1	2009-07-27 12:58:39	repeatmask	repbase	15-04-2009	repbase	RepeatMasker	3.2.7	/lustre/work1/ensembl/jhv/bin/RepeatMasker_3_2_7/RepeatMasker	-species mammal -s	RepeatMasker	\N	RepeatMasker	Repeat
2	2009-07-27 12:58:39	unigene	uniuni	\N	uniuni	wutblastn	\N	wutblastn	-cpus => 1, -hitdist => 40	BlastGenscanDNA	\N	\N	\N
3	2009-07-27 12:58:39	genscan	HumanIso.smat	\N	HumanIso.smat	\N	\N	genscan	\N	Genscan	\N	\N	\N
4	2009-07-27 12:58:39	trf	\N	\N	\N	\N	\N	trf	\N	TRF	\N	\N	\N
5	2009-07-27 12:58:39	vertrna	embl_vertrna	\N	embl_vertrna	wutblastn	\N	wutblastn	-cpus => 1, -hitdist => 40	BlastGenscanDNA	\N	\N	\N
6	2009-07-27 12:58:39	uniprot	uniprot	\N	uniprot	wublastp	\N	wublastp	-cpus => 1, -hitdist => 40	BlastGenscanPep	\N	\N	\N
7	2009-07-27 12:58:39	dust	\N	\N	\N	dust	1	tcdust	\N	Dust	\N	dust	dust
8	2009-07-27 12:58:39	cpg	cpg	\N	\N	cpg	\N	cpg	\N	CPG	\N	cpg	cpg_island
9	2009-07-27 12:58:39	eponine	Eponine	\N	\N	eponine-scan	1	/vol/software/linux-x86_64/jdk1.6.0_01/bin/java	-epojar => /usr/local/ensembl/lib/eponine-scan.jar, -threshold => 0.999	EponineTSS	\N	Eponine	TSS
10	2009-07-27 12:58:39	trnascan	trna	\N	\N	tRNAscan-SE	1.23	\N	\N	tRNAscan_SE	\N	tRNAscan	tRNA
269	2010-07-04 13:45:32	percentagerepeat	\N	\N	\N	repeat_coverage_calc.pl	\N	\N	\N	\N	\N	repeat_coverage_calc.pl	density
290	2011-10-24 14:17:25	percentgc	\N	\N	\N	percent_gc_calc.pl	\N	\N	\N	\N	\N	percent_gc_calc.pl	density
45	2009-08-05 14:11:26	human_one2one_mus_orth	\N	\N	\N	\N	\N	\N	\N	BlastMiniGenewise	\N	\N	\N
47	2009-08-06 16:32:44	mus_one2one_human_orth	\N	\N	\N	\N	\N	\N	\N	BlastMiniGenewise	\N	\N	\N
508	2021-01-10 13:37:57	signalp	SignalP	4.1	\N	InterProScan	5.48-83.0	\N	\N	\N	\N	\N	\N
506	2021-01-10 13:36:43	ncoils	ncoils	2.2.1	\N	InterProScan	5.48-83.0	\N	\N	\N	\N	\N	\N
574	2024-06-17 03:36:11	pfscan	Prosite_profiles	2023_05	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
502	2021-01-10 13:33:45	sfld	SFLD	4	\N	InterProScan	5.48-83.0	\N	\N	\N	\N	\N	\N
552	2023-06-17 22:17:42	smart	Smart	9.0	\N	InterProScan	5.62-94.0	\N	\N	\N	\N	\N	\N
232	2009-09-02 09:34:37	ensembl	\N	\N	\N	\N	\N	\N	\N	GeneBuilder	\N	\N	\N
505	2021-01-10 13:36:15	superfamily	SuperFamily	1.75	\N	InterProScan	5.48-83.0	\N	\N	\N	\N	\N	\N
575	2024-06-17 03:37:12	scanprosite	Prosite_patterns	2023_05	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
507	2021-01-10 13:37:54	mobidblite	MobiDBLite	2.0	\N	InterProScan	5.48-83.0	\N	\N	\N	\N	\N	\N
573	2024-06-17 03:36:08	pfam	Pfam	37.0	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
500	2021-01-10 13:31:15	prints	PRINTS	42.0	\N	InterProScan	5.48-83.0	\N	\N	\N	\N	\N	\N
577	2024-06-17 03:38:17	interpro2go	InterPro2GO	2024-05-29	\N	interpro2go	\N	\N	\N	\N	\N	\N	\N
509	2021-01-10 13:38:52	tmhmm	TMHMM	2.0c	\N	InterProScan	5.48-83.0	\N	\N	\N	\N	\N	\N
510	2021-01-10 13:40:12	seg	Seg	\N	\N	seg	\N	\N	\N	\N	\N	\N	\N
251	2009-09-03 17:09:20	ncrna	Rfam	9	/lustre/scratch103/ensembl/mr6/elephant/ncRNA/BLAST	cmsearch	\N	/software/ensembl/bin/cmsearch_0.72	\N	Bio::EnsEMBL::Analysis::RunnableDB::Infernal	\N	ensembl	gene
252	2009-09-03 17:09:20	blastmirna	all_mirnas.fa	\N	/lustre/scratch103/ensembl/mr6/elephant/ncRNA/BLAST/all_mirnas.fa	wublastn	\N	wublastn	\N	Bio::EnsEMBL::Analysis::RunnableDB::BlastmiRNA	\N	ensembl	gene
253	2009-09-03 17:09:20	rfamblast	Rfam	\N	/lustre/scratch103/ensembl/mr6/elephant/ncRNA/BLAST/high_copy.fasta	wublastn	\N	wublastn	lowcopy => /lustre/scratch103/ensembl/mr6/elephant/ncRNA/BLAST/low_copy.fasta	Bio::EnsEMBL::Analysis::RunnableDB::BlastRfam	\N	ensembl	gene
85	2009-09-07 15:28:48	other_protein	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
254	2009-09-09 10:26:31	xrefexoneratedna	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
255	2009-09-09 10:26:31	xrefexonerateprotein	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
289	2011-09-27 14:11:41	mt_genbank_import	\N	NC_000934.1	http://www.ncbi.nlm.nih.gov/nuccore/NC_000934	\N	\N	\N	\N	\N	\N	\N	\N
291	2013-09-30 17:11:53	xrefchecksum	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
578	2024-07-22 10:07:54	goa_import	GO	\N	\N	goa_import	\N	\N	\N	\N	\N	\N	\N
580	2024-07-25 12:30:05	xref_projection	\N	\N	\N	xref_projection	\N	\N	\N	\N	\N	\N	\N
544	2023-01-25 12:16:13	cdd	CDD	3.20	\N	InterProScan	5.60-92.0	\N	\N	\N	\N	\N	\N
516	2021-07-13 17:05:23	gene3d	Gene3D	4.3.0	\N	InterProScan	5.52-86.0	\N	\N	\N	\N	\N	\N
571	2024-06-17 03:33:04	hamap	HAMAP	2023_05	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
572	2024-06-17 03:34:53	hmmpanther	PANTHER	18.0	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
499	2021-01-10 13:29:59	pirsf	PIRSF	3.10	\N	InterProScan	5.48-83.0	\N	\N	\N	\N	\N	\N
504	2021-01-10 13:35:21	tigrfam	TIGRfam	15.0	\N	InterProScan	5.48-83.0	\N	\N	\N	\N	\N	\N
579	2024-07-25 11:59:30	alphafold	alphafold	4	/hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv	\N	\N	\N	\N	\N	\N	\N	\N
576	2024-06-17 03:38:10	ncbifam	NCBIfam	14.0	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N