:22404359 \N 838 4 \N \N \N PMID:24428918 \N 839 4 \N \N \N PMID:22244367 \N 840 4 \N \N \N PMID:29034488 \N 841 4 \N \N \N PMID:24894739 \N 842 4 \N \N \N PMID:25149343 \N 843 4 \N \N \N PMID:28475954 \N 844 4 \N \N \N PMID:28193157 \N 845 4 \N \N \N PMID:21507230 \N 846 4 \N \N \N PMID:29020941 \N 847 4 \N \N \N PMID:30308042 \N 848 4 \N \N \N PMID:30294799 \N 849 4 \N \N \N PMID:30417949 \N 850 4 \N \N \N PMID:29931419 \N 851 4 \N \N \N PMID:28054563 \N 852 4 \N \N \N PMID:29978910 \N 853 4 \N \N \N PMID:30153624 \N 854 4 \N \N \N PMID:29602194 \N 855 4 \N \N \N PMID:30405681 \N 856 4 \N \N \N PMID:29672877 \N 857 4 \N \N \N PMID:30300804 \N 858 4 \N \N \N PMID:30132933 \N 859 4 \N \N \N PMID:31266237 \N 860 4 \N \N \N PMID:31132591 \N 861 4 \N \N \N PMID:31065004 \N 862 4 \N \N \N PMID:30974885 \N 863 4 \N \N \N PMID:31024621 \N 864 4 \N \N \N PMID:31133085 \N 865 4 \N \N \N PMID:30606113 \N 866 4 \N \N \N PMID:ISU0112 \N 867 4 \N \N \N PMID:30439481 \N 868 4 \N \N \N PMID:31087081 \N 869 4 \N \N \N PMID:ISU0110 \N 870 4 \N \N \N PMID:ISU0101 \N 871 4 \N \N \N PMID:30815903 \N 872 4 \N \N \N PMID:31246983 \N 873 4 \N \N \N PMID:30832586 \N 874 4 \N \N \N PMID:30237295 \N 875 4 \N \N \N PMID:31297858 \N 876 4 \N \N \N PMID:ISU0104 \N 877 4 \N \N \N PMID:31316554 \N 878 4 \N \N \N PMID:30765794 \N 879 4 \N \N \N PMID:30584983 \N 880 4 \N \N \N PMID:30707936 \N 881 4 \N \N \N PMID:31188900 \N 882 4 \N \N \N PMID:29963229 \N 883 4 \N \N \N PMID:29879826 \N 884 4 \N \N \N PMID:29695451 \N 885 4 \N \N \N PMID:31029102 \N 886 4 \N \N \N PMID:30746724 \N 887 4 \N \N \N PMID:30815891 \N 888 4 \N \N \N PMID:31316547 \N 889 4 \N \N \N PMID:31475745 \N 890 4 \N \N \N PMID:31633210 \N 891 4 \N \N \N PMID:31610816 \N 892 4 \N \N \N PMID:31443641 \N 893 4 \N \N \N PMID:31306098 \N 894 4 \N \N \N PMID:31506991 \N 895 4 \N \N \N PMID:31561612 \N 896 4 \N \N \N PMID:30506450 \N 897 4 \N \N \N PMID:31362194 \N 898 4 \N \N \N PMID:31608119 \N 899 4 \N \N \N PMID:31569476 \N 900 4 \N \N \N PMID:31909836 \N 901 4 \N \N \N PMID:31960078 \N 902 4 \N \N \N PMID:31940936 \N 903 4 \N \N \N PMID:32511786 \N 904 4 \N \N \N PMID:29194674 \N 905 4 \N \N \N PMID:32037995 \N 906 4 \N \N \N PMID:29580300 \N 907 4 \N \N \N PMID:31708975 \N 908 4 \N \N \N PMID:32344859 \N 909 4 \N \N \N PMID:31768540 \N 910 4 \N \N \N PMID:30869175 \N 911 4 \N \N \N PMID:29059722 \N 912 4 \N \N \N PMID:31150538 \N 913 4 \N \N \N PMID:29528397 \N 914 4 \N \N \N PMID:33058170 \N 915 4 \N \N \N PMID:32292414 \N 916 4 \N \N \N PMID:32538338 \N 917 4 \N \N \N PMID:32055823 \N 918 4 \N \N \N PMID:31373884 \N 919 4 \N \N \N PMID:32038708 \N 920 4 \N \N \N PMID:30381738 \N 921 4 \N \N \N PMID:31652864 \N 922 4 \N \N \N PMID:32232994 \N 923 4 \N \N \N PMID:32054232 \N 924 4 \N \N \N PMID:31796051 \N 925 4 \N \N \N PMID:29534777 \N 926 4 \N \N \N PMID:29892924 \N 927 4 \N \N \N PMID:31861561 \N 928 4 \N \N \N PMID:29200313 \N 929 4 \N \N \N PMID:29432614 \N 930 4 \N \N \N PMID:29096286 \N 931 4 \N \N \N PMID:31480184 \N 932 4 \N \N \N PMID:27162284 \N 933 4 \N \N \N PMID:32414370 \N 934 4 \N \N \N PMID:29778193 \N 935 4 \N \N \N PMID:29382056 \N 936 4 \N \N \N PMID:32380955 \N 937 4 \N \N \N PMID:30972109 \N 938 4 \N \N \N PMID:27136004 \N 939 4 \N \N \N PMID:29059723 \N 940 4 \N \N \N PMID:33266466 \N 