1 2018-05-15 15:13:01 mt_genbank_import \N NC_024238.1 \N \N \N \N \N \N \N \N \N 2 2018-05-15 15:29:05 repeatmask_repbase_teleost \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker -nolow -species "Teleostei" -engine "crossmatch" HiveRepeatMasker \N \N \N 3 2018-05-15 17:05:22 repeatmask_repeatmodeler \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker -nolow -lib "/hps/nobackup2/production/ensembl/genebuild/custom_repeat_libraries/repeatmodeler/species/poecilia_reticulata/poecilia_reticulata.repeatmodeler.fa" -engine "crossmatch" HiveRepeatMasker \N \N \N 4 2018-05-16 03:11:41 dust \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/dustmasker \N HiveDust \N \N \N 5 2018-05-16 03:24:17 trf \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/trf \N HiveTRF \N \N \N 6 2018-05-16 03:43:14 eponine \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/java -epojar => /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/opt/eponine/libexec/eponine-scan.jar, -threshold => 0.999 HiveEponine \N \N \N 7 2018-05-16 03:43:21 cpg \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cpg_lh \N HiveCPG \N \N \N 8 2018-05-16 03:43:58 trnascan \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tRNAscan-SE \N HiveTRNAScan \N \N \N 9 2018-05-16 03:48:36 genscan HumanIso.smat \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/share/HumanIso.smat \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/genscan \N HiveGenscan \N \N \N 10 2018-05-16 04:22:32 uniprot \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/uniprot/uniprot_2018_04/uniprot_vertebrate \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastp -num_threads 3 -window_size 40 \N \N \N \N 11 2018-05-16 04:30:03 vertrna \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/vertrna/134/embl_vertrna-1 \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tblastn -num_threads 3 -window_size 40 \N \N \N \N 12 2018-05-16 04:42:30 unigene \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/unigene/unigene \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tblastn -num_threads 3 -window_size 40 \N \N \N \N 13 2018-07-09 14:10:35 ensembl \N \N \N \N \N \N \N \N \N \N \N 16 2018-07-07 07:31:57 merged_rnaseq_ise \N \N \N \N \N \N -num_threads 3 -window_size 40 Bio::EnsEMBL::Analysis::Hive::RunnableDB::HiveBlastRNASeqPep \N \N \N 18 2018-05-17 14:25:28 ncrna \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/ncrna_2016_05/ \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/opt/infernal10/bin/cmsearch \N HiveInfernal \N \N \N 19 2018-05-17 13:46:59 rfamblast \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/ncrna_2016_05/filtered.fasta \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn -num_threads 3 -word_size 12 -num_alignments 5000 -num_descriptions 5000 -max_hsps 1 HiveBlastRfam \N \N \N 22 2018-05-17 13:50:22 blastmirna \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/mirbase_22/all_mirnas.fa \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn -num_threads 3 HiveBlastmiRNA \N \N \N 25 2018-07-09 16:37:20 other_protein uniprot \N \N \N \N \N \N \N \N \N \N 26 2018-07-09 16:37:20 projected_transcript danio_rerio_core_92_11 \N \N \N \N \N \N \N \N \N \N 325 2023-01-25 16:06:48 cdd CDD 3.20 \N InterProScan 5.60-92.0 \N \N \N \N \N \N 291 2021-07-13 16:33:56 gene3d Gene3D 4.3.0 \N InterProScan 5.52-86.0 \N \N \N \N \N \N 356 2024-06-17 04:14:27 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 357 2024-06-17 04:14:59 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 358 2024-06-17 04:15:23 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 361 2024-06-17 04:19:20 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 273 2021-01-10 13:52:40 pirsf PIRSF 3.10 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 274 2021-01-10 13:54:00 prints PRINTS 42.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 359 2024-06-17 04:18:27 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 276 2021-01-10 13:54:42 sfld SFLD 4 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 339 2023-06-17 22:36:49 smart Smart 9.0 \N InterProScan 5.62-94.0 \N \N \N \N \N \N 278 2021-01-10 13:57:47 superfamily SuperFamily 1.75 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 279 2021-01-10 13:58:32 tigrfam TIGRfam 15.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 280 2021-01-10 13:59:53 mobidblite MobiDBLite 2.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 281 2021-01-10 14:00:05 ncoils ncoils 2.2.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 282 2021-01-10 14:01:12 signalp SignalP 4.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 286 2021-01-10 14:12:03 seg Seg \N \N seg \N \N \N \N \N \N \N 362 2024-06-17 04:20:08 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 283 2021-01-10 14:03:08 tmhmm TMHMM 2.0c \N InterProScan 5.48-83.0 \N \N \N \N \N \N 48 2018-07-26 01:40:02 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 49 2018-07-26 01:40:02 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 50 2018-07-26 01:40:36 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 51 2020-01-07 00:00:00 shortnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 52 2020-01-07 00:00:00 codingdensity \N \N \N \N \N \N \N \N \N \N \N 53 2020-01-07 00:00:00 pseudogenedensity \N \N \N \N \N \N \N \N \N \N \N 54 2020-01-07 00:00:00 longnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 55 2020-01-07 00:00:00 percentagerepeat \N \N \N \N \N \N \N \N \N \N \N 56 2020-01-07 00:00:00 percentgc \N \N \N \N \N \N \N \N \N \N \N 363 2024-07-22 10:07:59 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 366 2024-07-25 12:55:53 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 181 2020-04-08 16:53:27 cdna_alignment_core \N \N \N \N \N \N \N \N \N \N \N 364 2024-07-25 10:47:44 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N 360 2024-06-17 04:19:00 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N