16 BWA alignments of brain RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site brain RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "brain"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 19 Spliced-read support for brain brain intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "label_key": "", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "brain"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 17 Annotation generated from brain RNA-seq data brain RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "brain"}, "type": "rnaseq", "zmenu": "RNASeq"} 20 Spliced-read support for brain brain intron-spanning reads 1 \N 18 BWA alignments of gut and heart RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site gut and heart RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "gut and heart"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 23 Spliced-read support for gut and heart gut and heart intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "label_key": "", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "gut and heart"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 21 Annotation generated from gut and heart RNA-seq data gut and heart RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "gut and heart"}, "type": "rnaseq", "zmenu": "RNASeq"} 22 Spliced-read support for gut and heart gut and heart intron-spanning reads 1 \N 24 BWA alignments of jaw muscles RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site jaw muscles RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "jaw muscles"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 26 Spliced-read support for jaw muscles jaw muscles intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "label_key": "", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "jaw muscles"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 25 Annotation generated from jaw muscles RNA-seq data jaw muscles RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "jaw muscles"}, "type": "rnaseq", "zmenu": "RNASeq"} 27 Spliced-read support for jaw muscles jaw muscles intron-spanning reads 1 \N 8 BWA alignments of left forelimb RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site left forelimb RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "left forelimb"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 10 Spliced-read support for left forelimb left forelimb intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "label_key": "", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "left forelimb"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 9 Annotation generated from left forelimb RNA-seq data left forelimb RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "left forelimb"}, "type": "rnaseq", "zmenu": "RNASeq"} 11 Spliced-read support for left forelimb left forelimb intron-spanning reads 1 \N 12 BWA alignments of lower beak RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site lower beak RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "lower beak"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 14 Spliced-read support for lower beak lower beak intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "label_key": "", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "lower beak"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 13 Annotation generated from lower beak RNA-seq data lower beak RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "lower beak"}, "type": "rnaseq", "zmenu": "RNASeq"} 15 Spliced-read support for lower beak lower beak intron-spanning reads 1 \N 28 BWA alignments of merged RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site merged RNA-seq BWA alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq_bam"} 30 Spliced-read support for merged merged intron-spanning reads 1 {"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "label_key": "", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "Supporting_alignment"} 29 Annotation generated from merged RNA-seq data merged RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq"} 31 Spliced-read support for merged merged intron-spanning reads 1 \N 33 For various species, proteins from UniProtKB are aligned to the genome with GeneWise. Other species proteins 1 {"protein_align_feature": {"do_not_display": "1"}}