1 \N schema_type variation 2 \N schema_version 113 3 \N patch patch_90_91_a.sql|schema version 4 \N patch patch_90_91_b.sql|extend the characters supported in the publication.authors column 7 1 web_config menu#Arrays and other##var_other# 6 1 web_config set#Illumina BovineHD BeadChip#Illumina BovineHD#variation_set_BovineHD#var_other 8 1 web_config set#All variants on genotyping chips#All genotyping chips#variation_set_all_chips#var_other 9 1 web_config menu#Failed variants##failed# 10 1 web_config menu#Sequence variants##variants# 11 1 web_config source#Sequence variants (EVA and all other sources)#All sequence variants#variation_feature_variation#variants 12 1 web_config set#Illumina BovineSNP50 BeadChip#Illumina BovineSNP50#variation_set_BovineSNP50#var_other 13 1 web_config set#All failed variants#All failed variants#variation_set_fail_all#failed 5 1 web_config set#Illumina BovineLD BeadChip#Illumina BovineLD#variation_set_BovineLD#var_other 15 1 species.production_name bos_taurus 16 1 ploidy 2 30 \N patch patch_91_92_c.sql|Change the column zygosity in the table structural_variation_sample 29 \N patch patch_91_92_b.sql|Add index on feature_stable_id in regulatory_feature_variation and motif_feature_variation 27 1 sift_version sift6.2.1 28 \N patch patch_91_92_a.sql|schema version 25 1 HGVS_version 2.121101 23 \N patch patch_90_91_c.sql|Add new column zygosity in the table structural_variation_sample 24 1 EquivalentAlleles_run_date 2017-10-11 31 \N patch patch_91_92_d.sql|create table to store names of submitters to ClinVar etc 32 1 EPMC_citation_update 2018-2-5 33 1 UCSC_citation_update 2018-2-5 34 \N patch patch_92_93_a.sql|schema version 35 \N patch patch_92_93_b.sql|Extend phenotype_ontology_accession mapped_by_attrib predefined set 36 \N patch patch_92_93_c.sql|Add new evidence attribs to the variation and variation_feature tables 37 \N patch patch_93_94_a.sql|schema version 38 \N patch patch_94_95_a.sql|schema version 39 \N patch patch_94_95_b.sql|create table to store allele synonyms 40 1 sift_version sift 41 1 sift_protein_db_version uniref90.fasta 44 1 TranscriptEffect_run_date 2018-10-19 45 1 VariationClass_run_date 2018-10-20 46 1 EquivalentAlleles_run_date 2018-10-26 47 \N patch patch_95_96_a.sql|schema version 48 \N patch patch_95_96_b.sql|modify index on variation_synonym 49 \N patch patch_95_96_c.sql|add new entries to the failed_description table 50 \N patch patch_95_96_d.sql|create table to store failed variation features 51 \N patch patch_95_96_e.sql|Rename motif_name to binding_matrix_stable_id. 52 \N patch patch_96_97_a.sql|schema version 53 \N patch patch_96_97_b.sql|move ancestral allele column to variation_feature 54 \N patch patch_96_97_c.sql|add an unique index on the name column 55 1 variation_source.database 1 56 1 variation_source.vcf 0 57 \N patch patch_97_98_a.sql|schema version 58 1 EPMC_citation_update 2019-07-16 59 1 UCSC_citation_update 2019-07-16 60 \N patch patch_98_99_a.sql|schema version 61 \N patch patch_98_99_b.sql|Add the column data_source_attrib in the table variation_citation 62 \N patch patch_98_99_c.sql|Increase the size of the title and doi columns in the publication table 63 \N patch patch_98_99_d.sql|add key data_source_attrib 64 \N patch patch_98_99_e.sql|Fix attrib ids in table variation_citation 65 1 PhenotypeAnnotation_run_date_OMIA 2019-10-25 66 \N patch patch_99_100_a.sql|schema version 67 \N patch patch_99_100_b.sql|add frequency to structural variation 68 \N patch patch_99_100_c.sql|add class_attrib_id column to phenotype 