1 2017-08-14 14:29:25 mt_genbank_import \N NC_008218.1 \N \N \N \N \N \N \N \N \N 2 2017-08-14 14:34:35 repeatmask_repbase_primates \N 2016_08_29 \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker -nolow -species "primates" -engine "crossmatch" HiveRepeatMasker \N \N \N 3 2017-08-14 15:31:52 dust \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/dustmasker \N HiveDust \N \N \N 4 2017-08-14 15:33:56 trf \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/trf \N HiveTRF \N \N \N 5 2017-08-14 15:38:53 eponine \N \N \N \N \N /nfs/software/ensembl/latest/jenv/shims/java -epojar => /nfs/software/ensembl/latest/linuxbrew/Cellar/eponine/1.0/libexec/eponine-scan.jar, -threshold => 0.999 HiveEponine \N \N \N 6 2017-08-14 15:39:49 cpg \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cpg_lh \N HiveCPG \N \N \N 7 2017-08-14 15:41:22 trnascan \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tRNAscan-SE \N HiveTRNAScan \N \N \N 8 2017-08-14 15:44:30 genscan HumanIso.smat \N /nfs/software/ensembl/latest/linuxbrew/share/HumanIso.smat \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/genscan \N HiveGenscan \N \N \N 9 2017-08-14 15:58:29 uniprot \N 2017_04 /hps/nobackup/production/ensembl/genebuild/blastdb/uniprot/uniprot_2017_04//uniprot_vertebrate \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastp -num_threads 3 -window_size 40 \N \N \N \N 10 2017-08-14 16:28:04 unigene \N 2016_10 /hps/nobackup/production/ensembl/genebuild/blastdb/unigene/unigene \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tblastn -num_threads 3 -window_size 40 \N \N \N \N 11 2017-08-14 16:37:27 vertrna \N 2016_04 /hps/nobackup/production/ensembl/genebuild/blastdb/vertrna/131/embl_vertrna-1 \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tblastn -num_threads 3 -window_size 40 \N \N \N \N 12 2017-09-13 09:53:19 ensembl \N \N \N \N \N \N \N \N \N \N \N 16 2017-08-31 15:13:53 rhinopithecus_roxellana_merged_rnaseq_ise \N \N \N \N \N \N \N RefineSolexaGenes \N \N \N 17 2017-08-15 22:04:30 cdna_alignment_core \N 2017_07 \N \N \N \N \N \N \N \N \N 18 2017-08-17 13:19:43 ncrna \N 2016_05 /hps/nobackup/production/ensembl/genebuild/blastdb/ncrna/ncrna_2016_05/ \N \N /nfs/production/panda/ensembl/leanne/programs/infernal/infernal-1.0/src/cmsearch \N HiveInfernal \N \N \N 19 2017-08-16 03:51:58 blastmirna \N 2016_05 /hps/nobackup/production/ensembl/genebuild/blastdb/ncrna/ncrna_2016_05/human_mirnas.fa \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn -num_threads 3 HiveBlastmiRNA \N \N \N 20 2017-08-16 03:48:47 rfamblast \N 2016_05 /hps/nobackup/production/ensembl/genebuild/blastdb/ncrna/ncrna_2016_05/filtered.fasta \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn -num_threads 3 -word_size 12 -num_alignments 5000 -num_descriptions 5000 -max_hsps 1 HiveBlastRfam \N \N \N 25 2017-08-15 22:20:54 refseq_cdna \N 2016_08 \N \N \N \N \N \N \N \N \N 26 2017-09-13 15:03:07 other_protein uniprot 2017_04 \N \N \N \N \N \N \N \N \N 27 2017-09-13 15:03:07 projected_transcript homo_sapiens_core_90_38 \N \N \N \N \N \N \N \N \N \N 304 2023-01-25 15:29:09 cdd CDD 3.20 \N InterProScan 5.60-92.0 \N \N \N \N \N \N 278 2021-07-13 16:22:38 gene3d Gene3D 4.3.0 \N InterProScan 5.52-86.0 \N \N \N \N \N \N 332 2024-06-17 03:47:27 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 333 2024-06-17 03:49:48 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 334 2024-06-17 03:51:20 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 335 2024-06-17 03:52:06 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 316 2023-06-17 21:51:32 smart Smart 9.0 \N InterProScan 5.62-94.0 \N \N \N \N \N \N 260 2021-01-10 13:31:56 pirsf PIRSF 3.10 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 262 2021-01-10 13:33:23 prints PRINTS 42.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 337 2024-06-17 03:54:13 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 264 2021-01-10 13:34:47 sfld SFLD 4 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 267 2021-01-10 13:37:52 superfamily SuperFamily 1.75 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 265 2021-01-10 13:36:00 tigrfam TIGRfam 15.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 266 2021-01-10 13:37:02 mobidblite MobiDBLite 2.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 338 2024-06-17 03:54:22 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 271 2021-01-10 13:40:22 signalp SignalP 4.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 269 2021-01-10 13:38:47 tmhmm TMHMM 2.0c \N InterProScan 5.48-83.0 \N \N \N \N \N \N 270 2021-01-10 13:40:18 seg Seg \N \N seg \N \N \N \N \N \N \N 49 2017-10-15 13:41:41 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 50 2017-10-15 13:41:41 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 51 2017-10-15 13:44:25 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 339 2024-07-22 10:07:32 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 340 2024-07-25 12:30:08 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 268 2021-01-10 13:38:14 ncoils ncoils 2.2.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 341 2024-07-25 13:55:22 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N 336 2024-06-17 03:53:10 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N