25 Spliced RNASeq read support for long-tailed chinchilla in SRR391661, SRR391661, SRR445753, SRR445753, SRR396749, SRR396749, SRR391670, SRR391670, Chinchilla lanigera Blood intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "blood"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 16 Annotation generated using only RNASeq data from long-tailed chinchilla SRR391661, SRR391661, SRR445753, SRR445753, SRR396749, SRR396749, SRR391670, SRR391670, tissue. Chinchilla lanigera Blood RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "blood"}, "type": "rnaseq", "zmenu": "RNASeq"} 24 Spliced RNASeq read support for long-tailed chinchilla for SRR391661, SRR391661, SRR445753, SRR445753, SRR396749, SRR396749, SRR391670, SRR391670, . Chinchilla lanigera Blood intron-spanning reads 1 \N 27 Spliced RNASeq read support for long-tailed chinchilla in SRR396746, SRR396746, SRR391676, SRR391676, SRR391659, SRR391659, Chinchilla lanigera Brain intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "brain"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 15 Annotation generated using only RNASeq data from long-tailed chinchilla SRR396746, SRR396746, SRR391676, SRR391676, SRR391659, SRR391659, tissue. Chinchilla lanigera Brain RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "brain"}, "type": "rnaseq", "zmenu": "RNASeq"} 26 Spliced RNASeq read support for long-tailed chinchilla for SRR396746, SRR396746, SRR391676, SRR391676, SRR391659, SRR391659, . Chinchilla lanigera Brain intron-spanning reads 1 \N 47 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.BI.Blood.1.bam). Chinchilla lanigera Blood RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "blood"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 48 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.BI.Brain.1.bam). Chinchilla lanigera Brain RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "brain"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 49 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.BI.heart.1.bam). Chinchilla lanigera heart RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "heart"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 50 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.BI.Kidney.1.bam). Chinchilla lanigera Kidney RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "kidney"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 51 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.BI.Liver.1.bam). Chinchilla lanigera Liver RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "liver"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 52 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.BI.Lungs.1.bam). Chinchilla lanigera Lungs RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "lungs"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 53 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.merged.1.bam). Chinchilla lanigera merged RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 54 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.BI.Ovary.1.bam). Chinchilla lanigera Ovary RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "ovary"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 55 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.BI.Skin.1.bam). Chinchilla lanigera Skin RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "skin"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 56 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.BI.Testis.1.bam). Chinchilla lanigera Testis RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "testis"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 57 Paired-end 101 bp RNAseq reads from a long-tailed chinchilla. Data were obtained from GEO and aligned to the ChiLan1.0 assembly using BWA. Download this BAM file from the Ensembl FTP (file:ChiLan1.0.BI.Trachea.1.bam). Chinchilla lanigera Trachea RNAseq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "trachea"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 29 Spliced RNASeq read support for long-tailed chinchilla in SRR391660, SRR391660, SRR396744, SRR396744, SRR391673, SRR391673, SRR388767, SRR388767, SRR388769, SRR388769, SRR388768, SRR388768, Chinchilla lanigera heart intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "heart"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 21 Annotation generated using only RNASeq data from long-tailed chinchilla SRR391660, SRR391660, SRR396744, SRR396744, SRR391673, SRR391673, SRR388767, SRR388767, SRR388769, SRR388769, SRR388768, SRR388768, tissue. Chinchilla lanigera heart RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "heart"}, "type": "rnaseq", "zmenu": "RNASeq"} 28 Spliced RNASeq read support for long-tailed chinchilla for SRR391660, SRR391660, SRR396744, SRR396744, SRR391673, SRR391673, SRR388767, SRR388767, SRR388769, SRR388769, SRR388768, SRR388768, . Chinchilla lanigera heart intron-spanning reads 1 \N 31 Spliced RNASeq read support for long-tailed chinchilla in SRR391668, SRR391668, SRR391665, SRR391665, SRR396745, SRR396745, Chinchilla lanigera Kidney intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "kidney"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 20 Annotation generated using only RNASeq data from long-tailed chinchilla SRR391668, SRR391668, SRR391665, SRR391665, SRR396745, SRR396745, tissue. Chinchilla