69 1 PhenotypeAnnotation_run_date_OMIA 2020-01-22 70 1 PhenotypeAnnotation_run_date_AnimalQTLdb 2020-01-22 71 \N patch patch_100_101_a.sql|schema version 72 \N patch patch_100_101_b.sql|Add new data_source_attrib to variation_citation 73 1 PhenotypeAnnotation_run_date_OMIA 2020-04-23 74 1 PhenotypeAnnotation_run_date_OMIA 2020-04-24 75 \N patch patch_101_102_a.sql|schema version 76 \N patch patch_101_102_b.sql|Add new clinical_significance to variation, variation_feature and structural_variation 77 1 PhenotypeAnnotation_run_date_OMIA 2020-07-21 78 1 PhenotypeAnnotation_run_date_AnimalQTLdb 2020-07-23 79 1 PhenotypeAnnotation_run_date_OMIA 2020-07-23 80 \N patch patch_102_103_a.sql|schema version 81 \N patch patch_103_104_a.sql|schema version 82 1 PhenotypeAnnotation_run_date_OMIA 2021-01-25 83 1 PhenotypeAnnotation_run_date_AnimalQTLdb 2021-01-27 84 1 species.division EnsemblVertebrates 85 \N patch patch_104_105_a.sql|schema version 86 \N patch patch_104_105_b.sql|Increase publication title size 87 1 PhenotypeAnnotation_run_date_OMIA 2021-08-03 88 1 PhenotypeAnnotation_run_date_AnimalQTLdb 2021-08-04 89 \N patch patch_105_106_a.sql|schema version 90 1 PhenotypeAnnotation_run_date_OMIA 2021-10-21 91 1 PhenotypeAnnotation_run_date_AnimalQTLdb 2021-10-21 92 \N patch patch_106_107_a.sql|schema version 93 \N patch patch_106_107_b.sql|consequences update 94 \N patch patch_106_107_c.sql|remove regulatory and TFBS consequences from consequence_types in transcript_variation 95 1 PhenotypeAnnotation_run_date_OMIA 2022-03-24 96 1 PhenotypeAnnotation_run_date_AnimalQTLdb 2022-03-24 97 \N patch patch_107_108_a.sql|schema version 98 \N patch patch_107_108_b.sql|fix SAS population description 99 1 EPMC_citation_update 2022-07-13 100 1 EquivalentAlleles_run_date 2022-07-15 101 1 PhenotypeAnnotation_run_date_OMIA 2022-07-15 102 1 PhenotypeAnnotation_run_date_AnimalQTLdb 2022-07-15 103 1 TranscriptEffect_run_date 2022-07-19 104 1 VariationClass_run_date 2022-07-20 105 1 web_config source#EVA variants#EVA#variation_feature_variation_EVA#variants 106 \N patch patch_108_109_a.sql|schema version 107 1 TranscriptEffect_run_date 2022-09-22 108 1 VariationClass_run_date 2022-09-22 109 1 PhenotypeAnnotation_run_date_OMIA 2022-10-18 110 1 PhenotypeAnnotation_run_date_AnimalQTLdb 2022-10-18 111 \N patch patch_109_110_a.sql|schema version 112 \N patch patch_109_110_b.sql|Add DDG2P data_source_attrib to variation_citation 113 \N patch patch_109_110_c.sql|Add new clinical_significance values to variation, variation_feature and structural_variation 114 1 EquivalentAlleles_run_date 2023-02-08 115 1 TranscriptEffect_run_date 2023-02-09 116 1 VariationClass_run_date 2023-02-09 117 1 PhenotypeAnnotation_run_date_OMIA 2023-03-05 118 1 PhenotypeAnnotation_run_date_AnimalQTLdb 2023-03-05 119 \N patch patch_110_111_a.sql|schema version 120 \N patch patch_110_111_b.sql|Update transcript_variation primary key 121 1 EquivalentAlleles_run_date 2023-07-10 122 1 TranscriptEffect_run_date 2023-07-11 123 1 VariationClass_run_date 2023-07-11 124 1 TranscriptEffect_run_date 2023-07-12 125 1 VariationClass_run_date 2023-07-12 126 1 PhenotypeAnnotation_run_date_OMIA 2023-07-25 127 \N patch patch_111_112_a.sql|schema version 128 1 PhenotypeAnnotation_run_date_OMIA 2023-11-24 129 \N patch patch_112_113_a.sql|schema version 130 \N patch patch_112_113_b.sql|Update meta_key length 131 1 PhenotypeAnnotation_run_date_OMIA 2024-06-18 132 1 PhenotypeAnnotation_run_date_OMIA 2024-06-19 133 1 PhenotypeAnnotation_run_date_AnimalQTLdb 2024-06-19