#ID(s) interactor A	ID(s) interactor B	Alt. ID(s) interactor A	Alt. ID(s) interactor B	Alias(es) interactor A	Alias(es) interactor B	Interaction detection method(s)	Publication 1st author(s)	Publication Identifier(s)	Taxid interactor A	Taxid interactor B	Interaction type(s)	Source database(s)	Interaction identifier(s)	Confidence value(s)	Expansion method(s)	Biological role(s) interactor A	Biological role(s) interactor B	Experimental role(s) interactor A	Experimental role(s) interactor B	Type(s) interactor A	Type(s) interactor B	Xref(s) interactor A	Xref(s) interactor B	Interaction Xref(s)	Annotation(s) interactor A	Annotation(s) interactor B	Interaction annotation(s)	Host organism(s)	Interaction parameter(s)	Creation date	Update date	Checksum(s) interactor A	Checksum(s) interactor B	Interaction Checksum(s)	Negative	Feature(s) interactor A	Feature(s) interactor B	Stoichiometry(s) interactor A	Stoichiometry(s) interactor B	Identification method participant A	Identification method participant B
uniprotkb:Q9NTX7	uniprotkb:Q92878	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-495494|uniprotkb:O43254|uniprotkb:Q6GMT7|uniprotkb:Q6P5X3|uniprotkb:Q9UP86|uniprotkb:B9EGF5|ensembl:ENSP00000368100	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rad50_human(display_long)|uniprotkb:RAD50(gene name)|psi-mi:RAD50(display_short)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_005723.2|dip:DIP-33606N|ensembl:ENSG00000113522(gene)|ensembl:ENST00000378823(transcript)|go:"GO:0000019"(regulation of mitotic recombination)|go:"GO:0000722"(telomere maintenance via recombination)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0000794"(condensed nuclear chromosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003691"(double-stranded telomeric DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006281"(DNA repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007004"(telomere maintenance via telomerase)|go:"GO:0007131"(reciprocal meiotic recombination)|go:"GO:0016020"(membrane)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0030870"(Mre11 complex)|go:"GO:0031860"(telomeric 3' overhang formation)|go:"GO:0031954"(positive regulation of protein autophosphorylation)|go:"GO:0032206"(positive regulation of telomere maintenance)|go:"GO:0032508"(DNA duplex unwinding)|go:"GO:0033674"(positive regulation of kinase activity)|go:"GO:0035861"(site of double-strand break)|go:"GO:0042802"(identical protein binding)|go:"GO:0043047"(single-stranded telomeric DNA binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051880"(G-quadruplex DNA binding)|go:"GO:0070192"(chromosome organization involved in meiotic cell cycle)|go:"GO:0090305"(nucleic acid phosphodiester bond hydrolysis)|go:"GO:1904354"(negative regulation of telomere capping)|interpro:IPR013134(Zinc hook, Rad50)|interpro:IPR027417|interpro:IPR038729|mint:Q92878|rcsb pdb:5GOX|reactome:R-HSA-2559586|reactome:R-HSA-5685938|reactome:R-HSA-5685939|reactome:R-HSA-5685942|reactome:R-HSA-5693548|reactome:R-HSA-5693554|reactome:R-HSA-5693565|reactome:R-HSA-5693568|reactome:R-HSA-5693571|reactome:R-HSA-5693579|reactome:R-HSA-5693607|reactome:R-HSA-5693616|reactome:R-HSA-6804756|reactome:R-HSA-69473|reactome:R-HSA-912446|interpro:IPR004584(Recombination/repair protein Rad50)	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:yZsT5GcpA9HeFMoK4Jb1HYhrdKQ9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q7Z6Z7	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-625934|uniprotkb:O15029|uniprotkb:Q4G2Z2|uniprotkb:Q5H961|uniprotkb:Q6P4D0|uniprotkb:Q8NG67|uniprotkb:Q9BUI0|uniprotkb:Q9HCJ4|uniprotkb:Q9NSL6|uniprotkb:Q9P0A9|ensembl:ENSP00000262854|ensembl:ENSP00000340648	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:huwe1_human(display_long)|uniprotkb:HECT, UBA and WWE domain-containing protein 1(gene name synonym)|uniprotkb:Upstream regulatory element-binding protein 1(gene name synonym)|uniprotkb:Mcl-1 ubiquitin ligase E3(gene name synonym)|uniprotkb:ARF-binding protein 1(gene name synonym)|uniprotkb:Large structure of UREB1(gene name synonym)|uniprotkb:Homologous to E6AP carboxyl terminus homologous protein 9(gene name synonym)|uniprotkb:HUWE1(gene name)|psi-mi:HUWE1(display_short)|uniprotkb:KIAA0312(gene name synonym)|uniprotkb:KIAA1578(gene name synonym)|uniprotkb:HSPC272(orf name)|uniprotkb:HECT-type E3 ubiquitin transferase HUWE1(gene name synonym)|uniprotkb:UREB1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	ensembl:ENSG00000086758(gene)|ensembl:ENST00000262854(transcript)|ensembl:ENST00000342160(transcript)|go:"GO:0000139"(Golgi membrane)|go:"GO:0000209"(protein polyubiquitination)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006284"(base-excision repair)|go:"GO:0006513"(protein monoubiquitination)|go:"GO:0007030"(Golgi organization)|go:"GO:0010637"(negative regulation of mitochondrial fusion)|go:"GO:0016020"(membrane)|go:"GO:0016567"(protein ubiquitination)|go:"GO:0016574"(histone ubiquitination)|go:"GO:0030154"(cell differentiation)|go:"GO:0031398"(positive regulation of protein ubiquitination)|go:"GO:0032922"(circadian regulation of gene expression)|go:"GO:0034774"(secretory granule lumen)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0045732"(positive regulation of protein catabolic process)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070062"(extracellular exosome)|go:"GO:0098779"(positive regulation of mitophagy in response to mitochondrial depolarization)|go:"GO:1903955"(positive regulation of protein targeting to mitochondrion)|go:"GO:1904813"(ficolin-1-rich granule lumen)|interpro:IPR000569(HECT)|interpro:IPR004170(WWE)|interpro:IPR009060(UBA-like)|interpro:IPR010309(E3 ubiquitin ligase, region of unknown function DUF908)|interpro:IPR010314(E3 ubiquitin ligase, region of unknown function DUF913)|interpro:IPR015940(Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR025527|interpro:IPR035983|interpro:IPR037197|interpro:IPR041918|mint:Q7Z6Z7|rcsb pdb:2EKK|rcsb pdb:2MUL|rcsb pdb:3G1N|go:"GO:0061025"(membrane fusion)|rcsb pdb:5C6H|rcsb pdb:5LP8|rcsb pdb:6FYH|rcsb pdb:6MIW|rcsb pdb:6PFL|reactome:R-HSA-6798695|rcsb pdb:3H1D|reactome:R-HSA-983168|refseq:NP_113584.3|refseq:XP_005262022.1|dip:DIP-34362N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:TnIn0mcFc81bJlMkyWTtq3n/uOg9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P35251	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-476616|uniprotkb:Q5XKF5|uniprotkb:Q6PKU0|uniprotkb:Q86V41|uniprotkb:Q86V46|ensembl:ENSP00000371321|uniprotkb:A8K6E7	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rfc1_human(display_long)|uniprotkb:Activator 1 subunit 1(gene name synonym)|uniprotkb:Replication factor C large subunit(gene name synonym)|uniprotkb:Replication factor C 140 kDa subunit(gene name synonym)|uniprotkb:Activator 1 140 kDa subunit(gene name synonym)|uniprotkb:Activator 1 large subunit(gene name synonym)|uniprotkb:DNA-binding protein PO-GA(gene name synonym)|uniprotkb:RFC1(gene name)|psi-mi:RFC1(display_short)|uniprotkb:RFC140(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001191676.1|refseq:NP_002904.3|ensembl:ENSG00000035928(gene)|ensembl:ENST00000381897(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0003677"(DNA binding)|go:"GO:0003689"(DNA clamp loader activity)|go:"GO:0003690"(double-stranded DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005663"(DNA replication factor C complex)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0007004"(telomere maintenance via telomerase)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0031391"(Elg1 RFC-like complex)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|go:"GO:0061860"(DNA clamp unloader activity)|go:"GO:0070062"(extracellular exosome)|go:"GO:0090618"(DNA clamp unloading)|interpro:IPR001357(BRCT)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR008921(DNA polymerase III clamp loader subunit, C-terminal)|interpro:IPR012178(DNA replication factor C, large subunit)|interpro:IPR013725(DNA replication factor RFC1, C-terminal)|interpro:IPR027417|interpro:IPR036420|mint:P35251|rcsb pdb:2EBU|rcsb pdb:2K6G|rcsb pdb:2K7F|rcsb pdb:6VVO|reactome:R-HSA-110312|reactome:R-HSA-110314|reactome:R-HSA-110320|reactome:R-HSA-174411|reactome:R-HSA-5651801|reactome:R-HSA-5655862|reactome:R-HSA-5656121|reactome:R-HSA-5656169|reactome:R-HSA-5685942|reactome:R-HSA-5696397|reactome:R-HSA-5696400|reactome:R-HSA-6782135|reactome:R-HSA-6782210|reactome:R-HSA-69091	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:m4MUwhmpn0xCElyHLAw4FlIVyBs9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P15927	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-621404|ensembl:ENSP00000363021|uniprotkb:Q52II0|uniprotkb:Q5TEI9|uniprotkb:Q5TEJ5	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rfa2_human(display_long)|uniprotkb:RPA34(gene name synonym)|uniprotkb:Replication protein A 34 kDa subunit(gene name synonym)|uniprotkb:Replication factor A protein 2(gene name synonym)|uniprotkb:RPA2(gene name)|psi-mi:RPA2(display_short)|uniprotkb:REPA2(gene name synonym)|uniprotkb:RPA32(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	rcsb pdb:1L1O|rcsb pdb:1QUQ|rcsb pdb:1Z1D|rcsb pdb:2PI2|rcsb pdb:2PQA|rcsb pdb:2Z6K|rcsb pdb:3KDF|rcsb pdb:4MQV|rcsb pdb:4OU0|reactome:R-HSA-110312|reactome:R-HSA-110314|reactome:R-HSA-110320|reactome:R-HSA-174437|reactome:R-HSA-176187|reactome:R-HSA-3371453|reactome:R-HSA-3371511|reactome:R-HSA-5358565|reactome:R-HSA-5358606|reactome:R-HSA-5651801|reactome:R-HSA-5655862|reactome:R-HSA-5656121|reactome:R-HSA-5656169|reactome:R-HSA-5685938|reactome:R-HSA-5685942|reactome:R-HSA-5693607|reactome:R-HSA-5693616|reactome:R-HSA-5696395|reactome:R-HSA-5696397|reactome:R-HSA-5696400|reactome:R-HSA-6782135|reactome:R-HSA-6782210|reactome:R-HSA-6783310|reactome:R-HSA-6804756|reactome:R-HSA-68962|reactome:R-HSA-69166|reactome:R-HSA-69473|reactome:R-HSA-912446|rcsb pdb:1DPU|ensembl:ENSG00000117748(gene)|ensembl:ENST00000373912(transcript)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000724"(double-strand break repair via homologous recombination)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0000785"(chromatin)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005662"(DNA replication factor A complex)|go:"GO:0006260"(DNA replication)|go:"GO:0006284"(base-excision repair)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006298"(mismatch repair)|go:"GO:0010569"(regulation of double-strand break repair via homologous recombination)|go:"GO:0016604"(nuclear body)|go:"GO:0016605"(PML body)|go:"GO:0019899"(enzyme binding)|go:"GO:0019903"(protein phosphatase binding)|go:"GO:0031571"(mitotic G1 DNA damage checkpoint signaling)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0034502"(protein localization to chromosome)|go:"GO:0047485"(protein N-terminus binding)|go:"GO:0098505"(G-rich strand telomeric DNA binding)|go:"GO:2000001"(regulation of DNA damage checkpoint)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014646(Replication protein A, subunit RPA32)|interpro:IPR014892(Replication protein A C terminal)|interpro:IPR036388|interpro:IPR036390|interpro:IPR040260|mint:P15927|refseq:NP_001273005.1|refseq:NP_002937.1|refseq:NP_001284487.1|dip:DIP-24187N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:+Ute8Lq5hnN0sLAQNWZb0cAbcTI9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P27694	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-621389|ensembl:ENSP00000254719|uniprotkb:Q59ES9|uniprotkb:A8K0Y9	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rfa1_human(display_long)|uniprotkb:Replication factor A protein 1(gene name synonym)|uniprotkb:Single-stranded DNA-binding protein(gene name synonym)|uniprotkb:RPA1(gene name)|psi-mi:RPA1(display_short)|uniprotkb:REPA1(gene name synonym)|uniprotkb:RPA70(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	ensembl:ENSG00000132383(gene)|ensembl:ENST00000254719(transcript)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000724"(double-strand break repair via homologous recombination)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005662"(DNA replication factor A complex)|go:"GO:0006260"(DNA replication)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0006284"(base-excision repair)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006298"(mismatch repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007004"(telomere maintenance via telomerase)|go:"GO:0016605"(PML body)|go:"GO:0034502"(protein localization to chromosome)|go:"GO:0043047"(single-stranded telomeric DNA binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051321"(meiotic cell cycle)|go:"GO:0090734"(site of DNA damage)|go:"GO:0098505"(G-rich strand telomeric DNA binding)|interpro:IPR004365(Nucleic acid binding, OB-fold, tRNA/helicase-type)|interpro:IPR004591(Replication factor-a protein 1 Rpa1)|interpro:IPR007199(Replication factor-A protein 1, N-terminal)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013955(Replication factor-A, C-terminal)|interpro:IPR031657|go:"GO:0006268"(DNA unwinding involved in DNA replication)|mint:P27694|rcsb pdb:1EWI|rcsb pdb:1FGU|rcsb pdb:1JMC|rcsb pdb:1L1O|rcsb pdb:2B29|rcsb pdb:2B3G|rcsb pdb:4IJH|rcsb pdb:4IJL|rcsb pdb:4IPC|rcsb pdb:4IPD|rcsb pdb:4IPG|rcsb pdb:4IPH|rcsb pdb:4LUO|rcsb pdb:4LUV|rcsb pdb:4LUZ|rcsb pdb:4LW1|rcsb pdb:4LWC|rcsb pdb:4NB3|rcsb pdb:4O0A|rcsb pdb:4R4C|rcsb pdb:4R4I|rcsb pdb:4R4O|rcsb pdb:4R4Q|rcsb pdb:4R4T|rcsb pdb:5E7N|rcsb pdb:5EAY|rcsb pdb:5N85|rcsb pdb:5N8A|reactome:R-HSA-110312|reactome:R-HSA-110314|reactome:R-HSA-110320|reactome:R-HSA-174437|reactome:R-HSA-176187|reactome:R-HSA-3371453|reactome:R-HSA-3371511|reactome:R-HSA-5358565|reactome:R-HSA-5358606|reactome:R-HSA-5651801|reactome:R-HSA-5655862|reactome:R-HSA-5656121|reactome:R-HSA-5656169|reactome:R-HSA-5685938|reactome:R-HSA-5685942|reactome:R-HSA-5693607|reactome:R-HSA-5693616|reactome:R-HSA-5696395|reactome:R-HSA-5696397|reactome:R-HSA-5696400|reactome:R-HSA-6782135|reactome:R-HSA-6782210|reactome:R-HSA-6783310|reactome:R-HSA-6804756|reactome:R-HSA-68962|reactome:R-HSA-69166|reactome:R-HSA-69473|reactome:R-HSA-912446|reactome:R-HSA-3108214|refseq:NP_002936.1|dip:DIP-24189N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:DRZpMUlGyS0Qa5XFEtx71k0iPig9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P62979	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-357375|ensembl:ENSP00000272317|ensembl:ENSP00000383981|ensembl:ENSP00000385659|uniprotkb:P14798|uniprotkb:Q6LBL4|uniprotkb:Q9BQ77|uniprotkb:P02248|uniprotkb:P02249|uniprotkb:P02250|uniprotkb:P62988|uniprotkb:Q29120|uniprotkb:Q6LDU5|uniprotkb:Q8WYN8|uniprotkb:Q91887|uniprotkb:Q91888|uniprotkb:Q9BWD6|uniprotkb:Q9BX98|uniprotkb:Q9UEF2|uniprotkb:Q9UEG1|uniprotkb:Q9UEK8|uniprotkb:Q9UPK7	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rs27a_human(display_long)|uniprotkb:RPS27A(gene name)|psi-mi:RPS27A(display_short)|uniprotkb:UBA80(gene name synonym)|uniprotkb:UBCEP1(gene name synonym)|uniprotkb:Ubiquitin carboxyl extension protein 80(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	reactome:R-HSA-8856825|reactome:R-HSA-8856828|reactome:R-HSA-8863795|reactome:R-HSA-8866652|reactome:R-HSA-8866654|reactome:R-HSA-8875360|reactome:R-HSA-8876493|reactome:R-HSA-8932339|reactome:R-HSA-8939236|reactome:R-HSA-8939902|reactome:R-HSA-8941858|reactome:R-HSA-8948747|reactome:R-HSA-8948751|reactome:R-HSA-8854050|reactome:R-HSA-8951664|reactome:R-HSA-901032|reactome:R-HSA-9010553|reactome:R-HSA-9013507|reactome:R-HSA-9013973|reactome:R-HSA-9014325|reactome:R-HSA-9020702|reactome:R-HSA-9033241|reactome:R-HSA-912631|reactome:R-HSA-917729|reactome:R-HSA-917937|reactome:R-HSA-936440|reactome:R-HSA-936964|reactome:R-HSA-937039|reactome:R-HSA-937041|reactome:R-HSA-937042|reactome:R-HSA-937072|reactome:R-HSA-9604323|reactome:R-HSA-9613829|reactome:R-HSA-9615710|reactome:R-HSA-9633012|reactome:R-HSA-9636383|reactome:R-HSA-9637628|reactome:R-HSA-9645460|reactome:R-HSA-9646399|reactome:R-HSA-9648002|reactome:R-HSA-9664873|reactome:R-HSA-9683683|reactome:R-HSA-9694493|reactome:R-HSA-9705462|reactome:R-HSA-9706369|reactome:R-HSA-9706377|reactome:R-HSA-9708530|reactome:R-HSA-975110|reactome:R-HSA-975163|reactome:R-HSA-975956|reactome:R-HSA-975957|reactome:R-HSA-977225|reactome:R-HSA-983168|reactome:R-HSA-975144|ensembl:ENSG00000143947(gene)|ensembl:ENST00000272317(transcript)|ensembl:ENST00000402285(transcript)|ensembl:ENST00000404735(transcript)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005615"(extracellular space)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005741"(mitochondrial outer membrane)|go:"GO:0005789"(endoplasmic reticulum membrane)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0016020"(membrane)|go:"GO:0016567"(protein ubiquitination)|go:"GO:0019941"(modification-dependent protein catabolic process)|go:"GO:0022626"(cytosolic ribosome)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0010008"(endosome membrane)|go:"GO:0030666"(endocytic vesicle membrane)|go:"GO:0031386"(protein tag)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031982"(vesicle)|go:"GO:0046872"(metal ion binding)|go:"GO:0070062"(extracellular exosome)|interpro:IPR000626(Ubiquitin)|interpro:IPR002906(Ribosomal protein S27a)|interpro:IPR011332(Ribosomal protein, zinc-binding)|interpro:IPR019954|interpro:IPR019956|interpro:IPR029071|interpro:IPR038582|mint:P62979|rcsb pdb:2KHW|rcsb pdb:2KOX|rcsb pdb:2KTF|rcsb pdb:2KWU|rcsb pdb:2KWV|rcsb pdb:2L0F|rcsb pdb:2L0T|rcsb pdb:2XK5|rcsb pdb:3AXC|rcsb pdb:3I3T|rcsb pdb:3K9P|rcsb pdb:3N30|rcsb pdb:3N32|rcsb pdb:3NHE|rcsb pdb:3NOB|rcsb pdb:3NS8|rcsb pdb:3PHD|rcsb pdb:3PHW|rcsb pdb:3TBL|rcsb pdb:3VDZ|rcsb pdb:4R62|rcsb pdb:6EK0|rcsb pdb:6FEC|rcsb pdb:4UG0|rcsb pdb:4V6X|rcsb pdb:6G18|rcsb pdb:6G51|rcsb pdb:6G53|rcsb pdb:6G5H|rcsb pdb:5A2Q|rcsb pdb:6G5I|rcsb pdb:6IP5|rcsb pdb:6IP6|rcsb pdb:5AJ0|rcsb pdb:6IP8|rcsb pdb:6J99|rcsb pdb:5FLX|rcsb pdb:6KFP|rcsb pdb:5LKS|rcsb pdb:6KG6|rcsb pdb:6KIU|rcsb pdb:6KIV|rcsb pdb:6KIW|rcsb pdb:6OLE|rcsb pdb:6OLF|rcsb pdb:6OLG|rcsb pdb:6OLI|rcsb pdb:6OLZ|rcsb pdb:6OM0|rcsb pdb:6OM7|rcsb pdb:6QZP|rcsb pdb:6SQO|rcsb pdb:5T2C|rcsb pdb:5WVO|rcsb pdb:6SQR|rcsb pdb:6SQS|rcsb pdb:6XA1|rcsb pdb:6Y0G|rcsb pdb:5YDK|rcsb pdb:6Y57|rcsb pdb:6YBS|rcsb pdb:6Z6L|rcsb pdb:6Z6M|rcsb pdb:6Z6N|rcsb pdb:6ZLW|rcsb pdb:6ZM7|rcsb pdb:6ZME|rcsb pdb:6ZMI|rcsb pdb:6ZMO|rcsb pdb:6ZMT|rcsb pdb:6ZMW|rcsb pdb:6ZN5|rcsb pdb:6ZOJ|rcsb pdb:6ZOL|rcsb pdb:6ZON|rcsb pdb:6ZP4|rcsb pdb:6ZUO|rcsb pdb:6DC6|rcsb pdb:6ZV6|rcsb pdb:6ZVH|rcsb pdb:6ZVJ|rcsb pdb:6ZXD|rcsb pdb:6ZXE|rcsb pdb:7K5I|reactome:R-HSA-110312|reactome:R-HSA-110314|reactome:R-HSA-110320|reactome:R-HSA-1169091|reactome:R-HSA-1169408|reactome:R-HSA-1234176|reactome:R-HSA-1236382|reactome:R-HSA-1236974|reactome:R-HSA-1253288|reactome:R-HSA-1295596|reactome:R-HSA-1358803|reactome:R-HSA-156827|reactome:R-HSA-156902|rcsb pdb:6ZXF|reactome:R-HSA-162588|reactome:R-HSA-168638|reactome:R-HSA-168927|reactome:R-HSA-168928|rcsb pdb:6ZXG|reactome:R-HSA-174048|reactome:R-HSA-174084|reactome:R-HSA-174113|reactome:R-HSA-174154|reactome:R-HSA-174178|reactome:R-HSA-174184|rcsb pdb:6ZXH|reactome:R-HSA-174490|reactome:R-HSA-175474|reactome:R-HSA-179409|reactome:R-HSA-1799339|reactome:R-HSA-180534|reactome:R-HSA-180585|reactome:R-HSA-182971|reactome:R-HSA-187577|rcsb pdb:7A09|rcsb pdb:7BWD|reactome:R-HSA-192823|reactome:R-HSA-195253|reactome:R-HSA-201681|reactome:R-HSA-2565942|reactome:R-HSA-202424|reactome:R-HSA-205043|reactome:R-HSA-2644606|reactome:R-HSA-2672351|reactome:R-HSA-209543|reactome:R-HSA-209560|reactome:R-HSA-2691232|reactome:R-HSA-2871837|reactome:R-HSA-2894862|reactome:R-HSA-2979096|reactome:R-HSA-3134975|reactome:R-HSA-3322077|reactome:R-HSA-349425|reactome:R-HSA-211733|reactome:R-HSA-3769402|reactome:R-HSA-3785653|reactome:R-HSA-382556|reactome:R-HSA-400253|reactome:R-HSA-445989|reactome:R-HSA-450302|reactome:R-HSA-450321|reactome:R-HSA-450408|reactome:R-HSA-2122947|reactome:R-HSA-4608870|reactome:R-HSA-4641257|reactome:R-HSA-2122948|reactome:R-HSA-4641258|reactome:R-HSA-2173788|reactome:R-HSA-4641263|reactome:R-HSA-5205685|reactome:R-HSA-532668|reactome:R-HSA-2173791|reactome:R-HSA-5357905|reactome:R-HSA-2173795|reactome:R-HSA-2173796|reactome:R-HSA-2408557|reactome:R-HSA-2467813|reactome:R-HSA-5357956|reactome:R-HSA-5358346|reactome:R-HSA-2559580|reactome:R-HSA-2559582|reactome:R-HSA-5362768|reactome:R-HSA-5607761|reactome:R-HSA-2559585|reactome:R-HSA-5607764|reactome:R-HSA-5610780|reactome:R-HSA-5610783|reactome:R-HSA-5610785|reactome:R-HSA-5632684|reactome:R-HSA-5654726|reactome:R-HSA-5654727|reactome:R-HSA-5654732|reactome:R-HSA-5654733|reactome:R-HSA-5655862|reactome:R-HSA-5656169|reactome:R-HSA-5656121|reactome:R-HSA-5658442|reactome:R-HSA-5668541|reactome:R-HSA-5675221|reactome:R-HSA-5675482|reactome:R-HSA-5676590|reactome:R-HSA-5678895|reactome:R-HSA-5684264|reactome:R-HSA-5685942|reactome:R-HSA-5687128|reactome:R-HSA-5689603|reactome:R-HSA-5689877|reactome:R-HSA-5689880|reactome:R-HSA-5689896|reactome:R-HSA-5689901|reactome:R-HSA-5693565|reactome:R-HSA-5693607|reactome:R-HSA-5696394|reactome:R-HSA-5696395|reactome:R-HSA-5696397|reactome:R-HSA-5696400|reactome:R-HSA-6781823|reactome:R-HSA-6781827|reactome:R-HSA-6782135|reactome:R-HSA-6782210|reactome:R-HSA-6783310|reactome:R-HSA-6791226|reactome:R-HSA-6804756|reactome:R-HSA-6804757|reactome:R-HSA-6804760|reactome:R-HSA-6807004|reactome:R-HSA-68827|reactome:R-HSA-68949|reactome:R-HSA-69017|reactome:R-HSA-69231|reactome:R-HSA-69481|reactome:R-HSA-69541|reactome:R-HSA-69601|reactome:R-HSA-72649|reactome:R-HSA-72689|reactome:R-HSA-72695|reactome:R-HSA-72702|reactome:R-HSA-72706|reactome:R-HSA-72764|reactome:R-HSA-75815|reactome:R-HSA-8849469|reactome:R-HSA-8852276|refseq:NP_001129064.1|refseq:NP_001170884.1|refseq:NP_002945.1	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:2LSJafy6vjKHYZcZVx8zZaOXRis9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9H6R7	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-346906|uniprotkb:D6W532|uniprotkb:Q8IYK0|uniprotkb:Q9HBP5|ensembl:ENSP00000295148	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:wdcp_human(display_long)|uniprotkb:WDCP(gene name)|psi-mi:WDCP(display_short)|uniprotkb:C2orf44(gene name synonym)|uniprotkb:PP384(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001135791.1|refseq:NP_079479.1|ensembl:ENSG00000163026(gene)|ensembl:ENST00000295148(transcript)|go:"GO:0019900"(kinase binding)|go:"GO:0051259"(protein complex oligomerization)|interpro:IPR028041|mint:Q9H6R7	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:qT8Zfifj+1U5HvWjtXjKTiVj1OA9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q01082	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-351561|intact:EBI-1642531|uniprotkb:O60837|uniprotkb:Q16057|uniprotkb:Q53R99|uniprotkb:Q59ER3|uniprotkb:Q8IX99|uniprotkb:B2RP63|ensembl:ENSP00000349259	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:sptb2_human(display_long)|uniprotkb:SPTBN1(gene name)|psi-mi:SPTBN1(display_short)|uniprotkb:SPTB2(gene name synonym)|uniprotkb:Spectrin, non-erythroid beta chain 1(gene name synonym)|uniprotkb:Beta-II spectrin(gene name synonym)|uniprotkb:Fodrin beta chain(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_003119.2|refseq:NP_842565.2|ensembl:ENSG00000115306(gene)|ensembl:ENST00000356805(transcript)|go:"GO:0000281"(mitotic cytokinesis)|go:"GO:0003723"(RNA binding)|go:"GO:0003779"(actin binding)|go:"GO:0005200"(structural constituent of cytoskeleton)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005543"(phospholipid binding)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0007009"(plasma membrane organization)|go:"GO:0007182"(common-partner SMAD protein phosphorylation)|go:"GO:0008091"(spectrin)|go:"GO:0014069"(postsynaptic density)|go:"GO:0014731"(spectrin-associated cytoskeleton)|go:"GO:0030506"(ankyrin binding)|go:"GO:0030673"(axolemma)|go:"GO:0031430"(M band)|go:"GO:0032437"(cuticular plate)|go:"GO:0032743"(positive regulation of interleukin-2 production)|go:"GO:0043001"(Golgi to plasma membrane protein transport)|go:"GO:0044877"(protein-containing complex binding)|go:"GO:0045296"(cadherin binding)|go:"GO:0051020"(GTPase binding)|go:"GO:0051693"(actin filament capping)|go:"GO:0060390"(regulation of SMAD protein signal transduction)|go:"GO:0070062"(extracellular exosome)|go:"GO:0071709"(membrane assembly)|go:"GO:0072659"(protein localization to plasma membrane)|go:"GO:0098978"(glutamatergic synapse)|go:"GO:1903076"(regulation of protein localization to plasma membrane)|go:"GO:1903078"(positive regulation of protein localization to plasma membrane)|interpro:IPR001589(Actinin-type, actin-binding, conserved site)|interpro:IPR001605(Spectrin/pleckstrin-like)|interpro:IPR001715(Calponin-like actin-binding)|interpro:IPR001849(Pleckstrin-like)|interpro:IPR002017(Spectrin repeat)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR016343(Spectrin, beta subunit)|interpro:IPR018159|interpro:IPR036872|interpro:IPR041681|mint:Q01082|rcsb pdb:1AA2|rcsb pdb:1BKR|rcsb pdb:3EDV|reactome:R-HSA-375165|reactome:R-HSA-445095|reactome:R-HSA-5673001|reactome:R-HSA-6807878|reactome:R-HSA-9013420|reactome:R-HSA-9013424|reactome:R-HSA-9662360|reactome:R-HSA-9662361|reactome:R-HSA-9703465|reactome:R-HSA-373753|refseq:XP_005264574.1|refseq:XP_006712150.1|refseq:XP_016860268.1|refseq:XP_016860269.1|refseq:XP_016860270.1|dip:DIP-33182N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:rQJxsoEirg87umLjsEwHcQ0/blQ9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q5SVZ6	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-2555834|uniprotkb:Q7Z3Q4|ensembl:ENSP00000352920|ensembl:ENSP00000362427|ensembl:ENSP00000482579|ensembl:ENSP00000496876|uniprotkb:D3DPR7	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:zmym1_human(display_long)|uniprotkb:ZMYM1(gene name)|psi-mi:ZMYM1(display_short)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_079048.3|ensembl:ENSG00000197056(gene)|ensembl:ENST00000359858(transcript)|ensembl:ENST00000373330(transcript)|ensembl:ENST00000611874(transcript)|ensembl:ENST00000650449(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0008270"(zinc ion binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR008906(HAT dimerisation)|interpro:IPR010507(Zinc finger, MYM-type)|interpro:IPR011017(TRASH)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR025398|mint:Q5SVZ6|refseq:NP_001306884.1|ensembl:ENSP00000352920|ensembl:ENSP00000362427|ensembl:ENSP00000482579|ensembl:ENSP00000496876|refseq:NP_001276017.1|refseq:NP_001276018.1|refseq:NP_001276019.1	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:Mi/JhPhavQr3W2r/4xHAGfYjMWE9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P39880	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-719064|uniprotkb:Q75LE5|uniprotkb:Q75MT2|uniprotkb:Q75MT3|uniprotkb:Q86UJ7|uniprotkb:Q6NYH4|uniprotkb:Q9UEV5|uniprotkb:B3KV79|uniprotkb:J3KQV9|intact:EBI-28989061|ensembl:ENSP00000292535|ensembl:ENSP00000450125	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:cux1_human(display_long)|uniprotkb:CUTL1(gene name synonym)|uniprotkb:CCAAT displacement protein(gene name synonym)|uniprotkb:CUX1(gene name)|psi-mi:CUX1(display_short)|uniprotkb:Homeobox protein cux-1(gene name synonym)|uniprotkb:CDP/Cux p200(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001189472.1|refseq:NP_853530.2|refseq:NP_001189474.1|ensembl:ENSP00000292535|ensembl:ENST00000360264|ensembl:ENSP00000353401|ensembl:ENST00000425244|ensembl:ENSP00000409745|ensembl:ENSP00000450125|ensembl:ENST00000549414|ensembl:ENSP00000446630|ensembl:ENST00000550008|ensembl:ENSP00000447373|ensembl:ENST00000556210|ensembl:ENSP00000451558|refseq:NP_001189473.1|refseq:NP_852477.1|ensembl:ENSG00000257923(gene)|ensembl:ENST00000292535(transcript)|ensembl:ENST00000546411(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0000139"(Golgi membrane)|go:"GO:0000301"(retrograde transport, vesicle recycling within Golgi)|go:"GO:0000785"(chromatin)|go:"GO:0000977"(RNA polymerase II transcription regulatory region sequence-specific DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005794"(Golgi apparatus)|go:"GO:0005829"(cytosol)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0007275"(multicellular organism development)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0050775"(positive regulation of dendrite morphogenesis)|go:"GO:1990837"(sequence-specific double-stranded DNA binding)|interpro:IPR001356(Homeobox)|interpro:IPR003350(Homeodomain protein CUT)|interpro:IPR009057(Homeodomain-like)|interpro:IPR010982(Lambda repressor-like, DNA-binding)|interpro:IPR017970|mint:P39880|reactome:R-HSA-1839117|reactome:R-HSA-5655302|go:"GO:0000981"(DNA-binding transcription factor activity, RNA polymerase II-specific)	