1 2016-10-24 17:18:09 mt_genbank_import \N NC_027945.1 \N \N \N \N \N \N \N \N \N 2 2016-10-24 17:25:03 repeatmask_repbase_rodents \N 2016_08_29 \N \N \N /software/ensembl/bin/RepeatMasker_4_0_5/RepeatMasker -nolow -species "rodents" -engine "wublast" HiveRepeatMasker \N \N \N 3 2016-10-24 17:43:43 dust \N \N \N \N \N /software/ensembl/genebuild/usrlocalensemblbin/tcdust \N HiveDust \N \N \N 4 2016-10-24 17:44:44 trf \N \N \N \N \N /software/ensembl/genebuild/usrlocalensemblbin/trf \N HiveTRF \N \N \N 5 2016-10-24 17:45:48 eponine \N \N \N \N \N /software/jdk1.6.0_14/bin/java -epojar => /software/ensembl/genebuild/usrlocalensembllib/eponine-scan.jar, -threshold => 0.999 HiveEponine \N \N \N 6 2016-10-24 17:46:48 firstef \N \N \N \N \N /software/ensembl/genebuild/usrlocalensemblbin/firstef -repeatmasked HiveFirstEF \N \N \N 7 2016-10-24 17:55:56 cpg \N \N \N \N \N /software/ensembl/genebuild/usrlocalensemblbin/cpg \N HiveCPG \N \N \N 8 2016-10-24 17:59:00 trnascan \N \N \N \N \N /software/ensembl/genebuild/usrlocalensemblbin/tRNAscan-SE \N HiveTRNAScan \N \N \N 9 2016-10-24 17:59:59 genscan HumanIso.smat \N /software/ensembl/genebuild/usrlocalensembldata/HumanIso.smat \N \N /software/ensembl/genebuild/usrlocalensemblbin/genscan \N HiveGenscan \N \N \N 10 2016-10-25 11:20:59 uniprot \N 2017_04 /data/blastdb/Ensembl/uniprot_2016_04/uniprot_vertebrata \N \N /software/ensembl/genebuild/usrlocalensemblbin/wublastp -cpus 3 -hitdist 40 HiveBlastGenscanPep \N \N \N 11 2016-10-25 12:20:19 vertrna \N 2016_04 /data/blastdb/Ensembl/vertrna_xdformat_2016_04/embl_vertrna-1 \N \N /software/ensembl/genebuild/usrlocalensemblbin/wutblastn -cpus 3 -hitdist 40 HiveBlastGenscanDNA \N \N \N 12 2016-10-25 13:37:51 unigene \N 2016_10 /data/blastdb/Ensembl/unigene/unigene \N \N /software/ensembl/genebuild/usrlocalensemblbin/wutblastn -cpus 3 -hitdist 40 HiveBlastGenscanDNA \N \N \N 13 2017-01-16 14:30:55 ensembl \N \N \N \N \N \N \N HiveGeneBuilder \N \N \N 273 2021-07-13 17:07:01 gene3d Gene3D 4.3.0 \N InterProScan 5.52-86.0 \N \N \N \N \N \N 328 2024-06-17 03:47:32 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 256 2021-01-10 17:50:18 pirsf PIRSF 3.10 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 327 2024-06-17 03:47:13 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 329 2024-06-17 03:48:05 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 265 2021-01-10 18:06:33 seg Seg \N \N seg \N \N \N \N \N \N \N 332 2024-06-17 03:54:49 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 18 2016-10-27 07:55:00 ncrna \N \N /data/blastdb/Ensembl/ncrna_2016_05// \N \N /software/ensembl/bin/cmsearch_1.0 \N HiveInfernal \N \N \N 19 2016-10-27 07:08:50 rfamblast \N 2016_05 /data/blastdb/Ensembl/ncrna_2016_05//filtered.fasta \N \N wublastn W=12 B=10000 V=10000 -hspmax 0 -gspmax 0 -kap HiveBlastRfam \N \N \N 20 2016-10-27 06:57:39 blastmirna \N 2016_05 /data/blastdb/Ensembl/ncrna_2016_05//mouse_mirnas.fa \N \N wublastn HiveBlastmiRNA \N \N \N 21 2017-02-09 16:47:43 other_protein uniprot uniprot_apr_2016 \N \N \N \N \N \N \N \N \N 22 2017-02-15 14:40:29 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 23 2017-02-15 14:40:29 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 24 2017-02-15 14:41:39 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 264 2021-01-10 18:05:12 tmhmm TMHMM 2.0c \N InterProScan 5.48-83.0 \N \N \N \N \N \N 259 2021-01-10 17:54:30 superfamily SuperFamily 1.75 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 333 2024-06-17 03:55:25 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 330 2024-06-17 03:48:55 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 260 2021-01-10 17:58:38 tigrfam TIGRfam 15.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 255 2021-01-10 17:50:10 prints PRINTS 42.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 267 2021-01-10 18:10:58 ncoils ncoils 2.2.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 312 2023-06-17 22:14:09 smart Smart 9.0 \N InterProScan 5.62-94.0 \N \N \N \N \N \N 43 2019-01-10 00:00:00 shortnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 44 2019-01-10 00:00:00 codingdensity \N \N \N \N \N \N \N \N \N \N \N 45 2019-01-10 00:00:00 percentagerepeat \N \N \N \N \N \N \N \N \N \N \N 46 2019-01-10 00:00:00 percentgc \N \N \N \N \N \N \N \N \N \N \N 47 2019-01-10 00:00:00 longnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 48 2019-01-10 00:00:00 pseudogenedensity \N \N \N \N \N \N \N \N \N \N \N 334 2024-07-22 10:07:36 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 336 2024-07-25 12:41:18 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 300 2023-01-25 15:12:22 cdd CDD 3.20 \N InterProScan 5.60-92.0 \N \N \N \N \N \N 258 2021-01-10 17:51:07 sfld SFLD 4 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 261 2021-01-10 18:01:34 mobidblite MobiDBLite 2.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 263 2021-01-10 18:04:34 signalp SignalP 4.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 335 2024-07-25 03:35:27 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N 331 2024-06-17 03:54:12 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N