16 Brain PacBio long reads from ENA aligned to the genome using Minimap2 Brain PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 1 Alignment of species-specific cDNAs to the genome. cDNA alignment 1 {"default": {"contigviewbottom": "stack"}, "gene": {"do_not_display": 1}, "type": "cdna"} 4 Embryo day five PacBio long reads from ENA aligned to the genome using Minimap2 Embryo day five PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 6 Embryo day one PacBio long reads from ENA aligned to the genome using Minimap2 Embryo day one PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 3 Embryo day seven PacBio long reads from ENA aligned to the genome using Minimap2 Embryo day seven PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 5 Embryo day three PacBio long reads from ENA aligned to the genome using Minimap2 Embryo day three PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 21 Female ovary PacBio long reads from ENA aligned to the genome using Minimap2 Female ovary PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 18 Macrophage PacBio long reads from ENA aligned to the genome using Minimap2 Macrophage PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 19 Male cerebellum 15dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male cerebellum 15dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 28 Male cerebellum neonate PacBio long reads from ENA aligned to the genome using Minimap2 Male cerebellum neonate PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 31 Male hindbrain 8dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male hindbrain 8dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 32 Male hindlimb muscle 15dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male hindlimb muscle 15dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 10 Male hindlimb muscle 8dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male hindlimb muscle 8dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 22 Male hindlimb muscle neonate PacBio long reads from ENA aligned to the genome using Minimap2 Male hindlimb muscle neonate PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 7 Male kidney 15dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male kidney 15dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 8 Male kidney neonate PacBio long reads from ENA aligned to the genome using Minimap2 Male kidney neonate PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 23 Male liver 15dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male liver 15dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 17 Male liver 8dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male liver 8dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 27 Male liver neonate PacBio long reads from ENA aligned to the genome using Minimap2 Male liver neonate PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 25 Male lung 15dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male lung 15dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 29 Male lung 8dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male lung 8dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 12 Male lung neonate PacBio long reads from ENA aligned to the genome using Minimap2 Male lung neonate PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 9 Male mesonephros 8dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male mesonephros 8dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 24 Male skin of back 15dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male skin of back 15dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 11 Male skin of back 8dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male skin of back 8dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 30 Male skin of back neonate PacBio long reads from ENA aligned to the genome using Minimap2 Male skin of back neonate PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 26 Male small intestine 15dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male small intestine 15dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 13 Male small intestine 8dpf PacBio long reads from ENA aligned to the genome using Minimap2 Male small intestine 8dpf PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 15 Male small intestine neonate PacBio long reads from ENA aligned to the genome using Minimap2 Male small intestine neonate PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 20 Male testes PacBio long reads from ENA aligned to the genome using Minimap2 Male testes PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"} 2 RefSeq gene models from NCBI RefSeq using the GFF3 files available from the NCBI FTP site. RefSeq GFF3 annotation import 1 {"label_key": "[biotype] [display_label]", "colour_key": "[logic_name]", "zmenu": "RefSeq"} 14 Spleen PacBio long reads from ENA aligned to the genome using Minimap2 Spleen PacBio lond reads 1 {"colour_key": "long_reads_isoseq", "label_key": "[biotype] [display_label]", "zmenu": "CLS", "type": "longreads"}