DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structure (London, England : 1993) 2012 imex curation Hall Z., Politis A., Robinson CV. Only protein-protein interactions ecolx Escherichia coli ion mobility mass spec ion mobility mass spectrometry of complexes ion mobility mass spec predetermined predetermined participant predetermined Hall Z., Politis A., Robinson CV. DIP original experiment: DIP-250522X Structure (London, England : 1993) 2012 IMEx Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structure (London, England : 1993) 2012 imex curation Hall Z., Politis A., Robinson CV. Only protein-protein interactions ecolx Escherichia coli ion mobility mass spec ion mobility mass spectrometry of complexes ion mobility mass spec predetermined predetermined participant predetermined Hall Z., Politis A., Robinson CV. DIP original experiment: DIP-250519X Structure (London, England : 1993) 2012 IMEx Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structure (London, England : 1993) 2012 imex curation Hall Z., Politis A., Robinson CV. Only protein-protein interactions metca Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) ion mobility mass spec ion mobility mass spectrometry of complexes ion mobility mass spec predetermined predetermined participant predetermined Hall Z., Politis A., Robinson CV. DIP original experiment: DIP-250515X Structure (London, England : 1993) 2012 IMEx Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structure (London, England : 1993) 2012 imex curation Hall Z., Politis A., Robinson CV. Only protein-protein interactions ecolx Escherichia coli ion mobility mass spec ion mobility mass spectrometry of complexes ion mobility mass spec predetermined predetermined participant predetermined Hall Z., Politis A., Robinson CV. DIP original experiment: DIP-250518X Structure (London, England : 1993) 2012 IMEx Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structure (London, England : 1993) 2012 imex curation Hall Z., Politis A., Robinson CV. Only protein-protein interactions ecolx Escherichia coli ion mobility mass spec ion mobility mass spectrometry of complexes ion mobility mass spec predetermined predetermined participant predetermined Hall Z., Politis A., Robinson CV. DIP original experiment: DIP-250523X Structure (London, England : 1993) 2012 IMEx Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structure (London, England : 1993) 2012 imex curation Hall Z., Politis A., Robinson CV. Only protein-protein interactions ecolx Escherichia coli ion mobility mass spec ion mobility mass spectrometry of complexes ion mobility mass spec predetermined predetermined participant predetermined Hall Z., Politis A., Robinson CV. DIP original experiment: DIP-250520X Structure (London, England : 1993) 2012 IMEx Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structure (London, England : 1993) 2012 imex curation Hall Z., Politis A., Robinson CV. Only protein-protein interactions ecolx Escherichia coli ion mobility mass spec ion mobility mass spectrometry of complexes ion mobility mass spec predetermined predetermined participant predetermined Hall Z., Politis A., Robinson CV. DIP original experiment: DIP-250521X Structure (London, England : 1993) 2012 IMEx Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structure (London, England : 1993) 2012 imex curation Hall Z., Politis A., Robinson CV. Only protein-protein interactions metca Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) ion mobility mass spec ion mobility mass spectrometry of complexes ion mobility mass spec predetermined predetermined participant predetermined Hall Z., Politis A., Robinson CV. DIP original experiment: DIP-250516X Structure (London, England : 1993) 2012 IMEx Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. Structure (London, England : 1993) 2012 imex curation Hall Z., Politis A., Robinson CV. Only protein-protein interactions ecolx Escherichia coli ion mobility mass spec ion mobility mass spectrometry of complexes ion mobility mass spec predetermined predetermined participant predetermined Hall Z., Politis A., Robinson CV. DIP original experiment: DIP-250517X Structure (London, England : 1993) 2012 IMEx Structural modeling of heteromeric protein complexes from disassembly pathways and ion mobility-mass spectrometry. memg_metca Methane monooxygenase component A gamma chain mmoZ Methane hydroxylase MCA1198 protein protein metca Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) MAKLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQSPH DIP protein P11987 original sequence version: 96 DIP protein P11987 original sequence version: 99 DIP protein P11987 original sequence version: 93 6030AF38130BA497 carb_ecoli Carbamoyl-phosphate synthase large chain carB pyrA b0033 Carbamoyl-phosphate synthetase ammonia chain JW0031 protein protein ecoli Escherichia coli (strain K12) MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK DIP protein P00968 original sequence version: 118 DIP protein P00968 original sequence version: 143 DIP protein P00968 original sequence version: null A09D019CBDFF8D2B o87802_psest touE protein protein psest Pseudomonas stutzeri Pseudomonas perfectomarina MSEQQPEALKPLKTWSHLAGNRRRPSEYEVVSTNLHYFTDNPERPWELDSNLPMQTWYKKYCFDSPLKHDDWNAFRDPDQLVYRTYNLLQDGQESYVQGLFDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGNREVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASRYVRQMMGL DIP protein O87802 original sequence version: 65 DIP protein O87802 original sequence version: 56 09F9A3180112D88B trpa_salty Tryptophan synthase alpha chain trpA STM1727 protein protein salty Salmonella typhimurium MERYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSAMKAASRA DIP protein P00929 original sequence version: 136 DIP protein P00929 original sequence version: 128 F409BF1A931581B5 