1 \N schema_type core 2 \N schema_version 113 3 \N patch patch_88_89_a.sql|schema_version 4 1 assembly.mapping scaffold:PAHARI_EIJ_v1.1|contig 5 1 assembly.mapping chromosome:PAHARI_EIJ_v1.1|contig 6 1 genebuild.id 47 8 1 assembly.coverage_depth high 4110 1 species.production_name mus_pahari 10 1 assembly.default PAHARI_EIJ_v1.1 11 1 assembly.name PAHARI_EIJ_v1.1 4071 1 species.taxonomy_id 10093 13 1 assembly.date 2012-07 73 1 repeat_featurebuild.level toplevel 74 1 dna_align_featurebuild.level toplevel 75 1 protein_align_featurebuild.level toplevel 76 1 simple_featurebuild.level toplevel 77 1 prediction_transcriptbuild.level toplevel 78 1 prediction_exonbuild.level toplevel 51 1 assembly.accession GCA_900095145.2 52 1 assembly.web_accession_source NCBI 72 1 exonbuild.level toplevel 54 1 genebuild.initial_release_date 2017-05 55 1 genebuild.last_geneset_update 2018-01 70 1 genebuild.level toplevel 57 1 genebuild.method external_annotation_import 58 1 genebuild.start_date 2017-05-Ensembl 3773 1 repeat.analysis dust 4074 1 species.display_name Shrew mouse 3711 1 species.division EnsemblVertebrates 4072 1 species.scientific_name Mus pahari 3678 1 species.stable_id_prefix MGP_PahariEiJ_ 64 1 species.strain PAHARI_EIJ 4073 1 species.url Mus_pahari 71 1 transcriptbuild.level toplevel 68 \N patch patch_89_90_a.sql|schema_version 69 \N patch patch_89_90_b.sql|remove_status 3680 1 species.common_name Shrew mouse 122 1 annotation.provider_name UCSC computational genomics laboratory 123 1 annotation.provider_url https://github.com/ucsc-mus-strain-cactus/MouseGenomesAnnotationPipeline 1071 \N patch patch_89_90_c.sql|pf_hit_name_case_sensitive 1632 \N patch patch_90_91_a.sql|schema_version 1633 \N patch patch_90_91_b.sql|align_type 1634 \N patch patch_90_91_c.sql|protein_align_type 1635 \N patch patch_90_91_d.sql|remove_external_data 4082 1 species.classification Euarchontoglires 4090 1 species.classification Sarcopterygii 3614 \N patch patch_91_92_a.sql|schema_version 3615 \N patch patch_91_92_b.sql|add_cigar_line_align_type 4162 1 xref.timestamp 2024-07-02 17:22:21 3617 \N patch patch_92_93_a.sql|schema_version 3618 \N patch patch_92_93_b.sql|biotype_table 3619 \N patch patch_92_93_c.sql|collate_index_interpro 3621 \N patch patch_93_94_a.sql|schema_version 3622 \N patch patch_93_94_b.sql|nullable_ox_analysis 3623 \N patch patch_93_94_c.sql|default_aln_type 3668 \N patch patch_94_95_a.sql|schema_version 3669 \N patch patch_94_95_b.sql|vertebrate_division_rename 4104 1 species.alias mpah 4092 1 species.classification Teleostomi 3714 \N patch patch_95_96_a.sql|schema_version 3716 \N patch patch_96_97_a.sql|schema_version 3717 \N patch patch_96_97_b.sql|biotype_so_term 3718 \N patch patch_96_97_c.sql|rnaproduct_tables 3719 \N patch patch_96_97_d.sql|add_object_type_rnaproduct 3720 \N patch patch_96_97_e.sql|add_stable_id_event_type_rnaproduct 4107 1 species.alias mus_pahari 4094 1 species.classification Vertebrata 4095 1 species.classification Craniata 3762 \N patch patch_97_98_a.sql|schema_version 3764 \N patch patch_98_99_a.sql|schema_version 4156 1 sample.location_param 4:136093846-136274674 4157 1 sample.location_text 