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:nzlzLWJ1xI4b6kEPnLVBKwbtwLs9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P41252	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-355303|uniprotkb:Q5TCD0|uniprotkb:Q9H588|uniprotkb:A8KAE9|uniprotkb:Q7Z3T4|ensembl:ENSP00000364794|ensembl:ENSP00000406448|ensembl:ENSP00000507144	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:syic_human(display_long)|uniprotkb:IARS1(gene name)|psi-mi:IARS1(display_short)|uniprotkb:IARS(gene name synonym)|uniprotkb:Isoleucyl-tRNA synthetase(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_002152.2|refseq:NP_038203.2|ensembl:ENSG00000196305(gene)|ensembl:ENST00000375643(transcript)|ensembl:ENST00000443024(transcript)|ensembl:ENST00000683565(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0001649"(osteoblast differentiation)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004822"(isoleucine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006418"(tRNA aminoacylation for protein translation)|go:"GO:0006428"(isoleucyl-tRNA aminoacylation)|go:"GO:0016020"(membrane)|go:"GO:0017101"(aminoacyl-tRNA synthetase multienzyme complex)|go:"GO:0051020"(GTPase binding)|go:"GO:0070062"(extracellular exosome)|interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR002300(Aminoacyl-tRNA synthetase, class Ia)|interpro:IPR002301(Isoleucyl-tRNA synthetase, class Ia)|interpro:IPR009008(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR013155(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR023586|interpro:IPR033709|mint:P41252|reactome:R-HSA-2408522|reactome:R-HSA-379716	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:maAJX/O1Ryxr5NVFQEWvXNgHXyY9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q12923	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-355227|uniprotkb:Q9UDA8|uniprotkb:Q15159|uniprotkb:Q15263|uniprotkb:Q15264|uniprotkb:Q15265|uniprotkb:Q15674|uniprotkb:Q16826|uniprotkb:Q8IWH7|uniprotkb:Q9NYN9|uniprotkb:B2RTR0|ensembl:ENSP00000407249	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:ptn13_human(display_long)|uniprotkb:PTPN13(gene name)|psi-mi:PTPN13(display_short)|uniprotkb:PNP1(gene name synonym)|uniprotkb:PTP1E(gene name synonym)|uniprotkb:PTPL1(gene name synonym)|uniprotkb:Protein-tyrosine phosphatase 1E(gene name synonym)|uniprotkb:PTP-BAS(gene name synonym)|uniprotkb:Protein-tyrosine phosphatase PTPL1(gene name synonym)|uniprotkb:Fas-associated protein-tyrosine phosphatase 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_006255.1|refseq:NP_542414.1|refseq:NP_542415.1|refseq:NP_542416.1|ensembl:ENST00000316707|ensembl:ENSP00000322675|ensembl:ENSP00000407249|ensembl:ENST00000427191|ensembl:ENSP00000408368|ensembl:ENST00000436978|ensembl:ENSP00000394794|ensembl:ENST00000511467|ensembl:ENSP00000426626|dip:DIP-40449N|ensembl:ENSG00000163629(gene)|ensembl:ENST00000411767(transcript)|go:"GO:0001650"(fibrillar center)|go:"GO:0004725"(protein tyrosine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005856"(cytoskeleton)|go:"GO:0005886"(plasma membrane)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0014066"(regulation of phosphatidylinositol 3-kinase signaling)|go:"GO:0030027"(lamellipodium)|go:"GO:0035335"(peptidyl-tyrosine dephosphorylation)|go:"GO:0036312"(phosphatidylinositol 3-kinase regulatory subunit binding)|go:"GO:0043005"(neuron projection)|go:"GO:0044297"(cell body)|go:"GO:0070062"(extracellular exosome)|interpro:IPR000242(Protein-tyrosine phosphatase, receptor/non-receptor type)|interpro:IPR000299(Band 4.1, N-terminal)|interpro:IPR000387(Protein-tyrosine phosphatase)|interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR003595(Protein-tyrosine phosphatase, catalytic)|interpro:IPR011019(KIND)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR012153(Protein-tyrosine phosphatase, non-receptor type-13)|interpro:IPR014352(FERM/acyl-CoA-binding protein, 3-helical bundle)|interpro:IPR018979|interpro:IPR018980|interpro:IPR019748|interpro:IPR019749|interpro:IPR029021|interpro:IPR029071|interpro:IPR035963|interpro:IPR036034|mint:Q12923|rcsb pdb:1D5G|rcsb pdb:1Q7X|go:"GO:0001933"(negative regulation of protein phosphorylation)|rcsb pdb:1WCH|rcsb pdb:2M0Z|rcsb pdb:2M10|rcsb pdb:3LNX|rcsb pdb:3LNY|rcsb pdb:3PDZ|rcsb pdb:5GLJ|reactome:R-HSA-1660499|reactome:R-HSA-9008059|reactome:R-HSA-9696264|reactome:R-HSA-9696270|reactome:R-HSA-9696273	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:PU9d6x+mLnjomT1yfPSVBg0i2Bk9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q5T2T1	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-2514004|ensembl:ENSP00000337907|ensembl:ENSP00000364871|ensembl:ENSP00000364884|ensembl:ENSP00000507917|uniprotkb:B2RCC9|uniprotkb:Q5T2T0|uniprotkb:B5MDZ3|uniprotkb:Q8IY28|uniprotkb:B4DWL9|uniprotkb:D3DRW3	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:mpp7_human(display_long)|uniprotkb:MPP7(gene name)|psi-mi:MPP7(display_short)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	ensembl:ENSG00000150054(gene)|ensembl:ENST00000337532(transcript)|ensembl:ENST00000375719(transcript)|ensembl:ENST00000375732(transcript)|ensembl:ENST00000683449(transcript)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005912"(adherens junction)|go:"GO:0005923"(bicellular tight junction)|go:"GO:0005938"(cell cortex)|go:"GO:0016328"(lateral plasma membrane)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0030010"(establishment of cell polarity)|go:"GO:0030054"(cell junction)|go:"GO:0031334"(positive regulation of protein-containing complex assembly)|go:"GO:0035591"(signaling adaptor activity)|go:"GO:0045296"(cadherin binding)|go:"GO:0060090"(molecular adaptor activity)|go:"GO:0070830"(bicellular tight junction assembly)|go:"GO:0071896"(protein localization to adherens junction)|interpro:IPR001452(Src homology-3)|interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR004172(L27)|interpro:IPR008144(Guanylate kinase)|interpro:IPR008145(Guanylate kinase/L-type calcium channel region)|interpro:IPR014775(L27, C-terminal)|interpro:IPR020590|interpro:IPR027417|interpro:IPR035599|interpro:IPR036028|interpro:IPR036034|interpro:IPR036892|mint:Q5T2T1|rcsb pdb:3LRA|rcsb pdb:3O46|reactome:R-HSA-9013149|reactome:R-HSA-9013404|reactome:R-HSA-9013406|reactome:R-HSA-9013408|go:"GO:0097025"(MPP7-DLG1-LIN7 complex)|reactome:R-HSA-9013409|reactome:R-HSA-9013423|refseq:XP_011517639.1|refseq:NP_001305099.1|refseq:NP_775767.2	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:QYVCkD5zsnTsCd7YsYsbQY8L7fU9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q08945	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-353771|uniprotkb:Q5BJG8|ensembl:ENSP00000278412	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:ssrp1_human(display_long)|uniprotkb:SSRP1(gene name)|psi-mi:SSRP1(display_short)|uniprotkb:FACT80(gene name synonym)|uniprotkb:Facilitates chromatin transcription complex subunit SSRP1(gene name synonym)|uniprotkb:Facilitates chromatin transcription complex 80 kDa subunit(gene name synonym)|uniprotkb:Chromatin-specific transcription elongation factor 80 kDa subunit(gene name synonym)|uniprotkb:Structure-specific recognition protein 1(gene name synonym)|uniprotkb:Recombination signal sequence recognition protein 1(gene name synonym)|uniprotkb:T160(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_003137.1|ensembl:ENSG00000149136(gene)|ensembl:ENST00000278412(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006260"(DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0031491"(nucleosome binding)|go:"GO:0035101"(FACT complex)|go:"GO:0042393"(histone binding)|reactome:R-HSA-167243|reactome:R-HSA-167246|reactome:R-HSA-167287|reactome:R-HSA-167290|reactome:R-HSA-674695|reactome:R-HSA-6796648|reactome:R-HSA-6804756|reactome:R-HSA-75955|go:"GO:1902275"(regulation of chromatin organization)|interpro:IPR000969(Structure-specific recognition protein)|interpro:IPR009071(High mobility group box, HMG)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR013719(Region of unknown function DUF1747, eukaryote)|interpro:IPR024954|interpro:IPR035417|interpro:IPR036910|interpro:IPR038167|mint:Q08945|rcsb pdb:4IFS|rcsb pdb:5UMR|rcsb pdb:5UMS|rcsb pdb:5VWE|rcsb pdb:6L1E|rcsb pdb:6L1R|rcsb pdb:6L34|rcsb pdb:6UPK|rcsb pdb:6UPL|reactome:R-HSA-112382|reactome:R-HSA-167152|reactome:R-HSA-167200|reactome:R-HSA-167238|dip:DIP-169N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:WmdGVZadHdcS6Nk9SI41xKm+OrU9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P18887	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-947466|uniprotkb:Q9HCB1|uniprotkb:Q6IBS4|ensembl:ENSP00000262887	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:xrcc1_human(display_long)|uniprotkb:XRCC1(gene name)|psi-mi:XRCC1(display_short)|uniprotkb:X-ray repair cross-complementing protein 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_006288.2|dip:DIP-39067N|ensembl:ENSG00000073050(gene)|ensembl:ENST00000262887(transcript)|go:"GO:0000012"(single strand break repair)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0000785"(chromatin)|go:"GO:0001666"(response to hypoxia)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006284"(base-excision repair)|go:"GO:0006303"(double-strand break repair via nonhomologous end joining)|go:"GO:0010033"(response to organic substance)|go:"GO:0010836"(negative regulation of protein ADP-ribosylation)|go:"GO:0019899"(enzyme binding)|go:"GO:0021587"(cerebellum morphogenesis)|go:"GO:0021766"(hippocampus development)|go:"GO:0032356"(oxidized DNA binding)|go:"GO:0033194"(response to hydroperoxide)|go:"GO:0042493"|go:"GO:0050882"(voluntary musculoskeletal movement)|go:"GO:0061819"(telomeric DNA-containing double minutes formation)|go:"GO:0070522"(ERCC4-ERCC1 complex)|go:"GO:1903518"(positive regulation of single strand break repair)|go:"GO:1904877"(positive regulation of DNA ligase activity)|go:"GO:1905765"(negative regulation of protection from non-homologous end joining at telomere)|go:"GO:1990414"(replication-born double-strand break repair via sister chromatid exchange)|go:"GO:1990599"(3' overhang single-stranded DNA endodeoxyribonuclease activity)|interpro:IPR001357(BRCT)|interpro:IPR002706(DNA-repair protein Xrcc1, N-terminal)|interpro:IPR008979(Galactose-binding like)|interpro:IPR036420|mint:P18887|rcsb pdb:1CDZ|rcsb pdb:1XNA|rcsb pdb:1XNT|rcsb pdb:2D8M|rcsb pdb:2W3O|rcsb pdb:3K75|rcsb pdb:3K77|rcsb pdb:3LQC|rcsb pdb:5E6Q|rcsb pdb:5W7X|rcsb pdb:5W7Y|reactome:R-HSA-110381|reactome:R-HSA-5649702|reactome:R-HSA-5685939|reactome:R-HSA-5696397|reactome:R-HSA-6782210	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:96hETrBzHYhHX9FC5dZpKnFcjDg9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9NZC9	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-5457961|uniprotkb:A6NEH0|uniprotkb:Q53R00|uniprotkb:Q96AY1|uniprotkb:Q9NXQ5|uniprotkb:Q9UFH3|uniprotkb:Q9UI93|ensembl:ENSP00000349823|ensembl:ENSP00000350940	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:smal1_human(display_long)|uniprotkb:SMARCAL1(gene name)|psi-mi:SMARCAL1(display_short)|uniprotkb:HARP(gene name synonym)|uniprotkb:HepA-related protein(gene name synonym)|uniprotkb:Sucrose nonfermenting protein 2-like 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001120679.1|refseq:NP_054859.2|refseq:XP_005246688.1|refseq:XP_005246689.1|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0016787"(hydrolase activity)|go:"GO:0031297"(replication fork processing)|go:"GO:0035861"(site of double-strand break)|go:"GO:0036310"(ATP-dependent DNA/DNA annealing activity)|go:"GO:0043596"(nuclear replication fork)|go:"GO:0048478"(replication fork protection)|go:"GO:0070615"|ensembl:ENSG00000138375(gene)|ensembl:ENST00000357276(transcript)|ensembl:ENST00000358207(transcript)|go:"GO:0004386"(helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006281"(DNA repair)|go:"GO:0006303"(double-strand break repair via nonhomologous end joining)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|interpro:IPR000330(SNF2-related)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR010003(HepA-related)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|interpro:IPR030101|interpro:IPR038718|mint:Q9NZC9|rcsb pdb:4MQV|go:"GO:0090656"(t-circle formation)	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:sUz7fctEmC8ajY7I9H474RGxhag9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P21333	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-350432|uniprotkb:Q8NF52|intact:EBI-1103234|ensembl:ENSP00000358866|uniprotkb:Q5HY53|uniprotkb:Q5HY55|uniprotkb:E9KL45	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:flna_human(display_long)|uniprotkb:FLNA(gene name)|psi-mi:FLNA(display_short)|uniprotkb:FLN(gene name synonym)|uniprotkb:FLN1(gene name synonym)|uniprotkb:Alpha-filamin(gene name synonym)|uniprotkb:Filamin-1(gene name synonym)|uniprotkb:Endothelial actin-binding protein(gene name synonym)|uniprotkb:Actin-binding protein 280(gene name synonym)|uniprotkb:Non-muscle filamin(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	go:"GO:0007195"(adenylate cyclase-inhibiting dopamine receptor signaling pathway)|go:"GO:1902396"(protein localization to bicellular tight junction)|refseq:NP_001104026.1|refseq:NP_001447.2|ensembl:ENSG00000196924(gene)|ensembl:ENST00000369850(transcript)|go:"GO:0001525"(angiogenesis)|go:"GO:0001664"(G protein-coupled receptor binding)|go:"GO:0001837"(epithelial to mesenchymal transition)|go:"GO:0001974"(blood vessel remodeling)|go:"GO:0003007"(heart morphogenesis)|go:"GO:0003723"(RNA binding)|go:"GO:0005080"(protein kinase C binding)|go:"GO:0005576"(extracellular region)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005802"(trans-Golgi network)|go:"GO:0005829"(cytosol)|go:"GO:0005884"(actin filament)|go:"GO:0005886"(plasma membrane)|go:"GO:0005903"(brush border)|go:"GO:0005911"(cell-cell junction)|go:"GO:0005925"(focal adhesion)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0048680"(positive regulation of axon regeneration)|go:"GO:0050808"(synapse organization)|go:"GO:0050821"(protein stabilization)|go:"GO:0051015"(actin filament binding)|go:"GO:0051020"(GTPase binding)|go:"GO:0051220"(cytoplasmic sequestering of protein)|go:"GO:0051764"(actin crosslink formation)|go:"GO:0060271"(cilium assembly)|go:"GO:0070062"(extracellular exosome)|go:"GO:0070527"(platelet aggregation)|go:"GO:0071526"(semaphorin-plexin signaling pathway)|go:"GO:0072659"(protein localization to plasma membrane)|go:"GO:0090042"(tubulin deacetylation)|go:"GO:0090307"(mitotic spindle assembly)|go:"GO:0097368"(establishment of Sertoli cell barrier)|go:"GO:0097440"(apical dendrite)|go:"GO:0098794"(postsynapse)|go:"GO:0098978"(glutamatergic synapse)|go:"GO:1900026"(positive regulation of substrate adhesion-dependent cell spreading)|go:"GO:1901381"(positive regulation of potassium ion transmembrane transport)|go:"GO:0046332"(SMAD binding)|go:"GO:0010977"(negative regulation of neuron projection development)|go:"GO:0015459"(potassium channel regulator activity)|go:"GO:0015629"(actin cytoskeleton)|go:"GO:0016020"(membrane)|go:"GO:0016479"(negative regulation of transcription by RNA polymerase I)|go:"GO:0019900"(kinase binding)|go:"GO:0008134"(transcription factor binding)|go:"GO:0021943"(formation of radial glial scaffolds)|go:"GO:0021987"(cerebral cortex development)|go:"GO:0030018"(Z disc)|go:"GO:0030334"(regulation of cell migration)|go:"GO:0030863"(cortical cytoskeleton)|go:"GO:0031267"(small GTPase binding)|go:"GO:0031523"(Myb complex)|go:"GO:0031532"(actin cytoskeleton reorganization)|go:"GO:0031852"(mu-type opioid receptor binding)|go:"GO:0032233"(positive regulation of actin filament bundle assembly)|go:"GO:0032432"(actin filament bundle)|go:"GO:0034394"(protein localization to cell surface)|go:"GO:0034988"(Fc-gamma receptor I complex binding)|go:"GO:0042177"(negative regulation of protein catabolic process)|go:"GO:0042307"(positive regulation of protein import into nucleus)|go:"GO:0042789"(mRNA transcription by RNA polymerase II)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043066"(negative regulation of apoptotic process)|go:"GO:0043113"(receptor clustering)|go:"GO:0043123"(positive regulation of I-kappaB kinase/NF-kappaB signaling)|go:"GO:0043198"(dendritic shaft)|go:"GO:0043204"(perikaryon)|go:"GO:0043433"(negative regulation of DNA-binding transcription factor activity)|go:"GO:0044295"(axonal growth cone)|go:"GO:0044319"(wound healing, spreading of cells)|go:"GO:0044325"(transmembrane transporter binding)|go:"GO:0045022"(early endosome to late endosome transport)|go:"GO:0045184"(establishment of protein localization)|go:"GO:0045216"(cell-cell junction organization)|go:"GO:0045296"(cadherin binding)|reactome:R-HSA-114608|reactome:R-HSA-430116|reactome:R-HSA-446353|reactome:R-HSA-5627123|reactome:R-HSA-8983711|rcsb pdb:6EW1|go:"GO:1905031"(regulation of membrane repolarization during cardiac muscle cell action potential)|go:"GO:2000179"(positive regulation of neural precursor cell proliferation)|go:"GO:2001046"(positive regulation of integrin-mediated signaling pathway)|go:"GO:2001224"(positive regulation of neuron migration)|interpro:IPR001298(Filamin/ABP280 repeat)|interpro:IPR001589(Actinin-type, actin-binding, conserved site)|interpro:IPR001715(Calponin-like actin-binding)|interpro:IPR013783(Immunoglobulin-like fold)|interpro:IPR014756(Immunoglobulin E-set)|interpro:IPR017868|interpro:IPR036872|interpro:IPR044801|mint:P21333|rcsb pdb:2AAV|rcsb pdb:2BP3|rcsb pdb:2BRQ|rcsb pdb:2J3S|rcsb pdb:2JF1|rcsb pdb:2K3T|rcsb pdb:2K7P|rcsb pdb:2K7Q|rcsb pdb:2MTP|rcsb pdb:2W0P|rcsb pdb:2WFN|rcsb pdb:3CNK|rcsb pdb:3HOC|rcsb pdb:3HOP|rcsb pdb:3HOR|rcsb pdb:3ISW|rcsb pdb:3RGH|rcsb pdb:4M9P|rcsb pdb:4P3W|rcsb pdb:5XR1|rcsb pdb:6D8C|go:"GO:1905000"(regulation of membrane repolarization during atrial cardiac muscle cell action potential)|dip:DIP-1136N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:ZxGK5OSMy8cNsyt7Ax2KXb8bn9M9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q12959	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-357481|ensembl:ENSP00000391732|ensembl:ENSP00000407531|ensembl:ENSP00000499437|uniprotkb:Q12958|uniprotkb:A5YKK7|uniprotkb:B7ZMM0|uniprotkb:B9EIQ5|uniprotkb:D3DXB8|uniprotkb:D3DXB9|uniprotkb:B4DGU1|uniprotkb:B4DGZ8|uniprotkb:E7EWL7|uniprotkb:E9PG21	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:dlg1_human(display_long)|uniprotkb:DLG1(gene name)|psi-mi:DLG1(display_short)|uniprotkb:Synapse-associated protein 97(gene name synonym)|uniprotkb:hDlg(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	reactome:R-HSA-9617324|reactome:R-HSA-9620244|ensembl:ENST00000419354(transcript)|ensembl:ENST00000448528(transcript)|ensembl:ENST00000670935(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0001658"(branching involved in ureteric bud morphogenesis)|go:"GO:0001771"(immunological synapse formation)|go:"GO:0001772"(immunological synapse)|go:"GO:0001935"(endothelial cell proliferation)|go:"GO:0002088"(lens development in camera-type eye)|ensembl:ENSG00000075711(gene)|go:"GO:0004385"(guanylate kinase activity)|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005604"(basement membrane)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0005789"(endoplasmic reticulum membrane)|go:"GO:0005794"(Golgi apparatus)|go:"GO:0005829"(cytosol)|go:"GO:0005874"(microtubule)|go:"GO:0005886"(plasma membrane)|go:"GO:0005911"(cell-cell junction)|go:"GO:0005923"(bicellular tight junction)|go:"GO:0007015"(actin filament organization)|go:"GO:0007163"(establishment or maintenance of cell polarity)|go:"GO:0007268"(chemical synaptic transmission)|go:"GO:0043113"(receptor clustering)|go:"GO:0043219"(lateral loop)|go:"GO:0043268"(positive regulation of potassium ion transport)|go:"GO:0045197"(establishment or maintenance of epithelial cell apical/basal polarity)|go:"GO:0045296"(cadherin binding)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0048608"(reproductive structure development)|go:"GO:0048704"(embryonic skeletal system morphogenesis)|go:"GO:0043622"(cortical microtubule organization)|go:"GO:0048745"(smooth muscle tissue development)|go:"GO:0050680"(negative regulation of epithelial cell proliferation)|go:"GO:0051660"(establishment of centrosome localization)|go:"GO:0051898"(negative regulation of protein kinase B signaling)|go:"GO:0060022"(hard palate development)|go:"GO:0060090"(molecular adaptor activity)|go:"GO:0070062"(extracellular exosome)|go:"GO:0070373"(negative regulation of ERK1 and ERK2 cascade)|go:"GO:0070830"(bicellular tight junction assembly)|go:"GO:0072659"(protein localization to plasma membrane)|go:"GO:0097016"(L27 domain binding)|go:"GO:0097025"(MPP7-DLG1-LIN7 complex)|go:"GO:0097060"(synaptic membrane)|go:"GO:0097120"(receptor localization to synapse)|go:"GO:0098609"(cell-cell adhesion)|go:"GO:0098839"(postsynaptic density membrane)|go:"GO:0098911"(regulation of ventricular cardiac muscle cell action potential)|go:"GO:0098919"(structural constituent of postsynaptic density)|go:"GO:0098978"(glutamatergic synapse)|go:"GO:0099645"(neurotransmitter receptor localization to postsynaptic specialization membrane)|go:"GO:1902305"(regulation of sodium ion transmembrane transport)|go:"GO:1902473"(regulation of protein localization to synapse)|go:"GO:1903078"(positive regulation of protein localization to plasma membrane)|go:"GO:1903286"(regulation of potassium ion import)|go:"GO:1903753"(negative regulation of p38MAPK cascade)|go:"GO:1903760"(regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization)|go:"GO:1903764"(regulation of potassium ion export across plasma membrane)|go:"GO:2000134"(negative regulation of G1/S transition of mitotic cell cycle)|interpro:IPR001452(Src homology-3)|go:"GO:0044325"(transmembrane transporter binding)|go:"GO:0045121"(membrane raft)|refseq:NP_001091894.1|refseq:NP_001191315.1|refseq:NP_001191316.1|refseq:NP_001191317.1|refseq:NP_004078.2|go:"GO:0008092"(cytoskeletal protein binding)|go:"GO:0008284"(positive regulation of cell population proliferation)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0014704"(intercalated disc)|go:"GO:0015459"(potassium channel regulator activity)|go:"GO:0016323"(basolateral plasma membrane)|go:"GO:0016324"(apical plasma membrane)|go:"GO:0016328"(lateral plasma membrane)|go:"GO:0019901"(protein kinase binding)|go:"GO:0019902"(phosphatase binding)|go:"GO:0030054"(cell junction)|go:"GO:0030432"(peristalsis)|go:"GO:0030838"(positive regulation of actin filament polymerization)|go:"GO:0030866"(cortical actin cytoskeleton organization)|go:"GO:0030953"(astral microtubule organization)|go:"GO:0031253"(cell projection membrane)|go:"GO:0031434"(mitogen-activated protein kinase kinase binding)|go:"GO:0031579"(membrane raft organization)|go:"GO:0031594"(neuromuscular junction)|go:"GO:0031641"(regulation of myelination)|go:"GO:0008022"(protein C-terminus binding)|go:"GO:0032147"(activation of protein kinase activity)|go:"GO:0033268"(node of Ranvier)|go:"GO:0034629"|go:"GO:0035748"(myelin sheath abaxonal region)|go:"GO:0042110"(T cell activation)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0042383"(sarcolemma)|go:"GO:0042391"(regulation of membrane potential)|go:"GO:0042982"(amyloid precursor protein metabolic process)|go:"GO:0043005"(neuron projection)|interpro:IPR019583|interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR019590|interpro:IPR020590|interpro:IPR027417|interpro:IPR036028|interpro:IPR036034|interpro:IPR036892|mint:Q12959|rcsb pdb:1PDR|rcsb pdb:2M3M|rcsb pdb:2OQS|rcsb pdb:2X7Z|rcsb pdb:3LRA|rcsb pdb:3RL7|rcsb pdb:3RL8|rcsb pdb:3W9Y|rcsb pdb:4AMH|rcsb pdb:4G69|reactome:R-HSA-399719|interpro:IPR004172(L27)|interpro:IPR008144(Guanylate kinase)|reactome:R-HSA-438066|interpro:IPR008145(Guanylate kinase/L-type calcium channel region)|interpro:IPR015143(L27-1)|interpro:IPR016313("Membrane-associated guanylate kinase (MAGUK) scaffold protein")|reactome:R-HSA-442982|reactome:R-HSA-447038|reactome:R-HSA-451308|reactome:R-HSA-5673001|reactome:R-HSA-8849932|reactome:R-HSA-9609736|refseq:XP_011510804.1|refseq:XP_011510807.1|refseq:XP_011510808.1|refseq:XP_005269346.1|refseq:NP_001277912.1|refseq:XP_016861289.1|refseq:XP_016861290.1|refseq:XP_016861291.1|refseq:XP_016861292.1|refseq:XP_016861294.1|refseq:XP_016861295.1|refseq:XP_016861296.1|refseq:XP_016861297.1|refseq:XP_016861298.1|refseq:XP_016861305.1|refseq:XP_016861306.1|refseq:XP_016861307.1|refseq:XP_016861308.1|refseq:XP_016861309.1|dip:DIP-33957N|refseq:XP_011510805.1|refseq:XP_016861299.1	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:ax5sUROdL8kF59RhocRWG6tUUkc9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9Y5B9	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-1046849|uniprotkb:Q6GMT8|uniprotkb:Q6P2F1|uniprotkb:Q6PJM1|uniprotkb:Q9NRX0|ensembl:ENSP00000216297	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:sp16h_human(display_long)|uniprotkb:Facilitates chromatin transcription complex subunit SPT16(gene name synonym)|uniprotkb:FACT 140 kDa subunit(gene name synonym)|uniprotkb:FACTp140(gene name synonym)|uniprotkb:Chromatin-specific transcription elongation factor 140 kDa subunit(gene name synonym)|uniprotkb:SUPT16H(gene name)|psi-mi:SUPT16H(display_short)|uniprotkb:FACT140(gene name synonym)|uniprotkb:FACTP140(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	ensembl:ENSG00000092201(gene)|ensembl:ENST00000216297(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006260"(DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0006337"(nucleosome disassembly)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0006368"(transcription elongation from RNA polymerase II promoter)|go:"GO:0031491"(nucleosome binding)|go:"GO:0032786"(positive regulation of DNA-templated transcription, elongation)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0034724"(DNA replication-independent chromatin organization)|go:"GO:0035101"(FACT complex)|interpro:IPR000994(Peptidase M24, catalytic core)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR013719(Region of unknown function DUF1747, eukaryote)|interpro:IPR013953(FACT complex subunit Spt16p/Cdc68p)|interpro:IPR029148|interpro:IPR029149|interpro:IPR033825|interpro:IPR036005|interpro:IPR040258|mint:Q9Y5B9|rcsb pdb:4Z2M|rcsb pdb:4Z2N|rcsb pdb:5E5B|rcsb pdb:5UMT|rcsb pdb:5UMU|rcsb pdb:5XM2|rcsb pdb:6UPK|rcsb pdb:6UPL|reactome:R-HSA-112382|reactome:R-HSA-167152|reactome:R-HSA-167200|reactome:R-HSA-167238|reactome:R-HSA-167243|reactome:R-HSA-167246|reactome:R-HSA-167287|reactome:R-HSA-167290|reactome:R-HSA-674695|reactome:R-HSA-6796648|reactome:R-HSA-6804756|reactome:R-HSA-75955|refseq:NP_009123.1|dip:DIP-42757N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:jLK5dOF3mEyI0UbZhcNgtdlG+WI9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q14191	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-368417|uniprotkb:A1KYY9|ensembl:ENSP00000298139	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:wrn_human(display_long)|uniprotkb:WRN(gene name)|psi-mi:WRN(display_short)|uniprotkb:RECQ3(gene name synonym)|uniprotkb:RECQL2(gene name synonym)|uniprotkb:Exonuclease WRN(gene name synonym)|uniprotkb:RecQ protein-like 2(gene name synonym)|uniprotkb:DNA helicase, RecQ-like type 3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_000544.2|go:"GO:0061820"(telomeric D-loop disassembly)|go:"GO:0061821"(telomeric D-loop binding)|go:"GO:0061849"(telomeric G-quadruplex DNA binding)|go:"GO:0070337"(3'-flap-structured DNA binding)|go:"GO:0071480"(cellular response to gamma radiation)|go:"GO:0090399"(replicative senescence)|go:"GO:0090656"(t-circle formation)|go:"GO:0098530"(positive regulation of strand invasion)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|go:"GO:1902570"(protein localization to nucleolus)|go:"GO:1905773"(8-hydroxy-2'-deoxyguanosine DNA binding)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR002121(Helicase and RNase D C-terminal, HRDC)|interpro:IPR002562(3'-5' exonuclease)|interpro:IPR004589(DNA helicase, ATP-dependent, RecQ type)|interpro:IPR010997(HRDC-like)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR018982|interpro:IPR027417|interpro:IPR029491|interpro:IPR032284|interpro:IPR036388|interpro:IPR036390|interpro:IPR036397|mint:Q14191|rcsb pdb:2AXL|rcsb pdb:2DGZ|rcsb pdb:2E1E|rcsb pdb:2E1F|rcsb pdb:2FBT|rcsb pdb:2FBV|rcsb pdb:2FBX|go:"GO:0061749"(forked DNA-dependent helicase activity)|rcsb pdb:2FBY|rcsb pdb:3AAF|rcsb pdb:6TYV|rcsb pdb:6YHR|reactome:R-HSA-174414|reactome:R-HSA-174437|reactome:R-HSA-3108214|reactome:R-HSA-5685938|reactome:R-HSA-5685942|reactome:R-HSA-5693554|reactome:R-HSA-5693568|reactome:R-HSA-5693579|reactome:R-HSA-5693607|reactome:R-HSA-5693616|reactome:R-HSA-6804756|reactome:R-HSA-69473|rcsb pdb:2FC0|ensembl:ENSG00000165392(gene)|ensembl:ENST00000298139(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0000400"(four-way junction DNA