941 4 \N \N \N PMID:28727023 \N 942 4 \N \N \N PMID:29386541 \N 943 4 \N \N \N PMID:32811870 \N 944 4 \N \N \N PMID:32761820 \N 945 4 \N \N \N PMID:33815461 \N 946 4 \N \N \N PMID:33292187 \N 947 4 \N \N \N PMID:34276758 \N 948 4 \N \N \N PMID:32888012 \N 949 4 \N \N \N PMID:33667011 \N 950 4 \N \N \N PMID:34342034 \N 951 4 \N \N \N PMID:33324693 \N 952 4 \N \N \N PMID:31227735 \N 953 4 \N \N \N PMID:33073401 \N 954 4 \N \N \N PMID:34482559 \N 955 4 \N \N \N PMID:33407097 \N 956 4 \N \N \N PMID:34285319 \N 957 4 \N \N \N PMID:33372713 \N 958 4 \N \N \N PMID:34282453 \N 959 4 \N \N \N PMID:34707635 \N 960 4 \N \N \N PMID:34000609 \N 961 4 \N \N \N PMID:34256695 \N 962 4 \N \N \N PMID:32513168 \N 963 4 \N \N \N PMID:33888058 \N 964 4 \N \N \N PMID:34610786 \N 965 4 \N \N \N PMID:34291482 \N 966 4 \N \N \N PMID:34425484 \N 967 4 \N \N \N PMID:34749647 \N 968 4 \N \N \N PMID:33805666 \N 969 4 \N \N \N PMID:32363597 \N 970 4 \N \N \N PMID:32337028 \N 971 4 \N \N \N PMID:33671441 \N 972 4 \N \N \N PMID:34110414 \N 973 4 \N \N \N PMID:27165028 \N 974 4 \N \N \N PMID:34096632 \N 975 4 \N \N \N PMID:28370091 \N 976 4 \N \N \N PMID:34192356 \N 977 4 \N \N \N PMID:35224076 \N 978 4 \N \N \N PMID:35026054 \N 979 4 \N \N \N PMID:34906088 \N 980 4 \N \N \N PMID:32615048 \N 981 4 \N \N \N PMID:35692822 \N 982 4 \N \N \N PMID:35892552 \N 983 4 \N \N \N PMID:34403536 \N 984 4 \N \N \N PMID:35034121 \N 985 4 \N \N \N PMID:35581286 \N 986 4 \N \N \N PMID:35565484 \N 987 4 \N \N \N PMID:35464836 \N 988 4 \N \N \N PMID:35776924 \N 989 4 \N \N \N PMID:35622405 \N 990 4 \N \N \N PMID:35553682 \N 991 4 \N \N \N PMID:35419600 \N 992 4 \N \N \N PMID:36108237 \N 993 4 \N \N \N PMID:36360227 \N 994 4 \N \N \N PMID:36011365 \N 995 4 \N \N \N PMID:36410176 \N 996 4 \N \N \N PMID:36360222 \N 997 4 \N \N \N PMID:28696024 \N 998 4 \N \N \N PMID:35971078 \N 999 4 \N \N \N PMID:36362120 \N 1000 4 \N \N \N PMID:36305366 \N 1001 4 \N \N \N PMID:35739920 \N 1002 4 \N \N \N PMID:36359036 \N 1003 4 \N \N \N PMID:36358336 \N 1004 4 \N \N \N PMID:36011359 \N 1005 4 \N \N \N PMID:35893031 \N 1006 4 \N \N \N PMID:36830509 \N 1007 4 \N \N \N PMID:36833449 \N 1008 4 \N \N \N PMID:36650110 \N 1009 4 \N \N \N PMID:36511585 \N 1010 4 \N \N \N PMID:36911996 \N 1011 4 \N \N \N PMID:36814900 \N 1012 4 \N \N \N PMID:36506319 \N 1013 4 \N \N \N PMID:36685960 \N 1014 4 \N \N \N PMID:36899665 \N 1015 4 \N \N \N PMID:36421806 \N 1016 4 \N \N \N PMID:34285308 \N 1017 4 \N \N \N PMID:37038103 \N 1018 4 \N \N \N PMID:37007966 \N 1019 4 \N \N \N PMID:37510213 \N 1020 4 \N \N \N PMID:37107619 \N 1021 4 \N \N \N PMID:36727217 \N 1022 4 \N \N \N PMID:36230219 \N 1023 4 \N \N \N PMID:36536008 \N 1024 4 \N \N \N PMID:37128869 \N 1025 4 \N \N \N PMID:36848325 \N 1026 4 \N \N \N PMID:36930061 \N 1027 4 \N \N \N PMID:37906998 \N 1028 4 \N \N \N PMID:37881102 \N 1029 4 \N \N \N PMID:37570223 \N 1030 4 \N \N \N PMID:37822282 \N 1031 4 \N \N \N PMID:33116177 \N 1032 4 \N \N \N PMID:38185881 \N 1033 4 \N \N \N PMID:37372438 \N 1034 4 \N \N \N PMID:38113634 \N 1035 4 \N \N \N PMID:38098441 \N 1036 4 \N \N \N PMID:38075681 \N 1037 4 \N \N \N PMID:37893967 \N 1038 4 \N \N \N PMID:38540441 \N 1039 4 \N \N \N PMID:38191772 \N 1040 4 \N \N \N PMID:37814452 \N 1041 4 \N \N \N PMID:37889833 \N 1042 4 \N \N \N PMID:37705280 \N