11	Spliced RNASeq read support for 9 developmental stages in P. sinensis.	Nine developmental stage intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "9stages"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
16	Annotation generated using only RNASeq data from 9 developmental stages in P. sinensis.	Nine developmental stages RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "9stages"}, "type": "rnaseq", "zmenu": "RNASeq"}
32	Single-end 90 bp RNAseq reads for nine developmental stages from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_9stages.bam">pelodiscus_sinensis_pelsin1.0_9stages.bam</A>).	Nine developmental stages RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "9stages"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
28	Single-end 90 bp RNAseq reads for gasturla developmental stage from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_gastrula.bam">pelodiscus_sinensis_pelsin1.0_gastrula.bam</A>).	Gastrula RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "gastrula"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
39	All RNAseq reads provided for Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_merged.bam">pelodiscus_sinensis_pelsin1.0_merged.bam</A>).	Merged RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
29	Single-end 90 bp RNAseq reads for neurula developmental stage from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_neurula.bam">pelodiscus_sinensis_pelsin1.0_neurula.bam</A>).	Neurula RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "neurula"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
31	Paired-end 100 bp RNAseq reads for pooled developmental stages from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_pooled.bam">pelodiscus_sinensis_pelsin1.0_pooled.bam</A>).	Pooled RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "pooled"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
33	Single-end 90 bp RNAseq reads for tk11 developmental stage from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_tk11.bam">pelodiscus_sinensis_pelsin1.0_tk11.bam</A>).	tk11 RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk11"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
34	Single-end 90 bp RNAseq reads for tk13 developmental stage from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_tk13.bam">pelodiscus_sinensis_pelsin1.0_tk13.bam</A>).	tk13 RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk13"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
35	Single-end 90 bp RNAseq reads for tk15 developmental stage from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_tk15.bam">pelodiscus_sinensis_pelsin1.0_tk15.bam</A>).	tk15 RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk15"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
36	Single-end 90 bp RNAseq reads for tk17 developmental stage from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_tk17.bam">pelodiscus_sinensis_pelsin1.0_tk17.bam</A>).	tk17 RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk17"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
37	Single-end 90 bp RNAseq reads for tk23 developmental stage from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_tk23.bam">pelodiscus_sinensis_pelsin1.0_tk23.bam</A>).	tk23 RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk23"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
38	Single-end 90 bp RNAseq reads for tk7 developmental stage from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_tk7.bam">pelodiscus_sinensis_pelsin1.0_tk7.bam</A>).	tk7 RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk7"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
30	Single-end 90 bp RNAseq reads for tk9 developmental stage from Pelodiscus sinensis. Data were obtained from the <arel="external" href="http://www.riken.jp/en/">RIKEN Institute</A> and aligned to the PelSin1.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/">Ensembl FTP</A> (file:<a href="http://ftp.ensembl.org/pub/data_files/pelodiscus_sinensis/PelSin_1.0/rnaseq/pelodiscus_sinensis_pelsin1.0_tk9.bam">pelodiscus_sinensis_pelsin1.0_tk9.bam</A>).	tk9 RNASeq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "column_order": 3, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk9"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
9	Spliced RNASeq read support for gastrula developmental stage in P. sinensis.	Gastrula intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "gastrula"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
17	Annotation generated using only RNASeq data from gastrula developmental stage in P. sinensis.	Gastrula RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "gastrula"}, "type": "rnaseq", "zmenu": "RNASeq"}
27	Annotation generated using all RNASeq data for P. sinensis.	Merged RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq"}
6	Spliced RNASeq read support for neurula developmental stage in P. sinensis.	Neurula intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "neurula"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
18	Annotation generated using only RNASeq data from neurula developmental stage in P. sinensis.	Neurula RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "neurula"}, "type": "rnaseq", "zmenu": "RNASeq"}
3	Spliced RNASeq read support for P. sinensis. The data are pooled from nine developmental stages: gastrula, neurula, tk7, tk9, tk11, tk13, tk15, tk17 and tk23.	Pooled intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "pooled"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
19	Annotation generated using pooled RNASeq data for P. sinensis.	Pooled RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "pooled"}, "type": "rnaseq", "zmenu": "RNASeq"}
12	Spliced RNASeq read support for tk11 developmental stage in P. sinensis.	tk11 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk11"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
20	Annotation generated using only RNASeq data from tk11 developmental stage in P. sinensis.	tk11 RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk11"}, "type": "rnaseq", "zmenu": "RNASeq"}
5	Spliced RNASeq read support for tk13 developmental stage in P. sinensis.	tk13 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk13"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
21	Annotation generated using only RNASeq data from tk13 developmental stage in P. sinensis.	tk13 RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk13"}, "type": "rnaseq", "zmenu": "RNASeq"}
8	Spliced RNASeq read support for tk15 developmental stage in P. sinensis.	tk15 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk15"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
22	Annotation generated using only RNASeq data from tk15 developmental stage in P. sinensis.	tk15 RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk15"}, "type": "rnaseq", "zmenu": "RNASeq"}
7	Spliced RNASeq read support for tk17 developmental stage in P. sinensis.	tk17 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk17"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
23	Annotation generated using only RNASeq data from tk17 developmental stage in P. sinensis.	tk17 RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk17"}, "type": "rnaseq", "zmenu": "RNASeq"}
10	Spliced RNASeq read support for tk23 developmental stage in P. sinensis.	tk23 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk23"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
24	Annotation generated using only RNASeq data from tk23 developmental stage in P. sinensis.	tk23 RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk23"}, "type": "rnaseq", "zmenu": "RNASeq"}
1	Spliced RNASeq read support for tk7 developmental stage in P. sinensis.	tk7 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk7"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
25	Annotation generated using only RNASeq data from tk7 developmental stage in P. sinensis.	tk7 RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk7"}, "type": "rnaseq", "zmenu": "RNASeq"}
4	Spliced RNASeq read support for tk9 developmental stage in P. sinensis.	tk9 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "column_order": 2, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk9"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
26	Annotation generated using only RNASeq data from tk9 developmental stage in P. sinensis.	tk9 RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "column_order": 1, "group": "RIKEN Institute", "group_order": "1", "menu": "rnaseq", "row": "tk9"}, "type": "rnaseq", "zmenu": "RNASeq"}
15	For various species, proteins from <a rel="external" href="http://www.uniprot.org/">UniProtKB</a> are aligned to the genome with <a rel="external" href="http://genome.cshlp.org/content/14/5/988.abstract?maxtoshow=&amp%3bHITS=10&amp%3bhits=10&amp%3bRESULTFORMAT=&amp%3bandorexactfulltext=and&amp%3bsearchid=1&amp%3bFIRSTINDEX=0&amp%3bsortspec=relevance&amp%3bvolume=14&amp%3bfirstpage=988&amp%3bresourcetype=HWCIT">GeneWise</a>.	Other species proteins	1	{"protein_align_feature": {"do_not_display": "1"}}