binding)|go:"GO:0000403"(Y-form DNA binding)|go:"GO:0000405"(bubble DNA binding)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000724"(double-strand break repair via homologous recombination)|go:"GO:0000731"(DNA synthesis involved in DNA repair)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003677"(DNA binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0003682"(chromatin binding)|go:"GO:0004527"(exonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005657"(replication fork)|go:"GO:0005694"(chromosome)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0007420"(brain development)|go:"GO:0007568"(aging)|go:"GO:0007569"(cell aging)|go:"GO:0008408"(3'-5' exonuclease activity)|go:"GO:0009267"(cellular response to starvation)|go:"GO:0009378"(four-way junction helicase activity)|go:"GO:0010225"(response to UV-C)|go:"GO:0010259"(multicellular organism aging)|go:"GO:0016607"(nuclear speck)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0030145"(manganese ion binding)|go:"GO:0031297"(replication fork processing)|go:"GO:0005730"(nucleolus)|go:"GO:0032201"(telomere maintenance via semi-conservative replication)|go:"GO:0032405"(MutLalpha complex binding)|go:"GO:0032508"(DNA duplex unwinding)|go:"GO:0040009"(regulation of growth rate)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0042981"(regulation of apoptotic process)|go:"GO:0043005"(neuron projection)|go:"GO:0043138"(3'-5' DNA helicase activity)|go:"GO:0005813"(centrosome)|go:"GO:0006259"(DNA metabolic process)|go:"GO:0006260"(DNA replication)|go:"GO:0044806"(G-quadruplex DNA unwinding)|go:"GO:0006268"(DNA unwinding involved in DNA replication)|go:"GO:0044877"(protein-containing complex binding)|go:"GO:0051345"(positive regulation of hydrolase activity)|go:"GO:0051880"(G-quadruplex DNA binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006284"(base-excision repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006310"(DNA recombination)|dip:DIP-31380N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:AKmM4xnux0/lA9uEzk7yvug/Wng9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9UGN5	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-2795348|uniprotkb:Q8TEU4|uniprotkb:Q9NUV2|uniprotkb:Q9UMR4|uniprotkb:Q9Y6C8|ensembl:ENSP00000250416	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:parp2_human(display_long)|uniprotkb:PARP2(gene name)|psi-mi:PARP2(display_short)|uniprotkb:ADPRT2(gene name synonym)|uniprotkb:ADPRTL2(gene name synonym)|uniprotkb:"NAD(+) ADP-ribosyltransferase 2"(gene name synonym)|uniprotkb:Poly[ADP-ribose] synthase 2(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 2(gene name synonym)|uniprotkb:DNA ADP-ribosyltransferase PARP2(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase PARP2(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001036083.1|refseq:NP_005475.2|ensembl:ENSG00000129484(gene)|ensembl:ENST00000250416(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003682"(chromatin binding)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006281"(DNA repair)|go:"GO:0006284"(base-excision repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0016570"(histone modification)|go:"GO:0018312"(peptidyl-serine ADP-ribosylation)|go:"GO:0030592"(DNA ADP-ribosylation)|go:"GO:0031491"(nucleosome binding)|go:"GO:0061051"(positive regulation of cell growth involved in cardiac muscle cell development)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0090734"(site of DNA damage)|go:"GO:0097191"(extrinsic apoptotic signaling pathway)|go:"GO:0140294"(NAD DNA ADP-ribosyltransferase activity)|go:"GO:1901215"(negative regulation of neuron death)|go:"GO:1990404"(protein ADP-ribosylase activity)|interpro:IPR004102("Poly(ADP-ribose) polymerase, regulatory region")|interpro:IPR008893(WGR)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR036616|go:"GO:0005634"(nucleus)|interpro:IPR036930|mint:Q9UGN5|rcsb pdb:3KCZ|rcsb pdb:3KJD|rcsb pdb:4PJV|rcsb pdb:4TVJ|rcsb pdb:4ZZX|rcsb pdb:4ZZY|rcsb pdb:5D5K|rcsb pdb:5DSY|rcsb pdb:6F1K|rcsb pdb:6F5B|rcsb pdb:6F5F|rcsb pdb:6TX3|rcsb pdb:6USJ|rcsb pdb:6X0L|rcsb pdb:6X0M|rcsb pdb:6X0N|rcsb pdb:7AEO|reactome:R-HSA-110362|reactome:R-HSA-5685939|reactome:R-HSA-5696394|reactome:R-HSA-5696395|reactome:R-HSA-5696400|dip:DIP-48934N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:0sLs7K5dQNmmhUwnGT9UIvparjU9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P49916	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-1753381|intact:EBI-1058758|uniprotkb:Q16714|uniprotkb:Q6NVK3|ensembl:ENSP00000367787|uniprotkb:E5KLB5|uniprotkb:E5KLB6	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:dnli3_human(display_long)|uniprotkb:LIG3(gene name)|psi-mi:LIG3(display_short)|uniprotkb:DNA ligase III(gene name synonym)|uniprotkb:Polydeoxyribonucleotide synthase [ATP] 3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_002302.2|refseq:NP_039269.2|go:"GO:0007005"(mitochondrion organization)|go:"GO:0007049"(cell cycle)|go:"GO:0008270"(zinc ion binding)|go:"GO:0043504"(mitochondrial DNA repair)|go:"GO:0051301"(cell division)|go:"GO:0070421"(DNA ligase III-XRCC1 complex)|go:"GO:0071897"(DNA biosynthetic process)|go:"GO:0090298"(negative regulation of mitochondrial DNA replication)|go:"GO:0097681"(double-strand break repair via alternative nonhomologous end joining)|interpro:IPR000977(ATP-dependent DNA ligase)|interpro:IPR001357(BRCT)|interpro:IPR001510(Zinc finger, PARP-type)|interpro:IPR012308(DNA ligase, N-terminal)|interpro:IPR012309(ATP dependent DNA ligase, C-terminal)|interpro:IPR012310(ATP dependent DNA ligase, central)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR016059(ATP-dependent DNA ligase, conserved site)|interpro:IPR031916|interpro:IPR036420|interpro:IPR036599|interpro:IPR036957|mint:P49916|rcsb pdb:1IMO|rcsb pdb:1IN1|rcsb pdb:1UW0|rcsb pdb:3L2P|rcsb pdb:3PC7|rcsb pdb:3PC8|rcsb pdb:3QVG|rcsb pdb:6WH1|reactome:R-HSA-110381|reactome:R-HSA-5649702|reactome:R-HSA-5685939|reactome:R-HSA-5696397|reactome:R-HSA-6782210|ensembl:ENSG00000005156(gene)|ensembl:ENST00000378526(transcript)|go:"GO:0000724"(double-strand break repair via homologous recombination)|go:"GO:0003677"(DNA binding)|go:"GO:0003909"(DNA ligase activity)|go:"GO:0003910"("DNA ligase (ATP) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005739"(mitochondrion)|go:"GO:0006266"(DNA ligation)|go:"GO:0006273"(lagging strand elongation)|go:"GO:0006287"(base-excision repair, gap-filling)|go:"GO:0006288"(base-excision repair, DNA ligation)|go:"GO:0006302"(double-strand break repair)|refseq:XP_016880113.1	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:+GqYPnth9+VqCoh1TvPG4yEDLeo9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q86WJ1	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-2340020|intact:EBI-2857214|uniprotkb:Q53EZ3|uniprotkb:Q9NVV8|uniprotkb:Q86XH3|uniprotkb:Q5VXX7|uniprotkb:A5YM64|uniprotkb:Q6PK83|uniprotkb:Q96SP3|uniprotkb:Q9BVJ1|uniprotkb:Q6DD94|uniprotkb:Q96HF7|uniprotkb:B4DDE1|uniprotkb:B5MDZ7|ensembl:ENSP00000358262	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:chd1l_human(display_long)|uniprotkb:CHD1L(gene name)|psi-mi:CHD1L(display_short)|uniprotkb:ALC1(gene name synonym)|uniprotkb:Amplified in liver cancer protein 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001243267.1|refseq:NP_004275.4|dip:DIP-48933N|refseq:NP_001335382.1|refseq:NP_078844.2|refseq:NP_001243266.1|refseq:NP_001335385.1|refseq:NP_001335386.1|refseq:NP_001335387.1|refseq:NP_001335388.1|refseq:NP_001335389.1|refseq:NP_001335390.1|refseq:NP_001335391.1|refseq:NP_001335392.1|refseq:NP_001335393.1|refseq:NP_001335394.1|refseq:NP_001335395.1|ensembl:ENSG00000131778(gene)|ensembl:ENST00000369258(transcript)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006281"(DNA repair)|go:"GO:0006338"(chromatin remodeling)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0070615"|go:"GO:0140603"(obsolete ATP hydrolysis activity)|interpro:IPR000330(SNF2-related)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR002464(DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site)|interpro:IPR002589(Appr-1-p processing)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|interpro:IPR031053|interpro:IPR038718|interpro:IPR043472|mint:Q86WJ1|rcsb pdb:6ZHX|rcsb pdb:6ZHY|reactome:R-HSA-5696395|reactome:R-HSA-5696400	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:e8j47togv1uhkm+TwhWyG6OxiiE9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9H2K2	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-4398527|uniprotkb:Q9H8F2|uniprotkb:Q9HAS4|uniprotkb:B2RBD3|ensembl:ENSP00000360689	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:tnks2_human(display_long)|uniprotkb:TNKS2(gene name)|psi-mi:TNKS2(display_short)|uniprotkb:PARP5B(gene name synonym)|uniprotkb:TANK2(gene name synonym)|uniprotkb:TNKL(gene name synonym)|uniprotkb:Poly [ADP-ribose] polymerase 5B(gene name synonym)|uniprotkb:TNKS-2(gene name synonym)|uniprotkb:TRF1-interacting ankyrin-related ADP-ribose polymerase 2(gene name synonym)|uniprotkb:Tankyrase II(gene name synonym)|uniprotkb:Tankyrase-like protein(gene name synonym)|uniprotkb:Tankyrase-related protein(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 6(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase tankyrase-2(gene name synonym)|uniprotkb:Tankyrase-2(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_079511.1|dip:DIP-42098N|rcsb pdb:3P0Q|rcsb pdb:3TWQ|rcsb pdb:3TWR|rcsb pdb:3TWS|rcsb pdb:3TWT|rcsb pdb:3TWU|rcsb pdb:3TWV|rcsb pdb:3TWW|rcsb pdb:3TWX|rcsb pdb:3U9H|rcsb pdb:3U9Y|rcsb pdb:3UA9|rcsb pdb:3W51|rcsb pdb:4AVU|rcsb pdb:4AVW|rcsb pdb:4BFP|rcsb pdb:4BJ9|rcsb pdb:4BJB|rcsb pdb:4BJC|rcsb pdb:4BS4|rcsb pdb:4BU3|rcsb pdb:4BU5|rcsb pdb:4BU6|rcsb pdb:4BU7|rcsb pdb:4BU8|rcsb pdb:4BU9|rcsb pdb:4BUA|rcsb pdb:4BUD|rcsb pdb:4BUE|rcsb pdb:4BUF|rcsb pdb:4BUI|rcsb pdb:4BUS|rcsb pdb:4BUT|rcsb pdb:4BUU|rcsb pdb:4BUV|rcsb pdb:4BUW|rcsb pdb:4BUX|rcsb pdb:4BUY|rcsb pdb:4HKI|rcsb pdb:4HKK|rcsb pdb:4HKN|ensembl:ENSG00000107854(gene)|ensembl:ENST00000371627(transcript)|go:"GO:0000139"(Golgi membrane)|go:"GO:0000209"(protein polyubiquitination)|go:"GO:0000242"(pericentriolar material)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005635"(nuclear envelope)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0019899"(enzyme binding)|go:"GO:0032212"(positive regulation of telomere maintenance via telomerase)|go:"GO:0035264"(multicellular organism growth)|go:"GO:0040014"(regulation of multicellular organism growth)|go:"GO:0046872"(metal ion binding)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0070198"(protein localization to chromosome, telomeric region)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|go:"GO:1904355"(positive regulation of telomere capping)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1990404"(protein ADP-ribosylase activity)|interpro:IPR001660(Sterile alpha motif SAM)|interpro:IPR002110(Ankyrin)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR013761(Sterile alpha motif-type)|interpro:IPR020683|interpro:IPR036770|mint:Q9H2K2|rcsb pdb:2Y0I|rcsb pdb:3KR7|rcsb pdb:3KR8|rcsb pdb:3MHJ|rcsb pdb:3MHK|rcsb pdb:3P0N|rcsb pdb:3P0P|rcsb pdb:6TKP|rcsb pdb:6TKQ|rcsb pdb:6TKR|rcsb pdb:6TKS|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5545619|reactome:R-HSA-5689880|reactome:R-HSA-8948751|rcsb pdb:6TKN|rcsb pdb:4HL5|rcsb pdb:4HLF|rcsb pdb:4HLG|rcsb pdb:4HLH|rcsb pdb:4HLK|rcsb pdb:4HLM|rcsb pdb:4HMH|rcsb pdb:4HYF|rcsb pdb:4IUE|rcsb pdb:4J1Z|rcsb pdb:4J21|rcsb pdb:4J22|rcsb pdb:4J3L|rcsb pdb:4J3M|rcsb pdb:4KZL|rcsb pdb:4KZQ|rcsb pdb:4KZU|rcsb pdb:4L09|rcsb pdb:4L0B|rcsb pdb:4L0I|rcsb pdb:4L0T|rcsb pdb:4L0V|rcsb pdb:4L10|rcsb pdb:4L2F|rcsb pdb:4L2G|rcsb pdb:4L2K|rcsb pdb:4L31|rcsb pdb:4L32|rcsb pdb:4L33|rcsb pdb:4L34|rcsb pdb:4M7B|rcsb pdb:4PML|rcsb pdb:4PNL|rcsb pdb:4PNM|rcsb pdb:4PNN|rcsb pdb:4PNQ|rcsb pdb:4PNR|rcsb pdb:4PNS|rcsb pdb:4PNT|rcsb pdb:4TJU|rcsb pdb:4TJW|rcsb pdb:4TJY|rcsb pdb:4TK0|rcsb pdb:4TK5|rcsb pdb:4TKF|rcsb pdb:4TKG|rcsb pdb:4TKI|rcsb pdb:4UFU|rcsb pdb:4UFY|rcsb pdb:4UHG|rcsb pdb:4UI3|rcsb pdb:4UI4|rcsb pdb:4UI5|rcsb pdb:4UI6|rcsb pdb:4UI7|rcsb pdb:4UI8|rcsb pdb:4UVL|rcsb pdb:4UVN|rcsb pdb:4UVO|rcsb pdb:4UVP|rcsb pdb:4UVS|rcsb pdb:4UVT|rcsb pdb:4UVU|rcsb pdb:4UVV|rcsb pdb:4UVW|rcsb pdb:4UVX|rcsb pdb:4UVY|rcsb pdb:4UVZ|rcsb pdb:4UX4|rcsb pdb:4W5I|rcsb pdb:4Z68|rcsb pdb:5ADQ|rcsb pdb:5ADR|rcsb pdb:5ADS|rcsb pdb:5ADT|rcsb pdb:5AEH|rcsb pdb:5AKU|rcsb pdb:5AKW|rcsb pdb:5AL1|rcsb pdb:5AL2|rcsb pdb:5AL3|rcsb pdb:5AL4|rcsb pdb:5AL5|rcsb pdb:5BXO|rcsb pdb:5BXU|rcsb pdb:5C5P|rcsb pdb:4L0S|rcsb pdb:5C5Q|rcsb pdb:5C5R|rcsb pdb:5DCZ|rcsb pdb:5FPF|rcsb pdb:5FPG|rcsb pdb:5JRT|rcsb pdb:5NOB|rcsb pdb:5NSP|rcsb pdb:5NUT|rcsb pdb:5OWS|rcsb pdb:5OWT|rcsb pdb:6TG4|rcsb pdb:6TKM	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:pf0mQR/in4ShtYc1xmCF042/v/A9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q14527	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-1045161|uniprotkb:Q14536|uniprotkb:Q16051|uniprotkb:Q7KYJ6|uniprotkb:Q86YA5|uniprotkb:Q92652|uniprotkb:Q96KM9|uniprotkb:D3DNH3|ensembl:ENSP00000308944|ensembl:ENSP00000376644|ensembl:ENSP00000420429	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:hltf_human(display_long)|uniprotkb:SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3(gene name synonym)|uniprotkb:Sucrose nonfermenting protein 2-like 3(gene name synonym)|uniprotkb:DNA-binding protein/plasminogen activator inhibitor 1 regulator(gene name synonym)|uniprotkb:HIP116(gene name synonym)|uniprotkb:RING finger protein 80(gene name synonym)|uniprotkb:HLTF(gene name)|psi-mi:HLTF(display_short)|uniprotkb:HIP116A(gene name synonym)|uniprotkb:RNF80(gene name synonym)|uniprotkb:SNF2L3(gene name synonym)|uniprotkb:ZBU1(gene name synonym)|uniprotkb:SMARCA3(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase HLTF(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001305863.1|refseq:NP_001305864.1|refseq:NP_003062.2|refseq:NP_620636.1|refseq:XP_016862568.1|dip:DIP-29828N|ensembl:ENSG00000071794(gene)|ensembl:ENST00000310053(transcript)|ensembl:ENST00000392912(transcript)|ensembl:ENST00000494055(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0004386"(helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006325"(chromatin organization)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016020"(membrane)|go:"GO:0016567"(protein ubiquitination)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070615"|interpro:IPR000330(SNF2-related)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR014905(HIRAN)|interpro:IPR017907|interpro:IPR027417|interpro:IPR038718|mint:Q14527|rcsb pdb:2MZN|rcsb pdb:4HRE|rcsb pdb:4HRH|rcsb pdb:4S0N|rcsb pdb:4XZF|rcsb pdb:4XZG|rcsb pdb:5BNH|rcsb pdb:5K5F|rcsb pdb:6KCS|reactome:R-HSA-8866654	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:ozxGwYPSrDJ+Fg3F64VfE0Bc0wM9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:O95271	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-1105254|uniprotkb:O95272|uniprotkb:Q4G0F2|intact:EBI-28985643|ensembl:ENSP00000311579	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:tnks1_human(display_long)|uniprotkb:TNKS(gene name)|psi-mi:TNKS(display_short)|uniprotkb:PARP5A(gene name synonym)|uniprotkb:PARPL(gene name synonym)|uniprotkb:TIN1(gene name synonym)|uniprotkb:TINF1(gene name synonym)|uniprotkb:TNKS1(gene name synonym)|uniprotkb:Tankyrase I(gene name synonym)|uniprotkb:TNKS-1(gene name synonym)|uniprotkb:TRF1-interacting ankyrin-related ADP-ribose polymerase(gene name synonym)|uniprotkb:Poly [ADP-ribose] polymerase 5A(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 5(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase tankyrase-1(gene name synonym)|uniprotkb:Tankyrase-1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_003738.2|rcsb pdb:5JHQ|rcsb pdb:5JTI|rcsb pdb:5JU5|rcsb pdb:5KNI|rcsb pdb:6QXU|rcsb pdb:6URQ|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5545619|reactome:R-HSA-5689880|reactome:R-HSA-8948751|rcsb pdb:5GP7|ensembl:ENSP00000311579|ensembl:ENSG00000173273(gene)|ensembl:ENST00000310430(transcript)|go:"GO:0000139"(Golgi membrane)|go:"GO:0000209"(protein polyubiquitination)|go:"GO:0000242"(pericentriolar material)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005643"(nuclear pore)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005794"(Golgi apparatus)|go:"GO:0005829"(cytosol)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0007052"(mitotic spindle organization)|go:"GO:0008270"(zinc ion binding)|go:"GO:0015031"(protein transport)|go:"GO:0016604"(nuclear body)|go:"GO:0018105"(peptidyl-serine phosphorylation)|go:"GO:0018107"(peptidyl-threonine phosphorylation)|go:"GO:0031670"(cellular response to nutrient)|go:"GO:0031965"(nuclear membrane)|go:"GO:0032210"(regulation of telomere maintenance via telomerase)|go:"GO:0032212"(positive regulation of telomere maintenance via telomerase)|go:"GO:0042393"(histone binding)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0051028"(mRNA transport)|go:"GO:0051225"(spindle assembly)|go:"GO:0051301"(cell division)|go:"GO:0051973"(positive regulation of telomerase activity)|go:"GO:0070198"(protein localization to chromosome, telomeric region)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|go:"GO:0097431"(mitotic spindle pole)|go:"GO:1904355"(positive regulation of telomere capping)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1904743"(negative regulation of telomeric DNA binding)|go:"GO:1904908"(negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric)|go:"GO:1990404"(protein ADP-ribosylase activity)|interpro:IPR001660(Sterile alpha motif SAM)|interpro:IPR002110(Ankyrin)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR013761(Sterile alpha motif-type)|interpro:IPR020683|interpro:IPR028731|interpro:IPR036770|mint:O95271|rcsb pdb:2RF5|rcsb pdb:3UDD|rcsb pdb:3UH2|rcsb pdb:3UH4|rcsb pdb:4DVI|rcsb pdb:4I9I|go:"GO:0016055"(Wnt signaling pathway)|rcsb pdb:4K4F|rcsb pdb:4KRS|rcsb pdb:4LI6|rcsb pdb:4LI7|rcsb pdb:4LI8|rcsb pdb:4MSG|rcsb pdb:4MSK|rcsb pdb:4MT9|rcsb pdb:4N3R|rcsb pdb:4N4V|rcsb pdb:4OA7|rcsb pdb:4TOR|rcsb pdb:4TOS|rcsb pdb:4U6A|rcsb pdb:4UUH|rcsb pdb:4UW1|rcsb pdb:4K4E|rcsb pdb:4W5S|rcsb pdb:4W6E|rcsb pdb:5EBT|rcsb pdb:5ECE|rcsb pdb:5ETY|dip:DIP-36652N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:0WKEfg5OMAISQutoJb2w+hBfmOU9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P09874	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-355676|uniprotkb:Q8IUZ9|uniprotkb:B1ANJ4|ensembl:ENSP00000355759	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:parp1_human(display_long)|uniprotkb:PARP1(gene name)|psi-mi:PARP1(display_short)|uniprotkb:ADPRT(gene name synonym)|uniprotkb:PPOL(gene name synonym)|uniprotkb:"NAD(+) ADP-ribosyltransferase 1"(gene name synonym)|uniprotkb:Poly[ADP-ribose] synthase 1(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 1(gene name synonym)|uniprotkb:DNA ADP-ribosyltransferase PARP1(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase PARP1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001609.2|rcsb pdb:7AAC|rcsb pdb:7AAD|rcsb pdb:6NRJ|rcsb pdb:6NTU|rcsb pdb:7CMW|rcsb pdb:6VKK|rcsb pdb:7KK2|rcsb pdb:7KK3|rcsb pdb:7KK4|rcsb pdb:7KK5|rcsb pdb:7KK6|reactome:R-HSA-110362|reactome:R-HSA-192814|reactome:R-HSA-2173795|reactome:R-HSA-3108214|reactome:R-HSA-5685939|reactome:R-HSA-5696394|reactome:R-HSA-5696395|reactome:R-HSA-5696400|rcsb pdb:6VKO|rcsb pdb:6VKQ|rcsb pdb:6XVW|rcsb pdb:7AAA|rcsb pdb:7AAB|ensembl:ENSG00000143799(gene)|ensembl:ENST00000366794(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005635"(nuclear envelope)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005667"(transcription regulator complex)|go:"GO:0005730"(nucleolus)|go:"GO:0005739"(mitochondrion)|go:"GO:0006281"(DNA repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0006915"(apoptotic process)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007005"(mitochondrion organization)|go:"GO:0007179"(transforming growth factor beta receptor signaling pathway)|go:"GO:0008134"(transcription factor binding)|go:"GO:0010332"(response to gamma radiation)|go:"GO:0010613"(positive regulation of cardiac muscle hypertrophy)|go:"GO:0010990"(regulation of SMAD protein complex assembly)|go:"GO:0016020"(membrane)|go:"GO:0016540"(protein autoprocessing)|go:"GO:0016604"(nuclear body)|go:"GO:0018312"(peptidyl-serine ADP-ribosylation)|go:"GO:0018424"(peptidyl-glutamic acid poly-ADP-ribosylation)|go:"GO:0019899"(enzyme binding)|go:"GO:0019901"(protein kinase binding)|go:"GO:0023019"(signal transduction involved in regulation of gene expression)|go:"GO:0030225"(macrophage differentiation)|go:"GO:0030331"(estrogen receptor binding)|go:"GO:0030592"(DNA ADP-ribosylation)|go:"GO:0032042"(mitochondrial DNA metabolic process)|go:"GO:0032869"(cellular response to insulin stimulus)|go:"GO:0032991"(protein-containing complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0035861"(site of double-strand break)|go:"GO:0036211"(protein modification process)|go:"GO:0042769"(obsolete DNA damage response, detection of DNA damage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042826"(histone deacetylase binding)|go:"GO:0043504"(mitochondrial DNA repair)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0047485"(protein N-terminus binding)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:0051287"(NAD binding)|go:"GO:0051901"(positive regulation of mitochondrial depolarization)|go:"GO:0060391"(positive regulation of SMAD protein signal transduction)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0033148"(positive regulation of intracellular estrogen receptor signaling pathway)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0034599"(cellular response to oxidative stress)|go:"GO:0070412"(R-SMAD binding)|go:"GO:0034644"(cellular response to UV)|go:"GO:0071294"(cellular response to zinc ion)|go:"GO:0090734"(site of DNA damage)|go:"GO:0140294"(NAD DNA ADP-ribosyltransferase activity)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1901216"(positive regulation of neuron death)|go:"GO:1903376"(regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway)|go:"GO:1903518"(positive regulation of single strand break repair)|go:"GO:1904044"(response to aldosterone)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1904646"(cellular response to amyloid-beta)|go:"GO:1904762"(positive regulation of myofibroblast differentiation)|go:"GO:1905168"(positive regulation of double-strand break repair via homologous recombination)|go:"GO:1990404"(protein ADP-ribosylase activity)|go:"GO:1990966"(ATP generation from poly-ADP-D-ribose)|go:"GO:2000679"(positive regulation of transcription regulatory region DNA binding)|go:"GO:2001170"(negative regulation of ATP biosynthetic process)|interpro:IPR001357(BRCT)|interpro:IPR001510(Zinc finger, PARP-type)|interpro:IPR004102("Poly(ADP-ribose) polymerase, regulatory region")|interpro:IPR008288(NAD+ ADP-ribosyltransferase)|interpro:IPR008893(WGR)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR012982(PADR1)|interpro:IPR036420|interpro:IPR036616|interpro:IPR036930|interpro:IPR036957|interpro:IPR038650|mint:P09874|rcsb pdb:1UK0|rcsb pdb:1UK1|rcsb pdb:1WOK|rcsb pdb:2COK|rcsb pdb:2CR9|rcsb pdb:2CS2|rcsb pdb:2DMJ|rcsb pdb:2JVN|go:"GO:1903827"|rcsb pdb:2L30|rcsb pdb:2N8A|rcsb pdb:2RCW|rcsb pdb:2RD6|rcsb pdb:2RIQ|rcsb pdb:2L31|rcsb pdb:3GJW|rcsb pdb:3GN7|rcsb pdb:3L3L|rcsb pdb:3L3M|rcsb pdb:3OD8|rcsb pdb:3ODA|rcsb pdb:3ODC|rcsb pdb:3ODE|rcsb pdb:4AV1|rcsb pdb:4DQY|rcsb pdb:4GV7|rcsb pdb:4HHY|rcsb pdb:4HHZ|rcsb pdb:4L6S|rcsb pdb:4OPX|rcsb pdb:4OQA|rcsb pdb:4OQB|rcsb pdb:4PJT|rcsb pdb:4R5W|rcsb pdb:4R6E|rcsb pdb:4RV6|rcsb pdb:4UND|rcsb pdb:4UXB|rcsb pdb:4XHU|rcsb pdb:5A00|rcsb pdb:5DS3|rcsb pdb:5HA9|rcsb pdb:5KPN|rcsb pdb:5KPO|rcsb pdb:5KPP|rcsb pdb:5KPQ|rcsb pdb:5WRQ|rcsb pdb:5WRY|rcsb pdb:5WRZ|rcsb pdb:5WS0|rcsb pdb:5WS1|rcsb pdb:5WTC|rcsb pdb:4ZZZ|rcsb pdb:5XSR|rcsb pdb:5XST|rcsb pdb:5XSU|rcsb pdb:6BHV|rcsb pdb:6GHK|rcsb pdb:6M3I|rcsb pdb:6NRF|rcsb pdb:6NRG|rcsb pdb:6NRH|rcsb pdb:6NRI|dip:DIP-38N	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:VC+4HLilGJuoiTbk4/fSeRw9+iY9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9NTX7	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117202|imex:IM-27448-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	-	-	-	figure legend:fig. 5c 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rigid:4vlQiXZnohGJiSu4VpYTHG9VoV4	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q92878	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-495494|uniprotkb:O43254|uniprotkb:Q6GMT7|uniprotkb:Q6P5X3|uniprotkb:Q9UP86|uniprotkb:B9EGF5|ensembl:ENSP00000368100	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rad50_human(display_long)|uniprotkb:RAD50(gene name)|psi-mi:RAD50(display_short)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_005723.2|dip:DIP-33606N|ensembl:ENSG00000113522(gene)|ensembl:ENST00000378823(transcript)|go:"GO:0000019"(regulation of mitotic recombination)|go:"GO:0000722"(telomere maintenance via recombination)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0000794"(condensed nuclear chromosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003691"(double-stranded telomeric DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006281"(DNA repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007004"(telomere maintenance via telomerase)|go:"GO:0007131"(reciprocal meiotic recombination)|go:"GO:0016020"(membrane)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0030870"(Mre11 complex)|go:"GO:0031860"(telomeric 3' overhang formation)|go:"GO:0031954"(positive regulation of protein autophosphorylation)|go:"GO:0032206"(positive regulation of telomere maintenance)|go:"GO:0032508"(DNA duplex unwinding)|go:"GO:0033674"(positive regulation of kinase activity)|go:"GO:0035861"(site of double-strand break)|go:"GO:0042802"(identical protein binding)|go:"GO:0043047"(single-stranded telomeric DNA binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051880"(G-quadruplex DNA binding)|go:"GO:0070192"(chromosome organization involved in meiotic cell cycle)|go:"GO:0090305"(nucleic acid phosphodiester bond hydrolysis)|go:"GO:1904354"(negative regulation of telomere capping)|interpro:IPR013134(Zinc hook, Rad50)|interpro:IPR027417|interpro:IPR038729|mint:Q92878|rcsb pdb:5GOX|reactome:R-HSA-2559586|reactome:R-HSA-5685938|reactome:R-HSA-5685939|reactome:R-HSA-5685942|reactome:R-HSA-5693548|reactome:R-HSA-5693554|reactome:R-HSA-5693565|reactome:R-HSA-5693568|reactome:R-HSA-5693571|reactome:R-HSA-5693579|reactome:R-HSA-5693607|reactome:R-HSA-5693616|reactome:R-HSA-6804756|reactome:R-HSA-69473|reactome:R-HSA-912446|interpro:IPR004584(Recombination/repair protein Rad50)	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:yZsT5GcpA9HeFMoK4Jb1HYhrdKQ9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P35251	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-476616|uniprotkb:Q5XKF5|uniprotkb:Q6PKU0|uniprotkb:Q86V41|uniprotkb:Q86V46|ensembl:ENSP00000371321|uniprotkb:A8K6E7	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rfc1_human(display_long)|uniprotkb:Activator 1 subunit 1(gene name synonym)|uniprotkb:Replication factor C large subunit(gene name synonym)|uniprotkb:Replication factor C 140 kDa subunit(gene name synonym)|uniprotkb:Activator 1 140 kDa subunit(gene name synonym)|uniprotkb:Activator 1 large subunit(gene name synonym)|uniprotkb:DNA-binding protein PO-GA(gene name synonym)|uniprotkb:RFC1(gene name)|psi-mi:RFC1(display_short)|uniprotkb:RFC140(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001191676.1|refseq:NP_002904.3|ensembl:ENSG00000035928(gene)|ensembl:ENST00000381897(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0003677"(DNA binding)|go:"GO:0003689"(DNA clamp loader activity)|go:"GO:0003690"(double-stranded DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005663"(DNA replication factor C complex)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0007004"(telomere maintenance via telomerase)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0031391"(Elg1 RFC-like complex)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|go:"GO:0061860"(DNA clamp unloader activity)|go:"GO:0070062"(extracellular exosome)|go:"GO:0090618"(DNA clamp unloading)|interpro:IPR001357(BRCT)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR008921(DNA polymerase III clamp loader subunit, C-terminal)|interpro:IPR012178(DNA replication factor C, large subunit)|interpro:IPR013725(DNA replication factor RFC1, C-terminal)|interpro:IPR027417|interpro:IPR036420|mint:P35251|rcsb pdb:2EBU|rcsb pdb:2K6G|rcsb pdb:2K7F|rcsb pdb:6VVO|reactome:R-HSA-110312|reactome:R-HSA-110314|reactome:R-HSA-110320|reactome:R-HSA-174411|reactome:R-HSA-5651801|reactome:R-HSA-5655862|reactome:R-HSA-5656121|reactome:R-HSA-5656169|reactome:R-HSA-5685942|reactome:R-HSA-5696397|reactome:R-HSA-5696400|reactome:R-HSA-6782135|reactome:R-HSA-6782210|reactome:R-HSA-69091	