1 2018-10-17 17:19:00 mt_genbank_import \N NC_013189.1 \N \N \N \N \N \N \N \N \N 2 2018-10-17 17:34:06 repeatmask_repeatmodeler \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker -nolow -lib "/hps/nobackup2/production/ensembl/genebuild/custom_repeat_libraries/repeatmodeler/species/sinocyclocheilus_grahami/sinocyclocheilus_grahami.repeatmodeler.fa" -engine "crossmatch" HiveRepeatMasker \N \N \N 3 2018-10-17 19:05:36 repeatmask_repbase_teleost \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker -nolow -species "Teleostei" -engine "crossmatch" HiveRepeatMasker \N \N \N 4 2018-10-18 02:08:06 dust \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/dustmasker \N HiveDust \N \N \N 5 2018-10-18 02:09:51 trf \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/trf \N HiveTRF \N \N \N 6 2018-10-18 03:30:12 eponine \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/java -epojar => /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/opt/eponine/libexec/eponine-scan.jar, -threshold => 0.999 HiveEponine \N \N \N 7 2018-10-18 03:37:39 cpg \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cpg_lh \N HiveCPG \N \N \N 8 2018-10-18 03:38:15 trnascan \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tRNAscan-SE \N HiveTRNAScan \N \N \N 9 2018-10-18 04:01:50 genscan HumanIso.smat \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/share/HumanIso.smat \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/genscan \N HiveGenscan \N \N \N 10 2019-05-01 09:17:39 ensembl \N \N \N \N \N \N \N \N \N \N \N 17 2018-10-20 14:56:00 ncrna \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/ncrna_2016_05 \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/opt/infernal10/bin/cmsearch \N HiveInfernal \N \N \N 18 2018-10-20 14:06:14 rfamblast \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/ncrna_2016_05/filtered.fasta \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn -num_threads 3 -word_size 12 -num_alignments 5000 -num_descriptions 5000 -max_hsps 1 HiveBlastRfam \N \N \N 29 2019-09-20 11:29:20 rnaseq_intron_support \N \N \N \N \N \N \N \N \N \N \N 22 2018-10-20 14:02:59 blastmirna \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/mirbase_22/all_mirnas.fa \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn -num_threads 3 HiveBlastmiRNA \N \N \N 27 2019-05-08 12:21:46 other_protein uniprot \N \N \N \N \N \N \N \N \N \N 30 2019-09-28 06:33:49 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 31 2019-09-28 06:33:49 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 32 2019-09-28 06:48:46 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 189 2021-07-13 16:28:37 gene3d Gene3D 4.3.0 \N InterProScan 5.52-86.0 \N \N \N \N \N \N 223 2023-01-25 13:00:38 cdd CDD 3.20 \N InterProScan 5.60-92.0 \N \N \N \N \N \N 255 2024-06-17 03:29:45 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 254 2024-06-17 03:29:09 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 258 2024-06-17 03:30:09 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 256 2024-06-17 03:29:57 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 171 2021-01-10 14:25:54 pirsf PIRSF 3.10 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 257 2024-06-17 03:29:59 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 173 2021-01-10 14:28:05 prints PRINTS 42.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 237 2023-06-17 22:50:08 smart Smart 9.0 \N InterProScan 5.62-94.0 \N \N \N \N \N \N 179 2021-01-10 14:33:11 superfamily SuperFamily 1.75 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 176 2021-01-10 14:29:59 tigrfam TIGRfam 15.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 175 2021-01-10 14:29:56 sfld SFLD 4 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 177 2021-01-10 14:32:10 mobidblite MobiDBLite 2.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 178 2021-01-10 14:32:18 ncoils ncoils 2.2.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 184 2021-01-10 14:36:52 tmhmm TMHMM 2.0c \N InterProScan 5.48-83.0 \N \N \N \N \N \N 264 2024-07-01 15:35:34 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 180 2021-01-10 14:33:13 signalp SignalP 4.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 182 2021-01-10 14:34:10 seg Seg \N \N seg \N \N \N \N \N \N \N 267 2024-07-25 12:55:53 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 265 2024-07-22 10:08:05 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 79 2020-04-08 17:24:37 cdna_alignment_core \N \N \N \N \N \N \N \N \N \N \N 268 2024-07-25 15:12:46 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N 260 2024-06-17 03:30:10 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 261 2024-07-01 15:35:34 Phobius Phobius 1.01 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 262 2024-07-01 15:35:34 SignalP_GRAM_P SignalP_GRAM_POSITIVE 4.1 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 263 2024-07-01 15:35:34 SignalP_GRAM_N SignalP_GRAM_NEGATIVE 4.1 \N InterProScan 5.68-100.0 \N \N \N \N \N \N