151 For various species, proteins from UniProtKB are aligned to the genome with GeneWise. Other species proteins 1 {"protein_align_feature": {"do_not_display": "1"}} 39 BWA alignments of 1 a RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site 1 a RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "1 a"}, "colour_key": "bam"} 46 Spliced-read support for 1 a 1 a intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "1 a"}} 49 Annotation generated from 1 a RNA-seq data 1 a RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "1 a"}, "colour_key": "human_rnaseq"} 48 Spliced-read support for 1 a 1 a intron-spanning reads 1 \N 62 BWA alignments of 1 b RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site 1 b RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "1 b"}, "colour_key": "bam"} 67 Spliced-read support for 1 b 1 b intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "1 b"}} 69 Annotation generated from 1 b RNA-seq data 1 b RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "1 b"}, "colour_key": "human_rnaseq"} 68 Spliced-read support for 1 b 1 b intron-spanning reads 1 \N 70 BWA alignments of 1 c RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site 1 c RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "1 c"}, "colour_key": "bam"} 72 Spliced-read support for 1 c 1 c intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "1 c"}} 71 Annotation generated from 1 c RNA-seq data 1 c RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "1 c"}, "colour_key": "human_rnaseq"} 73 Spliced-read support for 1 c 1 c intron-spanning reads 1 \N 106 BWA alignments of 2 a RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site 2 a RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "2 a"}, "colour_key": "bam"} 108 Spliced-read support for 2 a 2 a intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "2 a"}} 107 Annotation generated from 2 a RNA-seq data 2 a RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "2 a"}, "colour_key": "human_rnaseq"} 109 Spliced-read support for 2 a 2 a intron-spanning reads 1 \N 86 BWA alignments of 2 b RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site 2 b RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "2 b"}, "colour_key": "bam"} 88 Spliced-read support for 2 b 2 b intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "2 b"}} 87 Annotation generated from 2 b RNA-seq data 2 b RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "2 b"}, "colour_key": "human_rnaseq"} 89 Spliced-read support for 2 b 2 b intron-spanning reads 1 \N 102 BWA alignments of 2 c RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site 2 c RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "2 c"}, "colour_key": "bam"} 104 Spliced-read support for 2 c 2 c intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "2 c"}} 103 Annotation generated from 2 c RNA-seq data 2 c RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "2 c"}, "colour_key": "human_rnaseq"} 105 Spliced-read support for 2 c 2 c intron-spanning reads 1 \N 59 BWA alignments of anterior kidney RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site anterior kidney RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "anterior kidney"}, "colour_key": "bam"} 64 Spliced-read support for anterior kidney anterior kidney intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "anterior kidney"}} 65 Annotation generated from anterior kidney RNA-seq data anterior kidney RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "anterior kidney"}, "colour_key": "human_rnaseq"} 66 Spliced-read support for anterior kidney anterior kidney intron-spanning reads 1 \N 28 BWA alignments of brain RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site brain RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "brain"}, "colour_key": "bam"} 34 Spliced-read support for brain brain intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "brain"}} 37 Annotation generated from brain RNA-seq data brain RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "brain"}, "colour_key": "human_rnaseq"} 36 Spliced-read support for brain brain intron-spanning reads 1 \N 54 BWA alignments of distal intestine RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site distal intestine RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "distal intestine"}, "colour_key": "bam"} 56 Spliced-read support for distal intestine distal intestine intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "distal intestine"}} 55 Annotation generated from distal intestine RNA-seq data distal intestine RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "distal intestine"}, "colour_key": "human_rnaseq"} 57 Spliced-read support for distal intestine distal intestine intron-spanning reads 1 \N 78 BWA alignments of female immature 35 90 dpf RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site female immature 35 90 dpf RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "female immature 35 90 dpf"}, "colour_key": "bam"} 82 Spliced-read support for female immature 35 90 dpf female immature 35 90 dpf intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "female immature 35 90 dpf"}} 80 Annotation generated from female immature 35 90 dpf RNA-seq data female immature 35 90 dpf RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "female immature 35 90 dpf"}, "colour_key": "human_rnaseq"} 81 Spliced-read support for female immature 35 90 dpf female immature 35 90 dpf intron-spanning reads 1 \N 14 BWA alignments of gill RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site gill RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "gill"}, "colour_key": "bam"} 16 Spliced-read support for gill gill intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "gill"}} 15 Annotation generated from gill RNA-seq data gill RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "gill"}, "colour_key": "human_rnaseq"} 17 Spliced-read support for gill gill intron-spanning reads 1 \N 10 BWA alignments of head kidney RNA-seq data. This BAM file can be downloaded FROM the Ensembl FTP site head kidney RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "head kidney"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 12 Spliced-read support for head kidney head kidney intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "head kidney"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 11 Annotation generated FROM head kidney RNA-seq data head kidney RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "head kidney"}, "type": "rnaseq", "zmenu": "RNASeq"} 13 Spliced-read support for head kidney head kidney intron-spanning reads 1 \N 134 BWA alignments of head kindey RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site head kindey RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "head kindey"}, "colour_key": "bam"} 136 Spliced-read support for head kindey head kindey intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "head kindey"}} 135 Annotation generated from head kindey RNA-seq data head kindey RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "head kindey"}, "colour_key": "human_rnaseq"} 137 Spliced-read support for head kindey head kindey intron-spanning reads 1 \N 126 BWA alignments of kindey RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site kindey RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "kindey"}, "colour_key": "bam"} 128 Spliced-read support for kindey kindey intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "kindey"}} 127 Annotation generated from kindey RNA-seq data kindey RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "kindey"}, "colour_key": "human_rnaseq"} 129 Spliced-read support for kindey kindey intron-spanning reads 1 \N 26 BWA alignments of liver RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site liver RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "liver"}, "colour_key": "bam"} 32 Spliced-read support for liver liver intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "liver"}} 29 Annotation generated from liver RNA-seq data liver RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "liver"}, "colour_key": "human_rnaseq"} 30 Spliced-read support for liver liver intron-spanning reads 1 \N 74 BWA alignments of male g300 1 RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male g300 1 RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male g300 1"}, "colour_key": "bam"} 76 Spliced-read support for male g300 1 male g300 1 intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male g300 1"}} 75 Annotation generated from male g300 1 RNA-seq data male g300 1 RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male g300 1"}, "colour_key": "human_rnaseq"} 77 Spliced-read support for male g300 1 male g300 1 intron-spanning reads 1 \N 50 BWA alignments of male g300 2 RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male g300 2 RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male g300 2"}, "colour_key": "bam"} 52 Spliced-read support for male g300 2 male g300 2 intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male g300 2"}} 51 Annotation generated from male g300 2 RNA-seq data male g300 2 RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male g300 2"}, "colour_key": "human_rnaseq"} 53 Spliced-read support for male g300 2 male g300 2 intron-spanning reads 1 \N 18 BWA alignments of male g300 3 RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male g300 3 RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male g300 3"}, "colour_key": "bam"} 20 Spliced-read support for male g300 3 male g300 3 intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male g300 3"}} 19 Annotation generated from male g300 3 RNA-seq data male g300 3 RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male g300 3"}, "colour_key": "human_rnaseq"} 21 Spliced-read support for male g300 3 male g300 3 intron-spanning reads 1 \N 94 BWA alignments of male g900 1 RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male g900 1 RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male g900 1"}, "colour_key": "bam"} 96 Spliced-read support for male g900 1 male g900 1 intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male g900 1"}} 95 Annotation generated from male g900 1 RNA-seq data male g900 1 RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male g900 1"}, "colour_key": "human_rnaseq"} 97 Spliced-read support for male g900 1 male g900 1 intron-spanning reads 1 \N 27 BWA alignments of male g900 2 RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male g900 2 RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male g900 2"}, "colour_key": "bam"} 31 Spliced-read support for male g900 2 male g900 2 intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male g900 2"}} 35 Annotation generated from male g900 2 RNA-seq data male g900 2 RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male g900 2"}, "colour_key": "human_rnaseq"} 33 Spliced-read support for male g900 2 male g900 2 intron-spanning reads 1 \N 40 BWA alignments of male g900 3 RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male g900 3 RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male g900 3"}, "colour_key": "bam"} 43 Spliced-read support for male g900 3 male g900 3 intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male g900 3"}} 47 Annotation generated from male g900 3 RNA-seq data male g900 3 RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male g900 3"}, "colour_key": "human_rnaseq"} 45 Spliced-read support for male g900 3 male g900 3 intron-spanning reads 1 \N 142 BWA alignments of male gill RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male gill RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male gill"}, "colour_key": "bam"} 144 Spliced-read support for male gill male gill intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male gill"}} 143 Annotation generated from male gill RNA-seq data male gill RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male gill"}, "colour_key": "human_rnaseq"} 145 Spliced-read support for male gill male gill intron-spanning reads 1 \N 79 BWA alignments of male immature 35 90 dpf RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male immature 35 90 dpf RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male immature 35 90 dpf"}, "colour_key": "bam"} 83 Spliced-read support for male immature 35 90 dpf male immature 35 90 dpf intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male immature 35 90 dpf"}} 84 Annotation generated from male immature 35 90 dpf RNA-seq data male immature 35 90 dpf RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male immature 35 90 dpf"}, "colour_key": "human_rnaseq"} 85 Spliced-read support for male immature 35 90 dpf male immature 35 90 dpf intron-spanning reads 1 \N 130 BWA alignments of male kidney RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male kidney RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male kidney"}, "colour_key": "bam"} 132 Spliced-read support for male kidney male kidney intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male kidney"}} 131 Annotation generated from male kidney RNA-seq data male kidney RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male kidney"}, "colour_key": "human_rnaseq"} 133 Spliced-read support for male kidney male kidney intron-spanning reads 1 \N 98 BWA alignments of male msiii iv stage RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male msiii iv stage RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male msiii iv stage"}, "colour_key": "bam"} 100 Spliced-read support for male msiii iv stage male msiii iv stage intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male msiii iv stage"}} 99 Annotation generated from male msiii iv stage RNA-seq data male msiii iv stage RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male msiii iv stage"}, "colour_key": "human_rnaseq"} 101 Spliced-read support for male msiii iv stage male msiii iv stage intron-spanning reads 1 \N 114 BWA alignments of male msiii stage RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male msiii stage RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male msiii stage"}, "colour_key": "bam"} 116 Spliced-read support for male msiii stage male msiii stage intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male msiii stage"}} 115 Annotation generated from male msiii stage RNA-seq data male msiii stage RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male msiii stage"}, "colour_key": "human_rnaseq"} 117 Spliced-read support for male msiii stage male msiii stage intron-spanning reads 1 \N 110 BWA alignments of male msiv stage RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male msiv stage RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male msiv stage"}, "colour_key": "bam"} 112 Spliced-read support for male msiv stage male msiv stage intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male msiv stage"}} 111 Annotation generated from male msiv stage RNA-seq data male msiv stage RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male msiv stage"}, "colour_key": "human_rnaseq"} 113 Spliced-read support for male msiv stage male msiv stage intron-spanning reads 1 \N 22 BWA alignments of male msvi stage RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male msvi stage RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male msvi stage"}, "colour_key": "bam"} 24 Spliced-read support for male msvi stage male msvi stage intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male msvi stage"}} 23 Annotation generated from male msvi stage RNA-seq data male msvi stage RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male msvi stage"}, "colour_key": "human_rnaseq"} 25 Spliced-read support for male msvi stage male msvi stage intron-spanning reads 1 \N 58 BWA alignments of male msv stage RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male msv stage RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male msv stage"}, "colour_key": "bam"} 63 Spliced-read support for male msv stage male msv stage intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male msv stage"}} 60 Annotation generated from male msv stage RNA-seq data male msv stage RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male msv stage"}, "colour_key": "human_rnaseq"} 61 Spliced-read support for male msv stage male msv stage intron-spanning reads 1 \N 122 BWA alignments of male unknown RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site male unknown RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "male unknown"}, "colour_key": "bam"} 124 Spliced-read support for male unknown male unknown intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "male unknown"}} 123 Annotation generated from male unknown RNA-seq data male unknown RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "male unknown"}, "colour_key": "human_rnaseq"} 125 Spliced-read support for male unknown male unknown intron-spanning reads 1 \N 146 BWA alignments of merged RNA-seq data. This BAM file can be downloaded FROM the Ensembl FTP site merged RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 148 Spliced-read support for merged merged intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 147 Annotation generated FROM merged RNA-seq data merged RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq"} 149 Spliced-read support for merged merged intron-spanning reads 1 \N 38 BWA alignments of muscle RNA-seq data. This BAM file can be downloaded FROM the Ensembl FTP site muscle RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "muscle"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 44 Spliced-read support for muscle muscle intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "muscle"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 41 Annotation generated FROM muscle RNA-seq data muscle RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "muscle"}, "type": "rnaseq", "zmenu": "RNASeq"} 42 Spliced-read support for muscle muscle intron-spanning reads 1 \N 118 BWA alignments of pooled male and female larvae 5 30 dpf RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site pooled male and female larvae 5 30 dpf RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "pooled male and female larvae 5 30 dpf"}, "colour_key": "bam"} 120 Spliced-read support for pooled male and female larvae 5 30 dpf pooled male and female larvae 5 30 dpf intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "pooled male and female larvae 5 30 dpf"}} 119 Annotation generated from pooled male and female larvae 5 30 dpf RNA-seq data pooled male and female larvae 5 30 dpf RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "pooled male and female larvae 5 30 dpf"}, "colour_key": "human_rnaseq"} 121 Spliced-read support for pooled male and female larvae 5 30 dpf pooled male and female larvae 5 30 dpf intron-spanning reads 1 \N 90 BWA alignments of pyloric caeca RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site pyloric caeca RNA-seq BWA alignments 1 {"zmenu": "RNASeq_bam", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"menu": "rnaseq", "group": "ENA", "group_order": "1", "column": "BAM files", "row": "pyloric caeca"}, "colour_key": "bam"} 92 Spliced-read support for pyloric caeca pyloric caeca intron-spanning reads 1 {"type": "rnaseq", "zmenu": "Supporting_alignment", "label_key": "", "colour_key": "intron_support", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Intron-spanning reads", "row": "pyloric caeca"}} 91 Annotation generated from pyloric caeca RNA-seq data pyloric caeca RNA-seq gene models 1 {"zmenu": "RNASeq", "label_key": "RNASeq [biotype]", "type": "rnaseq", "matrix": {"group": "ENA", "menu": "rnaseq", "column": "Gene models", "row": "pyloric caeca"}, "colour_key": "human_rnaseq"} 93 Spliced-read support for pyloric caeca pyloric caeca intron-spanning reads 1 \N 138 BWA alignments of spleen RNA-seq data. This BAM file can be downloaded FROM the Ensembl FTP site spleen RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "spleen"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 140 Spliced-read support for spleen spleen intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "spleen"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 139 Annotation generated FROM spleen RNA-seq data spleen RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "spleen"}, "type": "rnaseq", "zmenu": "RNASeq"} 141 Spliced-read support for spleen spleen intron-spanning reads 1 \N