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:m4MUwhmpn0xCElyHLAw4FlIVyBs9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P15927	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-621404|ensembl:ENSP00000363021|uniprotkb:Q52II0|uniprotkb:Q5TEI9|uniprotkb:Q5TEJ5	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rfa2_human(display_long)|uniprotkb:RPA34(gene name synonym)|uniprotkb:Replication protein A 34 kDa subunit(gene name synonym)|uniprotkb:Replication factor A protein 2(gene name synonym)|uniprotkb:RPA2(gene name)|psi-mi:RPA2(display_short)|uniprotkb:REPA2(gene name synonym)|uniprotkb:RPA32(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	rcsb pdb:1L1O|rcsb pdb:1QUQ|rcsb pdb:1Z1D|rcsb pdb:2PI2|rcsb pdb:2PQA|rcsb pdb:2Z6K|rcsb pdb:3KDF|rcsb pdb:4MQV|rcsb pdb:4OU0|reactome:R-HSA-110312|reactome:R-HSA-110314|reactome:R-HSA-110320|reactome:R-HSA-174437|reactome:R-HSA-176187|reactome:R-HSA-3371453|reactome:R-HSA-3371511|reactome:R-HSA-5358565|reactome:R-HSA-5358606|reactome:R-HSA-5651801|reactome:R-HSA-5655862|reactome:R-HSA-5656121|reactome:R-HSA-5656169|reactome:R-HSA-5685938|reactome:R-HSA-5685942|reactome:R-HSA-5693607|reactome:R-HSA-5693616|reactome:R-HSA-5696395|reactome:R-HSA-5696397|reactome:R-HSA-5696400|reactome:R-HSA-6782135|reactome:R-HSA-6782210|reactome:R-HSA-6783310|reactome:R-HSA-6804756|reactome:R-HSA-68962|reactome:R-HSA-69166|reactome:R-HSA-69473|reactome:R-HSA-912446|rcsb pdb:1DPU|ensembl:ENSG00000117748(gene)|ensembl:ENST00000373912(transcript)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000724"(double-strand break repair via homologous recombination)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0000785"(chromatin)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005662"(DNA replication factor A complex)|go:"GO:0006260"(DNA replication)|go:"GO:0006284"(base-excision repair)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006298"(mismatch repair)|go:"GO:0010569"(regulation of double-strand break repair via homologous recombination)|go:"GO:0016604"(nuclear body)|go:"GO:0016605"(PML body)|go:"GO:0019899"(enzyme binding)|go:"GO:0019903"(protein phosphatase binding)|go:"GO:0031571"(mitotic G1 DNA damage checkpoint signaling)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0034502"(protein localization to chromosome)|go:"GO:0047485"(protein N-terminus binding)|go:"GO:0098505"(G-rich strand telomeric DNA binding)|go:"GO:2000001"(regulation of DNA damage checkpoint)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014646(Replication protein A, subunit RPA32)|interpro:IPR014892(Replication protein A C terminal)|interpro:IPR036388|interpro:IPR036390|interpro:IPR040260|mint:P15927|refseq:NP_001273005.1|refseq:NP_002937.1|refseq:NP_001284487.1|dip:DIP-24187N	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:+Ute8Lq5hnN0sLAQNWZb0cAbcTI9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P27694	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-621389|ensembl:ENSP00000254719|uniprotkb:Q59ES9|uniprotkb:A8K0Y9	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rfa1_human(display_long)|uniprotkb:Replication factor A protein 1(gene name synonym)|uniprotkb:Single-stranded DNA-binding protein(gene name synonym)|uniprotkb:RPA1(gene name)|psi-mi:RPA1(display_short)|uniprotkb:REPA1(gene name synonym)|uniprotkb:RPA70(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	ensembl:ENSG00000132383(gene)|ensembl:ENST00000254719(transcript)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000724"(double-strand break repair via homologous recombination)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005662"(DNA replication factor A complex)|go:"GO:0006260"(DNA replication)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0006284"(base-excision repair)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006298"(mismatch repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007004"(telomere maintenance via telomerase)|go:"GO:0016605"(PML body)|go:"GO:0034502"(protein localization to chromosome)|go:"GO:0043047"(single-stranded telomeric DNA binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051321"(meiotic cell cycle)|go:"GO:0090734"(site of DNA damage)|go:"GO:0098505"(G-rich strand telomeric DNA binding)|interpro:IPR004365(Nucleic acid binding, OB-fold, tRNA/helicase-type)|interpro:IPR004591(Replication factor-a protein 1 Rpa1)|interpro:IPR007199(Replication factor-A protein 1, N-terminal)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013955(Replication factor-A, C-terminal)|interpro:IPR031657|go:"GO:0006268"(DNA unwinding involved in DNA replication)|mint:P27694|rcsb pdb:1EWI|rcsb pdb:1FGU|rcsb pdb:1JMC|rcsb pdb:1L1O|rcsb pdb:2B29|rcsb pdb:2B3G|rcsb pdb:4IJH|rcsb pdb:4IJL|rcsb pdb:4IPC|rcsb pdb:4IPD|rcsb pdb:4IPG|rcsb pdb:4IPH|rcsb pdb:4LUO|rcsb pdb:4LUV|rcsb pdb:4LUZ|rcsb pdb:4LW1|rcsb pdb:4LWC|rcsb pdb:4NB3|rcsb pdb:4O0A|rcsb pdb:4R4C|rcsb pdb:4R4I|rcsb pdb:4R4O|rcsb pdb:4R4Q|rcsb pdb:4R4T|rcsb pdb:5E7N|rcsb pdb:5EAY|rcsb pdb:5N85|rcsb pdb:5N8A|reactome:R-HSA-110312|reactome:R-HSA-110314|reactome:R-HSA-110320|reactome:R-HSA-174437|reactome:R-HSA-176187|reactome:R-HSA-3371453|reactome:R-HSA-3371511|reactome:R-HSA-5358565|reactome:R-HSA-5358606|reactome:R-HSA-5651801|reactome:R-HSA-5655862|reactome:R-HSA-5656121|reactome:R-HSA-5656169|reactome:R-HSA-5685938|reactome:R-HSA-5685942|reactome:R-HSA-5693607|reactome:R-HSA-5693616|reactome:R-HSA-5696395|reactome:R-HSA-5696397|reactome:R-HSA-5696400|reactome:R-HSA-6782135|reactome:R-HSA-6782210|reactome:R-HSA-6783310|reactome:R-HSA-6804756|reactome:R-HSA-68962|reactome:R-HSA-69166|reactome:R-HSA-69473|reactome:R-HSA-912446|reactome:R-HSA-3108214|refseq:NP_002936.1|dip:DIP-24189N	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:DRZpMUlGyS0Qa5XFEtx71k0iPig9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9H6R7	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-346906|uniprotkb:D6W532|uniprotkb:Q8IYK0|uniprotkb:Q9HBP5|ensembl:ENSP00000295148	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:wdcp_human(display_long)|uniprotkb:WDCP(gene name)|psi-mi:WDCP(display_short)|uniprotkb:C2orf44(gene name synonym)|uniprotkb:PP384(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001135791.1|refseq:NP_079479.1|ensembl:ENSG00000163026(gene)|ensembl:ENST00000295148(transcript)|go:"GO:0019900"(kinase binding)|go:"GO:0051259"(protein complex oligomerization)|interpro:IPR028041|mint:Q9H6R7	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:qT8Zfifj+1U5HvWjtXjKTiVj1OA9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q01082	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-351561|intact:EBI-1642531|uniprotkb:O60837|uniprotkb:Q16057|uniprotkb:Q53R99|uniprotkb:Q59ER3|uniprotkb:Q8IX99|uniprotkb:B2RP63|ensembl:ENSP00000349259	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:sptb2_human(display_long)|uniprotkb:SPTBN1(gene name)|psi-mi:SPTBN1(display_short)|uniprotkb:SPTB2(gene name synonym)|uniprotkb:Spectrin, non-erythroid beta chain 1(gene name synonym)|uniprotkb:Beta-II spectrin(gene name synonym)|uniprotkb:Fodrin beta chain(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_003119.2|refseq:NP_842565.2|ensembl:ENSG00000115306(gene)|ensembl:ENST00000356805(transcript)|go:"GO:0000281"(mitotic cytokinesis)|go:"GO:0003723"(RNA binding)|go:"GO:0003779"(actin binding)|go:"GO:0005200"(structural constituent of cytoskeleton)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005543"(phospholipid binding)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0007009"(plasma membrane organization)|go:"GO:0007182"(common-partner SMAD protein phosphorylation)|go:"GO:0008091"(spectrin)|go:"GO:0014069"(postsynaptic density)|go:"GO:0014731"(spectrin-associated cytoskeleton)|go:"GO:0030506"(ankyrin binding)|go:"GO:0030673"(axolemma)|go:"GO:0031430"(M band)|go:"GO:0032437"(cuticular plate)|go:"GO:0032743"(positive regulation of interleukin-2 production)|go:"GO:0043001"(Golgi to plasma membrane protein transport)|go:"GO:0044877"(protein-containing complex binding)|go:"GO:0045296"(cadherin binding)|go:"GO:0051020"(GTPase binding)|go:"GO:0051693"(actin filament capping)|go:"GO:0060390"(regulation of SMAD protein signal transduction)|go:"GO:0070062"(extracellular exosome)|go:"GO:0071709"(membrane assembly)|go:"GO:0072659"(protein localization to plasma membrane)|go:"GO:0098978"(glutamatergic synapse)|go:"GO:1903076"(regulation of protein localization to plasma membrane)|go:"GO:1903078"(positive regulation of protein localization to plasma membrane)|interpro:IPR001589(Actinin-type, actin-binding, conserved site)|interpro:IPR001605(Spectrin/pleckstrin-like)|interpro:IPR001715(Calponin-like actin-binding)|interpro:IPR001849(Pleckstrin-like)|interpro:IPR002017(Spectrin repeat)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR016343(Spectrin, beta subunit)|interpro:IPR018159|interpro:IPR036872|interpro:IPR041681|mint:Q01082|rcsb pdb:1AA2|rcsb pdb:1BKR|rcsb pdb:3EDV|reactome:R-HSA-375165|reactome:R-HSA-445095|reactome:R-HSA-5673001|reactome:R-HSA-6807878|reactome:R-HSA-9013420|reactome:R-HSA-9013424|reactome:R-HSA-9662360|reactome:R-HSA-9662361|reactome:R-HSA-9703465|reactome:R-HSA-373753|refseq:XP_005264574.1|refseq:XP_006712150.1|refseq:XP_016860268.1|refseq:XP_016860269.1|refseq:XP_016860270.1|dip:DIP-33182N	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:rQJxsoEirg87umLjsEwHcQ0/blQ9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q5SVZ6	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-2555834|uniprotkb:Q7Z3Q4|ensembl:ENSP00000352920|ensembl:ENSP00000362427|ensembl:ENSP00000482579|ensembl:ENSP00000496876|uniprotkb:D3DPR7	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:zmym1_human(display_long)|uniprotkb:ZMYM1(gene name)|psi-mi:ZMYM1(display_short)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_079048.3|ensembl:ENSG00000197056(gene)|ensembl:ENST00000359858(transcript)|ensembl:ENST00000373330(transcript)|ensembl:ENST00000611874(transcript)|ensembl:ENST00000650449(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0008270"(zinc ion binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR008906(HAT dimerisation)|interpro:IPR010507(Zinc finger, MYM-type)|interpro:IPR011017(TRASH)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR025398|mint:Q5SVZ6|refseq:NP_001306884.1|ensembl:ENSP00000352920|ensembl:ENSP00000362427|ensembl:ENSP00000482579|ensembl:ENSP00000496876|refseq:NP_001276017.1|refseq:NP_001276018.1|refseq:NP_001276019.1	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:Mi/JhPhavQr3W2r/4xHAGfYjMWE9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P39880	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-719064|uniprotkb:Q75LE5|uniprotkb:Q75MT2|uniprotkb:Q75MT3|uniprotkb:Q86UJ7|uniprotkb:Q6NYH4|uniprotkb:Q9UEV5|uniprotkb:B3KV79|uniprotkb:J3KQV9|intact:EBI-28989061|ensembl:ENSP00000292535|ensembl:ENSP00000450125	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:cux1_human(display_long)|uniprotkb:CUTL1(gene name synonym)|uniprotkb:CCAAT displacement protein(gene name synonym)|uniprotkb:CUX1(gene name)|psi-mi:CUX1(display_short)|uniprotkb:Homeobox protein cux-1(gene name synonym)|uniprotkb:CDP/Cux p200(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001189472.1|refseq:NP_853530.2|refseq:NP_001189474.1|ensembl:ENSP00000292535|ensembl:ENST00000360264|ensembl:ENSP00000353401|ensembl:ENST00000425244|ensembl:ENSP00000409745|ensembl:ENSP00000450125|ensembl:ENST00000549414|ensembl:ENSP00000446630|ensembl:ENST00000550008|ensembl:ENSP00000447373|ensembl:ENST00000556210|ensembl:ENSP00000451558|refseq:NP_001189473.1|refseq:NP_852477.1|ensembl:ENSG00000257923(gene)|ensembl:ENST00000292535(transcript)|ensembl:ENST00000546411(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0000139"(Golgi membrane)|go:"GO:0000301"(retrograde transport, vesicle recycling within Golgi)|go:"GO:0000785"(chromatin)|go:"GO:0000977"(RNA polymerase II transcription regulatory region sequence-specific DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005794"(Golgi apparatus)|go:"GO:0005829"(cytosol)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0007275"(multicellular organism development)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0050775"(positive regulation of dendrite morphogenesis)|go:"GO:1990837"(sequence-specific double-stranded DNA binding)|interpro:IPR001356(Homeobox)|interpro:IPR003350(Homeodomain protein CUT)|interpro:IPR009057(Homeodomain-like)|interpro:IPR010982(Lambda repressor-like, DNA-binding)|interpro:IPR017970|mint:P39880|reactome:R-HSA-1839117|reactome:R-HSA-5655302|go:"GO:0000981"(DNA-binding transcription factor activity, RNA polymerase II-specific)	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:nzlzLWJ1xI4b6kEPnLVBKwbtwLs9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P41252	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-355303|uniprotkb:Q5TCD0|uniprotkb:Q9H588|uniprotkb:A8KAE9|uniprotkb:Q7Z3T4|ensembl:ENSP00000364794|ensembl:ENSP00000406448|ensembl:ENSP00000507144	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:syic_human(display_long)|uniprotkb:IARS1(gene name)|psi-mi:IARS1(display_short)|uniprotkb:IARS(gene name synonym)|uniprotkb:Isoleucyl-tRNA synthetase(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_002152.2|refseq:NP_038203.2|ensembl:ENSG00000196305(gene)|ensembl:ENST00000375643(transcript)|ensembl:ENST00000443024(transcript)|ensembl:ENST00000683565(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0001649"(osteoblast differentiation)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004822"(isoleucine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006418"(tRNA aminoacylation for protein translation)|go:"GO:0006428"(isoleucyl-tRNA aminoacylation)|go:"GO:0016020"(membrane)|go:"GO:0017101"(aminoacyl-tRNA synthetase multienzyme complex)|go:"GO:0051020"(GTPase binding)|go:"GO:0070062"(extracellular exosome)|interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR002300(Aminoacyl-tRNA synthetase, class Ia)|interpro:IPR002301(Isoleucyl-tRNA synthetase, class Ia)|interpro:IPR009008(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR013155(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR023586|interpro:IPR033709|mint:P41252|reactome:R-HSA-2408522|reactome:R-HSA-379716	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:maAJX/O1Ryxr5NVFQEWvXNgHXyY9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q12923	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-355227|uniprotkb:Q9UDA8|uniprotkb:Q15159|uniprotkb:Q15263|uniprotkb:Q15264|uniprotkb:Q15265|uniprotkb:Q15674|uniprotkb:Q16826|uniprotkb:Q8IWH7|uniprotkb:Q9NYN9|uniprotkb:B2RTR0|ensembl:ENSP00000407249	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:ptn13_human(display_long)|uniprotkb:PTPN13(gene name)|psi-mi:PTPN13(display_short)|uniprotkb:PNP1(gene name synonym)|uniprotkb:PTP1E(gene name synonym)|uniprotkb:PTPL1(gene name synonym)|uniprotkb:Protein-tyrosine phosphatase 1E(gene name synonym)|uniprotkb:PTP-BAS(gene name synonym)|uniprotkb:Protein-tyrosine phosphatase PTPL1(gene name synonym)|uniprotkb:Fas-associated protein-tyrosine phosphatase 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_006255.1|refseq:NP_542414.1|refseq:NP_542415.1|refseq:NP_542416.1|ensembl:ENST00000316707|ensembl:ENSP00000322675|ensembl:ENSP00000407249|ensembl:ENST00000427191|ensembl:ENSP00000408368|ensembl:ENST00000436978|ensembl:ENSP00000394794|ensembl:ENST00000511467|ensembl:ENSP00000426626|dip:DIP-40449N|ensembl:ENSG00000163629(gene)|ensembl:ENST00000411767(transcript)|go:"GO:0001650"(fibrillar center)|go:"GO:0004725"(protein tyrosine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005856"(cytoskeleton)|go:"GO:0005886"(plasma membrane)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0014066"(regulation of phosphatidylinositol 3-kinase signaling)|go:"GO:0030027"(lamellipodium)|go:"GO:0035335"(peptidyl-tyrosine dephosphorylation)|go:"GO:0036312"(phosphatidylinositol 3-kinase regulatory subunit binding)|go:"GO:0043005"(neuron projection)|go:"GO:0044297"(cell body)|go:"GO:0070062"(extracellular exosome)|interpro:IPR000242(Protein-tyrosine phosphatase, receptor/non-receptor type)|interpro:IPR000299(Band 4.1, N-terminal)|interpro:IPR000387(Protein-tyrosine phosphatase)|interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR003595(Protein-tyrosine phosphatase, catalytic)|interpro:IPR011019(KIND)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR012153(Protein-tyrosine phosphatase, non-receptor type-13)|interpro:IPR014352(FERM/acyl-CoA-binding protein, 3-helical bundle)|interpro:IPR018979|interpro:IPR018980|interpro:IPR019748|interpro:IPR019749|interpro:IPR029021|interpro:IPR029071|interpro:IPR035963|interpro:IPR036034|mint:Q12923|rcsb pdb:1D5G|rcsb pdb:1Q7X|go:"GO:0001933"(negative regulation of protein phosphorylation)|rcsb pdb:1WCH|rcsb pdb:2M0Z|rcsb pdb:2M10|rcsb pdb:3LNX|rcsb pdb:3LNY|rcsb pdb:3PDZ|rcsb pdb:5GLJ|reactome:R-HSA-1660499|reactome:R-HSA-9008059|reactome:R-HSA-9696264|reactome:R-HSA-9696270|reactome:R-HSA-9696273	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:PU9d6x+mLnjomT1yfPSVBg0i2Bk9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q5T2T1	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-2514004|ensembl:ENSP00000337907|ensembl:ENSP00000364871|ensembl:ENSP00000364884|ensembl:ENSP00000507917|uniprotkb:B2RCC9|uniprotkb:Q5T2T0|uniprotkb:B5MDZ3|uniprotkb:Q8IY28|uniprotkb:B4DWL9|uniprotkb:D3DRW3	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:mpp7_human(display_long)|uniprotkb:MPP7(gene name)|psi-mi:MPP7(display_short)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	ensembl:ENSG00000150054(gene)|ensembl:ENST00000337532(transcript)|ensembl:ENST00000375719(transcript)|ensembl:ENST00000375732(transcript)|ensembl:ENST00000683449(transcript)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005912"(adherens junction)|go:"GO:0005923"(bicellular tight junction)|go:"GO:0005938"(cell cortex)|go:"GO:0016328"(lateral plasma membrane)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0030010"(establishment of cell polarity)|go:"GO:0030054"(cell junction)|go:"GO:0031334"(positive regulation of protein-containing complex assembly)|go:"GO:0035591"(signaling adaptor activity)|go:"GO:0045296"(cadherin binding)|go:"GO:0060090"(molecular adaptor activity)|go:"GO:0070830"(bicellular tight junction assembly)|go:"GO:0071896"(protein localization to adherens junction)|interpro:IPR001452(Src homology-3)|interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR004172(L27)|interpro:IPR008144(Guanylate kinase)|interpro:IPR008145(Guanylate kinase/L-type calcium channel region)|interpro:IPR014775(L27, C-terminal)|interpro:IPR020590|interpro:IPR027417|interpro:IPR035599|interpro:IPR036028|interpro:IPR036034|interpro:IPR036892|mint:Q5T2T1|rcsb pdb:3LRA|rcsb pdb:3O46|reactome:R-HSA-9013149|reactome:R-HSA-9013404|reactome:R-HSA-9013406|reactome:R-HSA-9013408|go:"GO:0097025"(MPP7-DLG1-LIN7 complex)|reactome:R-HSA-9013409|reactome:R-HSA-9013423|refseq:XP_011517639.1|refseq:NP_001305099.1|refseq:NP_775767.2	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:QYVCkD5zsnTsCd7YsYsbQY8L7fU9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q08945	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-353771|uniprotkb:Q5BJG8|ensembl:ENSP00000278412	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:ssrp1_human(display_long)|uniprotkb:SSRP1(gene name)|psi-mi:SSRP1(display_short)|uniprotkb:FACT80(gene name synonym)|uniprotkb:Facilitates chromatin transcription complex subunit SSRP1(gene name synonym)|uniprotkb:Facilitates chromatin transcription complex 80 kDa subunit(gene name synonym)|uniprotkb:Chromatin-specific transcription elongation factor 80 kDa subunit(gene name synonym)|uniprotkb:Structure-specific recognition protein 1(gene name synonym)|uniprotkb:Recombination signal sequence recognition protein 1(gene name synonym)|uniprotkb:T160(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_003137.1|ensembl:ENSG00000149136(gene)|ensembl:ENST00000278412(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006260"(DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0031491"(nucleosome binding)|go:"GO:0035101"(FACT complex)|go:"GO:0042393"(histone binding)|reactome:R-HSA-167243|reactome:R-HSA-167246|reactome:R-HSA-167287|reactome:R-HSA-167290|reactome:R-HSA-674695|reactome:R-HSA-6796648|reactome:R-HSA-6804756|reactome:R-HSA-75955|go:"GO:1902275"(regulation of chromatin organization)|interpro:IPR000969(Structure-specific recognition protein)|interpro:IPR009071(High mobility group box, HMG)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR013719(Region of unknown function DUF1747, eukaryote)|interpro:IPR024954|interpro:IPR035417|interpro:IPR036910|interpro:IPR038167|mint:Q08945|rcsb pdb:4IFS|rcsb pdb:5UMR|rcsb pdb:5UMS|rcsb pdb:5VWE|rcsb pdb:6L1E|rcsb pdb:6L1R|rcsb pdb:6L34|rcsb pdb:6UPK|rcsb pdb:6UPL|reactome:R-HSA-112382|reactome:R-HSA-167152|reactome:R-HSA-167200|reactome:R-HSA-167238|dip:DIP-169N	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:WmdGVZadHdcS6Nk9SI41xKm+OrU9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q5TCQ9	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-310506|uniprotkb:Q5TCR0|uniprotkb:Q9H2V6|uniprotkb:Q5TCQ8|uniprotkb:Q9H5Y8|uniprotkb:Q9HBC4|intact:EBI-2512710|intact:EBI-991068|ensembl:ENSP00000304604|uniprotkb:Q9HCD8|uniprotkb:A0A024R0E9|uniprotkb:A0A024R0H3	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:magi3_human(display_long)|uniprotkb:MAGI3(gene name)|psi-mi:MAGI3(display_short)|uniprotkb:KIAA1634(gene name synonym)|uniprotkb:Membrane-associated guanylate kinase inverted 3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	ensembl:ENST00000307546(transcript)|go:"GO:0004385"(guanylate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005886"(plasma membrane)|go:"GO:0005911"(cell-cell junction)|go:"GO:0005923"(bicellular tight junction)|ensembl:ENSG00000081026(gene)|go:"GO:0006915"(apoptotic process)|go:"GO:0007165"(signal transduction)|go:"GO:0030054"(cell junction)|go:"GO:0035556"(intracellular signal transduction)|go:"GO:0046328"(regulation of JNK cascade)|go:"GO:0016020"(membrane)|go:"GO:0060090"(molecular adaptor activity)|interpro:IPR001202(WW/Rsp5/WWP)|interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR008144(Guanylate kinase)|interpro:IPR008145(Guanylate kinase/L-type calcium channel region)|interpro:IPR020590|interpro:IPR027417|interpro:IPR030035|interpro:IPR036020|interpro:IPR036034|mint:Q5TCQ9|rcsb pdb:3SOE|refseq:NP_001136254.1|refseq:NP_690864.2|refseq:XP_005270794.1	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:muK+zH3ww4Ve8aJ74iU2be8hRa09606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P18887	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-947466|uniprotkb:Q9HCB1|uniprotkb:Q6IBS4|ensembl:ENSP00000262887	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:xrcc1_human(display_long)|uniprotkb:XRCC1(gene name)|psi-mi:XRCC1(display_short)|uniprotkb:X-ray repair cross-complementing protein 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_006288.2|dip:DIP-39067N|ensembl:ENSG00000073050(gene)|ensembl:ENST00000262887(transcript)|go:"GO:0000012"(single strand break repair)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0000785"(chromatin)|go:"GO:0001666"(response to hypoxia)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006284"(base-excision repair)|go:"GO:0006303"(double-strand break repair via nonhomologous end joining)|go:"GO:0010033"(response to organic substance)|go:"GO:0010836"(negative regulation of protein ADP-ribosylation)|go:"GO:0019899"(enzyme binding)|go:"GO:0021587"(cerebellum morphogenesis)|go:"GO:0021766"(hippocampus development)|go:"GO:0032356"(oxidized DNA binding)|go:"GO:0033194"(response to hydroperoxide)|go:"GO:0042493"|go:"GO:0050882"(voluntary musculoskeletal movement)|go:"GO:0061819"(telomeric DNA-containing double minutes formation)|go:"GO:0070522"(ERCC4-ERCC1 complex)|go:"GO:1903518"(positive regulation of single strand break repair)|go:"GO:1904877"(positive regulation of DNA ligase activity)|go:"GO:1905765"(negative regulation of protection from non-homologous end joining at telomere)|go:"GO:1990414"(replication-born double-strand break repair via sister chromatid exchange)|go:"GO:1990599"(3' overhang single-stranded DNA endodeoxyribonuclease activity)|interpro:IPR001357(BRCT)|interpro:IPR002706(DNA-repair protein Xrcc1, N-terminal)|interpro:IPR008979(Galactose-binding like)|interpro:IPR036420|mint:P18887|rcsb pdb:1CDZ|rcsb pdb:1XNA|rcsb pdb:1XNT|rcsb pdb:2D8M|rcsb pdb:2W3O|rcsb pdb:3K75|rcsb pdb:3K77|rcsb pdb:3LQC|rcsb pdb:5E6Q|rcsb pdb:5W7X|rcsb pdb:5W7Y|reactome:R-HSA-110381|reactome:R-HSA-5649702|reactome:R-HSA-5685939|reactome:R-HSA-5696397|reactome:R-HSA-6782210	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:96hETrBzHYhHX9FC5dZpKnFcjDg9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9NZC9	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-5457961|uniprotkb:A6NEH0|uniprotkb:Q53R00|uniprotkb:Q96AY1|uniprotkb:Q9NXQ5|uniprotkb:Q9UFH3|uniprotkb:Q9UI93|ensembl:ENSP00000349823|ensembl:ENSP00000350940	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:smal1_human(display_long)|uniprotkb:SMARCAL1(gene name)|psi-mi:SMARCAL1(display_short)|uniprotkb:HARP(gene name synonym)|uniprotkb:HepA-related protein(gene name synonym)|uniprotkb:Sucrose nonfermenting protein 2-like 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001120679.1|refseq:NP_054859.2|refseq:XP_005246688.1|refseq:XP_005246689.1|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0016787"(hydrolase activity)|go:"GO:0031297"(replication fork processing)|go:"GO:0035861"(site of double-strand break)|go:"GO:0036310"(ATP-dependent DNA/DNA annealing activity)|go:"GO:0043596"(nuclear replication fork)|go:"GO:0048478"(replication fork protection)|go:"GO:0070615"|ensembl:ENSG00000138375(gene)|ensembl:ENST00000357276(transcript)|ensembl:ENST00000358207(transcript)|go:"GO:0004386"(helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006281"(DNA repair)|go:"GO:0006303"(double-strand break repair via nonhomologous end joining)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|interpro:IPR000330(SNF2-related)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR010003(HepA-related)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|interpro:IPR030101|interpro:IPR038718|mint:Q9NZC9|rcsb pdb:4MQV|go:"GO:0090656"(t-circle formation)	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:sUz7fctEmC8ajY7I9H474RGxhag9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P21333	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-350432|uniprotkb:Q8NF52|intact:EBI-1103234|ensembl:ENSP00000358866|uniprotkb:Q5HY53|uniprotkb:Q5HY55|uniprotkb:E9KL45	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:flna_human(display_long)|uniprotkb:FLNA(gene name)|psi-mi:FLNA(display_short)|uniprotkb:FLN(gene name synonym)|uniprotkb:FLN1(gene name synonym)|uniprotkb:Alpha-filamin(gene name synonym)|uniprotkb:Filamin-1(gene name synonym)|uniprotkb:Endothelial actin-binding protein(gene name synonym)|uniprotkb:Actin-binding protein 280(gene name synonym)|uniprotkb:Non-muscle filamin(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	go:"GO:0007195"(adenylate cyclase-inhibiting dopamine receptor signaling pathway)|go:"GO:1902396"(protein localization to bicellular tight junction)|refseq:NP_001104026.1|refseq:NP_001447.2|ensembl:ENSG00000196924(gene)|ensembl:ENST00000369850(transcript)|go:"GO:0001525"(angiogenesis)|go:"GO:0001664"(G protein-coupled receptor binding)|go:"GO:0001837"(epithelial to mesenchymal transition)|go:"GO:0001974"(blood vessel remodeling)|go:"GO:0003007"(heart morphogenesis)|go:"GO:0003723"(RNA binding)|go:"GO:0005080"(protein kinase C binding)|go:"GO:0005576"(extracellular region)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005802"(trans-Golgi network)|go:"GO:0005829"(cytosol)|go:"GO:0005884"(actin filament)|go:"GO:0005886"(plasma membrane)|go:"GO:0005903"(brush border)|go:"GO:0005911"(cell-cell junction)|go:"GO:0005925"(focal adhesion)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0048680"(positive regulation of axon regeneration)|go:"GO:0050808"(synapse organization)|go:"GO:0050821"(protein stabilization)|go:"GO:0051015"(actin filament binding)|go:"GO:0051020"(GTPase binding)|go:"GO:0051220"(cytoplasmic sequestering of protein)|go:"GO:0051764"(actin crosslink formation)|go:"GO:0060271"(cilium assembly)|go:"GO:0070062"(extracellular exosome)|go:"GO:0070527"(platelet aggregation)|go:"GO:0071526"(semaphorin-plexin signaling pathway)|go:"GO:0072659"(protein localization to plasma membrane)|go:"GO:0090042"(tubulin deacetylation)|go:"GO:0090307"(mitotic spindle assembly)|go:"GO:0097368"(establishment of Sertoli cell barrier)|go:"GO:0097440"(apical dendrite)|go:"GO:0098794"(postsynapse)|go:"GO:0098978"(glutamatergic synapse)|go:"GO:1900026"(positive regulation of substrate adhesion-dependent cell spreading)|go:"GO:1901381"(positive regulation of potassium ion transmembrane transport)|go:"GO:0046332"(SMAD binding)|go:"GO:0010977"(negative regulation of neuron projection development)|go:"GO:0015459"(potassium channel regulator activity)|go:"GO:0015629"(actin cytoskeleton)|go:"GO:0016020"(membrane)|go:"GO:0016479"(negative regulation of transcription by RNA polymerase I)|go:"GO:0019900"(kinase binding)|go:"GO:0008134"(transcription factor binding)|go:"GO:0021943"(formation of radial glial scaffolds)|go:"GO:0021987"(cerebral cortex development)|go:"GO:0030018"(Z disc)|go:"GO:0030334"(regulation of cell migration)|go:"GO:0030863"(cortical cytoskeleton)|go:"GO:0031267"(small GTPase binding)|go:"GO:0031523"(Myb complex)|go:"GO:0031532"(actin cytoskeleton reorganization)|go:"GO:0031852"(mu-type opioid receptor binding)|go:"GO:0032233"(positive regulation of actin filament bundle assembly)|go:"GO:0032432"(actin filament bundle)|go:"GO:0034394"(protein localization to cell surface)|go:"GO:0034988"(Fc-gamma receptor I complex binding)|go:"GO:0042177"(negative regulation of protein catabolic process)|go:"GO:0042307"(positive regulation of protein import into nucleus)|go:"GO:0042789"(mRNA transcription by RNA polymerase II)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043066"(negative regulation of apoptotic process)|go:"GO:0043113"(receptor clustering)|go:"GO:0043123"(positive regulation of I-kappaB kinase/NF-kappaB signaling)|go:"GO:0043198"(dendritic shaft)|go:"GO:0043204"(perikaryon)|go:"GO:0043433"(negative regulation of DNA-binding transcription factor activity)|go:"GO:0044295"(axonal growth cone)|go:"GO:0044319"(wound healing, spreading of cells)|go:"GO:0044325"(transmembrane transporter binding)|go:"GO:0045022"(early endosome to late endosome transport)|go:"GO:0045184"(establishment of protein localization)|go:"GO:0045216"(cell-cell junction organization)|go:"GO:0045296"(cadherin binding)|reactome:R-HSA-114608|reactome:R-HSA-430116|reactome:R-HSA-446353|reactome:R-HSA-5627123|reactome:R-HSA-8983711|rcsb pdb:6EW1|go:"GO:1905031"(regulation of membrane repolarization during cardiac muscle cell action potential)|go:"GO:2000179"(positive regulation of neural precursor cell proliferation)|go:"GO:2001046"(positive regulation of integrin-mediated signaling pathway)|go:"GO:2001224"(positive regulation of neuron migration)|interpro:IPR001298(Filamin/ABP280 repeat)|interpro:IPR001589(Actinin-type, actin-binding, conserved site)|interpro:IPR001715(Calponin-like actin-binding)|interpro:IPR013783(Immunoglobulin-like fold)|interpro:IPR014756(Immunoglobulin E-set)|interpro:IPR017868|interpro:IPR036872|interpro:IPR044801|mint:P21333|rcsb pdb:2AAV|rcsb pdb:2BP3|rcsb pdb:2BRQ|rcsb pdb:2J3S|rcsb pdb:2JF1|rcsb pdb:2K3T|rcsb pdb:2K7P|rcsb pdb:2K7Q|rcsb pdb:2MTP|rcsb pdb:2W0P|rcsb pdb:2WFN|rcsb pdb:3CNK|rcsb pdb:3HOC|rcsb pdb:3HOP|rcsb pdb:3HOR|rcsb pdb:3ISW|rcsb pdb:3RGH|rcsb pdb:4M9P|rcsb pdb:4P3W|rcsb pdb:5XR1|rcsb pdb:6D8C|go:"GO:1905000"(regulation of membrane repolarization during atrial cardiac muscle cell action potential)|dip:DIP-1136N	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:ZxGK5OSMy8cNsyt7Ax2KXb8bn9M9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q12959	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-357481|ensembl:ENSP00000391732|ensembl:ENSP00000407531|ensembl:ENSP00000499437|uniprotkb:Q12958|uniprotkb:A5YKK7|uniprotkb:B7ZMM0|uniprotkb:B9EIQ5|uniprotkb:D3DXB8|uniprotkb:D3DXB9|uniprotkb:B4DGU1|uniprotkb:B4DGZ8|uniprotkb:E7EWL7|uniprotkb:E9PG21	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:dlg1_human(display_long)|uniprotkb:DLG1(gene name)|psi-mi:DLG1(display_short)|uniprotkb:Synapse-associated protein 97(gene name synonym)|uniprotkb:hDlg(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	reactome:R-HSA-9617324|reactome:R-HSA-9620244|ensembl:ENST00000419354(transcript)|ensembl:ENST00000448528(transcript)|ensembl:ENST00000670935(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0001658"(branching involved in ureteric bud morphogenesis)|go:"GO:0001771"(immunological synapse formation)|go:"GO:0001772"(immunological synapse)|go:"GO:0001935"(endothelial cell proliferation)|go:"GO:0002088"(lens development in camera-type eye)|ensembl:ENSG00000075711(gene)|go:"GO:0004385"(guanylate kinase activity)|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0005604"(basement membrane)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0005789"(endoplasmic reticulum membrane)|go:"GO:0005794"(Golgi apparatus)|go:"GO:0005829"(cytosol)|go:"GO:0005874"(microtubule)|go:"GO:0005886"(plasma membrane)|go:"GO:0005911"(cell-cell junction)|go:"GO:0005923"(bicellular tight junction)|go:"GO:0007015"(actin filament organization)|go:"GO:0007163"(establishment or maintenance of cell polarity)|go:"GO:0007268"(chemical synaptic transmission)|go:"GO:0043113"(receptor clustering)|go:"GO:0043219"(lateral loop)|go:"GO:0043268"(positive regulation of potassium ion transport)|go:"GO:0045197"(establishment or maintenance of epithelial cell apical/basal polarity)|go:"GO:0045296"(cadherin binding)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0048608"(reproductive structure development)|go:"GO:0048704"(embryonic skeletal system morphogenesis)|go:"GO:0043622"(cortical microtubule organization)|go:"GO:0048745"(smooth muscle tissue development)|go:"GO:0050680"(negative regulation of epithelial cell proliferation)|go:"GO:0051660"(establishment of centrosome localization)|go:"GO:0051898"(negative regulation of protein kinase B signaling)|go:"GO:0060022"(hard palate development)|go:"GO:0060090"(molecular adaptor activity)|go:"GO:0070062"(extracellular exosome)|go:"GO:0070373"(negative regulation of ERK1 and ERK2 cascade)|go:"GO:0070830"(bicellular tight junction assembly)|go:"GO:0072659"(protein localization to plasma membrane)|go:"GO:0097016"(L27 domain binding)|go:"GO:0097025"(MPP7-DLG1-LIN7 complex)|go:"GO:0097060"(synaptic membrane)|go:"GO:0097120"(receptor localization to synapse)|go:"GO:0098609"(cell-cell adhesion)|go:"GO:0098839"(postsynaptic density membrane)|go:"GO:0098911"(regulation of ventricular cardiac muscle cell action potential)|go:"GO:0098919"(structural constituent of postsynaptic density)|go:"GO:0098978"(glutamatergic synapse)|go:"GO:0099645"(neurotransmitter receptor localization to postsynaptic specialization membrane)|go:"GO:1902305"(regulation of sodium ion transmembrane transport)|go:"GO:1902473"(regulation of protein localization to synapse)|go:"GO:1903078"(positive regulation of protein localization to plasma membrane)|go:"GO:1903286"(regulation of potassium ion import)|go:"GO:1903753"(negative regulation of p38MAPK cascade)|go:"GO:1903760"(regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization)|go:"GO:1903764"(regulation of potassium ion export across plasma membrane)|go:"GO:2000134"(negative regulation of G1/S transition of mitotic cell cycle)|interpro:IPR001452(Src homology-3)|go:"GO:0044325"(transmembrane transporter binding)|go:"GO:0045121"(membrane raft)|refseq:NP_001091894.1|refseq:NP_001191315.1|refseq:NP_001191316.1|refseq:NP_001191317.1|refseq:NP_004078.2|go:"GO:0008092"(cytoskeletal protein binding)|go:"GO:0008284"(positive regulation of cell population proliferation)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0014704"(intercalated disc)|go:"GO:0015459"(potassium channel regulator activity)|go:"GO:0016323"(basolateral plasma membrane)|go:"GO:0016324"(apical plasma membrane)|go:"GO:0016328"(lateral plasma membrane)|go:"GO:0019901"(protein kinase binding)|go:"GO:0019902"(phosphatase binding)|go:"GO:0030054"(cell junction)|go:"GO:0030432"(peristalsis)|go:"GO:0030838"(positive regulation of actin filament polymerization)|go:"GO:0030866"(cortical actin cytoskeleton organization)|go:"GO:0030953"(astral microtubule organization)|go:"GO:0031253"(cell projection membrane)|go:"GO:0031434"(mitogen-activated protein kinase kinase binding)|go:"GO:0031579"(membrane raft organization)|go:"GO:0031594"(neuromuscular junction)|go:"GO:0031641"(regulation of myelination)|go:"GO:0008022"(protein C-terminus binding)|go:"GO:0032147"(activation of protein kinase activity)|go:"GO:0033268"(node of Ranvier)|go:"GO:0034629"|go:"GO:0035748"(myelin sheath abaxonal region)|go:"GO:0042110"(T cell activation)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0042383"(sarcolemma)|go:"GO:0042391"(regulation of membrane potential)|go:"GO:0042982"(amyloid precursor protein metabolic process)|go:"GO:0043005"(neuron projection)|interpro:IPR019583|interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR019590|interpro:IPR020590|interpro:IPR027417|interpro:IPR036028|interpro:IPR036034|interpro:IPR036892|mint:Q12959|rcsb pdb:1PDR|rcsb pdb:2M3M|rcsb pdb:2OQS|rcsb pdb:2X7Z|rcsb pdb:3LRA|rcsb pdb:3RL7|rcsb pdb:3RL8|rcsb pdb:3W9Y|rcsb pdb:4AMH|rcsb pdb:4G69|reactome:R-HSA-399719|interpro:IPR004172(L27)|interpro:IPR008144(Guanylate kinase)|reactome:R-HSA-438066|interpro:IPR008145(Guanylate kinase/L-type calcium channel region)|interpro:IPR015143(L27-1)|interpro:IPR016313("Membrane-associated guanylate kinase (MAGUK) scaffold protein")|reactome:R-HSA-442982|reactome:R-HSA-447038|reactome:R-HSA-451308|reactome:R-HSA-5673001|reactome:R-HSA-8849932|reactome:R-HSA-9609736|refseq:XP_011510804.1|refseq:XP_011510807.1|refseq:XP_011510808.1|refseq:XP_005269346.1|refseq:NP_001277912.1|refseq:XP_016861289.1|refseq:XP_016861290.1|refseq:XP_016861291.1|refseq:XP_016861292.1|refseq:XP_016861294.1|refseq:XP_016861295.1|refseq:XP_016861296.1|refseq:XP_016861297.1|refseq:XP_016861298.1|refseq:XP_016861305.1|refseq:XP_016861306.1|refseq:XP_016861307.1|refseq:XP_016861308.1|refseq:XP_016861309.1|dip:DIP-33957N|refseq:XP_011510805.1|refseq:XP_016861299.1	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:ax5sUROdL8kF59RhocRWG6tUUkc9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9Y5B9	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-1046849|uniprotkb:Q6GMT8|uniprotkb:Q6P2F1|uniprotkb:Q6PJM1|uniprotkb:Q9NRX0|ensembl:ENSP00000216297	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:sp16h_human(display_long)|uniprotkb:Facilitates chromatin transcription complex subunit SPT16(gene name synonym)|uniprotkb:FACT 140 kDa subunit(gene name synonym)|uniprotkb:FACTp140(gene name synonym)|uniprotkb:Chromatin-specific transcription elongation factor 140 kDa subunit(gene name synonym)|uniprotkb:SUPT16H(gene name)|psi-mi:SUPT16H(display_short)|uniprotkb:FACT140(gene name synonym)|uniprotkb:FACTP140(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	ensembl:ENSG00000092201(gene)|ensembl:ENST00000216297(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006260"(DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0006337"(nucleosome disassembly)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0006368"(transcription elongation from RNA polymerase II promoter)|go:"GO:0031491"(nucleosome binding)|go:"GO:0032786"(positive regulation of DNA-templated transcription, elongation)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0034724"(DNA replication-independent chromatin organization)|go:"GO:0035101"(FACT complex)|interpro:IPR000994(Peptidase M24, catalytic core)|interpro:IPR011993(Pleckstrin homology-type)|interpro:IPR013719(Region of unknown function DUF1747, eukaryote)|interpro:IPR013953(FACT complex subunit Spt16p/Cdc68p)|interpro:IPR029148|interpro:IPR029149|interpro:IPR033825|interpro:IPR036005|interpro:IPR040258|mint:Q9Y5B9|rcsb pdb:4Z2M|rcsb pdb:4Z2N|rcsb pdb:5E5B|rcsb pdb:5UMT|rcsb pdb:5UMU|rcsb pdb:5XM2|rcsb pdb:6UPK|rcsb pdb:6UPL|reactome:R-HSA-112382|reactome:R-HSA-167152|reactome:R-HSA-167200|reactome:R-HSA-167238|reactome:R-HSA-167243|reactome:R-HSA-167246|reactome:R-HSA-167287|reactome:R-HSA-167290|reactome:R-HSA-674695|reactome:R-HSA-6796648|reactome:R-HSA-6804756|reactome:R-HSA-75955|refseq:NP_009123.1|dip:DIP-42757N	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:jLK5dOF3mEyI0UbZhcNgtdlG+WI9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q14191	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-368417|uniprotkb:A1KYY9|ensembl:ENSP00000298139	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:wrn_human(display_long)|uniprotkb:WRN(gene name)|psi-mi:WRN(display_short)|uniprotkb:RECQ3(gene name synonym)|uniprotkb:RECQL2(gene name synonym)|uniprotkb:Exonuclease WRN(gene name synonym)|uniprotkb:RecQ protein-like 2(gene name synonym)|uniprotkb:DNA helicase, RecQ-like type 3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_000544.2|go:"GO:0061820"(telomeric D-loop disassembly)|go:"GO:0061821"(telomeric D-loop binding)|go:"GO:0061849"(telomeric G-quadruplex DNA binding)|go:"GO:0070337"(3'-flap-structured DNA binding)|go:"GO:0071480"(cellular response to gamma radiation)|go:"GO:0090399"(replicative senescence)|go:"GO:0090656"(t-circle formation)|go:"GO:0098530"(positive regulation of strand invasion)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|go:"GO:1902570"(protein localization to nucleolus)|go:"GO:1905773"(8-hydroxy-2'-deoxyguanosine DNA binding)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR002121(Helicase and RNase D C-terminal, HRDC)|interpro:IPR002562(3'-5' exonuclease)|interpro:IPR004589(DNA helicase, ATP-dependent, RecQ type)|interpro:IPR010997(HRDC-like)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR018982|interpro:IPR027417|interpro:IPR029491|interpro:IPR032284|interpro:IPR036388|interpro:IPR036390|interpro:IPR036397|mint:Q14191|rcsb pdb:2AXL|rcsb pdb:2DGZ|rcsb pdb:2E1E|rcsb pdb:2E1F|rcsb pdb:2FBT|rcsb pdb:2FBV|rcsb pdb:2FBX|go:"GO:0061749"(forked DNA-dependent helicase activity)|rcsb pdb:2FBY|rcsb pdb:3AAF|rcsb pdb:6TYV|rcsb pdb:6YHR|reactome:R-HSA-174414|reactome:R-HSA-174437|reactome:R-HSA-3108214|reactome:R-HSA-5685938|reactome:R-HSA-5685942|reactome:R-HSA-5693554|reactome:R-HSA-5693568|reactome:R-HSA-5693579|reactome:R-HSA-5693607|reactome:R-HSA-5693616|reactome:R-HSA-6804756|reactome:R-HSA-69473|rcsb pdb:2FC0|ensembl:ENSG00000165392(gene)|ensembl:ENST00000298139(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0000400"(four-way junction DNA binding)|go:"GO:0000403"(Y-form DNA binding)|go:"GO:0000405"(bubble DNA binding)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000724"(double-strand break repair via homologous recombination)|go:"GO:0000731"(DNA synthesis involved in DNA repair)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003677"(DNA binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0003682"(chromatin binding)|go:"GO:0004527"(exonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005657"(replication fork)|go:"GO:0005694"(chromosome)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0007420"(brain development)|go:"GO:0007568"(aging)|go:"GO:0007569"(cell aging)|go:"GO:0008408"(3'-5' exonuclease activity)|go:"GO:0009267"(cellular response to starvation)|go:"GO:0009378"(four-way junction helicase activity)|go:"GO:0010225"(response to UV-C)|go:"GO:0010259"(multicellular organism aging)|go:"GO:0016607"(nuclear speck)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0030145"(manganese ion binding)|go:"GO:0031297"(replication fork processing)|go:"GO:0005730"(nucleolus)|go:"GO:0032201"(telomere maintenance via semi-conservative replication)|go:"GO:0032405"(MutLalpha complex binding)|go:"GO:0032508"(DNA duplex unwinding)|go:"GO:0040009"(regulation of growth rate)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0042981"(regulation of apoptotic process)|go:"GO:0043005"(neuron projection)|go:"GO:0043138"(3'-5' DNA helicase activity)|go:"GO:0005813"(centrosome)|go:"GO:0006259"(DNA metabolic process)|go:"GO:0006260"(DNA replication)|go:"GO:0044806"(G-quadruplex DNA unwinding)|go:"GO:0006268"(DNA unwinding involved in DNA replication)|go:"GO:0044877"(protein-containing complex binding)|go:"GO:0051345"(positive regulation of hydrolase activity)|go:"GO:0051880"(G-quadruplex DNA binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006284"(base-excision repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006310"(DNA recombination)|dip:DIP-31380N	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:AKmM4xnux0/lA9uEzk7yvug/Wng9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9UGN5	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-2795348|uniprotkb:Q8TEU4|uniprotkb:Q9NUV2|uniprotkb:Q9UMR4|uniprotkb:Q9Y6C8|ensembl:ENSP00000250416	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:parp2_human(display_long)|uniprotkb:PARP2(gene name)|psi-mi:PARP2(display_short)|uniprotkb:ADPRT2(gene name synonym)|uniprotkb:ADPRTL2(gene name synonym)|uniprotkb:"NAD(+) ADP-ribosyltransferase 2"(gene name synonym)|uniprotkb:Poly[ADP-ribose] synthase 2(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 2(gene name synonym)|uniprotkb:DNA ADP-ribosyltransferase PARP2(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase PARP2(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001036083.1|refseq:NP_005475.2|ensembl:ENSG00000129484(gene)|ensembl:ENST00000250416(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003682"(chromatin binding)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006281"(DNA repair)|go:"GO:0006284"(base-excision repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0016570"(histone modification)|go:"GO:0018312"(peptidyl-serine ADP-ribosylation)|go:"GO:0030592"(DNA ADP-ribosylation)|go:"GO:0031491"(nucleosome binding)|go:"GO:0061051"(positive regulation of cell growth involved in cardiac muscle cell development)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0090734"(site of DNA damage)|go:"GO:0097191"(extrinsic apoptotic signaling pathway)|go:"GO:0140294"(NAD DNA ADP-ribosyltransferase activity)|go:"GO:1901215"(negative regulation of neuron death)|go:"GO:1990404"(protein ADP-ribosylase activity)|interpro:IPR004102("Poly(ADP-ribose) polymerase, regulatory region")|interpro:IPR008893(WGR)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR036616|go:"GO:0005634"(nucleus)|interpro:IPR036930|mint:Q9UGN5|rcsb pdb:3KCZ|rcsb pdb:3KJD|rcsb pdb:4PJV|rcsb pdb:4TVJ|rcsb pdb:4ZZX|rcsb pdb:4ZZY|rcsb pdb:5D5K|rcsb pdb:5DSY|rcsb pdb:6F1K|rcsb pdb:6F5B|rcsb pdb:6F5F|rcsb pdb:6TX3|rcsb pdb:6USJ|rcsb pdb:6X0L|rcsb pdb:6X0M|rcsb pdb:6X0N|rcsb pdb:7AEO|reactome:R-HSA-110362|reactome:R-HSA-5685939|reactome:R-HSA-5696394|reactome:R-HSA-5696395|reactome:R-HSA-5696400|dip:DIP-48934N	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:0sLs7K5dQNmmhUwnGT9UIvparjU9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P49916	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-1753381|intact:EBI-1058758|uniprotkb:Q16714|uniprotkb:Q6NVK3|ensembl:ENSP00000367787|uniprotkb:E5KLB5|uniprotkb:E5KLB6	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:dnli3_human(display_long)|uniprotkb:LIG3(gene name)|psi-mi:LIG3(display_short)|uniprotkb:DNA ligase III(gene name synonym)|uniprotkb:Polydeoxyribonucleotide synthase [ATP] 3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_002302.2|refseq:NP_039269.2|go:"GO:0007005"(mitochondrion organization)|go:"GO:0007049"(cell cycle)|go:"GO:0008270"(zinc ion binding)|go:"GO:0043504"(mitochondrial DNA repair)|go:"GO:0051301"(cell division)|go:"GO:0070421"(DNA ligase III-XRCC1 complex)|go:"GO:0071897"(DNA biosynthetic process)|go:"GO:0090298"(negative regulation of mitochondrial DNA replication)|go:"GO:0097681"(double-strand break repair via alternative nonhomologous end joining)|interpro:IPR000977(ATP-dependent DNA ligase)|interpro:IPR001357(BRCT)|interpro:IPR001510(Zinc finger, PARP-type)|interpro:IPR012308(DNA ligase, N-terminal)|interpro:IPR012309(ATP dependent DNA ligase, C-terminal)|interpro:IPR012310(ATP dependent DNA ligase, central)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR016059(ATP-dependent DNA ligase, conserved site)|interpro:IPR031916|interpro:IPR036420|interpro:IPR036599|interpro:IPR036957|mint:P49916|rcsb pdb:1IMO|rcsb pdb:1IN1|rcsb pdb:1UW0|rcsb pdb:3L2P|rcsb pdb:3PC7|rcsb pdb:3PC8|rcsb pdb:3QVG|rcsb pdb:6WH1|reactome:R-HSA-110381|reactome:R-HSA-5649702|reactome:R-HSA-5685939|reactome:R-HSA-5696397|reactome:R-HSA-6782210|ensembl:ENSG00000005156(gene)|ensembl:ENST00000378526(transcript)|go:"GO:0000724"(double-strand break repair via homologous recombination)|go:"GO:0003677"(DNA binding)|go:"GO:0003909"(DNA ligase activity)|go:"GO:0003910"("DNA ligase (ATP) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005739"(mitochondrion)|go:"GO:0006266"(DNA ligation)|go:"GO:0006273"(lagging strand elongation)|go:"GO:0006287"(base-excision repair, gap-filling)|go:"GO:0006288"(base-excision repair, DNA ligation)|go:"GO:0006302"(double-strand break repair)|refseq:XP_016880113.1	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:+GqYPnth9+VqCoh1TvPG4yEDLeo9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q86WJ1	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-2340020|intact:EBI-2857214|uniprotkb:Q53EZ3|uniprotkb:Q9NVV8|uniprotkb:Q86XH3|uniprotkb:Q5VXX7|uniprotkb:A5YM64|uniprotkb:Q6PK83|uniprotkb:Q96SP3|uniprotkb:Q9BVJ1|uniprotkb:Q6DD94|uniprotkb:Q96HF7|uniprotkb:B4DDE1|uniprotkb:B5MDZ7|ensembl:ENSP00000358262	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:chd1l_human(display_long)|uniprotkb:CHD1L(gene name)|psi-mi:CHD1L(display_short)|uniprotkb:ALC1(gene name synonym)|uniprotkb:Amplified in liver cancer protein 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001243267.1|refseq:NP_004275.4|dip:DIP-48933N|refseq:NP_001335382.1|refseq:NP_078844.2|refseq:NP_001243266.1|refseq:NP_001335385.1|refseq:NP_001335386.1|refseq:NP_001335387.1|refseq:NP_001335388.1|refseq:NP_001335389.1|refseq:NP_001335390.1|refseq:NP_001335391.1|refseq:NP_001335392.1|refseq:NP_001335393.1|refseq:NP_001335394.1|refseq:NP_001335395.1|ensembl:ENSG00000131778(gene)|ensembl:ENST00000369258(transcript)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006281"(DNA repair)|go:"GO:0006338"(chromatin remodeling)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0070615"|go:"GO:0140603"(obsolete ATP hydrolysis activity)|interpro:IPR000330(SNF2-related)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR002464(DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site)|interpro:IPR002589(Appr-1-p processing)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|interpro:IPR031053|interpro:IPR038718|interpro:IPR043472|mint:Q86WJ1|rcsb pdb:6ZHX|rcsb pdb:6ZHY|reactome:R-HSA-5696395|reactome:R-HSA-5696400	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:e8j47togv1uhkm+TwhWyG6OxiiE9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9H2K2	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-4398527|uniprotkb:Q9H8F2|uniprotkb:Q9HAS4|uniprotkb:B2RBD3|ensembl:ENSP00000360689	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:tnks2_human(display_long)|uniprotkb:TNKS2(gene name)|psi-mi:TNKS2(display_short)|uniprotkb:PARP5B(gene name synonym)|uniprotkb:TANK2(gene name synonym)|uniprotkb:TNKL(gene name synonym)|uniprotkb:Poly [ADP-ribose] polymerase 5B(gene name synonym)|uniprotkb:TNKS-2(gene name synonym)|uniprotkb:TRF1-interacting ankyrin-related ADP-ribose polymerase 2(gene name synonym)|uniprotkb:Tankyrase II(gene name synonym)|uniprotkb:Tankyrase-like protein(gene name synonym)|uniprotkb:Tankyrase-related protein(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 6(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase tankyrase-2(gene name synonym)|uniprotkb:Tankyrase-2(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_079511.1|dip:DIP-42098N|rcsb pdb:3P0Q|rcsb pdb:3TWQ|rcsb pdb:3TWR|rcsb pdb:3TWS|rcsb pdb:3TWT|rcsb pdb:3TWU|rcsb pdb:3TWV|rcsb pdb:3TWW|rcsb pdb:3TWX|rcsb pdb:3U9H|rcsb pdb:3U9Y|rcsb pdb:3UA9|rcsb pdb:3W51|rcsb pdb:4AVU|rcsb pdb:4AVW|rcsb pdb:4BFP|rcsb pdb:4BJ9|rcsb pdb:4BJB|rcsb pdb:4BJC|rcsb pdb:4BS4|rcsb pdb:4BU3|rcsb pdb:4BU5|rcsb pdb:4BU6|rcsb pdb:4BU7|rcsb pdb:4BU8|rcsb pdb:4BU9|rcsb pdb:4BUA|rcsb pdb:4BUD|rcsb pdb:4BUE|rcsb pdb:4BUF|rcsb pdb:4BUI|rcsb pdb:4BUS|rcsb pdb:4BUT|rcsb pdb:4BUU|rcsb pdb:4BUV|rcsb pdb:4BUW|rcsb pdb:4BUX|rcsb pdb:4BUY|rcsb pdb:4HKI|rcsb pdb:4HKK|rcsb pdb:4HKN|ensembl:ENSG00000107854(gene)|ensembl:ENST00000371627(transcript)|go:"GO:0000139"(Golgi membrane)|go:"GO:0000209"(protein polyubiquitination)|go:"GO:0000242"(pericentriolar material)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005635"(nuclear envelope)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0019899"(enzyme binding)|go:"GO:0032212"(positive regulation of telomere maintenance via telomerase)|go:"GO:0035264"(multicellular organism growth)|go:"GO:0040014"(regulation of multicellular organism growth)|go:"GO:0046872"(metal ion binding)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0070198"(protein localization to chromosome, telomeric region)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|go:"GO:1904355"(positive regulation of telomere capping)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1990404"(protein ADP-ribosylase activity)|interpro:IPR001660(Sterile alpha motif SAM)|interpro:IPR002110(Ankyrin)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR013761(Sterile alpha motif-type)|interpro:IPR020683|interpro:IPR036770|mint:Q9H2K2|rcsb pdb:2Y0I|rcsb pdb:3KR7|rcsb pdb:3KR8|rcsb pdb:3MHJ|rcsb pdb:3MHK|rcsb pdb:3P0N|rcsb pdb:3P0P|rcsb pdb:6TKP|rcsb pdb:6TKQ|rcsb pdb:6TKR|rcsb pdb:6TKS|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5545619|reactome:R-HSA-5689880|reactome:R-HSA-8948751|rcsb pdb:6TKN|rcsb pdb:4HL5|rcsb pdb:4HLF|rcsb pdb:4HLG|rcsb pdb:4HLH|rcsb pdb:4HLK|rcsb pdb:4HLM|rcsb pdb:4HMH|rcsb pdb:4HYF|rcsb pdb:4IUE|rcsb pdb:4J1Z|rcsb pdb:4J21|rcsb pdb:4J22|rcsb pdb:4J3L|rcsb pdb:4J3M|rcsb pdb:4KZL|rcsb pdb:4KZQ|rcsb pdb:4KZU|rcsb pdb:4L09|rcsb pdb:4L0B|rcsb pdb:4L0I|rcsb pdb:4L0T|rcsb pdb:4L0V|rcsb pdb:4L10|rcsb pdb:4L2F|rcsb pdb:4L2G|rcsb pdb:4L2K|rcsb pdb:4L31|rcsb pdb:4L32|rcsb pdb:4L33|rcsb pdb:4L34|rcsb pdb:4M7B|rcsb pdb:4PML|rcsb pdb:4PNL|rcsb pdb:4PNM|rcsb pdb:4PNN|rcsb pdb:4PNQ|rcsb pdb:4PNR|rcsb pdb:4PNS|rcsb pdb:4PNT|rcsb pdb:4TJU|rcsb pdb:4TJW|rcsb pdb:4TJY|rcsb pdb:4TK0|rcsb pdb:4TK5|rcsb pdb:4TKF|rcsb pdb:4TKG|rcsb pdb:4TKI|rcsb pdb:4UFU|rcsb pdb:4UFY|rcsb pdb:4UHG|rcsb pdb:4UI3|rcsb pdb:4UI4|rcsb pdb:4UI5|rcsb pdb:4UI6|rcsb pdb:4UI7|rcsb pdb:4UI8|rcsb pdb:4UVL|rcsb pdb:4UVN|rcsb pdb:4UVO|rcsb pdb:4UVP|rcsb pdb:4UVS|rcsb pdb:4UVT|rcsb pdb:4UVU|rcsb pdb:4UVV|rcsb pdb:4UVW|rcsb pdb:4UVX|rcsb pdb:4UVY|rcsb pdb:4UVZ|rcsb pdb:4UX4|rcsb pdb:4W5I|rcsb pdb:4Z68|rcsb pdb:5ADQ|rcsb pdb:5ADR|rcsb pdb:5ADS|rcsb pdb:5ADT|rcsb pdb:5AEH|rcsb pdb:5AKU|rcsb pdb:5AKW|rcsb pdb:5AL1|rcsb pdb:5AL2|rcsb pdb:5AL3|rcsb pdb:5AL4|rcsb pdb:5AL5|rcsb pdb:5BXO|rcsb pdb:5BXU|rcsb pdb:5C5P|rcsb pdb:4L0S|rcsb pdb:5C5Q|rcsb pdb:5C5R|rcsb pdb:5DCZ|rcsb pdb:5FPF|rcsb pdb:5FPG|rcsb pdb:5JRT|rcsb pdb:5NOB|rcsb pdb:5NSP|rcsb pdb:5NUT|rcsb pdb:5OWS|rcsb pdb:5OWT|rcsb pdb:6TG4|rcsb pdb:6TKM	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:pf0mQR/in4ShtYc1xmCF042/v/A9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q14527	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-1045161|uniprotkb:Q14536|uniprotkb:Q16051|uniprotkb:Q7KYJ6|uniprotkb:Q86YA5|uniprotkb:Q92652|uniprotkb:Q96KM9|uniprotkb:D3DNH3|ensembl:ENSP00000308944|ensembl:ENSP00000376644|ensembl:ENSP00000420429	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:hltf_human(display_long)|uniprotkb:SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3(gene name synonym)|uniprotkb:Sucrose nonfermenting protein 2-like 3(gene name synonym)|uniprotkb:DNA-binding protein/plasminogen activator inhibitor 1 regulator(gene name synonym)|uniprotkb:HIP116(gene name synonym)|uniprotkb:RING finger protein 80(gene name synonym)|uniprotkb:HLTF(gene name)|psi-mi:HLTF(display_short)|uniprotkb:HIP116A(gene name synonym)|uniprotkb:RNF80(gene name synonym)|uniprotkb:SNF2L3(gene name synonym)|uniprotkb:ZBU1(gene name synonym)|uniprotkb:SMARCA3(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase HLTF(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001305863.1|refseq:NP_001305864.1|refseq:NP_003062.2|refseq:NP_620636.1|refseq:XP_016862568.1|dip:DIP-29828N|ensembl:ENSG00000071794(gene)|ensembl:ENST00000310053(transcript)|ensembl:ENST00000392912(transcript)|ensembl:ENST00000494055(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0004386"(helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006325"(chromatin organization)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016020"(membrane)|go:"GO:0016567"(protein