Description

The promoter window is defined as the 1000 bp immediately upstream of the MANE Select or Ensembl Canonical TSS. The overlap with promoters annotated by Ensembl Regulation is indicated by the ensembl_promoter_id field.

Promoter window types:

• MANE_Select_with_TSS: MANE Select transcript has an annotated TSS
• MANE_Select_without_TSS: MANE Select transcript does not have a TSS (no annotated 5'UTR)
• Non_MANE_Select_model: reference transcript is not MANE Select but Ensembl Canonical

For more information on the GENCODE promoter windows, please visit the GENCODE website or contact GENCODE.