4:136093846-136274674 4152 1 sample.gene_param MGP_PahariEiJ_G0027184 4153 1 sample.gene_text MGP_PahariEiJ_G0027184 4154 1 sample.transcript_param MGP_PahariEiJ_T0071926 4155 1 sample.transcript_text MGP_PahariEiJ_T0071926 4158 1 sample.search_text MGP_PahariEiJ_G0027184 3774 1 repeat.analysis repeatmask_repbase_rodents 3775 1 repeat.analysis trf 3776 \N patch patch_99_100_a.sql|schema_version 3777 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull 3778 \N patch patch_99_100_c.sql|alter_mapping_session_assembly_length 3779 \N patch patch_100_101_a.sql|schema_version 3780 1 assembly.provider_name 3781 1 assembly.provider_url 3782 \N patch patch_101_102_a.sql|schema_version 3783 \N patch patch_102_103_a.sql|schema_version 3784 \N patch patch_103_104_a.sql|schema_version 3785 \N patch patch_104_105_a.sql|schema_version 4160 1 sample.vep_hgvs MGP_PahariEiJ_T0022225.1:c.4C>A\\nMGP_PahariEiJ_T0074291.1:c.-207+16C>G\\nMGP_PahariEiJ_T0065488.1:c.5del 4161 1 sample.vep_vcf 1 169750526 . C A . . .\\n5 66456916 . C G . . .\\n3 112005552 . GC G . . . 3795 1 sample.vep_spdi 1:169750525:C:A\\n5:66456915:C:G\\n3:112005552:C: 4159 1 sample.vep_ensembl 1 169750526 169750526 C/A 1\\n5 66456916 66456916 C/G 1\\n3 112005553 112005553 C/- 1 3797 \N patch patch_105_106_a.sql|schema_version 4105 1 species.alias mpahari 4100 1 species.classification Metazoa 4081 1 species.classification Glires 3848 \N patch patch_106_107_a.sql|schema_version 3849 \N patch patch_106_107_b.sql|Added index for seq_region_mapping 3860 \N patch patch_107_108_a.sql|schema_version 4089 1 species.classification Dipnotetrapodomorpha 3911 \N patch patch_108_109_a.sql|schema_version 3912 \N patch patch_108_109_b.sql|Added xref source GeneCards into external_db 3923 \N patch patch_109_110_a.sql|schema_version 3924 \N patch patch_109_110_b.sql|Add IS_PAR relationship to link X- and Y-PAR genes 3925 \N patch patch_109_110_c.sql|Allow gene id to belong to multiple alt allele groups 3936 \N patch patch_110_111_a.sql|schema_version 4106 1 species.alias mus pahari 4083 1 species.classification Boreoeutheria 4084 1 species.classification Eutheria 4085 1 species.classification Theria 4086 1 species.classification Mammalia 3987 \N patch patch_111_112_a.sql|schema_version 3988 \N patch patch_111_112_b.sql|Allow meta_value to be null 4108 1 species.alias muspah 4093 1 species.classification Gnathostomata 4075 1 species.classification Mus pahari 4076 1 species.classification Murinae 4077 1 species.classification Muridae 4078 1 species.classification Muroidea 4079 1 species.classification Myomorpha 4080 1 species.classification Rodentia 4029 \N patch patch_112_113_a.sql|schema_version 4030 \N patch patch_112_113_b.sql|Ensure meta_value is not null 4099 1 species.classification Eumetazoa 4097 1 species.classification Deuterostomia 4098 1 species.classification Bilateria 4096 1 species.classification Chordata 4091 1 species.classification Euteleostomi 4087 1 species.classification Amniota 4088 1 species.classification Tetrapoda 4103 1 species.alias 10093 4101 1 species.classification Opisthokonta 4102 1 species.classification Eukaryota 4109 1 species.alias shrew mouse