ubiquitination)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070615"|interpro:IPR000330(SNF2-related)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR014905(HIRAN)|interpro:IPR017907|interpro:IPR027417|interpro:IPR038718|mint:Q14527|rcsb pdb:2MZN|rcsb pdb:4HRE|rcsb pdb:4HRH|rcsb pdb:4S0N|rcsb pdb:4XZF|rcsb pdb:4XZG|rcsb pdb:5BNH|rcsb pdb:5K5F|rcsb pdb:6KCS|reactome:R-HSA-8866654	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:ozxGwYPSrDJ+Fg3F64VfE0Bc0wM9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:O95271	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-1105254|uniprotkb:O95272|uniprotkb:Q4G0F2|intact:EBI-28985643|ensembl:ENSP00000311579	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:tnks1_human(display_long)|uniprotkb:TNKS(gene name)|psi-mi:TNKS(display_short)|uniprotkb:PARP5A(gene name synonym)|uniprotkb:PARPL(gene name synonym)|uniprotkb:TIN1(gene name synonym)|uniprotkb:TINF1(gene name synonym)|uniprotkb:TNKS1(gene name synonym)|uniprotkb:Tankyrase I(gene name synonym)|uniprotkb:TNKS-1(gene name synonym)|uniprotkb:TRF1-interacting ankyrin-related ADP-ribose polymerase(gene name synonym)|uniprotkb:Poly [ADP-ribose] polymerase 5A(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 5(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase tankyrase-1(gene name synonym)|uniprotkb:Tankyrase-1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_003738.2|rcsb pdb:5JHQ|rcsb pdb:5JTI|rcsb pdb:5JU5|rcsb pdb:5KNI|rcsb pdb:6QXU|rcsb pdb:6URQ|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5545619|reactome:R-HSA-5689880|reactome:R-HSA-8948751|rcsb pdb:5GP7|ensembl:ENSP00000311579|ensembl:ENSG00000173273(gene)|ensembl:ENST00000310430(transcript)|go:"GO:0000139"(Golgi membrane)|go:"GO:0000209"(protein polyubiquitination)|go:"GO:0000242"(pericentriolar material)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005643"(nuclear pore)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005794"(Golgi apparatus)|go:"GO:0005829"(cytosol)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0007052"(mitotic spindle organization)|go:"GO:0008270"(zinc ion binding)|go:"GO:0015031"(protein transport)|go:"GO:0016604"(nuclear body)|go:"GO:0018105"(peptidyl-serine phosphorylation)|go:"GO:0018107"(peptidyl-threonine phosphorylation)|go:"GO:0031670"(cellular response to nutrient)|go:"GO:0031965"(nuclear membrane)|go:"GO:0032210"(regulation of telomere maintenance via telomerase)|go:"GO:0032212"(positive regulation of telomere maintenance via telomerase)|go:"GO:0042393"(histone binding)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0051028"(mRNA transport)|go:"GO:0051225"(spindle assembly)|go:"GO:0051301"(cell division)|go:"GO:0051973"(positive regulation of telomerase activity)|go:"GO:0070198"(protein localization to chromosome, telomeric region)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|go:"GO:0097431"(mitotic spindle pole)|go:"GO:1904355"(positive regulation of telomere capping)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1904743"(negative regulation of telomeric DNA binding)|go:"GO:1904908"(negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric)|go:"GO:1990404"(protein ADP-ribosylase activity)|interpro:IPR001660(Sterile alpha motif SAM)|interpro:IPR002110(Ankyrin)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR013761(Sterile alpha motif-type)|interpro:IPR020683|interpro:IPR028731|interpro:IPR036770|mint:O95271|rcsb pdb:2RF5|rcsb pdb:3UDD|rcsb pdb:3UH2|rcsb pdb:3UH4|rcsb pdb:4DVI|rcsb pdb:4I9I|go:"GO:0016055"(Wnt signaling pathway)|rcsb pdb:4K4F|rcsb pdb:4KRS|rcsb pdb:4LI6|rcsb pdb:4LI7|rcsb pdb:4LI8|rcsb pdb:4MSG|rcsb pdb:4MSK|rcsb pdb:4MT9|rcsb pdb:4N3R|rcsb pdb:4N4V|rcsb pdb:4OA7|rcsb pdb:4TOR|rcsb pdb:4TOS|rcsb pdb:4U6A|rcsb pdb:4UUH|rcsb pdb:4UW1|rcsb pdb:4K4E|rcsb pdb:4W5S|rcsb pdb:4W6E|rcsb pdb:5EBT|rcsb pdb:5ECE|rcsb pdb:5ETY|dip:DIP-36652N	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:0WKEfg5OMAISQutoJb2w+hBfmOU9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P09874	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-355676|uniprotkb:Q8IUZ9|uniprotkb:B1ANJ4|ensembl:ENSP00000355759	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:parp1_human(display_long)|uniprotkb:PARP1(gene name)|psi-mi:PARP1(display_short)|uniprotkb:ADPRT(gene name synonym)|uniprotkb:PPOL(gene name synonym)|uniprotkb:"NAD(+) ADP-ribosyltransferase 1"(gene name synonym)|uniprotkb:Poly[ADP-ribose] synthase 1(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 1(gene name synonym)|uniprotkb:DNA ADP-ribosyltransferase PARP1(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase PARP1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001609.2|rcsb pdb:7AAC|rcsb pdb:7AAD|rcsb pdb:6NRJ|rcsb pdb:6NTU|rcsb pdb:7CMW|rcsb pdb:6VKK|rcsb pdb:7KK2|rcsb pdb:7KK3|rcsb pdb:7KK4|rcsb pdb:7KK5|rcsb pdb:7KK6|reactome:R-HSA-110362|reactome:R-HSA-192814|reactome:R-HSA-2173795|reactome:R-HSA-3108214|reactome:R-HSA-5685939|reactome:R-HSA-5696394|reactome:R-HSA-5696395|reactome:R-HSA-5696400|rcsb pdb:6VKO|rcsb pdb:6VKQ|rcsb pdb:6XVW|rcsb pdb:7AAA|rcsb pdb:7AAB|ensembl:ENSG00000143799(gene)|ensembl:ENST00000366794(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005635"(nuclear envelope)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005667"(transcription regulator complex)|go:"GO:0005730"(nucleolus)|go:"GO:0005739"(mitochondrion)|go:"GO:0006281"(DNA repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0006915"(apoptotic process)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007005"(mitochondrion organization)|go:"GO:0007179"(transforming growth factor beta receptor signaling pathway)|go:"GO:0008134"(transcription factor binding)|go:"GO:0010332"(response to gamma radiation)|go:"GO:0010613"(positive regulation of cardiac muscle hypertrophy)|go:"GO:0010990"(regulation of SMAD protein complex assembly)|go:"GO:0016020"(membrane)|go:"GO:0016540"(protein autoprocessing)|go:"GO:0016604"(nuclear body)|go:"GO:0018312"(peptidyl-serine ADP-ribosylation)|go:"GO:0018424"(peptidyl-glutamic acid poly-ADP-ribosylation)|go:"GO:0019899"(enzyme binding)|go:"GO:0019901"(protein kinase binding)|go:"GO:0023019"(signal transduction involved in regulation of gene expression)|go:"GO:0030225"(macrophage differentiation)|go:"GO:0030331"(estrogen receptor binding)|go:"GO:0030592"(DNA ADP-ribosylation)|go:"GO:0032042"(mitochondrial DNA metabolic process)|go:"GO:0032869"(cellular response to insulin stimulus)|go:"GO:0032991"(protein-containing complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0035861"(site of double-strand break)|go:"GO:0036211"(protein modification process)|go:"GO:0042769"(obsolete DNA damage response, detection of DNA damage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042826"(histone deacetylase binding)|go:"GO:0043504"(mitochondrial DNA repair)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0047485"(protein N-terminus binding)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:0051287"(NAD binding)|go:"GO:0051901"(positive regulation of mitochondrial depolarization)|go:"GO:0060391"(positive regulation of SMAD protein signal transduction)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0033148"(positive regulation of intracellular estrogen receptor signaling pathway)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0034599"(cellular response to oxidative stress)|go:"GO:0070412"(R-SMAD binding)|go:"GO:0034644"(cellular response to UV)|go:"GO:0071294"(cellular response to zinc ion)|go:"GO:0090734"(site of DNA damage)|go:"GO:0140294"(NAD DNA ADP-ribosyltransferase activity)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1901216"(positive regulation of neuron death)|go:"GO:1903376"(regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway)|go:"GO:1903518"(positive regulation of single strand break repair)|go:"GO:1904044"(response to aldosterone)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1904646"(cellular response to amyloid-beta)|go:"GO:1904762"(positive regulation of myofibroblast differentiation)|go:"GO:1905168"(positive regulation of double-strand break repair via homologous recombination)|go:"GO:1990404"(protein ADP-ribosylase activity)|go:"GO:1990966"(ATP generation from poly-ADP-D-ribose)|go:"GO:2000679"(positive regulation of transcription regulatory region DNA binding)|go:"GO:2001170"(negative regulation of ATP biosynthetic process)|interpro:IPR001357(BRCT)|interpro:IPR001510(Zinc finger, PARP-type)|interpro:IPR004102("Poly(ADP-ribose) polymerase, regulatory region")|interpro:IPR008288(NAD+ ADP-ribosyltransferase)|interpro:IPR008893(WGR)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR012982(PADR1)|interpro:IPR036420|interpro:IPR036616|interpro:IPR036930|interpro:IPR036957|interpro:IPR038650|mint:P09874|rcsb pdb:1UK0|rcsb pdb:1UK1|rcsb pdb:1WOK|rcsb pdb:2COK|rcsb pdb:2CR9|rcsb pdb:2CS2|rcsb pdb:2DMJ|rcsb pdb:2JVN|go:"GO:1903827"|rcsb pdb:2L30|rcsb pdb:2N8A|rcsb pdb:2RCW|rcsb pdb:2RD6|rcsb pdb:2RIQ|rcsb pdb:2L31|rcsb pdb:3GJW|rcsb pdb:3GN7|rcsb pdb:3L3L|rcsb pdb:3L3M|rcsb pdb:3OD8|rcsb pdb:3ODA|rcsb pdb:3ODC|rcsb pdb:3ODE|rcsb pdb:4AV1|rcsb pdb:4DQY|rcsb pdb:4GV7|rcsb pdb:4HHY|rcsb pdb:4HHZ|rcsb pdb:4L6S|rcsb pdb:4OPX|rcsb pdb:4OQA|rcsb pdb:4OQB|rcsb pdb:4PJT|rcsb pdb:4R5W|rcsb pdb:4R6E|rcsb pdb:4RV6|rcsb pdb:4UND|rcsb pdb:4UXB|rcsb pdb:4XHU|rcsb pdb:5A00|rcsb pdb:5DS3|rcsb pdb:5HA9|rcsb pdb:5KPN|rcsb pdb:5KPO|rcsb pdb:5KPP|rcsb pdb:5KPQ|rcsb pdb:5WRQ|rcsb pdb:5WRY|rcsb pdb:5WRZ|rcsb pdb:5WS0|rcsb pdb:5WS1|rcsb pdb:5WTC|rcsb pdb:4ZZZ|rcsb pdb:5XSR|rcsb pdb:5XST|rcsb pdb:5XSU|rcsb pdb:6BHV|rcsb pdb:6GHK|rcsb pdb:6M3I|rcsb pdb:6NRF|rcsb pdb:6NRG|rcsb pdb:6NRH|rcsb pdb:6NRI|dip:DIP-38N	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:VC+4HLilGJuoiTbk4/fSeRw9+iY9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9NTX7	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P62979	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-357375|ensembl:ENSP00000272317|ensembl:ENSP00000383981|ensembl:ENSP00000385659|uniprotkb:P14798|uniprotkb:Q6LBL4|uniprotkb:Q9BQ77|uniprotkb:P02248|uniprotkb:P02249|uniprotkb:P02250|uniprotkb:P62988|uniprotkb:Q29120|uniprotkb:Q6LDU5|uniprotkb:Q8WYN8|uniprotkb:Q91887|uniprotkb:Q91888|uniprotkb:Q9BWD6|uniprotkb:Q9BX98|uniprotkb:Q9UEF2|uniprotkb:Q9UEG1|uniprotkb:Q9UEK8|uniprotkb:Q9UPK7	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:rs27a_human(display_long)|uniprotkb:RPS27A(gene name)|psi-mi:RPS27A(display_short)|uniprotkb:UBA80(gene name synonym)|uniprotkb:UBCEP1(gene name synonym)|uniprotkb:Ubiquitin carboxyl extension protein 80(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117264|imex:IM-27448-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	reactome:R-HSA-8856825|reactome:R-HSA-8856828|reactome:R-HSA-8863795|reactome:R-HSA-8866652|reactome:R-HSA-8866654|reactome:R-HSA-8875360|reactome:R-HSA-8876493|reactome:R-HSA-8932339|reactome:R-HSA-8939236|reactome:R-HSA-8939902|reactome:R-HSA-8941858|reactome:R-HSA-8948747|reactome:R-HSA-8948751|reactome:R-HSA-8854050|reactome:R-HSA-8951664|reactome:R-HSA-901032|reactome:R-HSA-9010553|reactome:R-HSA-9013507|reactome:R-HSA-9013973|reactome:R-HSA-9014325|reactome:R-HSA-9020702|reactome:R-HSA-9033241|reactome:R-HSA-912631|reactome:R-HSA-917729|reactome:R-HSA-917937|reactome:R-HSA-936440|reactome:R-HSA-936964|reactome:R-HSA-937039|reactome:R-HSA-937041|reactome:R-HSA-937042|reactome:R-HSA-937072|reactome:R-HSA-9604323|reactome:R-HSA-9613829|reactome:R-HSA-9615710|reactome:R-HSA-9633012|reactome:R-HSA-9636383|reactome:R-HSA-9637628|reactome:R-HSA-9645460|reactome:R-HSA-9646399|reactome:R-HSA-9648002|reactome:R-HSA-9664873|reactome:R-HSA-9683683|reactome:R-HSA-9694493|reactome:R-HSA-9705462|reactome:R-HSA-9706369|reactome:R-HSA-9706377|reactome:R-HSA-9708530|reactome:R-HSA-975110|reactome:R-HSA-975163|reactome:R-HSA-975956|reactome:R-HSA-975957|reactome:R-HSA-977225|reactome:R-HSA-983168|reactome:R-HSA-975144|ensembl:ENSG00000143947(gene)|ensembl:ENST00000272317(transcript)|ensembl:ENST00000402285(transcript)|ensembl:ENST00000404735(transcript)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005615"(extracellular space)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005741"(mitochondrial outer membrane)|go:"GO:0005789"(endoplasmic reticulum membrane)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0016020"(membrane)|go:"GO:0016567"(protein ubiquitination)|go:"GO:0019941"(modification-dependent protein catabolic process)|go:"GO:0022626"(cytosolic ribosome)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0010008"(endosome membrane)|go:"GO:0030666"(endocytic vesicle membrane)|go:"GO:0031386"(protein tag)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0031982"(vesicle)|go:"GO:0046872"(metal ion binding)|go:"GO:0070062"(extracellular exosome)|interpro:IPR000626(Ubiquitin)|interpro:IPR002906(Ribosomal protein S27a)|interpro:IPR011332(Ribosomal protein, zinc-binding)|interpro:IPR019954|interpro:IPR019956|interpro:IPR029071|interpro:IPR038582|mint:P62979|rcsb pdb:2KHW|rcsb pdb:2KOX|rcsb pdb:2KTF|rcsb pdb:2KWU|rcsb pdb:2KWV|rcsb pdb:2L0F|rcsb pdb:2L0T|rcsb pdb:2XK5|rcsb pdb:3AXC|rcsb pdb:3I3T|rcsb pdb:3K9P|rcsb pdb:3N30|rcsb pdb:3N32|rcsb pdb:3NHE|rcsb pdb:3NOB|rcsb pdb:3NS8|rcsb pdb:3PHD|rcsb pdb:3PHW|rcsb pdb:3TBL|rcsb pdb:3VDZ|rcsb pdb:4R62|rcsb pdb:6EK0|rcsb pdb:6FEC|rcsb pdb:4UG0|rcsb pdb:4V6X|rcsb pdb:6G18|rcsb pdb:6G51|rcsb pdb:6G53|rcsb pdb:6G5H|rcsb pdb:5A2Q|rcsb pdb:6G5I|rcsb pdb:6IP5|rcsb pdb:6IP6|rcsb pdb:5AJ0|rcsb pdb:6IP8|rcsb pdb:6J99|rcsb pdb:5FLX|rcsb pdb:6KFP|rcsb pdb:5LKS|rcsb pdb:6KG6|rcsb pdb:6KIU|rcsb pdb:6KIV|rcsb pdb:6KIW|rcsb pdb:6OLE|rcsb pdb:6OLF|rcsb pdb:6OLG|rcsb pdb:6OLI|rcsb pdb:6OLZ|rcsb pdb:6OM0|rcsb pdb:6OM7|rcsb pdb:6QZP|rcsb pdb:6SQO|rcsb pdb:5T2C|rcsb pdb:5WVO|rcsb pdb:6SQR|rcsb pdb:6SQS|rcsb pdb:6XA1|rcsb pdb:6Y0G|rcsb pdb:5YDK|rcsb pdb:6Y57|rcsb pdb:6YBS|rcsb pdb:6Z6L|rcsb pdb:6Z6M|rcsb pdb:6Z6N|rcsb pdb:6ZLW|rcsb pdb:6ZM7|rcsb pdb:6ZME|rcsb pdb:6ZMI|rcsb pdb:6ZMO|rcsb pdb:6ZMT|rcsb pdb:6ZMW|rcsb pdb:6ZN5|rcsb pdb:6ZOJ|rcsb pdb:6ZOL|rcsb pdb:6ZON|rcsb pdb:6ZP4|rcsb pdb:6ZUO|rcsb pdb:6DC6|rcsb pdb:6ZV6|rcsb pdb:6ZVH|rcsb pdb:6ZVJ|rcsb pdb:6ZXD|rcsb pdb:6ZXE|rcsb pdb:7K5I|reactome:R-HSA-110312|reactome:R-HSA-110314|reactome:R-HSA-110320|reactome:R-HSA-1169091|reactome:R-HSA-1169408|reactome:R-HSA-1234176|reactome:R-HSA-1236382|reactome:R-HSA-1236974|reactome:R-HSA-1253288|reactome:R-HSA-1295596|reactome:R-HSA-1358803|reactome:R-HSA-156827|reactome:R-HSA-156902|rcsb pdb:6ZXF|reactome:R-HSA-162588|reactome:R-HSA-168638|reactome:R-HSA-168927|reactome:R-HSA-168928|rcsb pdb:6ZXG|reactome:R-HSA-174048|reactome:R-HSA-174084|reactome:R-HSA-174113|reactome:R-HSA-174154|reactome:R-HSA-174178|reactome:R-HSA-174184|rcsb pdb:6ZXH|reactome:R-HSA-174490|reactome:R-HSA-175474|reactome:R-HSA-179409|reactome:R-HSA-1799339|reactome:R-HSA-180534|reactome:R-HSA-180585|reactome:R-HSA-182971|reactome:R-HSA-187577|rcsb pdb:7A09|rcsb pdb:7BWD|reactome:R-HSA-192823|reactome:R-HSA-195253|reactome:R-HSA-201681|reactome:R-HSA-2565942|reactome:R-HSA-202424|reactome:R-HSA-205043|reactome:R-HSA-2644606|reactome:R-HSA-2672351|reactome:R-HSA-209543|reactome:R-HSA-209560|reactome:R-HSA-2691232|reactome:R-HSA-2871837|reactome:R-HSA-2894862|reactome:R-HSA-2979096|reactome:R-HSA-3134975|reactome:R-HSA-3322077|reactome:R-HSA-349425|reactome:R-HSA-211733|reactome:R-HSA-3769402|reactome:R-HSA-3785653|reactome:R-HSA-382556|reactome:R-HSA-400253|reactome:R-HSA-445989|reactome:R-HSA-450302|reactome:R-HSA-450321|reactome:R-HSA-450408|reactome:R-HSA-2122947|reactome:R-HSA-4608870|reactome:R-HSA-4641257|reactome:R-HSA-2122948|reactome:R-HSA-4641258|reactome:R-HSA-2173788|reactome:R-HSA-4641263|reactome:R-HSA-5205685|reactome:R-HSA-532668|reactome:R-HSA-2173791|reactome:R-HSA-5357905|reactome:R-HSA-2173795|reactome:R-HSA-2173796|reactome:R-HSA-2408557|reactome:R-HSA-2467813|reactome:R-HSA-5357956|reactome:R-HSA-5358346|reactome:R-HSA-2559580|reactome:R-HSA-2559582|reactome:R-HSA-5362768|reactome:R-HSA-5607761|reactome:R-HSA-2559585|reactome:R-HSA-5607764|reactome:R-HSA-5610780|reactome:R-HSA-5610783|reactome:R-HSA-5610785|reactome:R-HSA-5632684|reactome:R-HSA-5654726|reactome:R-HSA-5654727|reactome:R-HSA-5654732|reactome:R-HSA-5654733|reactome:R-HSA-5655862|reactome:R-HSA-5656169|reactome:R-HSA-5656121|reactome:R-HSA-5658442|reactome:R-HSA-5668541|reactome:R-HSA-5675221|reactome:R-HSA-5675482|reactome:R-HSA-5676590|reactome:R-HSA-5678895|reactome:R-HSA-5684264|reactome:R-HSA-5685942|reactome:R-HSA-5687128|reactome:R-HSA-5689603|reactome:R-HSA-5689877|reactome:R-HSA-5689880|reactome:R-HSA-5689896|reactome:R-HSA-5689901|reactome:R-HSA-5693565|reactome:R-HSA-5693607|reactome:R-HSA-5696394|reactome:R-HSA-5696395|reactome:R-HSA-5696397|reactome:R-HSA-5696400|reactome:R-HSA-6781823|reactome:R-HSA-6781827|reactome:R-HSA-6782135|reactome:R-HSA-6782210|reactome:R-HSA-6783310|reactome:R-HSA-6791226|reactome:R-HSA-6804756|reactome:R-HSA-6804757|reactome:R-HSA-6804760|reactome:R-HSA-6807004|reactome:R-HSA-68827|reactome:R-HSA-68949|reactome:R-HSA-69017|reactome:R-HSA-69231|reactome:R-HSA-69481|reactome:R-HSA-69541|reactome:R-HSA-69601|reactome:R-HSA-72649|reactome:R-HSA-72689|reactome:R-HSA-72695|reactome:R-HSA-72702|reactome:R-HSA-72706|reactome:R-HSA-72764|reactome:R-HSA-75815|reactome:R-HSA-8849469|reactome:R-HSA-8852276|refseq:NP_001129064.1|refseq:NP_001170884.1|refseq:NP_002945.1	-	-	-	figure legend:fig. 5c, 5d|comment:"s a complimentary approach to identify RNF146 interacting proteins, we expressed in HEK293 cells RNF146 wildtype and ΔRING proteins, as well the control E3 ligase HECTD1, and immunoprecipitated these HA-tagged proteins from cell lysates. Mass spectrometric identification of proteins in all Coomassie-stained electrophoretic gel bands (Figure 5C) yielded TNKS1, TNKS2, PARP1, and PARP2 among the most prevalent proteins captured by RNF146ΔRING but not HECTD1, in addition to 11 other proteins known to bind PARP1/2 or function in DNA damage response (Figure 5D). Most of these protein interactors were also captured by wildtype RNF146 protein, although typically identified by fewer total peptides, suggesting that ubiquitylation by active RNF146 may release interactors from a complex. In contrast, specific interacting proteins that were identified by more peptides after capture by wildtype rather than ΔRING RNF146 include ubiquitin and the HECT-type ubiquitin E3 ligase HUWE1."|comment:RNF146 missing RING domain|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:2LSJafy6vjKHYZcZVx8zZaOXRis9606	rigid:ME5waL1hDdElVhwhYqtHlV2SOQU	false	ha tag:?-?|binding-associated region:83-359	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9ULT8	uniprotkb:P09874	intact:EBI-310559|uniprotkb:Q6P445|uniprotkb:Q86VJ1|uniprotkb:Q96F34|uniprotkb:Q9UFZ7|uniprotkb:D3DS86|ensembl:ENSP00000382269|ensembl:ENSP00000450697	intact:EBI-355676|uniprotkb:Q8IUZ9|uniprotkb:B1ANJ4|ensembl:ENSP00000355759	psi-mi:hecd1_human(display_long)|uniprotkb:HECTD1(gene name)|psi-mi:HECTD1(display_short)|uniprotkb:KIAA1131(gene name synonym)|uniprotkb:HECT domain-containing protein 1(gene name synonym)|uniprotkb:E3 ligase for inhibin receptor(gene name synonym)|uniprotkb:EULIR(gene name synonym)|uniprotkb:HECT-type E3 ubiquitin transferase HECTD1(gene name synonym)	psi-mi:parp1_human(display_long)|uniprotkb:PARP1(gene name)|psi-mi:PARP1(display_short)|uniprotkb:ADPRT(gene name synonym)|uniprotkb:PPOL(gene name synonym)|uniprotkb:"NAD(+) ADP-ribosyltransferase 1"(gene name synonym)|uniprotkb:Poly[ADP-ribose] synthase 1(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 1(gene name synonym)|uniprotkb:DNA ADP-ribosyltransferase PARP1(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase PARP1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22224338|imex:IM-27448-9	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensembl:ENSG00000092148(gene)|ensembl:ENST00000399332(transcript)|ensembl:ENST00000553700(transcript)|go:"GO:0001779"(natural killer cell differentiation)|go:"GO:0001843"(neural tube closure)|go:"GO:0003170"(heart valve development)|go:"GO:0003281"(ventricular septum development)|go:"GO:0032436"(positive regulation of proteasomal ubiquitin-dependent protein catabolic process)|go:"GO:0035904"(aorta development)|go:"GO:0046872"(metal ion binding)|go:"GO:0048856"(anatomical structure development)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0060707"(trophoblast giant cell differentiation)|go:"GO:0060708"(spongiotrophoblast differentiation)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070534"(protein K63-linked ubiquitination)|go:"GO:1903077"(negative regulation of protein localization to plasma membrane)|interpro:IPR000569(HECT)|interpro:IPR002110(Ankyrin)|interpro:IPR008979(Galactose-binding like)|interpro:IPR010606(Mib-herc2)|interpro:IPR011989(Armadillo-like helical)|interpro:IPR012919(Sad1/UNC-like, C-terminal)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR020683|interpro:IPR035983|interpro:IPR036770|interpro:IPR037252|interpro:IPR041200|mint:Q9ULT8|rcsb pdb:2DK3|rcsb pdb:3DKM|reactome:R-HSA-983168|rcsb pdb:2LC3|refseq:XP_005267559.2|ensembl:ENSP00000382269|ensembl:ENSP00000450697|refseq:NP_056197.3|dip:DIP-31669N	refseq:NP_001609.2|rcsb pdb:7AAC|rcsb pdb:7AAD|rcsb pdb:6NRJ|rcsb pdb:6NTU|rcsb pdb:7CMW|rcsb pdb:6VKK|rcsb pdb:7KK2|rcsb pdb:7KK3|rcsb pdb:7KK4|rcsb pdb:7KK5|rcsb pdb:7KK6|reactome:R-HSA-110362|reactome:R-HSA-192814|reactome:R-HSA-2173795|reactome:R-HSA-3108214|reactome:R-HSA-5685939|reactome:R-HSA-5696394|reactome:R-HSA-5696395|reactome:R-HSA-5696400|rcsb pdb:6VKO|rcsb pdb:6VKQ|rcsb pdb:6XVW|rcsb pdb:7AAA|rcsb pdb:7AAB|ensembl:ENSG00000143799(gene)|ensembl:ENST00000366794(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005635"(nuclear envelope)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005667"(transcription regulator complex)|go:"GO:0005730"(nucleolus)|go:"GO:0005739"(mitochondrion)|go:"GO:0006281"(DNA repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0006915"(apoptotic process)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007005"(mitochondrion organization)|go:"GO:0007179"(transforming growth factor beta receptor signaling pathway)|go:"GO:0008134"(transcription factor binding)|go:"GO:0010332"(response to gamma radiation)|go:"GO:0010613"(positive regulation of cardiac muscle hypertrophy)|go:"GO:0010990"(regulation of SMAD protein complex assembly)|go:"GO:0016020"(membrane)|go:"GO:0016540"(protein autoprocessing)|go:"GO:0016604"(nuclear body)|go:"GO:0018312"(peptidyl-serine ADP-ribosylation)|go:"GO:0018424"(peptidyl-glutamic acid poly-ADP-ribosylation)|go:"GO:0019899"(enzyme binding)|go:"GO:0019901"(protein kinase binding)|go:"GO:0023019"(signal transduction involved in regulation of gene expression)|go:"GO:0030225"(macrophage differentiation)|go:"GO:0030331"(estrogen receptor binding)|go:"GO:0030592"(DNA ADP-ribosylation)|go:"GO:0032042"(mitochondrial DNA metabolic process)|go:"GO:0032869"(cellular response to insulin stimulus)|go:"GO:0032991"(protein-containing complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0035861"(site of double-strand break)|go:"GO:0036211"(protein modification process)|go:"GO:0042769"(obsolete DNA damage response, detection of DNA damage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042826"(histone deacetylase binding)|go:"GO:0043504"(mitochondrial DNA repair)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0047485"(protein N-terminus binding)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:0051287"(NAD binding)|go:"GO:0051901"(positive regulation of mitochondrial depolarization)|go:"GO:0060391"(positive regulation of SMAD protein signal transduction)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0033148"(positive regulation of intracellular estrogen receptor signaling pathway)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0034599"(cellular response to oxidative stress)|go:"GO:0070412"(R-SMAD binding)|go:"GO:0034644"(cellular response to UV)|go:"GO:0071294"(cellular response to zinc ion)|go:"GO:0090734"(site of DNA damage)|go:"GO:0140294"(NAD DNA ADP-ribosyltransferase activity)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1901216"(positive regulation of neuron death)|go:"GO:1903376"(regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway)|go:"GO:1903518"(positive regulation of single strand break repair)|go:"GO:1904044"(response to aldosterone)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1904646"(cellular response to amyloid-beta)|go:"GO:1904762"(positive regulation of myofibroblast differentiation)|go:"GO:1905168"(positive regulation of double-strand break repair via homologous recombination)|go:"GO:1990404"(protein ADP-ribosylase activity)|go:"GO:1990966"(ATP generation from poly-ADP-D-ribose)|go:"GO:2000679"(positive regulation of transcription regulatory region DNA binding)|go:"GO:2001170"(negative regulation of ATP biosynthetic process)|interpro:IPR001357(BRCT)|interpro:IPR001510(Zinc finger, PARP-type)|interpro:IPR004102("Poly(ADP-ribose) polymerase, regulatory region")|interpro:IPR008288(NAD+ ADP-ribosyltransferase)|interpro:IPR008893(WGR)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR012982(PADR1)|interpro:IPR036420|interpro:IPR036616|interpro:IPR036930|interpro:IPR036957|interpro:IPR038650|mint:P09874|rcsb pdb:1UK0|rcsb pdb:1UK1|rcsb pdb:1WOK|rcsb pdb:2COK|rcsb pdb:2CR9|rcsb pdb:2CS2|rcsb pdb:2DMJ|rcsb pdb:2JVN|go:"GO:1903827"|rcsb pdb:2L30|rcsb pdb:2N8A|rcsb pdb:2RCW|rcsb pdb:2RD6|rcsb pdb:2RIQ|rcsb pdb:2L31|rcsb pdb:3GJW|rcsb pdb:3GN7|rcsb pdb:3L3L|rcsb pdb:3L3M|rcsb pdb:3OD8|rcsb pdb:3ODA|rcsb pdb:3ODC|rcsb pdb:3ODE|rcsb pdb:4AV1|rcsb pdb:4DQY|rcsb pdb:4GV7|rcsb pdb:4HHY|rcsb pdb:4HHZ|rcsb pdb:4L6S|rcsb pdb:4OPX|rcsb pdb:4OQA|rcsb pdb:4OQB|rcsb pdb:4PJT|rcsb pdb:4R5W|rcsb pdb:4R6E|rcsb pdb:4RV6|rcsb pdb:4UND|rcsb pdb:4UXB|rcsb pdb:4XHU|rcsb pdb:5A00|rcsb pdb:5DS3|rcsb pdb:5HA9|rcsb pdb:5KPN|rcsb pdb:5KPO|rcsb pdb:5KPP|rcsb pdb:5KPQ|rcsb pdb:5WRQ|rcsb pdb:5WRY|rcsb pdb:5WRZ|rcsb pdb:5WS0|rcsb pdb:5WS1|rcsb pdb:5WTC|rcsb pdb:4ZZZ|rcsb pdb:5XSR|rcsb pdb:5XST|rcsb pdb:5XSU|rcsb pdb:6BHV|rcsb pdb:6GHK|rcsb pdb:6M3I|rcsb pdb:6NRF|rcsb pdb:6NRG|rcsb pdb:6NRH|rcsb pdb:6NRI|dip:DIP-38N	-	-	-	figure legend:fig 5c, 5d|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:/l60ZSm+P4Vlc8B79wS7+T1Zvzk9606	rogid:VC+4HLilGJuoiTbk4/fSeRw9+iY9606	rigid:74YIsHuFjOCxZapLJ+TSzbLwaLw	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9ULT8	uniprotkb:P41252	intact:EBI-310559|uniprotkb:Q6P445|uniprotkb:Q86VJ1|uniprotkb:Q96F34|uniprotkb:Q9UFZ7|uniprotkb:D3DS86|ensembl:ENSP00000382269|ensembl:ENSP00000450697	intact:EBI-355303|uniprotkb:Q5TCD0|uniprotkb:Q9H588|uniprotkb:A8KAE9|uniprotkb:Q7Z3T4|ensembl:ENSP00000364794|ensembl:ENSP00000406448|ensembl:ENSP00000507144	psi-mi:hecd1_human(display_long)|uniprotkb:HECTD1(gene name)|psi-mi:HECTD1(display_short)|uniprotkb:KIAA1131(gene name synonym)|uniprotkb:HECT domain-containing protein 1(gene name synonym)|uniprotkb:E3 ligase for inhibin receptor(gene name synonym)|uniprotkb:EULIR(gene name synonym)|uniprotkb:HECT-type E3 ubiquitin transferase HECTD1(gene name synonym)	psi-mi:syic_human(display_long)|uniprotkb:IARS1(gene name)|psi-mi:IARS1(display_short)|uniprotkb:IARS(gene name synonym)|uniprotkb:Isoleucyl-tRNA synthetase(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22224338|imex:IM-27448-9	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensembl:ENSG00000092148(gene)|ensembl:ENST00000399332(transcript)|ensembl:ENST00000553700(transcript)|go:"GO:0001779"(natural killer cell differentiation)|go:"GO:0001843"(neural tube closure)|go:"GO:0003170"(heart valve development)|go:"GO:0003281"(ventricular septum development)|go:"GO:0032436"(positive regulation of proteasomal ubiquitin-dependent protein catabolic process)|go:"GO:0035904"(aorta development)|go:"GO:0046872"(metal ion binding)|go:"GO:0048856"(anatomical structure development)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0060707"(trophoblast giant cell differentiation)|go:"GO:0060708"(spongiotrophoblast differentiation)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070534"(protein K63-linked ubiquitination)|go:"GO:1903077"(negative regulation of protein localization to plasma membrane)|interpro:IPR000569(HECT)|interpro:IPR002110(Ankyrin)|interpro:IPR008979(Galactose-binding like)|interpro:IPR010606(Mib-herc2)|interpro:IPR011989(Armadillo-like helical)|interpro:IPR012919(Sad1/UNC-like, C-terminal)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR020683|interpro:IPR035983|interpro:IPR036770|interpro:IPR037252|interpro:IPR041200|mint:Q9ULT8|rcsb pdb:2DK3|rcsb pdb:3DKM|reactome:R-HSA-983168|rcsb pdb:2LC3|refseq:XP_005267559.2|ensembl:ENSP00000382269|ensembl:ENSP00000450697|refseq:NP_056197.3|dip:DIP-31669N	