1 2022-02-01 15:52:15 repeatmask_repbase_teleost \N \N \N \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/RepeatMasker -nolow -species "Teleostei" -engine "crossmatch" HiveRepeatMasker \N \N \N 2 2022-02-01 16:18:53 repeatdetector \N \N \N repeatdetector 05/22/2015 /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/Red \N \N \N \N \N 3 2022-02-01 17:26:10 repeatmask_repeatmodeler \N \N \N \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/RepeatMasker -nolow -lib "/hps/nobackup/flicek/ensembl/genebuild/custom_repeat_libraries/repeatmodeler/species/astatotilapia_calliptera/astatotilapia_calliptera.repeatmodeler.fa" -engine "crossmatch" HiveRepeatMasker \N \N \N 4 2022-02-06 02:44:56 dust \N \N \N \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/dustmasker \N HiveDust \N \N \N 5 2022-02-06 02:48:22 trf \N \N \N \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/trf \N HiveTRF \N \N \N 6 2022-05-04 15:54:13 ensembl \N \N \N \N \N \N \N \N \N \N \N 49 2022-03-05 02:09:15 ncrna \N \N /hps/nobackup/flicek/ensembl/genebuild/ereboperezsilva/astatotilapia_calliptera_annotation/astatotilapia_calliptera/GCA_ \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/cmsearch \N HiveCMSearch \N \N /hps/nobackup/flicek/ensembl/genebuild/b 50 2022-03-05 02:18:18 blastmirna \N \N /hps/nobackup/flicek/ensembl/genebuild/blastdb/ncrna/mirbase_22/all_mirnas.fa \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/blastn -num_threads 3 HiveBlastmiRNA \N \N \N 195 2024-07-22 10:08:32 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 169 2022-12-01 14:55:27 rnacentral_checksum RNACentral 2022-10-14 \N rnacentral_checksum \N \N \N \N \N \N \N 170 2022-12-06 08:49:53 gene_symbol_classifier \N \N \N \N 0.12.1 \N \N \N \N \N \N 167 2022-11-30 12:02:57 uniprot_checksum UniProt 2022-10-12 \N uniprot_checksum \N \N \N \N \N \N \N 168 2022-11-30 12:02:57 prints PRINTS 42.0 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 192 2024-06-17 05:33:10 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 191 2024-06-17 05:33:05 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 165 2022-11-30 12:02:57 gene3d Gene3D 4.3.0 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 161 2022-11-30 12:02:57 seg Seg \N \N seg \N \N \N \N \N \N \N 190 2024-06-17 05:31:48 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 163 2022-11-30 12:02:57 uniparc_checksum UniParc 2022-08-15 \N uniparc_checksum \N \N \N \N \N \N \N 159 2022-11-30 12:02:57 signalp SignalP 4.1 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 160 2022-11-30 12:02:57 tmhmm TMHMM 2.0c \N InterProScan 5.59-91.0 \N \N \N \N \N \N 157 2022-11-30 12:02:56 mobidblite MobiDBLite 2.0 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 158 2022-11-30 12:02:56 ncoils ncoils 2.2.1 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 155 2022-11-30 12:02:56 superfamily SuperFamily 1.75 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 156 2022-11-30 12:02:56 tigrfam TIGRfam 15.0 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 153 2022-11-30 12:02:56 sfld SFLD 4 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 174 2023-11-02 09:05:06 smart Smart 9.0 \N InterProScan 5.64-96.0 \N \N \N \N \N \N 189 2024-06-17 05:31:18 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 193 2024-06-17 05:33:11 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 151 2022-11-30 12:02:56 pirsf PIRSF 3.10 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 147 2022-11-29 11:29:43 percentagerepeat \N \N \N \N \N \N \N \N \N \N \N 188 2024-06-17 05:30:30 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 142 2022-11-29 11:24:45 percentgc \N \N \N \N \N \N \N \N \N \N \N 143 2022-11-29 11:29:04 pseudogenedensity \N \N \N \N \N \N \N \N \N \N \N 144 2022-11-29 11:29:14 shortnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 145 2022-11-29 11:29:15 longnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 146 2022-11-29 11:29:15 codingdensity \N \N \N \N \N \N \N \N \N \N \N 137 2022-05-24 10:10:08 rnaseq_intron_support \N \N \N \N \N \N \N \N \N \N \N 138 2022-05-24 10:10:08 cdna_alignment_core \N \N \N \N \N \N \N \N \N \N \N 139 2022-05-24 10:10:08 other_protein uniprot \N \N \N \N \N \N \N \N \N \N 140 2022-05-24 10:10:08 projected_transcript danio_rerio_core_106_11 \N \N \N \N \N \N \N \N \N \N 141 \N rfamcmsearch \N 14.0 /hps/nobackup/flicek/ensembl/genebuild/ereboperezsilva/astatotilapia_calliptera_annotation/astatotilapia_calliptera/GCA_ \N \N cmsearch \N HiveCMSearch \N \N \N 194 2024-06-17 10:53:42 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 177 2023-11-02 09:05:51 cdd CDD 3.20 \N InterProScan 5.64-96.0 \N \N \N \N \N \N 180 2023-11-22 21:29:04 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 181 2023-11-22 21:29:04 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 182 2023-11-22 21:30:50 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 198 2024-07-25 12:55:53 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 196 2024-07-25 06:54:40 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N