1 2020-02-11 17:06:49 repeatmask_repbase_teleost \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker -nolow -species "Teleostei" -engine "crossmatch" HiveRepeatMasker \N \N \N 2 2020-02-12 12:21:11 dust \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/dustmasker \N HiveDust \N \N \N 3 2020-02-12 12:24:35 trf \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/trf \N HiveTRF \N \N \N 4 2020-02-12 12:35:19 eponine \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/java -epojar => /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/opt/eponine/libexec/eponine-scan.jar, -threshold => 0.999 HiveEponine \N \N \N 5 2020-02-12 12:35:26 cpg \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cpg_lh \N HiveCPG \N \N \N 6 2020-02-12 12:36:02 trnascan \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tRNAscan-SE \N HiveTRNAScan \N \N \N 7 2020-02-12 12:58:09 genscan HumanIso.smat \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/share/HumanIso.smat \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/genscan \N HiveGenscan \N \N \N 8 2020-02-25 12:18:56 ensembl \N \N \N \N \N \N \N \N \N \N \N 24 2020-04-01 13:53:39 cdna_alignment_core \N \N \N \N \N \N \N \N \N \N \N 13 2020-02-13 04:14:37 ncrna \N \N /hps/nobackup2/production/ensembl/genebuild/production/fish/cyclopterus_lumpus/GCA_009769545.1//Rfam.cm \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cmsearch \N HiveCMSearch \N \N /hps/nobackup2/production/ensembl/genebu 15 2020-02-13 04:20:46 blastmirna \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/mirbase_22/all_mirnas.fa \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn -num_threads 3 HiveBlastmiRNA \N \N \N 21 2020-02-26 12:03:00 other_protein uniprot \N \N \N \N \N \N \N \N \N \N 23 2020-04-01 13:53:39 rnaseq_intron_support \N \N \N \N \N \N \N \N \N \N \N 25 \N rfamcmsearch \N 14.0 /hps/nobackup2/production/ensembl/genebuild/production/fish/nothobranchius_furzeri \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cmsearch \N HiveCMSearch \N \N \N 26 2020-04-08 16:21:23 codingdensity \N \N \N \N \N \N \N \N \N \N \N 27 2020-04-08 16:21:23 shortnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 28 2020-04-08 16:21:28 percentgc \N \N \N \N \N \N \N \N \N \N \N 29 2020-04-08 16:21:54 pseudogenedensity \N \N \N \N \N \N \N \N \N \N \N 30 2020-04-08 16:21:58 longnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 31 2020-04-08 16:22:25 percentagerepeat \N \N \N \N \N \N \N \N \N \N \N 32 2020-04-08 17:51:29 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 33 2020-04-08 17:51:29 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 34 2020-04-08 17:51:32 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 176 2023-01-25 11:58:44 cdd CDD 3.20 \N InterProScan 5.60-92.0 \N \N \N \N \N \N 144 2021-07-13 17:12:21 gene3d Gene3D 4.3.0 \N InterProScan 5.52-86.0 \N \N \N \N \N \N 209 2024-06-17 03:34:01 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 210 2024-06-17 03:34:11 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 211 2024-06-17 03:35:21 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 212 2024-06-17 03:37:53 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 126 2021-01-10 14:01:20 pirsf PIRSF 3.10 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 127 2021-01-10 14:02:50 prints PRINTS 42.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 213 2024-06-17 03:39:03 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 217 2024-07-01 15:35:33 SignalP_GRAM_N SignalP_GRAM_NEGATIVE 4.1 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 128 2021-01-10 14:02:51 sfld SFLD 4 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 191 2023-06-17 22:11:44 smart Smart 9.0 \N InterProScan 5.62-94.0 \N \N \N \N \N \N 131 2021-01-10 14:07:03 superfamily SuperFamily 1.75 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 132 2021-01-10 14:07:08 tigrfam TIGRfam 15.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 133 2021-01-10 14:08:19 mobidblite MobiDBLite 2.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 137 2021-01-10 14:12:16 seg Seg \N \N seg \N \N \N \N \N \N \N 136 2021-01-10 14:12:16 ncoils ncoils 2.2.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 135 2021-01-10 14:08:53 tmhmm TMHMM 2.0c \N InterProScan 5.48-83.0 \N \N \N \N \N \N 134 2021-01-10 14:08:23 signalp SignalP 4.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 220 2024-07-22 10:08:14 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 223 2024-07-25 12:55:53 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 221 2024-07-23 11:34:53 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N 214 2024-06-17 03:39:06 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 219 2024-07-01 15:35:34 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 216 2024-07-01 15:35:33 Phobius Phobius 1.01 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 218 2024-07-01 15:35:33 SignalP_GRAM_P SignalP_GRAM_POSITIVE 4.1 \N InterProScan 5.68-100.0 \N \N \N \N \N \N