34 For various species, proteins from UniProtKB are aligned to the genome with GeneWise. Other species proteins 1 {"protein_align_feature": {"do_not_display": "1"}} 73 BWA alignments of blood RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site blood RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "blood"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 74 Spliced-read support for blood blood intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "blood"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 71 Annotation generated from blood RNA-seq data blood RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "blood"}, "type": "rnaseq", "zmenu": "RNASeq"} 72 Spliced-read support for blood blood intron-spanning reads 1 \N 45 BWA alignments of brain RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site brain RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "brain"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 46 Spliced-read support for brain brain intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "brain"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 43 Annotation generated from brain RNA-seq data brain RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "brain"}, "type": "rnaseq", "zmenu": "RNASeq"} 44 Spliced-read support for brain brain intron-spanning reads 1 \N 57 BWA alignments of cerebellum RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site cerebellum RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "cerebellum"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 58 Spliced-read support for cerebellum cerebellum intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "cerebellum"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 55 Annotation generated from cerebellum RNA-seq data cerebellum RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "cerebellum"}, "type": "rnaseq", "zmenu": "RNASeq"} 56 Spliced-read support for cerebellum cerebellum intron-spanning reads 1 \N 117 BWA alignments of cerebral cortex RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site cerebral cortex RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "cerebral cortex"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 118 Spliced-read support for cerebral cortex cerebral cortex intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "cerebral cortex"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 115 Annotation generated from cerebral cortex RNA-seq data cerebral cortex RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "cerebral cortex"}, "type": "rnaseq", "zmenu": "RNASeq"} 116 Spliced-read support for cerebral cortex cerebral cortex intron-spanning reads 1 \N 81 BWA alignments of colon RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site colon RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "colon"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 82 Spliced-read support for colon colon intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "colon"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 79 Annotation generated from colon RNA-seq data colon RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "colon"}, "type": "rnaseq", "zmenu": "RNASeq"} 80 Spliced-read support for colon colon intron-spanning reads 1 \N 69 BWA alignments of frontal cortex RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site frontal cortex RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "frontal cortex"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 70 Spliced-read support for frontal cortex frontal cortex intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "frontal cortex"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 67 Annotation generated from frontal cortex RNA-seq data frontal cortex RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "frontal cortex"}, "type": "rnaseq", "zmenu": "RNASeq"} 68 Spliced-read support for frontal cortex frontal cortex intron-spanning reads 1 \N 109 BWA alignments of generic RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site generic RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "generic"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 110 Spliced-read support for generic generic intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "generic"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 107 Annotation generated from generic RNA-seq data generic RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "generic"}, "type": "rnaseq", "zmenu": "RNASeq"} 108 Spliced-read support for generic generic intron-spanning reads 1 \N 77 BWA alignments of heart RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site heart RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "heart"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 78 Spliced-read support for heart heart intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "heart"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 75 Annotation generated from heart RNA-seq data heart RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "heart"}, "type": "rnaseq", "zmenu": "RNASeq"} 76 Spliced-read support for heart heart intron-spanning reads 1 \N 89 BWA alignments of kidney RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site kidney RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "kidney"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 90 Spliced-read support for kidney kidney intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "kidney"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 87 Annotation generated from kidney RNA-seq data kidney RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "kidney"}, "type": "rnaseq", "zmenu": "RNASeq"} 88 Spliced-read support for kidney kidney intron-spanning reads 1 \N 49 BWA alignments of liver RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site liver RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "liver"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 50 Spliced-read support for liver liver intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "liver"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 47 Annotation generated from liver RNA-seq data liver RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "liver"}, "type": "rnaseq", "zmenu": "RNASeq"} 48 Spliced-read support for liver liver intron-spanning reads 1 \N 97 BWA alignments of lung RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site lung RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "lung"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 98 Spliced-read support for lung lung intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "lung"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 95 Annotation generated from lung RNA-seq data lung RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "lung"}, "type": "rnaseq", "zmenu": "RNASeq"} 96 Spliced-read support for lung lung intron-spanning reads 1 \N 85 BWA alignments of lymph node RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site lymph node RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "lymph node"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 86 Spliced-read support for lymph node lymph node intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "lymph node"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 83 Annotation generated from lymph node RNA-seq data lymph node RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "lymph node"}, "type": "rnaseq", "zmenu": "RNASeq"} 84 Spliced-read support for lymph node lymph node intron-spanning reads 1 \N 61 BWA alignments of merged RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site merged RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 62 Spliced-read support for merged merged intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 59 Annotation generated from merged RNA-seq data merged RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq"} 60 Spliced-read support for merged merged intron-spanning reads 1 \N 105 BWA alignments of neural crest cells RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site neural crest cells RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "neural crest cells"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 106 Spliced-read support for neural crest cells neural crest cells intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "neural crest cells"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 103 Annotation generated from neural crest cells RNA-seq data neural crest cells RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "neural crest cells"}, "type": "rnaseq", "zmenu": "RNASeq"} 104 Spliced-read support for neural crest cells neural crest cells intron-spanning reads 1 \N 53 BWA alignments of pituitary RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site pituitary RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "pituitary"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 54 Spliced-read support for pituitary pituitary intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "pituitary"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 51 Annotation generated from pituitary RNA-seq data pituitary RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "pituitary"}, "type": "rnaseq", "zmenu": "RNASeq"} 52 Spliced-read support for pituitary pituitary intron-spanning reads 1 \N 41 BWA alignments of prefrontal cortex RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site prefrontal cortex RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "prefrontal cortex"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 42 Spliced-read support for prefrontal cortex prefrontal cortex intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "prefrontal cortex"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 39 Annotation generated from prefrontal cortex RNA-seq data prefrontal cortex RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "prefrontal cortex"}, "type": "rnaseq", "zmenu": "RNASeq"} 40 Spliced-read support for prefrontal cortex prefrontal cortex intron-spanning reads 1 \N 101 BWA alignments of skeletal muscle RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site skeletal muscle RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "skeletal muscle"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 102 Spliced-read support for skeletal muscle skeletal muscle intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 99 Annotation generated from skeletal muscle RNA-seq data skeletal muscle RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle"}, "type": "rnaseq", "zmenu": "RNASeq"} 100 Spliced-read support for skeletal muscle skeletal muscle intron-spanning reads 1 \N 37 BWA alignments of spleen RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site spleen RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "spleen"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 38 Spliced-read support for spleen spleen intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "spleen"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 35 Annotation generated from spleen RNA-seq data spleen RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "spleen"}, "type": "rnaseq", "zmenu": "RNASeq"} 36 Spliced-read support for spleen spleen intron-spanning reads 1 \N 113 BWA alignments of temporal lobe RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site temporal lobe RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "temporal lobe"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 114 Spliced-read support for temporal lobe temporal lobe intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "temporal lobe"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 111 Annotation generated from temporal lobe RNA-seq data temporal lobe RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "temporal lobe"}, "type": "rnaseq", "zmenu": "RNASeq"} 112 Spliced-read support for temporal lobe temporal lobe intron-spanning reads 1 \N 93 BWA alignments of testis RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site testis RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "testis"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 94 Spliced-read support for testis testis intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "testis"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 91 Annotation generated from testis RNA-seq data testis RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "testis"}, "type": "rnaseq", "zmenu": "RNASeq"} 92 Spliced-read support for testis testis intron-spanning reads 1 \N 65 BWA alignments of thymus RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site thymus RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "thymus"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 66 Spliced-read support for thymus thymus intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "thymus"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 63 Annotation generated from thymus RNA-seq data thymus RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "thymus"}, "type": "rnaseq", "zmenu": "RNASeq"} 64 Spliced-read support for thymus thymus intron-spanning reads 1 \N