lanigera Kidney RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "kidney"}, "type": "rnaseq", "zmenu": "RNASeq"} 30 Spliced RNASeq read support for long-tailed chinchilla for SRR391668, SRR391668, SRR391665, SRR391665, SRR396745, SRR396745, . Chinchilla lanigera Kidney intron-spanning reads 1 \N 33 Spliced RNASeq read support for long-tailed chinchilla in SRR391669, SRR391669, SRR391663, SRR391663, SRR396748, SRR396748, Chinchilla lanigera Liver intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "liver"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 22 Annotation generated using only RNASeq data from long-tailed chinchilla SRR391669, SRR391669, SRR391663, SRR391663, SRR396748, SRR396748, tissue. Chinchilla lanigera Liver RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "liver"}, "type": "rnaseq", "zmenu": "RNASeq"} 32 Spliced RNASeq read support for long-tailed chinchilla for SRR391669, SRR391669, SRR391663, SRR391663, SRR396748, SRR396748, . Chinchilla lanigera Liver intron-spanning reads 1 \N 35 Spliced RNASeq read support for long-tailed chinchilla in SRR391666, SRR391666, SRR396743, SRR396743, SRR396750, SRR396750, Chinchilla lanigera Lungs intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "lungs"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 23 Annotation generated using only RNASeq data from long-tailed chinchilla SRR391666, SRR391666, SRR396743, SRR396743, SRR396750, SRR396750, tissue. Chinchilla lanigera Lungs RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "lungs"}, "type": "rnaseq", "zmenu": "RNASeq"} 34 Spliced RNASeq read support for long-tailed chinchilla for SRR391666, SRR391666, SRR396743, SRR396743, SRR396750, SRR396750, . Chinchilla lanigera Lungs intron-spanning reads 1 \N 37 Spliced RNASeq read support for long-tailed chinchilla Chinchilla lanigera merged intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 17 Annotation generated using only RNASeq data from long-tailed chinchilla Chinchilla lanigera merged RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq"} 36 Spliced RNASeq read support for long-tailed chinchilla Chinchilla lanigera merged intron-spanning reads 1 \N 39 Spliced RNASeq read support for long-tailed chinchilla in SRR391674, SRR391674, SRR391671, SRR391671, SRR396754, SRR396754, Chinchilla lanigera Ovary intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "ovary"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 14 Annotation generated using only RNASeq data from long-tailed chinchilla SRR391674, SRR391674, SRR391671, SRR391671, SRR396754, SRR396754, tissue. Chinchilla lanigera Ovary RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "ovary"}, "type": "rnaseq", "zmenu": "RNASeq"} 38 Spliced RNASeq read support for long-tailed chinchilla for SRR391674, SRR391674, SRR391671, SRR391671, SRR396754, SRR396754, . Chinchilla lanigera Ovary intron-spanning reads 1 \N 41 Spliced RNASeq read support for long-tailed chinchilla in SRR391664, SRR391664, SRR445752, SRR445752, SRR396742, SRR396742, SRR391677, SRR391677, Chinchilla lanigera Skin intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "skin"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 13 Annotation generated using only RNASeq data from long-tailed chinchilla SRR391664, SRR391664, SRR445752, SRR445752, SRR396742, SRR396742, SRR391677, SRR391677, tissue. Chinchilla lanigera Skin RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "skin"}, "type": "rnaseq", "zmenu": "RNASeq"} 40 Spliced RNASeq read support for long-tailed chinchilla for SRR391664, SRR391664, SRR445752, SRR445752, SRR396742, SRR396742, SRR391677, SRR391677, . Chinchilla lanigera Skin intron-spanning reads 1 \N 43 Spliced RNASeq read support for long-tailed chinchilla in SRR391662, SRR391662, SRR396747, SRR396747, SRR396753, SRR396753, Chinchilla lanigera Testis intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "testis"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 18 Annotation generated using only RNASeq data from long-tailed chinchilla SRR391662, SRR391662, SRR396747, SRR396747, SRR396753, SRR396753, tissue. Chinchilla lanigera Testis RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "testis"}, "type": "rnaseq", "zmenu": "RNASeq"} 42 Spliced RNASeq read support for long-tailed chinchilla for SRR391662, SRR391662, SRR396747, SRR396747, SRR396753, SRR396753, . Chinchilla lanigera Testis intron-spanning reads 1 \N 45 Spliced RNASeq read support for long-tailed chinchilla in SRR391675, SRR391675, SRR396752, SRR396752, SRR396751, SRR396751, Chinchilla lanigera Trachea intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "trachea"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 19 Annotation generated using only RNASeq data from long-tailed chinchilla SRR391675, SRR391675, SRR396752, SRR396752, SRR396751, SRR396751, tissue. Chinchilla lanigera Trachea RNASeq 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "trachea"}, "type": "rnaseq", "zmenu": "RNASeq"} 44 Spliced RNASeq read support for long-tailed chinchilla for SRR391675, SRR391675, SRR396752, SRR396752, SRR396751, SRR396751, . Chinchilla lanigera Trachea intron-spanning reads 1 \N 46 For various species, proteins from UniProtKB are aligned to the genome with GeneWise. Other species proteins 1 {"protein_align_feature": {"do_not_display": "1"}}