refseq:NP_002152.2|refseq:NP_038203.2|ensembl:ENSG00000196305(gene)|ensembl:ENST00000375643(transcript)|ensembl:ENST00000443024(transcript)|ensembl:ENST00000683565(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0001649"(osteoblast differentiation)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004822"(isoleucine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006418"(tRNA aminoacylation for protein translation)|go:"GO:0006428"(isoleucyl-tRNA aminoacylation)|go:"GO:0016020"(membrane)|go:"GO:0017101"(aminoacyl-tRNA synthetase multienzyme complex)|go:"GO:0051020"(GTPase binding)|go:"GO:0070062"(extracellular exosome)|interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR002300(Aminoacyl-tRNA synthetase, class Ia)|interpro:IPR002301(Isoleucyl-tRNA synthetase, class Ia)|interpro:IPR009008(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR013155(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR023586|interpro:IPR033709|mint:P41252|reactome:R-HSA-2408522|reactome:R-HSA-379716	-	-	-	figure legend:fig 5c, 5d|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:/l60ZSm+P4Vlc8B79wS7+T1Zvzk9606	rogid:maAJX/O1Ryxr5NVFQEWvXNgHXyY9606	rigid:74YIsHuFjOCxZapLJ+TSzbLwaLw	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9ULT8	uniprotkb:Q9H6R7	intact:EBI-310559|uniprotkb:Q6P445|uniprotkb:Q86VJ1|uniprotkb:Q96F34|uniprotkb:Q9UFZ7|uniprotkb:D3DS86|ensembl:ENSP00000382269|ensembl:ENSP00000450697	intact:EBI-346906|uniprotkb:D6W532|uniprotkb:Q8IYK0|uniprotkb:Q9HBP5|ensembl:ENSP00000295148	psi-mi:hecd1_human(display_long)|uniprotkb:HECTD1(gene name)|psi-mi:HECTD1(display_short)|uniprotkb:KIAA1131(gene name synonym)|uniprotkb:HECT domain-containing protein 1(gene name synonym)|uniprotkb:E3 ligase for inhibin receptor(gene name synonym)|uniprotkb:EULIR(gene name synonym)|uniprotkb:HECT-type E3 ubiquitin transferase HECTD1(gene name synonym)	psi-mi:wdcp_human(display_long)|uniprotkb:WDCP(gene name)|psi-mi:WDCP(display_short)|uniprotkb:C2orf44(gene name synonym)|uniprotkb:PP384(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22224338|imex:IM-27448-9	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensembl:ENSG00000092148(gene)|ensembl:ENST00000399332(transcript)|ensembl:ENST00000553700(transcript)|go:"GO:0001779"(natural killer cell differentiation)|go:"GO:0001843"(neural tube closure)|go:"GO:0003170"(heart valve development)|go:"GO:0003281"(ventricular septum development)|go:"GO:0032436"(positive regulation of proteasomal ubiquitin-dependent protein catabolic process)|go:"GO:0035904"(aorta development)|go:"GO:0046872"(metal ion binding)|go:"GO:0048856"(anatomical structure development)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0060707"(trophoblast giant cell differentiation)|go:"GO:0060708"(spongiotrophoblast differentiation)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070534"(protein K63-linked ubiquitination)|go:"GO:1903077"(negative regulation of protein localization to plasma membrane)|interpro:IPR000569(HECT)|interpro:IPR002110(Ankyrin)|interpro:IPR008979(Galactose-binding like)|interpro:IPR010606(Mib-herc2)|interpro:IPR011989(Armadillo-like helical)|interpro:IPR012919(Sad1/UNC-like, C-terminal)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR020683|interpro:IPR035983|interpro:IPR036770|interpro:IPR037252|interpro:IPR041200|mint:Q9ULT8|rcsb pdb:2DK3|rcsb pdb:3DKM|reactome:R-HSA-983168|rcsb pdb:2LC3|refseq:XP_005267559.2|ensembl:ENSP00000382269|ensembl:ENSP00000450697|refseq:NP_056197.3|dip:DIP-31669N	refseq:NP_001135791.1|refseq:NP_079479.1|ensembl:ENSG00000163026(gene)|ensembl:ENST00000295148(transcript)|go:"GO:0019900"(kinase binding)|go:"GO:0051259"(protein complex oligomerization)|interpro:IPR028041|mint:Q9H6R7	-	-	-	figure legend:fig 5c, 5d|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:/l60ZSm+P4Vlc8B79wS7+T1Zvzk9606	rogid:qT8Zfifj+1U5HvWjtXjKTiVj1OA9606	rigid:74YIsHuFjOCxZapLJ+TSzbLwaLw	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9ULT8	uniprotkb:Q5SVZ6	intact:EBI-310559|uniprotkb:Q6P445|uniprotkb:Q86VJ1|uniprotkb:Q96F34|uniprotkb:Q9UFZ7|uniprotkb:D3DS86|ensembl:ENSP00000382269|ensembl:ENSP00000450697	intact:EBI-2555834|uniprotkb:Q7Z3Q4|ensembl:ENSP00000352920|ensembl:ENSP00000362427|ensembl:ENSP00000482579|ensembl:ENSP00000496876|uniprotkb:D3DPR7	psi-mi:hecd1_human(display_long)|uniprotkb:HECTD1(gene name)|psi-mi:HECTD1(display_short)|uniprotkb:KIAA1131(gene name synonym)|uniprotkb:HECT domain-containing protein 1(gene name synonym)|uniprotkb:E3 ligase for inhibin receptor(gene name synonym)|uniprotkb:EULIR(gene name synonym)|uniprotkb:HECT-type E3 ubiquitin transferase HECTD1(gene name synonym)	psi-mi:zmym1_human(display_long)|uniprotkb:ZMYM1(gene name)|psi-mi:ZMYM1(display_short)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22224338|imex:IM-27448-9	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensembl:ENSG00000092148(gene)|ensembl:ENST00000399332(transcript)|ensembl:ENST00000553700(transcript)|go:"GO:0001779"(natural killer cell differentiation)|go:"GO:0001843"(neural tube closure)|go:"GO:0003170"(heart valve development)|go:"GO:0003281"(ventricular septum development)|go:"GO:0032436"(positive regulation of proteasomal ubiquitin-dependent protein catabolic process)|go:"GO:0035904"(aorta development)|go:"GO:0046872"(metal ion binding)|go:"GO:0048856"(anatomical structure development)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0060707"(trophoblast giant cell differentiation)|go:"GO:0060708"(spongiotrophoblast differentiation)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070534"(protein K63-linked ubiquitination)|go:"GO:1903077"(negative regulation of protein localization to plasma membrane)|interpro:IPR000569(HECT)|interpro:IPR002110(Ankyrin)|interpro:IPR008979(Galactose-binding like)|interpro:IPR010606(Mib-herc2)|interpro:IPR011989(Armadillo-like helical)|interpro:IPR012919(Sad1/UNC-like, C-terminal)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR020683|interpro:IPR035983|interpro:IPR036770|interpro:IPR037252|interpro:IPR041200|mint:Q9ULT8|rcsb pdb:2DK3|rcsb pdb:3DKM|reactome:R-HSA-983168|rcsb pdb:2LC3|refseq:XP_005267559.2|ensembl:ENSP00000382269|ensembl:ENSP00000450697|refseq:NP_056197.3|dip:DIP-31669N	refseq:NP_079048.3|ensembl:ENSG00000197056(gene)|ensembl:ENST00000359858(transcript)|ensembl:ENST00000373330(transcript)|ensembl:ENST00000611874(transcript)|ensembl:ENST00000650449(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0008270"(zinc ion binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR008906(HAT dimerisation)|interpro:IPR010507(Zinc finger, MYM-type)|interpro:IPR011017(TRASH)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR025398|mint:Q5SVZ6|refseq:NP_001306884.1|ensembl:ENSP00000352920|ensembl:ENSP00000362427|ensembl:ENSP00000482579|ensembl:ENSP00000496876|refseq:NP_001276017.1|refseq:NP_001276018.1|refseq:NP_001276019.1	-	-	-	figure legend:fig 5c, 5d|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:/l60ZSm+P4Vlc8B79wS7+T1Zvzk9606	rogid:Mi/JhPhavQr3W2r/4xHAGfYjMWE9606	rigid:74YIsHuFjOCxZapLJ+TSzbLwaLw	false	ha tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7-2	uniprotkb:Q9H2K2	intact:EBI-11750630|ensembl:ENSP00000477168	intact:EBI-4398527|uniprotkb:Q9H8F2|uniprotkb:Q9HAS4|uniprotkb:B2RBD3|ensembl:ENSP00000360689	psi-mi:q9ntx7-2(display_long)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)	psi-mi:tnks2_human(display_long)|uniprotkb:TNKS2(gene name)|psi-mi:TNKS2(display_short)|uniprotkb:PARP5B(gene name synonym)|uniprotkb:TANK2(gene name synonym)|uniprotkb:TNKL(gene name synonym)|uniprotkb:Poly [ADP-ribose] polymerase 5B(gene name synonym)|uniprotkb:TNKS-2(gene name synonym)|uniprotkb:TRF1-interacting ankyrin-related ADP-ribose polymerase 2(gene name synonym)|uniprotkb:Tankyrase II(gene name synonym)|uniprotkb:Tankyrase-like protein(gene name synonym)|uniprotkb:Tankyrase-related protein(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 6(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase tankyrase-2(gene name synonym)|uniprotkb:Tankyrase-2(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117309|imex:IM-27448-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	uniprotkb:Q9NTX7-2(isoform-parent)|intact:EBI-722397(isoform-parent)|ensembl:ENSG00000118518(gene)|ensembl:ENST00000608991(transcript)	refseq:NP_079511.1|dip:DIP-42098N|rcsb pdb:3P0Q|rcsb pdb:3TWQ|rcsb pdb:3TWR|rcsb pdb:3TWS|rcsb pdb:3TWT|rcsb pdb:3TWU|rcsb pdb:3TWV|rcsb pdb:3TWW|rcsb pdb:3TWX|rcsb pdb:3U9H|rcsb pdb:3U9Y|rcsb pdb:3UA9|rcsb pdb:3W51|rcsb pdb:4AVU|rcsb pdb:4AVW|rcsb pdb:4BFP|rcsb pdb:4BJ9|rcsb pdb:4BJB|rcsb pdb:4BJC|rcsb pdb:4BS4|rcsb pdb:4BU3|rcsb pdb:4BU5|rcsb pdb:4BU6|rcsb pdb:4BU7|rcsb pdb:4BU8|rcsb pdb:4BU9|rcsb pdb:4BUA|rcsb pdb:4BUD|rcsb pdb:4BUE|rcsb pdb:4BUF|rcsb pdb:4BUI|rcsb pdb:4BUS|rcsb pdb:4BUT|rcsb pdb:4BUU|rcsb pdb:4BUV|rcsb pdb:4BUW|rcsb pdb:4BUX|rcsb pdb:4BUY|rcsb pdb:4HKI|rcsb pdb:4HKK|rcsb pdb:4HKN|ensembl:ENSG00000107854(gene)|ensembl:ENST00000371627(transcript)|go:"GO:0000139"(Golgi membrane)|go:"GO:0000209"(protein polyubiquitination)|go:"GO:0000242"(pericentriolar material)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005635"(nuclear envelope)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0019899"(enzyme binding)|go:"GO:0032212"(positive regulation of telomere maintenance via telomerase)|go:"GO:0035264"(multicellular organism growth)|go:"GO:0040014"(regulation of multicellular organism growth)|go:"GO:0046872"(metal ion binding)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0070198"(protein localization to chromosome, telomeric region)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|go:"GO:1904355"(positive regulation of telomere capping)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1990404"(protein ADP-ribosylase activity)|interpro:IPR001660(Sterile alpha motif SAM)|interpro:IPR002110(Ankyrin)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR013761(Sterile alpha motif-type)|interpro:IPR020683|interpro:IPR036770|mint:Q9H2K2|rcsb pdb:2Y0I|rcsb pdb:3KR7|rcsb pdb:3KR8|rcsb pdb:3MHJ|rcsb pdb:3MHK|rcsb pdb:3P0N|rcsb pdb:3P0P|rcsb pdb:6TKP|rcsb pdb:6TKQ|rcsb pdb:6TKR|rcsb pdb:6TKS|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5545619|reactome:R-HSA-5689880|reactome:R-HSA-8948751|rcsb pdb:6TKN|rcsb pdb:4HL5|rcsb pdb:4HLF|rcsb pdb:4HLG|rcsb pdb:4HLH|rcsb pdb:4HLK|rcsb pdb:4HLM|rcsb pdb:4HMH|rcsb pdb:4HYF|rcsb pdb:4IUE|rcsb pdb:4J1Z|rcsb pdb:4J21|rcsb pdb:4J22|rcsb pdb:4J3L|rcsb pdb:4J3M|rcsb pdb:4KZL|rcsb pdb:4KZQ|rcsb pdb:4KZU|rcsb pdb:4L09|rcsb pdb:4L0B|rcsb pdb:4L0I|rcsb pdb:4L0T|rcsb pdb:4L0V|rcsb pdb:4L10|rcsb pdb:4L2F|rcsb pdb:4L2G|rcsb pdb:4L2K|rcsb pdb:4L31|rcsb pdb:4L32|rcsb pdb:4L33|rcsb pdb:4L34|rcsb pdb:4M7B|rcsb pdb:4PML|rcsb pdb:4PNL|rcsb pdb:4PNM|rcsb pdb:4PNN|rcsb pdb:4PNQ|rcsb pdb:4PNR|rcsb pdb:4PNS|rcsb pdb:4PNT|rcsb pdb:4TJU|rcsb pdb:4TJW|rcsb pdb:4TJY|rcsb pdb:4TK0|rcsb pdb:4TK5|rcsb pdb:4TKF|rcsb pdb:4TKG|rcsb pdb:4TKI|rcsb pdb:4UFU|rcsb pdb:4UFY|rcsb pdb:4UHG|rcsb pdb:4UI3|rcsb pdb:4UI4|rcsb pdb:4UI5|rcsb pdb:4UI6|rcsb pdb:4UI7|rcsb pdb:4UI8|rcsb pdb:4UVL|rcsb pdb:4UVN|rcsb pdb:4UVO|rcsb pdb:4UVP|rcsb pdb:4UVS|rcsb pdb:4UVT|rcsb pdb:4UVU|rcsb pdb:4UVV|rcsb pdb:4UVW|rcsb pdb:4UVX|rcsb pdb:4UVY|rcsb pdb:4UVZ|rcsb pdb:4UX4|rcsb pdb:4W5I|rcsb pdb:4Z68|rcsb pdb:5ADQ|rcsb pdb:5ADR|rcsb pdb:5ADS|rcsb pdb:5ADT|rcsb pdb:5AEH|rcsb pdb:5AKU|rcsb pdb:5AKW|rcsb pdb:5AL1|rcsb pdb:5AL2|rcsb pdb:5AL3|rcsb pdb:5AL4|rcsb pdb:5AL5|rcsb pdb:5BXO|rcsb pdb:5BXU|rcsb pdb:5C5P|rcsb pdb:4L0S|rcsb pdb:5C5Q|rcsb pdb:5C5R|rcsb pdb:5DCZ|rcsb pdb:5FPF|rcsb pdb:5FPG|rcsb pdb:5JRT|rcsb pdb:5NOB|rcsb pdb:5NSP|rcsb pdb:5NUT|rcsb pdb:5OWS|rcsb pdb:5OWT|rcsb pdb:6TG4|rcsb pdb:6TKM	-	-	-	figure legend:fig. 5e|comment:"We confirmed by Western analysis that RNF146 binds tankyrase by immunoprecipitating tagged RNF146 expressed in HEK293 cells (Figure 5E). Both wildtype and H53A mutant RNF146 proteins co-immunoprecipitate with endogenous TNKS1, apparently the predominant tankyrase in HEK293 cells, and with overexpressed TNKS2. Note that proteasome inhibitor ALLN weakly stabilizes TNKS2 and RNF146 when both are overexpressed."|variable_condition:treatment with proteasome inhibitor ALLN|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/10/25	rogid:jVxZQRKw7NMsmk2BcifK8OIwm8I9606	rogid:pf0mQR/in4ShtYc1xmCF042/v/A9606	rigid:8KdEX13xdsgxGDWo7/lHnRXzClw	false	v5 tag:?-?|mutation with no effect:53-53	ha tag:?-?	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:Q9NTX7-2	uniprotkb:O95271	intact:EBI-11750630|ensembl:ENSP00000477168	intact:EBI-1105254|uniprotkb:O95272|uniprotkb:Q4G0F2|intact:EBI-28985643|ensembl:ENSP00000311579	psi-mi:q9ntx7-2(display_long)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)	psi-mi:tnks1_human(display_long)|uniprotkb:TNKS(gene name)|psi-mi:TNKS(display_short)|uniprotkb:PARP5A(gene name synonym)|uniprotkb:PARPL(gene name synonym)|uniprotkb:TIN1(gene name synonym)|uniprotkb:TINF1(gene name synonym)|uniprotkb:TNKS1(gene name synonym)|uniprotkb:Tankyrase I(gene name synonym)|uniprotkb:TNKS-1(gene name synonym)|uniprotkb:TRF1-interacting ankyrin-related ADP-ribose polymerase(gene name synonym)|uniprotkb:Poly [ADP-ribose] polymerase 5A(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 5(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase tankyrase-1(gene name synonym)|uniprotkb:Tankyrase-1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117309|imex:IM-27448-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	uniprotkb:Q9NTX7-2(isoform-parent)|intact:EBI-722397(isoform-parent)|ensembl:ENSG00000118518(gene)|ensembl:ENST00000608991(transcript)	refseq:NP_003738.2|rcsb pdb:5JHQ|rcsb pdb:5JTI|rcsb pdb:5JU5|rcsb pdb:5KNI|rcsb pdb:6QXU|rcsb pdb:6URQ|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5545619|reactome:R-HSA-5689880|reactome:R-HSA-8948751|rcsb pdb:5GP7|ensembl:ENSP00000311579|ensembl:ENSG00000173273(gene)|ensembl:ENST00000310430(transcript)|go:"GO:0000139"(Golgi membrane)|go:"GO:0000209"(protein polyubiquitination)|go:"GO:0000242"(pericentriolar material)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005643"(nuclear pore)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005794"(Golgi apparatus)|go:"GO:0005829"(cytosol)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0007052"(mitotic spindle organization)|go:"GO:0008270"(zinc ion binding)|go:"GO:0015031"(protein transport)|go:"GO:0016604"(nuclear body)|go:"GO:0018105"(peptidyl-serine phosphorylation)|go:"GO:0018107"(peptidyl-threonine phosphorylation)|go:"GO:0031670"(cellular response to nutrient)|go:"GO:0031965"(nuclear membrane)|go:"GO:0032210"(regulation of telomere maintenance via telomerase)|go:"GO:0032212"(positive regulation of telomere maintenance via telomerase)|go:"GO:0042393"(histone binding)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0051028"(mRNA transport)|go:"GO:0051225"(spindle assembly)|go:"GO:0051301"(cell division)|go:"GO:0051973"(positive regulation of telomerase activity)|go:"GO:0070198"(protein localization to chromosome, telomeric region)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|go:"GO:0097431"(mitotic spindle pole)|go:"GO:1904355"(positive regulation of telomere capping)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1904743"(negative regulation of telomeric DNA binding)|go:"GO:1904908"(negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric)|go:"GO:1990404"(protein ADP-ribosylase activity)|interpro:IPR001660(Sterile alpha motif SAM)|interpro:IPR002110(Ankyrin)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR013761(Sterile alpha motif-type)|interpro:IPR020683|interpro:IPR028731|interpro:IPR036770|mint:O95271|rcsb pdb:2RF5|rcsb pdb:3UDD|rcsb pdb:3UH2|rcsb pdb:3UH4|rcsb pdb:4DVI|rcsb pdb:4I9I|go:"GO:0016055"(Wnt signaling pathway)|rcsb pdb:4K4F|rcsb pdb:4KRS|rcsb pdb:4LI6|rcsb pdb:4LI7|rcsb pdb:4LI8|rcsb pdb:4MSG|rcsb pdb:4MSK|rcsb pdb:4MT9|rcsb pdb:4N3R|rcsb pdb:4N4V|rcsb pdb:4OA7|rcsb pdb:4TOR|rcsb pdb:4TOS|rcsb pdb:4U6A|rcsb pdb:4UUH|rcsb pdb:4UW1|rcsb pdb:4K4E|rcsb pdb:4W5S|rcsb pdb:4W6E|rcsb pdb:5EBT|rcsb pdb:5ECE|rcsb pdb:5ETY|dip:DIP-36652N	-	-	-	figure legend:fig. 5e|comment:"We confirmed by Western analysis that RNF146 binds tankyrase by immunoprecipitating tagged RNF146 expressed in HEK293 cells (Figure 5E). Both wildtype and H53A mutant RNF146 proteins co-immunoprecipitate with endogenous TNKS1, apparently the predominant tankyrase in HEK293 cells, and with overexpressed TNKS2. Note that proteasome inhibitor ALLN weakly stabilizes TNKS2 and RNF146 when both are overexpressed."|variable_condition:treatment with proteasome inhibitor ALLN|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/10/25	rogid:jVxZQRKw7NMsmk2BcifK8OIwm8I9606	rogid:0WKEfg5OMAISQutoJb2w+hBfmOU9606	rigid:8KdEX13xdsgxGDWo7/lHnRXzClw	false	v5 tag:?-?|mutation with no effect:53-53	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:Q9NTX7	uniprotkb:P09874	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-355676|uniprotkb:Q8IUZ9|uniprotkb:B1ANJ4|ensembl:ENSP00000355759	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:parp1_human(display_long)|uniprotkb:PARP1(gene name)|psi-mi:PARP1(display_short)|uniprotkb:ADPRT(gene name synonym)|uniprotkb:PPOL(gene name synonym)|uniprotkb:"NAD(+) ADP-ribosyltransferase 1"(gene name synonym)|uniprotkb:Poly[ADP-ribose] synthase 1(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 1(gene name synonym)|uniprotkb:DNA ADP-ribosyltransferase PARP1(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase PARP1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22224297|imex:IM-27448-7	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001609.2|rcsb pdb:7AAC|rcsb pdb:7AAD|rcsb pdb:6NRJ|rcsb pdb:6NTU|rcsb pdb:7CMW|rcsb pdb:6VKK|rcsb pdb:7KK2|rcsb pdb:7KK3|rcsb pdb:7KK4|rcsb pdb:7KK5|rcsb pdb:7KK6|reactome:R-HSA-110362|reactome:R-HSA-192814|reactome:R-HSA-2173795|reactome:R-HSA-3108214|reactome:R-HSA-5685939|reactome:R-HSA-5696394|reactome:R-HSA-5696395|reactome:R-HSA-5696400|rcsb pdb:6VKO|rcsb pdb:6VKQ|rcsb pdb:6XVW|rcsb pdb:7AAA|rcsb pdb:7AAB|ensembl:ENSG00000143799(gene)|ensembl:ENST00000366794(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005635"(nuclear envelope)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005667"(transcription regulator complex)|go:"GO:0005730"(nucleolus)|go:"GO:0005739"(mitochondrion)|go:"GO:0006281"(DNA repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0006915"(apoptotic process)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007005"(mitochondrion organization)|go:"GO:0007179"(transforming growth factor beta receptor signaling pathway)|go:"GO:0008134"(transcription factor binding)|go:"GO:0010332"(response to gamma radiation)|go:"GO:0010613"(positive regulation of cardiac muscle hypertrophy)|go:"GO:0010990"(regulation of SMAD protein complex assembly)|go:"GO:0016020"(membrane)|go:"GO:0016540"(protein autoprocessing)|go:"GO:0016604"(nuclear body)|go:"GO:0018312"(peptidyl-serine ADP-ribosylation)|go:"GO:0018424"(peptidyl-glutamic acid poly-ADP-ribosylation)|go:"GO:0019899"(enzyme binding)|go:"GO:0019901"(protein kinase binding)|go:"GO:0023019"(signal transduction involved in regulation of gene expression)|go:"GO:0030225"(macrophage differentiation)|go:"GO:0030331"(estrogen receptor binding)|go:"GO:0030592"(DNA ADP-ribosylation)|go:"GO:0032042"(mitochondrial DNA metabolic process)|go:"GO:0032869"(cellular response to insulin stimulus)|go:"GO:0032991"(protein-containing complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0035861"(site of double-strand break)|go:"GO:0036211"(protein modification process)|go:"GO:0042769"(obsolete DNA damage response, detection of DNA damage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042826"(histone deacetylase binding)|go:"GO:0043504"(mitochondrial DNA repair)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0047485"(protein N-terminus binding)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:0051287"(NAD binding)|go:"GO:0051901"(positive regulation of mitochondrial depolarization)|go:"GO:0060391"(positive regulation of SMAD protein signal transduction)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0033148"(positive regulation of intracellular estrogen receptor signaling pathway)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0034599"(cellular response to oxidative stress)|go:"GO:0070412"(R-SMAD binding)|go:"GO:0034644"(cellular response to UV)|go:"GO:0071294"(cellular response to zinc ion)|go:"GO:0090734"(site of DNA damage)|go:"GO:0140294"(NAD DNA ADP-ribosyltransferase activity)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1901216"(positive regulation of neuron death)|go:"GO:1903376"(regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway)|go:"GO:1903518"(positive regulation of single strand break repair)|go:"GO:1904044"(response to aldosterone)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1904646"(cellular response to amyloid-beta)|go:"GO:1904762"(positive regulation of myofibroblast differentiation)|go:"GO:1905168"(positive regulation of double-strand break repair via homologous recombination)|go:"GO:1990404"(protein ADP-ribosylase activity)|go:"GO:1990966"(ATP generation from poly-ADP-D-ribose)|go:"GO:2000679"(positive regulation of transcription regulatory region DNA binding)|go:"GO:2001170"(negative regulation of ATP biosynthetic process)|interpro:IPR001357(BRCT)|interpro:IPR001510(Zinc finger, PARP-type)|interpro:IPR004102("Poly(ADP-ribose) polymerase, regulatory region")|interpro:IPR008288(NAD+ ADP-ribosyltransferase)|interpro:IPR008893(WGR)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR012982(PADR1)|interpro:IPR036420|interpro:IPR036616|interpro:IPR036930|interpro:IPR036957|interpro:IPR038650|mint:P09874|rcsb pdb:1UK0|rcsb pdb:1UK1|rcsb pdb:1WOK|rcsb pdb:2COK|rcsb pdb:2CR9|rcsb pdb:2CS2|rcsb pdb:2DMJ|rcsb pdb:2JVN|go:"GO:1903827"|rcsb pdb:2L30|rcsb pdb:2N8A|rcsb pdb:2RCW|rcsb pdb:2RD6|rcsb pdb:2RIQ|rcsb pdb:2L31|rcsb pdb:3GJW|rcsb pdb:3GN7|rcsb pdb:3L3L|rcsb pdb:3L3M|rcsb pdb:3OD8|rcsb pdb:3ODA|rcsb pdb:3ODC|rcsb pdb:3ODE|rcsb pdb:4AV1|rcsb pdb:4DQY|rcsb pdb:4GV7|rcsb pdb:4HHY|rcsb pdb:4HHZ|rcsb pdb:4L6S|rcsb pdb:4OPX|rcsb pdb:4OQA|rcsb pdb:4OQB|rcsb pdb:4PJT|rcsb pdb:4R5W|rcsb pdb:4R6E|rcsb pdb:4RV6|rcsb pdb:4UND|rcsb pdb:4UXB|rcsb pdb:4XHU|rcsb pdb:5A00|rcsb pdb:5DS3|rcsb pdb:5HA9|rcsb pdb:5KPN|rcsb pdb:5KPO|rcsb pdb:5KPP|rcsb pdb:5KPQ|rcsb pdb:5WRQ|rcsb pdb:5WRY|rcsb pdb:5WRZ|rcsb pdb:5WS0|rcsb pdb:5WS1|rcsb pdb:5WTC|rcsb pdb:4ZZZ|rcsb pdb:5XSR|rcsb pdb:5XST|rcsb pdb:5XSU|rcsb pdb:6BHV|rcsb pdb:6GHK|rcsb pdb:6M3I|rcsb pdb:6NRF|rcsb pdb:6NRG|rcsb pdb:6NRH|rcsb pdb:6NRI|dip:DIP-38N	-	-	-	figure legend:fig 6b|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:9606(human-293)|taxid:9606(Homo sapiens transformed primary embryonal kidney cells)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:VC+4HLilGJuoiTbk4/fSeRw9+iY9606	rigid:/X1YFqpY0ZRTK0TqENhbkwe1uJg	false	mutation with no effect:54-54	ha tag:?-?	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:Q9NTX7	uniprotkb:P46940	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-297509|ensembl:ENSP00000268182|uniprotkb:A7MBM3	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:iqga1_human(display_long)|uniprotkb:IQGAP1(gene name)|psi-mi:IQGAP1(display_short)|uniprotkb:KIAA0051(gene name synonym)|uniprotkb:p195(gene name synonym)	psi-mi:"MI:0096"(pull down)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117924|imex:IM-27448-6	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	ensembl:ENSG00000140575(gene)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005547"(phosphatidylinositol-3,4,5-trisphosphate binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005874"(microtubule)|go:"GO:0005884"(actin filament)|go:"GO:0005886"(plasma membrane)|ensembl:ENST00000268182(transcript)|go:"GO:0001726"(ruffle)|go:"GO:0005925"(focal adhesion)|go:"GO:0007165"(signal transduction)|go:"GO:0007173"(epidermal growth factor receptor signaling pathway)|go:"GO:0005078"(MAP-kinase scaffold activity)|go:"GO:0005095"(GTPase inhibitor activity)|go:"GO:0007346"(regulation of mitotic cell cycle)|go:"GO:0005096"(GTPase activator activity)|go:"GO:0016477"(cell migration)|go:"GO:0019901"(protein kinase binding)|go:"GO:0019903"(protein phosphatase binding)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0005509"(calcium ion binding)|go:"GO:0030424"(axon)|go:"GO:0030426"(growth cone)|go:"GO:0030496"(midbody)|go:"GO:0031234"(extrinsic component of cytoplasmic side of plasma membrane)|go:"GO:0031267"(small GTPase binding)|go:"GO:0032956"(regulation of actin cytoskeleton organization)|go:"GO:0032991"(protein-containing complex)|go:"GO:0036057"(slit diaphragm)|go:"GO:0036464"(cytoplasmic ribonucleoprotein granule)|go:"GO:0043005"(neuron projection)|go:"GO:0043087"(regulation of GTPase activity)|go:"GO:0043406"(positive regulation of MAP kinase activity)|go:"GO:0043410"(positive regulation of MAPK cascade)|go:"GO:0043539"(protein serine/threonine kinase activator activity)|go:"GO:0044548"(S100 protein binding)|go:"GO:0045121"(membrane raft)|go:"GO:0045296"(cadherin binding)|go:"GO:0045860"(positive regulation of protein kinase activity)|go:"GO:0051015"(actin filament binding)|go:"GO:0051019"(mitogen-activated protein kinase binding)|go:"GO:0051894"(positive regulation of focal adhesion assembly)|go:"GO:0060090"(molecular adaptor activity)|go:"GO:0070062"(extracellular exosome)|go:"GO:0071277"(cellular response to calcium ion)|go:"GO:0071364"(cellular response to epidermal growth factor stimulus)|go:"GO:0072015"(glomerular visceral epithelial cell development)|go:"GO:1900006"(positive regulation of dendrite development)|go:"GO:1900086"(positive regulation of peptidyl-tyrosine autophosphorylation)|go:"GO:1903829"(positive regulation of protein localization)|go:"GO:1904754"(positive regulation of vascular associated smooth muscle cell migration)|go:"GO:1990138"(neuron projection extension)|go:"GO:1990776"(response to angiotensin)|interpro:IPR000048(IQ calmodulin-binding region)|go:"GO:0030667"(secretory granule membrane)|interpro:IPR000593(RasGAP protein, C-terminal)|interpro:IPR001202(WW/Rsp5/WWP)|interpro:IPR001715(Calponin-like actin-binding)|interpro:IPR001936(Ras GTPase-activating protein)|interpro:IPR008936(Rho GTPase activation protein)|interpro:IPR023152|interpro:IPR027417|interpro:IPR036872|mint:P46940|rcsb pdb:1X0H|rcsb pdb:2RR8|rcsb pdb:3FAY|rcsb pdb:3I6X|rcsb pdb:5L0O|reactome:R-HSA-373753|reactome:R-HSA-381676|reactome:R-HSA-5626467|reactome:R-HSA-5674135|reactome:R-HSA-6798695|reactome:R-HSA-6802946|reactome:R-HSA-6802948|reactome:R-HSA-6802952|reactome:R-HSA-6802955|reactome:R-HSA-8980692|reactome:R-HSA-9013106|reactome:R-HSA-9013148|reactome:R-HSA-9013149|reactome:R-HSA-9013404|reactome:R-HSA-9013406|reactome:R-HSA-9013420|reactome:R-HSA-9013424|reactome:R-HSA-9649948|reactome:R-HSA-9656223|refseq:NP_003861.1|dip:DIP-32597N	-	-	-	figure legend:suppl. fig.3|comment:"We used the active GST-tagged RNF146 protein and GST control protein to affinity purify interacting proteins from cell lysates of three cell lines (HEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15). Mass spectrometric identification of protein interactors revealed seven proteins that were identified by at least 10 unique peptides in all three cell lines by GST-RNF146, but were not identified in any of the cell lines using the GST control protein (Figure S3). These specific interacting partners include PARP1 and three other proteins involved in DNA damage response."|variable_condition:similar result obtain inHEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:nXO2Z6Qn8EQGfziT8dnWz1pbK/w9606	rigid:Als4orCtrd2rwvPirFD5RbX5AlE	false	glutathione s tranferase tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:O43143	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-1237044|uniprotkb:Q9NQT7|ensembl:ENSP00000336741	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:dhx15_human(display_long)|uniprotkb:DHX15(gene name)|psi-mi:DHX15(display_short)|uniprotkb:DBP1(gene name synonym)|uniprotkb:DDX15(gene name synonym)|uniprotkb:DEAH box protein 15(gene name synonym)|uniprotkb:ATP-dependent RNA helicase #46(gene name synonym)	psi-mi:"MI:0096"(pull down)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117924|imex:IM-27448-6	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001349.2|dip:DIP-38211N|go:"GO:0140603"(obsolete ATP hydrolysis activity)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR002464(DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site)|interpro:IPR007502(Helicase-associated region)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR011709(Region of unknown function DUF1605)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|interpro:IPR044756|mint:O43143|rcsb pdb:5XDR|rcsb pdb:6ID1|rcsb pdb:6SH6|rcsb pdb:6SH7|reactome:R-HSA-72163|ensembl:ENSG00000109606(gene)|ensembl:ENST00000336812(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005681"(spliceosomal complex)|go:"GO:0005689"(U12-type spliceosomal complex)|go:"GO:0005730"(nucleolus)|go:"GO:0006397"(mRNA processing)|go:"GO:0008380"(RNA splicing)|go:"GO:0009636"(response to toxic substance)|go:"GO:0016607"(nuclear speck)|go:"GO:0043279"(response to alkaloid)	-	-	-	figure legend:suppl. fig.3|comment:"We used the active GST-tagged RNF146 protein and GST control protein to affinity purify interacting proteins from cell lysates of three cell lines (HEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15). Mass spectrometric identification of protein interactors revealed seven proteins that were identified by at least 10 unique peptides in all three cell lines by GST-RNF146, but were not identified in any of the cell lines using the GST control protein (Figure S3). These specific interacting partners include PARP1 and three other proteins involved in DNA damage response."