accd_ecoli Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta accD dedB usg b2316 JW2313 protein protein ecoli Escherichia coli (strain K12) MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLPAPNPEAPREGVVVPPVPDQEPEA DIP protein P0A9Q5 original sequence version: 42 DIP protein P0A9Q5 original sequence version: 66 401FEC94D728F3CB q8rtl4_9burk nbzAc protein protein comsp Comamonas sp. JS765 MSYQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHIEHTKTTDR DIP protein Q8RTL4 original sequence version: 58 DIP protein Q8RTL4 original sequence version: 53 4CA961F99A37DF3A mema_metca Methane monooxygenase component A alpha chain mmoX Methane hydroxylase MCA1194 protein protein metca Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) MALSTATKAATDALAANRAPTSVNAQEVHRWLQSFNWDFKNNRTKYATKYKMANETKEQFKLIAKEYARMEAVKDERQFGSLQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVEPWVKTWNRWVYEDWGGIWIGRLGKYGVESPRSLKDAKQDAYWAHHDLYLLAYALWPTGFFRLALPDQEEMEWFEANYPGWYDHYGKIYEEWRARGCEDPSSGFIPLMWFIENNHPIYIDRVSQVPFCPSLAKGASTLRVHEYNGQMHTFSDQWGERMWLAEPERYECQNIFEQYEGRELSEVIAELHGLRSDGKTLIAQPHVRGDKLWTLDDIKRLNCVFKNPVKAFN DIP protein P22869 original sequence version: 100 DIP protein P22869 original sequence version: 103 DIP protein P22869 original sequence version: 97 953438FDF5208374 q8rtl3_9burk nbzAd protein protein comsp Comamonas sp. JS765 MMINTQEDKLVSAHDAEEFHRFFVGHDSDLQQEVTTLLTREAHLLDIQAYKAWLEHFVAPEIKYQVISRELRSTSERRYQLNDAVNLYNENYQQLKVRVEHQMDPQNWANNPKIRFTRFVTNVTAAKDKSAPEILHVRSNLILHRARRENQVDVFYATREDKWKRIEGGGIKLVERFVDYPERIPQTHNLLVFL DIP protein Q8RTL3 original sequence version: 42 DIP protein Q8RTL3 original sequence version: 37 DA5F55AEFA1C4D94 memb_metca Methane monooxygenase component A beta chain mmoY Methane hydroxylase MCA1195 protein protein metca Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) MSMLGERRRGLTDPEMAAVILKALPEAPLDGNNKMGYFVTPRWKRLTEYEALTVYAQPNADWIAGGLDWGDWTQKFHGGRPSWGNETTELRTVDWFKHRDPLRRWHAPYVKDKAEEWRYTDRFLQGYSADGQIRAMNPTWRDEFINRYWGAFLFNEYGLFNAHSQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAVPKAEWTNGEVYKSARLAVEGLWQEVFDWNESAFSVHAVYDALFGQFVRREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASRIDFKADRDQIVKAVLAGLK DIP protein P18798 original sequence version: 100 DIP protein P18798 original sequence version: 103 DIP protein P18798 original sequence version: 97 1737FEA30EEA9875 o87799_psest touB protein protein psest Pseudomonas stutzeri Pseudomonas perfectomarina MATFPIMSNFERDFVIQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFMDN DIP protein O87799 original sequence version: 44 DIP protein O87799 original sequence version: 38 669356DF62EE5FAE cara_ecoli Carbamoyl-phosphate synthase small chain carA pyrA b0032 Carbamoyl-phosphate synthetase glutamine chain JW0030 protein protein ecoli Escherichia coli (strain K12) MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK DIP protein P0A6F1 original sequence version: 58 DIP protein P0A6F1 original sequence version: 82 60BC26366417443F o87798_psest touA protein protein psest Pseudomonas stutzeri Pseudomonas perfectomarina MSMLKREDWYDLTRTTNWTPKYVTENELFPEEMSGARGISMEAWEKYDEPYKITYPEYVSIQREKDSGAYSIKAALERDGFVDRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKAIHTNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWYWRPTVWWDPAAGVSPEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICNMCNLPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQIDPERYKNHTNLVDRFLKGEIQPADLAGALMYMSLEPGVMGDDAHDYEWVKAYQKKTNAA DIP protein O87798 original sequence version: 65 DIP protein O87798 original sequence version: 56 E49B0C06D5BB43D8 acca_ecoli Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha accA b0185 JW0180 protein protein ecoli Escherichia coli (strain K12) MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGYA DIP protein P0ABD5 original sequence version: 47 DIP protein P0ABD5 original sequence version: 71 A810DE891CEA2B4F trpb_salty Tryptophan synthase beta chain trpB STM1726 protein protein salty Salmonella typhimurium MTTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDILKARGEI DIP protein P0A2K1 original sequence version: 72 DIP protein P0A2K1 original sequence version: 62 73D210F5C6F2FEBD mmox-mmoy-3 3 10 unspecified role unspecified role unspecified role unspecified role metca Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) 18 unspecified role unspecified role unspecified role unspecified role metca Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) 16 unspecified role unspecified role unspecified role unspecified role metca Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) physical association physical association cara-carb-16 5 20 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli 11 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction trpa-trpb-24 6 23 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli 13 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction nbzad-1 4 17 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction trpb-2 7 23 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction toua-toub-7 2 12 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli 19 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli 21 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli physical association physical association mmox-mmoy-4 8 18 unspecified role unspecified role unspecified role unspecified role metca Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) 16 unspecified role unspecified role unspecified role unspecified role metca Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) direct interaction direct interaction acca-accd-13 1 14 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli 22 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction nbzac-nbzad-5 9 17 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli 15 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction