1 MULTI-NATIONAL \N samples that were designed to maximize measures of heterogeneity or sample human diversity in a global fashion. Examples OEFNER|GLOBAL and CEPH repository. 0 \N UNDISPLAYABLE \N 2 NORTH/EAST AFRICA & MIDDLE EAST \N samples collected from North Africa (including Sahara desert), East Africa (south to Equator), Levant, Persian Gulf. 0 \N UNDISPLAYABLE \N 3 WEST AFRICA \N Sub-Saharan Nations bordering Atlantic north of Congo River, and Central/Southern Atlantic Island Nations. 0 \N UNDISPLAYABLE \N 4 CENTRAL/SOUTH AFRICA \N Nations south of Equator, Madagascar & neighboring Island Nations. 0 \N UNDISPLAYABLE \N 5 EUROPE \N Samples from Europe north and west of Caucasus Mountains, Scandinavia, Atlantic Islands. 0 \N UNDISPLAYABLE \N 6 EAST ASIA \N Samples from Eastern and South Eastern Mainland Asia, Northern Pacific Island Nations. 0 \N UNDISPLAYABLE \N 7 PACIFIC \N Samples from Australia, New Zealand, Central and Southern Pacific Islands, Southeast Asian Peninsular/Island Nations. 0 \N UNDISPLAYABLE \N 8 CENTRAL ASIA \N Samples from Russia and satellite Republics, Nations bordering Indian Ocean between East Asia and Persian Gulf regions. 0 \N UNDISPLAYABLE \N 9 NORTH AMERICA \N All samples north of Tropic of Cancer. This would include defined samples of U.S. Caucasians, African Americans and Hispanics and NCBI|NIHPDR. 0 \N UNDISPLAYABLE \N 10 CENTRAL/SOUTH AMERICA \N Samples from Mainland Central and South America, Island Nations of western Atlantic, Gulf of Mexico and Eastern Pacific. 0 \N UNDISPLAYABLE \N 11 UNKNOWN \N Samples with unknown geographic provenience that are not global in nature. 0 \N UNDISPLAYABLE \N 12 U.S. Beef \N For ex. population id 'MARC_Beef_Cattle_Diversity_Panel_V2.1'belongs to this class. 0 \N UNDISPLAYABLE \N 13 U.S. Dairy \N For ex. 'BARC_Dairy_Cattle_Diversity_Panel_V1.0' and 'MARC_Dairy_Cattle_Panel_V1.5'. 0 \N UNDISPLAYABLE \N 14 AFR \N African, 1000Genome Super Population 0 \N UNDISPLAYABLE \N 15 AMR \N Ad Mixed American, 1000Genome Super Population 0 \N UNDISPLAYABLE \N 16 ASN \N East Asian, 1000Genome Super Population 0 \N UNDISPLAYABLE \N 17 EUR \N European, 1000Genome Super Population 0 \N UNDISPLAYABLE \N 18 SAN \N South Asian, 1000Genome Super Population 0 \N UNDISPLAYABLE \N 19 PPPSRU:PPPSRU-CHICKENS \N chickens including red jungle fowl, leghorn and broilers 0 \N UNDISPLAYABLE \N 20 UMIST_HUBBARD_GROUP:Chick1 \N Over 1750 individuals from the following strains:, 1) Inbred Compton line 15I, 2) Outbred White leghorn Hisex (layer), 3) Outbred Ross 308 (broiler), 4) Outbred Lohman Brown Hybrid (layer), 5) Outbred Bantam (layer), 6) Outbred Isa Brown (layer) 0 \N UNDISPLAYABLE \N 21 BGI:RBLS 4 4 chicken subspecies, this file contains the SNPs between RJF ,and Silkie.,1.RJF (Red Jungle Fowl) from St. Louis.,2.Broiler (White Plymouth Rock) from BGI,3.Layer (White Leghorn) from BGI,4.Silkie (A local Chinese strain) from BGI 0 \N UNDISPLAYABLE \N 22 UUPDK:BBSRC_EST_POP \N Mainly white leghorn, also a Bantam breed and several Ross 308 mixtures 0 \N UNDISPLAYABLE \N 23 AGB-LAB-SCAU:MB \N 6chicken individuals DNA from Sichuan province and Guangdong province. 