|variable_condition:similar result obtain inHEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:rOkQ5RG/3gc1/0Qcn5ANS6ImepY9606	rigid:Als4orCtrd2rwvPirFD5RbX5AlE	false	glutathione s tranferase tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q16531	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-350322|uniprotkb:A6NG77|uniprotkb:O15176|uniprotkb:Q13289|ensembl:ENSP00000301764|ensembl:ENSP00000506223|ensembl:ENSP00000506685|uniprotkb:Q58F96|uniprotkb:B2R648|uniprotkb:B4DG00	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:ddb1_human(display_long)|uniprotkb:DDB1(gene name)|psi-mi:DDB1(display_short)|uniprotkb:Damage-specific DNA-binding protein 1(gene name synonym)|uniprotkb:UV-damaged DNA-binding factor(gene name synonym)|uniprotkb:DDB p127 subunit(gene name synonym)|uniprotkb:DNA damage-binding protein a(gene name synonym)|uniprotkb:UV-damaged DNA-binding protein 1(gene name synonym)|uniprotkb:Xeroderma pigmentosum group E-complementing protein(gene name synonym)|uniprotkb:XPE-binding factor(gene name synonym)|uniprotkb:HBV X-associated protein 1(gene name synonym)|uniprotkb:XAP1(gene name synonym)	psi-mi:"MI:0096"(pull down)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117924|imex:IM-27448-6	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001914.3|rcsb pdb:3I89|rcsb pdb:3I8C|rcsb pdb:3I8E|rcsb pdb:4A08|rcsb pdb:4A09|rcsb pdb:4A0A|rcsb pdb:4A0B|rcsb pdb:4A0K|rcsb pdb:4A0L|rcsb pdb:4A11|rcsb pdb:4CI1|rcsb pdb:4CI2|rcsb pdb:4CI3|rcsb pdb:4E54|rcsb pdb:4E5Z|rcsb pdb:4TZ4|rcsb pdb:5FQD|rcsb pdb:5HXB|rcsb pdb:5JK7|rcsb pdb:5V3O|rcsb pdb:6BN7|ensembl:ENSG00000167986(gene)|ensembl:ENST00000301764(transcript)|ensembl:ENST00000680367(transcript)|ensembl:ENST00000681803(transcript)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003677"(DNA binding)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0005615"(extracellular space)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0006281"(DNA repair)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0010498"(proteasomal protein catabolic process)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0016567"(protein ubiquitination)|go:"GO:0030674"(protein-macromolecule adaptor activity)|rcsb pdb:6BN8|rcsb pdb:6BN9|rcsb pdb:6BNB|rcsb pdb:6BOY|rcsb pdb:6DSZ|rcsb pdb:6FCV|rcsb pdb:6H0F|rcsb pdb:6H0G|rcsb pdb:6PAI|rcsb pdb:6Q0R|rcsb pdb:6Q0V|rcsb pdb:6Q0W|rcsb pdb:6R8Y|rcsb pdb:6R8Z|rcsb pdb:6R90|rcsb pdb:6R91|rcsb pdb:6R92|rcsb pdb:6SJ7|rcsb pdb:6TD3|rcsb pdb:6UD7|rcsb pdb:6UE5|rcsb pdb:6UML|rcsb pdb:6XK9|rcsb pdb:7LPS|reactome:R-HSA-110314|reactome:R-HSA-5696394|reactome:R-HSA-5696395|reactome:R-HSA-5696400|reactome:R-HSA-6781823|reactome:R-HSA-6781827|reactome:R-HSA-6782135|reactome:R-HSA-6782210|reactome:R-HSA-8951664|go:"GO:0031464"(Cul4A-RING E3 ubiquitin ligase complex)|go:"GO:0031465"(Cul4B-RING E3 ubiquitin ligase complex)|go:"GO:0032991"(protein-containing complex)|go:"GO:0035518"(histone H2A monoubiquitination)|go:"GO:0035861"(site of double-strand break)|go:"GO:0042752"(regulation of circadian rhythm)|go:"GO:0043066"(negative regulation of apoptotic process)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0044877"(protein-containing complex binding)|go:"GO:0045070"(positive regulation of viral genome replication)|go:"GO:0045722"(positive regulation of gluconeogenesis)|go:"GO:0045732"(positive regulation of protein catabolic process)|go:"GO:0046726"(positive regulation by virus of viral protein levels in host cell)|go:"GO:0048511"(rhythmic process)|go:"GO:0051702"(biological process involved in interaction with symbiont)|go:"GO:0070062"(extracellular exosome)|go:"GO:0070914"(UV-damage excision repair)|go:"GO:0071987"(WD40-repeat domain binding)|go:"GO:0080008"(Cul4-RING E3 ubiquitin ligase complex)|go:"GO:0097602"(cullin family protein binding)|go:"GO:1901990"(regulation of mitotic cell cycle phase transition)|go:"GO:1902188"(obsolete positive regulation of viral release from host cell)|interpro:IPR004871(Cleavage and polyadenylation specificity factor, A subunit, C-terminal)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR018846|interpro:IPR031297|interpro:IPR036322|mint:Q16531|rcsb pdb:2B5L|rcsb pdb:2B5M|rcsb pdb:2B5N|rcsb pdb:2HYE|rcsb pdb:3E0C|rcsb pdb:3EI1|rcsb pdb:3EI2|rcsb pdb:3EI3|rcsb pdb:3EI4|rcsb pdb:3I7H|rcsb pdb:3I7K|rcsb pdb:3I7L|rcsb pdb:3I7N|rcsb pdb:3I7O|rcsb pdb:3I7P|dip:DIP-430N	-	-	-	figure legend:suppl. fig.3|comment:"We used the active GST-tagged RNF146 protein and GST control protein to affinity purify interacting proteins from cell lysates of three cell lines (HEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15). Mass spectrometric identification of protein interactors revealed seven proteins that were identified by at least 10 unique peptides in all three cell lines by GST-RNF146, but were not identified in any of the cell lines using the GST control protein (Figure S3). These specific interacting partners include PARP1 and three other proteins involved in DNA damage response."|variable_condition:similar result obtain inHEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:qgMjZqvlsbGIGn2qM/pnLTtGyGM9606	rigid:Als4orCtrd2rwvPirFD5RbX5AlE	false	glutathione s tranferase tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P42704	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-1050853|uniprotkb:A0PJE3|uniprotkb:A8K1V1|uniprotkb:Q53PC0|uniprotkb:Q53QN7|uniprotkb:Q96D84|uniprotkb:Q6ZUD8|uniprotkb:Q7Z7A6|ensembl:ENSP00000260665	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:lpprc_human(display_long)|uniprotkb:130 kDa leucine-rich protein(gene name synonym)|uniprotkb:GP130(gene name synonym)|uniprotkb:LRPPRC(gene name)|psi-mi:LRPPRC(display_short)|uniprotkb:LRP130(gene name synonym)	psi-mi:"MI:0096"(pull down)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117924|imex:IM-27448-6	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_573566.2|ensembl:ENSG00000138095(gene)|ensembl:ENST00000260665(transcript)|go:"GO:0000794"(condensed nuclear chromosome)|go:"GO:0000961"(negative regulation of mitochondrial RNA catabolic process)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005637"(nuclear inner membrane)|go:"GO:0005640"(nuclear outer membrane)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005739"(mitochondrion)|go:"GO:0005856"(cytoskeleton)|go:"GO:0005874"(microtubule)|go:"GO:0008017"(microtubule binding)|go:"GO:0016020"(membrane)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0042645"(mitochondrial nucleoid)|go:"GO:0047497"(mitochondrion transport along microtubule)|go:"GO:0048471"(perinuclear region of cytoplasm)|go:"GO:0048487"(beta-tubulin binding)|go:"GO:0051028"(mRNA transport)|go:"GO:0070129"(regulation of mitochondrial translation)|go:"GO:1990904"(ribonucleoprotein complex)|interpro:IPR002885(Pentatricopeptide repeat)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR033443|interpro:IPR033490|mint:P42704|reactome:R-HSA-5628897|reactome:R-HSA-611105|reactome:R-HSA-9707564|dip:DIP-27543N	-	-	-	figure legend:suppl. fig.3|comment:"We used the active GST-tagged RNF146 protein and GST control protein to affinity purify interacting proteins from cell lysates of three cell lines (HEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15). Mass spectrometric identification of protein interactors revealed seven proteins that were identified by at least 10 unique peptides in all three cell lines by GST-RNF146, but were not identified in any of the cell lines using the GST control protein (Figure S3). These specific interacting partners include PARP1 and three other proteins involved in DNA damage response."|variable_condition:similar result obtain inHEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:U0ERiW4agkBDQ7iWXWgRQxhozkg9606	rigid:Als4orCtrd2rwvPirFD5RbX5AlE	false	glutathione s tranferase tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P78527	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-352053|uniprotkb:P78528|uniprotkb:Q13327|uniprotkb:Q13337|uniprotkb:Q14175|uniprotkb:Q59H99|uniprotkb:Q7Z611|uniprotkb:Q96SE6|uniprotkb:Q9UME3|ensembl:ENSP00000313420	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:prkdc_human(display_long)|uniprotkb:PRKDC(gene name)|psi-mi:PRKDC(display_short)|uniprotkb:HYRC(gene name synonym)|uniprotkb:HYRC1(gene name synonym)|uniprotkb:DNPK1(gene name synonym)|uniprotkb:p460(gene name synonym)	psi-mi:"MI:0096"(pull down)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117924|imex:IM-27448-6	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001075109.1|refseq:NP_008835.5|ensembl:ENSG00000253729(gene)|ensembl:ENST00000314191(transcript)|go:"GO:0000460"(maturation of 5.8S rRNA)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0001756"(somitogenesis)|go:"GO:0001933"(negative regulation of protein phosphorylation)|go:"GO:0002218"(activation of innate immune response)|go:"GO:0002326"(B cell lineage commitment)|go:"GO:0002328"(pro-B cell differentiation)|go:"GO:0002360"(T cell lineage commitment)|go:"GO:0002638"(negative regulation of immunoglobulin production)|go:"GO:0003690"(double-stranded DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0004672"(protein kinase activity)|go:"GO:0004674"(protein serine/threonine kinase activity)|go:"GO:0004677"(DNA-dependent protein kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005667"(transcription regulator complex)|go:"GO:0005730"(nucleolus)|go:"GO:0005829"(cytosol)|go:"GO:0005958"(DNA-dependent protein kinase-DNA ligase 4 complex)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006303"(double-strand break repair via nonhomologous end joining)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0006468"(protein phosphorylation)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007420"(brain development)|go:"GO:0007507"(heart development)|go:"GO:0008134"(transcription factor binding)|go:"GO:0008630"(intrinsic apoptotic signaling pathway in response to DNA damage)|go:"GO:0010332"(response to gamma radiation)|go:"GO:0014823"(response to activity)|go:"GO:0016020"(membrane)|go:"GO:0016233"(telomere capping)|go:"GO:0018105"(peptidyl-serine phosphorylation)|go:"GO:0018107"(peptidyl-threonine phosphorylation)|go:"GO:0019899"(enzyme binding)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0031571"(mitotic G1 DNA damage checkpoint signaling)|go:"GO:0031648"(protein destabilization)|go:"GO:0032040"(small-subunit processome)|go:"GO:0032869"(cellular response to insulin stimulus)|go:"GO:0032991"(protein-containing complex)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0033077"(T cell differentiation in thymus)|go:"GO:0033152"("immunoglobulin V(D)J recombination")|go:"GO:0033153"("T cell receptor V(D)J recombination")|go:"GO:0034462"(small-subunit processome assembly)|go:"GO:0034511"(U3 snoRNA binding)|go:"GO:0035234"(ectopic germ cell programmed cell death)|go:"GO:0042752"(regulation of circadian rhythm)|go:"GO:0043065"(positive regulation of apoptotic process)|go:"GO:0043066"(negative regulation of apoptotic process)|go:"GO:0045087"(innate immune response)|go:"GO:0045621"(positive regulation of lymphocyte differentiation)|go:"GO:0045648"(positive regulation of erythrocyte differentiation)|go:"GO:0045727"(positive regulation of translation)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0048146"(positive regulation of fibroblast proliferation)|go:"GO:0048511"(rhythmic process)|go:"GO:0048536"(spleen development)|go:"GO:0048538"(thymus development)|go:"GO:0048639"(positive regulation of developmental growth)|go:"GO:0048660"(regulation of smooth muscle cell proliferation)|go:"GO:0050678"(regulation of epithelial cell proliferation)|go:"GO:0070419"(nonhomologous end joining complex)|go:"GO:2001229"(negative regulation of response to gamma radiation)|interpro:IPR000403(Phosphatidylinositol 3- and 4-kinase, catalytic)|go:"GO:0097681"(double-strand break repair via alternative nonhomologous end joining)|interpro:IPR003151(PIK-related kinase, FAT)|interpro:IPR003152(PIK-related kinase, FATC)|interpro:IPR011009(Protein kinase-like)|interpro:IPR011989(Armadillo-like helical)|interpro:IPR012582(NUC194)|interpro:IPR014009(PIK-related kinase)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR018936|interpro:IPR036940|interpro:IPR037706|mint:P78527|go:"GO:0106310"(protein serine kinase activity)|rcsb pdb:5LUQ|rcsb pdb:5W1R|rcsb pdb:5Y3R|rcsb pdb:6ZFP|rcsb pdb:6ZH2|rcsb pdb:6ZH4|go:"GO:0106311"|rcsb pdb:6ZH6|rcsb pdb:6ZH8|rcsb pdb:6ZHA|rcsb pdb:6ZHE|rcsb pdb:7K0Y|rcsb pdb:7K10|go:"GO:1902036"(regulation of hematopoietic stem cell differentiation)|rcsb pdb:7K11|rcsb pdb:7K19|go:"GO:1905221"(positive regulation of platelet formation)|rcsb pdb:7K1B|rcsb pdb:7K1J|go:"GO:2000773"(negative regulation of cellular senescence)|rcsb pdb:7K1K|go:"GO:2001034"(positive regulation of double-strand break repair via nonhomologous end joining)|rcsb pdb:7K1N|rcsb pdb:7LT3|reactome:R-HSA-1834949|reactome:R-HSA-3270619|reactome:R-HSA-5693571|reactome:R-HSA-8866654|ensembl:ENSP00000313420|ensembl:ENST00000338368|ensembl:ENSP00000345182|dip:DIP-24186N	-	-	-	figure legend:suppl. fig.3|comment:"We used the active GST-tagged RNF146 protein and GST control protein to affinity purify interacting proteins from cell lysates of three cell lines (HEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15). Mass spectrometric identification of protein interactors revealed seven proteins that were identified by at least 10 unique peptides in all three cell lines by GST-RNF146, but were not identified in any of the cell lines using the GST control protein (Figure S3). These specific interacting partners include PARP1 and three other proteins involved in DNA damage response."|variable_condition:similar result obtain inHEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:WKXDHilQTGO8zQRd8ZcMYha99PM9606	rigid:Als4orCtrd2rwvPirFD5RbX5AlE	false	glutathione s tranferase tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:Q9Y230	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-352939|ensembl:ENSP00000473172|uniprotkb:Q6FIB9|uniprotkb:Q6PK27|uniprotkb:Q9Y361|uniprotkb:B3KQ59|uniprotkb:E7ETE5|intact:EBI-1058527	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:ruvb2_human(display_long)|uniprotkb:RUVBL2(gene name)|psi-mi:RUVBL2(display_short)|uniprotkb:TIP48(gene name synonym)|uniprotkb:TIP49B(gene name synonym)|uniprotkb:CGI-46(orf name)|uniprotkb:48 kDa TATA box-binding protein-interacting protein(gene name synonym)|uniprotkb:TIP49b(gene name synonym)|uniprotkb:Repressing pontin 52(gene name synonym)|uniprotkb:51 kDa erythrocyte cytosolic protein(gene name synonym)|uniprotkb:INO80J(gene name synonym)|uniprotkb:TIP60-associated protein 54-beta(gene name synonym)|uniprotkb:INO80 complex subunit J(gene name synonym)	psi-mi:"MI:0096"(pull down)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117924|imex:IM-27448-6	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	go:"GO:0140603"(obsolete ATP hydrolysis activity)|go:"GO:1904874"(positive regulation of telomerase RNA localization to Cajal body)|go:"GO:1990904"(ribonucleoprotein complex)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR010339(TIP49, C-terminal)|interpro:IPR027238|interpro:IPR027417|interpro:IPR037942|interpro:IPR041048|interpro:IPR042487|mint:Q9Y230|rcsb pdb:2CQA|rcsb pdb:2XSZ|rcsb pdb:3UK6|rcsb pdb:5OAF|rcsb pdb:6FO1|rcsb pdb:6H7X|rcsb pdb:6HTS|rcsb pdb:6IGM|rcsb pdb:6K0R|rcsb pdb:6QI8|rcsb pdb:6QI9|rcsb pdb:7AHO|reactome:R-HSA-171319|go:"GO:0140585"(promoter-enhancer loop anchoring activity)|reactome:R-HSA-3214847|ensembl:ENSG00000183207(gene)|ensembl:ENST00000595090(transcript)|go:"GO:0000492"(box C/D snoRNP assembly)|go:"GO:0000791"(euchromatin)|go:"GO:0000812"(Swr1 complex)|go:"GO:0000978"(RNA polymerase II cis-regulatory region sequence-specific DNA binding)|go:"GO:0000979"(RNA polymerase II core promoter sequence-specific DNA binding)|go:"GO:0001094"(TFIID-class transcription factor complex binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0003714"(transcription corepressor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005813"(centrosome)|go:"GO:0005829"(cytosol)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0006338"(chromatin remodeling)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0006457"(protein folding)|go:"GO:0008013"(beta-catenin binding)|go:"GO:0016020"(membrane)|go:"GO:0016363"(nuclear matrix)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0031011"(Ino80 complex)|go:"GO:0031490"(chromatin DNA binding)|go:"GO:0034644"(cellular response to UV)|go:"GO:0035066"(positive regulation of histone acetylation)|go:"GO:0035267"(NuA4 histone acetyltransferase complex)|go:"GO:0040008"(regulation of growth)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043139"(5'-3' DNA helicase activity)|go:"GO:0043531"(ADP binding)|go:"GO:0043967"(histone H4 acetylation)|go:"GO:0043968"(histone H2A acetylation)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0051082"(unfolded protein binding)|go:"GO:0051117"(ATPase binding)|go:"GO:0070062"(extracellular exosome)|go:"GO:0071169"(establishment of protein localization to chromatin)|go:"GO:0071339"(MLL1 complex)|go:"GO:0071392"(cellular response to estradiol stimulus)|go:"GO:0016573"(histone acetylation)|go:"GO:0090090"(negative regulation of canonical Wnt signaling pathway)|go:"GO:0097255"(R2TP complex)|go:"GO:0120293"(dynein axonemal particle)|refseq:NP_006657.1|refseq:XP_011524632.1|refseq:NP_001308120.1|dip:DIP-28153N	-	-	-	figure legend:suppl. fig.3|comment:"We used the active GST-tagged RNF146 protein and GST control protein to affinity purify interacting proteins from cell lysates of three cell lines (HEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15). Mass spectrometric identification of protein interactors revealed seven proteins that were identified by at least 10 unique peptides in all three cell lines by GST-RNF146, but were not identified in any of the cell lines using the GST control protein (Figure S3). These specific interacting partners include PARP1 and three other proteins involved in DNA damage response."|variable_condition:similar result obtain inHEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:APKAWLDCJVULUP3nzqIaSLHKVN49606	rigid:Als4orCtrd2rwvPirFD5RbX5AlE	false	glutathione s tranferase tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)
uniprotkb:Q9NTX7	uniprotkb:P09874	intact:EBI-722397|uniprotkb:Q6FIB2|uniprotkb:Q7L8H4|uniprotkb:Q96K03|uniprotkb:Q9NTX6|uniprotkb:E1P572|uniprotkb:Q96T06|intact:EBI-28979460|ensembl:ENSP00000357297|ensembl:ENSP00000476814	intact:EBI-355676|uniprotkb:Q8IUZ9|uniprotkb:B1ANJ4|ensembl:ENSP00000355759	psi-mi:rn146_human(display_long)|uniprotkb:Dactylidin(gene name synonym)|uniprotkb:RNF146(gene name)|psi-mi:RNF146(display_short)|uniprotkb:RING finger protein 146(gene name synonym)|uniprotkb:Iduna(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase RNF146(gene name synonym)	psi-mi:parp1_human(display_long)|uniprotkb:PARP1(gene name)|psi-mi:PARP1(display_short)|uniprotkb:ADPRT(gene name synonym)|uniprotkb:PPOL(gene name synonym)|uniprotkb:"NAD(+) ADP-ribosyltransferase 1"(gene name synonym)|uniprotkb:Poly[ADP-ribose] synthase 1(gene name synonym)|uniprotkb:ADP-ribosyltransferase diphtheria toxin-like 1(gene name synonym)|uniprotkb:DNA ADP-ribosyltransferase PARP1(gene name synonym)|uniprotkb:Protein poly-ADP-ribosyltransferase PARP1(gene name synonym)	psi-mi:"MI:0096"(pull down)	Callow et al. (2010)	pubmed:21799911|imex:IM-27448	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0471"(MINT)	intact:EBI-22117924|imex:IM-27448-6	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001229773.1|refseq:NP_001229774.1|refseq:NP_001229775.1|refseq:NP_001229778.1|refseq:NP_001229779.1|refseq:NP_001229780.1|refseq:NP_001229781.1|refseq:NP_112225.2|ensembl:ENSP00000357297|ensembl:ENST00000608991|ensembl:ENSP00000477168|ensembl:ENSP00000476814|refseq:NP_001229776.1|refseq:NP_001229777.1|refseq:XP_011534463.1|refseq:XP_011534464.1|refseq:XP_011534465.1|refseq:XP_011534466.1|refseq:XP_006715634.1|refseq:XP_016866825.1|refseq:XP_016866826.1|refseq:XP_016866827.1|refseq:XP_016866828.1|refseq:XP_016866829.1|refseq:XP_016866830.1|refseq:XP_016866831.1|refseq:XP_016866832.1|dip:DIP-52730N|ensembl:ENSG00000118518(gene)|ensembl:ENST00000368314(transcript)|ensembl:ENST00000610153(transcript)|go:"GO:0004842"(ubiquitin-protein transferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016055"(Wnt signaling pathway)|go:"GO:0051865"(protein autoubiquitination)|go:"GO:0061630"(ubiquitin protein ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|go:"GO:0072572"(poly-ADP-D-ribose binding)|go:"GO:0090263"(positive regulation of canonical Wnt signaling pathway)|interpro:IPR001841(Zinc finger, RING-type)|interpro:IPR004170(WWE)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|interpro:IPR017907|interpro:IPR018123|interpro:IPR033509|interpro:IPR037197|interpro:IPR044110|mint:Q9NTX7|rcsb pdb:2D8T|rcsb pdb:3V3L|rcsb pdb:6CF6|reactome:R-HSA-201681|reactome:R-HSA-4641257|reactome:R-HSA-5689880|reactome:R-HSA-8948751	refseq:NP_001609.2|rcsb pdb:7AAC|rcsb pdb:7AAD|rcsb pdb:6NRJ|rcsb pdb:6NTU|rcsb pdb:7CMW|rcsb pdb:6VKK|rcsb pdb:7KK2|rcsb pdb:7KK3|rcsb pdb:7KK4|rcsb pdb:7KK5|rcsb pdb:7KK6|reactome:R-HSA-110362|reactome:R-HSA-192814|reactome:R-HSA-2173795|reactome:R-HSA-3108214|reactome:R-HSA-5685939|reactome:R-HSA-5696394|reactome:R-HSA-5696395|reactome:R-HSA-5696400|rcsb pdb:6VKO|rcsb pdb:6VKQ|rcsb pdb:6XVW|rcsb pdb:7AAA|rcsb pdb:7AAB|ensembl:ENSG00000143799(gene)|ensembl:ENST00000366794(transcript)|go:"GO:0000122"(negative regulation of transcription by RNA polymerase II)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000781"(chromosome, telomeric region)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003950"(NAD+ ADP-ribosyltransferase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005635"(nuclear envelope)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005667"(transcription regulator complex)|go:"GO:0005730"(nucleolus)|go:"GO:0005739"(mitochondrion)|go:"GO:0006281"(DNA repair)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0006471"(protein ADP-ribosylation)|go:"GO:0006915"(apoptotic process)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007005"(mitochondrion organization)|go:"GO:0007179"(transforming growth factor beta receptor signaling pathway)|go:"GO:0008134"(transcription factor binding)|go:"GO:0010332"(response to gamma radiation)|go:"GO:0010613"(positive regulation of cardiac muscle hypertrophy)|go:"GO:0010990"(regulation of SMAD protein complex assembly)|go:"GO:0016020"(membrane)|go:"GO:0016540"(protein autoprocessing)|go:"GO:0016604"(nuclear body)|go:"GO:0018312"(peptidyl-serine ADP-ribosylation)|go:"GO:0018424"(peptidyl-glutamic acid poly-ADP-ribosylation)|go:"GO:0019899"(enzyme binding)|go:"GO:0019901"(protein kinase binding)|go:"GO:0023019"(signal transduction involved in regulation of gene expression)|go:"GO:0030225"(macrophage differentiation)|go:"GO:0030331"(estrogen receptor binding)|go:"GO:0030592"(DNA ADP-ribosylation)|go:"GO:0032042"(mitochondrial DNA metabolic process)|go:"GO:0032869"(cellular response to insulin stimulus)|go:"GO:0032991"(protein-containing complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0035861"(site of double-strand break)|go:"GO:0036211"(protein modification process)|go:"GO:0042769"(obsolete DNA damage response, detection of DNA damage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042826"(histone deacetylase binding)|go:"GO:0043504"(mitochondrial DNA repair)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0045944"(positive regulation of transcription by RNA polymerase II)|go:"GO:0047485"(protein N-terminus binding)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:0051287"(NAD binding)|go:"GO:0051901"(positive regulation of mitochondrial depolarization)|go:"GO:0060391"(positive regulation of SMAD protein signal transduction)|go:"GO:0070212"(protein poly-ADP-ribosylation)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0033148"(positive regulation of intracellular estrogen receptor signaling pathway)|go:"GO:0070213"(protein auto-ADP-ribosylation)|go:"GO:0034599"(cellular response to oxidative stress)|go:"GO:0070412"(R-SMAD binding)|go:"GO:0034644"(cellular response to UV)|go:"GO:0071294"(cellular response to zinc ion)|go:"GO:0090734"(site of DNA damage)|go:"GO:0140294"(NAD DNA ADP-ribosyltransferase activity)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1901216"(positive regulation of neuron death)|go:"GO:1903376"(regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway)|go:"GO:1903518"(positive regulation of single strand break repair)|go:"GO:1904044"(response to aldosterone)|go:"GO:1904357"(negative regulation of telomere maintenance via telomere lengthening)|go:"GO:1904646"(cellular response to amyloid-beta)|go:"GO:1904762"(positive regulation of myofibroblast differentiation)|go:"GO:1905168"(positive regulation of double-strand break repair via homologous recombination)|go:"GO:1990404"(protein ADP-ribosylase activity)|go:"GO:1990966"(ATP generation from poly-ADP-D-ribose)|go:"GO:2000679"(positive regulation of transcription regulatory region DNA binding)|go:"GO:2001170"(negative regulation of ATP biosynthetic process)|interpro:IPR001357(BRCT)|interpro:IPR001510(Zinc finger, PARP-type)|interpro:IPR004102("Poly(ADP-ribose) polymerase, regulatory region")|interpro:IPR008288(NAD+ ADP-ribosyltransferase)|interpro:IPR008893(WGR)|interpro:IPR012317("Poly(ADP-ribose) polymerase, catalytic region")|interpro:IPR012982(PADR1)|interpro:IPR036420|interpro:IPR036616|interpro:IPR036930|interpro:IPR036957|interpro:IPR038650|mint:P09874|rcsb pdb:1UK0|rcsb pdb:1UK1|rcsb pdb:1WOK|rcsb pdb:2COK|rcsb pdb:2CR9|rcsb pdb:2CS2|rcsb pdb:2DMJ|rcsb pdb:2JVN|go:"GO:1903827"|rcsb pdb:2L30|rcsb pdb:2N8A|rcsb pdb:2RCW|rcsb pdb:2RD6|rcsb pdb:2RIQ|rcsb pdb:2L31|rcsb pdb:3GJW|rcsb pdb:3GN7|rcsb pdb:3L3L|rcsb pdb:3L3M|rcsb pdb:3OD8|rcsb pdb:3ODA|rcsb pdb:3ODC|rcsb pdb:3ODE|rcsb pdb:4AV1|rcsb pdb:4DQY|rcsb pdb:4GV7|rcsb pdb:4HHY|rcsb pdb:4HHZ|rcsb pdb:4L6S|rcsb pdb:4OPX|rcsb pdb:4OQA|rcsb pdb:4OQB|rcsb pdb:4PJT|rcsb pdb:4R5W|rcsb pdb:4R6E|rcsb pdb:4RV6|rcsb pdb:4UND|rcsb pdb:4UXB|rcsb pdb:4XHU|rcsb pdb:5A00|rcsb pdb:5DS3|rcsb pdb:5HA9|rcsb pdb:5KPN|rcsb pdb:5KPO|rcsb pdb:5KPP|rcsb pdb:5KPQ|rcsb pdb:5WRQ|rcsb pdb:5WRY|rcsb pdb:5WRZ|rcsb pdb:5WS0|rcsb pdb:5WS1|rcsb pdb:5WTC|rcsb pdb:4ZZZ|rcsb pdb:5XSR|rcsb pdb:5XST|rcsb pdb:5XSU|rcsb pdb:6BHV|rcsb pdb:6GHK|rcsb pdb:6M3I|rcsb pdb:6NRF|rcsb pdb:6NRG|rcsb pdb:6NRH|rcsb pdb:6NRI|dip:DIP-38N	-	-	-	figure legend:suppl. fig.3|comment:"We used the active GST-tagged RNF146 protein and GST control protein to affinity purify interacting proteins from cell lysates of three cell lines (HEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15). Mass spectrometric identification of protein interactors revealed seven proteins that were identified by at least 10 unique peptides in all three cell lines by GST-RNF146, but were not identified in any of the cell lines using the GST control protein (Figure S3). These specific interacting partners include PARP1 and three other proteins involved in DNA damage response."|variable_condition:similar result obtain inHEK293, HEK293 activated for Wnt signaling by LRP6 overexpression, and HCT-15|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2019/10/22	2019/11/18	rogid:7/KiZcZQYfSeZ6EYqP/FCtk1Mws9606	rogid:VC+4HLilGJuoiTbk4/fSeRw9+iY9606	rigid:Als4orCtrd2rwvPirFD5RbX5AlE	false	glutathione s tranferase tag:?-?	-	-	-	psi-mi:"MI:0102"(sequence tag identification)	psi-mi:"MI:0102"(sequence tag identification)