0 \N UNDISPLAYABLE \N 24 SKLA:huang-1 \N \N 0 \N UNDISPLAYABLE \N 25 CFG-UPPSALA:chick_wgs_reseq_paper_population \N 10 different libraries from three groups consisting of,A - 8 pools of domestic chickens,WLA - White Leghorn Line 13 developed at SLU (11 males),WLB - White Leghorn commercial line (8 males),OS - Obese strain of White Leghorn (10 males),RIR - Rhode Island Red (Hubbard-ISA AvianDiv) (8 males),CB1 - commercial broilers (Ross 308) (10 males),CB2 - commercial broilers (Hubbard-ISA AvianDiv) (10 females),High - High growth White Plymouth Rock line from VT (7 males, 4 females),Low - Low growth White Plymouth Rock line from VT (7 males, 4 females),B - 1 pool of red junglefowl,RJF - Red junglefowl from 2 Swedish zoo populations (8 males),C - 1 individual red junglefowl,RJF-ref - UCD001 reference individual (1 female) 0 \N UNDISPLAYABLE \N 26 PENGCAU:dongxiang chicken \N 10 chickens DNA from Dongxiang town, JiangXi province, China,following populations:,5 brown-shelled chickens,5 blue-shelled chickens 0 \N UNDISPLAYABLE \N 27 ANIM_GENET_BREEDING:Pools-1 \N Gallus domestiaus,Sichuan Mountainous Black-boned chicken, Dahen high-quality chicken 0 \N UNDISPLAYABLE \N 28 LAGB:Dahen-1 \N two chicken individulas DNA from the following populaitons:,1:S01,2:S05 0 \N UNDISPLAYABLE \N 29 ROSLINAVREP:LOH2001 \N Rhode Island Red 0 \N UNDISPLAYABLE \N 30 HY-LINEINT:Mixed_chicken_breeds \N 30-131 individual chickens from the following breeds,White Leghorn, egg type,WhitePlymouth Rock, egg type,Rhode Island Red, egg type 0 \N UNDISPLAYABLE \N 31 CAGVT:Group_1 \N DNA was used from a diversity panel of 79 local chickens of Nigerian origin which include naked neck. Frizzle feather and normal feather strains 0 \N UNDISPLAYABLE \N 32 DELANY:UCD-Dp1.003_Wg2.331_Co.003 \N 3 developmental mutant congenic chicken genetic lines from the University of California, Davis,1: UCD-Coloboma.003,2: UCD-Diplopodia-1.003,3: UCD-Wingless-2.331 0 \N UNDISPLAYABLE \N 33 DELANY:UCD-Co.003 \N UCD-Coloboma.003 mutant (Z-/W) samples (n=28); UCD-003 (Z+/Z+) samples (n=2) 0 \N UNDISPLAYABLE \N 34 DELANY:UCD-Dp-1.003 \N UCD-Diplopodia-1 mutant (-/-) samples (n=20); UCD-003 (+/+) samples (n=2) 0 \N UNDISPLAYABLE \N 35 DELANY:UCD-Wg2.331 \N UCD-Wingless-2 mutant (-/-) samples (n=6); Non-carrier Wg2 (+/+) samples (n=2) 0 \N UNDISPLAYABLE \N 36 LBA_ESALQ:EmbrapaF2_chicken \N Twenty-eight chickens (parental generation) were sequenced from a F2 Brazilian resource population. The resource,population was developed from the crossbreeding of a broiler male (TT), and a layer line (CC). EMBRAPA Swine and Poultry,Research Centre (Brazil) developed both pure lines. 0 \N UNDISPLAYABLE \N 37 LAGB:Erlang mountain \N two chicken individulas DNA from the following populaitons:,1:SD02,2:SD03 0 \N UNDISPLAYABLE \N 38 HPRC:Huang-Lpin1 \N \N 0 \N UNDISPLAYABLE \N 39 HPRC:Huang-Lmbr1 \N \N 0 \N UNDISPLAYABLE \N 40 ROSLINAVREP:AIL_F16 \N Cross of White leghorn and meat type hen 0 \N UNDISPLAYABLE \N 41 ANIMALGENETICSLAB:CC_TT \N 15 chicken (Gallus gallus) individuals DNA from the,following populations:,10 samples: TT population,5 samples: CC population 0 \N UNDISPLAYABLE \N 42 LILAB_BRCAS:TCC-L2 \N 0 \N UNDISPLAYABLE \N 43 LILAB_BRCAS:Silkie \N \N 0 \N UNDISPLAYABLE \N 44 CNU_JH_AMG:Korean_chicken_G53 \N This population includes 1 Korean chicken with gray-brown feather. 0 \N UNDISPLAYABLE \N 45 YAUVETMI:Southern Yunnan \N 62 red junglefowls gathered from Southern Yunnan Province 0 \N UNDISPLAYABLE \N 46 DWBURT:Broiler \N This population includes 4 broiler lines 0 \N UNDISPLAYABLE \N 47 DWBURT:Layer \N This population includes 11 layer lines 0 \N UNDISPLAYABLE \N 48 DWBURT:J-Line \N This is an unselected experimental Brown Leghorn Layer line from the Roslin Institute 0 \N UNDISPLAYABLE \N 49 DWBURT:Line-7 \N This is an inbred layer line from the Pirbright Institute 0 \N UNDISPLAYABLE \N 50 DWBURT:P-Line \N This is an inbred layer line from the Pirbright Institute 0 \N UNDISPLAYABLE \N 51 DWBURT:Wellcome-Line \N This is an inbred layer line from the Pirbright Institute 0 \N UNDISPLAYABLE \N 52 DWBURT:N-Line \N This is an inbred layer line from the Pirbright Institute 0 \N UNDISPLAYABLE \N 53 DWBURT:Line-15I \N This is an inbred layer line from the Pirbright Institute 0 \N UNDISPLAYABLE \N 54 DWBURT:Zero-Line \N This is an inbred layer line from the Pirbright Institute 0 \N UNDISPLAYABLE \N 55 DWBURT:Line-6 \N This is an inbred layer line from the Pirbright Institute 0 \N UNDISPLAYABLE \N 56 DWBURT:C-Line \N This is an inbred layer line from the Pirbright Institute 0 \N UNDISPLAYABLE \N 57 SXAULST:East Asia \N Thirty male yellow meat-type chickens from the 22nd generation of two strains (N202 and N301) were reared indoors and managed in a routine way. Both two strains were offered by Guangdong Wens Nanfang Poultry Breeding Co. Ltd., China.East Asia. 0 \N UNDISPLAYABLE \N 58 MYSEQ_SNP:Gushi chick \N Chicken individuals DNA from the Gushi chick 0 \N UNDISPLAYABLE \N 59 ANIMALGENETICSLAB??:CC_TT \N 15 chicken (Gallus gallus) individuals DNA from the following populations:10 samples: TT population;5 samples: CC population 0 \N UNDISPLAYABLE \N 60 SDND:SDND-Yuan \N This population includes 510 participants of White Recessive Rock 0 \N UNDISPLAYABLE \N 61 SDAU:SDAU-Yuan \N This population includes 510 participants of White Recessive Rock 0 \N UNDISPLAYABLE \N 62 LAB_ESALQ:EmbrapaF2_chicken \N Twenty-eight chickens (parental generation) were sequenced from a F2 Brazilian resource population. The resource,population was developed from the crossbreeding of a broiler male (TT), and a layer line (CC). EMBRAPA Swine and Poultry,Research Centre (Brazil) developed both pure lines. 0 \N UNDISPLAYABLE \N 63 SGL:Dongxiang blue-shelled \N This population includes 252 Chinese Dongxiang blue-shelled chickens 0 \N UNDISPLAYABLE \N 64 SGL:White Leghorn \N This population includes 252 White Leghorn chickens 0 \N UNDISPLAYABLE \N 65 HU_LEWI_MBZ:New_Hampshire \N New Hampshire inbred line is an inbred line of the dual purpose chicken. This inbred population have been selected for more than 10 generations. In this experiment, only one male (No. 8425) was sequenced. 0 \N UNDISPLAYABLE \N 66 HU_LEWI_MBZ:White_Leghorn \N White Leghorn inbred line is an inbred line which is selected for low egg laying performance. Here, two females (No. 6929 and 6954) were sequenced. 0 \N UNDISPLAYABLE \N 67 NOVOGENE:Globally \N Globally 0 \N UNDISPLAYABLE \N 68 GENOMICSBALICE:POLISH \N This population includes samples of blood 300 broiler chickens 0 \N UNDISPLAYABLE \N