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  <entry>
    <source releaseDate="2022-02-03">
      <names>
        <shortLabel>DIP</shortLabel>
        <fullName>Database of Interacting Proteins</fullName>
      </names>
      <xref>
        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="pubmed" dbAc="MI:0446" id="14681454" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1579232" refType="identity" refTypeAc="MI:0356"/>
      </xref>
      <attributeList>
        <attribute name="postaladdress">611 Young Drive East; Los Angeles CA 90095; USA</attribute>
        <attribute name="url" nameAc="MI:0614">http://dip.doe-mbi.ucla.edu/</attribute>
        <attribute name="contact-email" nameAc="MI:0634">dip@mbi.ucla.edu</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex.</fullName>
        </names>
        <bibref>
          <xref>
            <primaryRef db="pubmed" dbAc="MI:0446" id="20876129" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="doi" dbAc="MI:0574" id="10.1073/pnas.1009598107" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15880709" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="imex" dbAc="MI:0670" id="IM-16494" refType="imex-primary" refTypeAc="MI:0662"/>
          </xref>
          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex.</attribute>
            <attribute name="journal" nameAc="MI:0885">Proceedings of the National Academy of Sciences of the United States of America</attribute>
            <attribute name="publication year" nameAc="MI:0886">2010</attribute>
            <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
            <attribute name="author-list" nameAc="MI:0636">Kobayashi K.,  Kikuno I.,  Kuroha K.,  Saito K.,  Ito K.,  Ishitani R.,  Inada T.,  Nureki O.</attribute>
            <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
          </attributeList>
        </bibref>
        <xref>
          <primaryRef db="imex" dbAc="MI:0670" id="IM-16494" refType="imex-primary" refTypeAc="MI:0662"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-220035X" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="wwpdb" dbAc="MI:0805" id="3AGJ" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="pubmed" dbAc="MI:0446" id="20876129" refType="primary-reference" refTypeAc="MI:0358"/>
          <secondaryRef db="doi" dbAc="MI:0574" id="10.1073/pnas.1009598107" refType="primary-reference" refTypeAc="MI:0358"/>
        </xref>
        <hostOrganismList>
          <hostOrganism ncbiTaxId="-1">
            <names>
              <shortLabel>in vitro</shortLabel>
              <fullName>In vitro</fullName>
            </names>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>x-ray diffraction</shortLabel>
            <fullName>x-ray crystallography</fullName>
            <alias type="go synonym" typeAc="MI:0303">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">x-ray diffraction</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0114" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1272" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>predetermined</shortLabel>
            <fullName>predetermined participant</fullName>
            <alias type="synonym" typeAc="MI:1041">predetermined</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1465" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </participantIdentificationMethod>
        <attributeList>
          <attribute name="author-list" nameAc="MI:0636">Kobayashi K., Kikuno I., Kuroha K., Saito K., Ito K., Ishitani R., Inada T., Nureki O.</attribute>
          <attribute name="comment" nameAc="MI:0612">DIP original experiment: DIP-220035X</attribute>
          <attribute name="journal" nameAc="MI:0885">Proceedings of the National Academy of Sciences of the United States of America</attribute>
          <attribute name="publication year" nameAc="MI:0886">2010</attribute>
          <attribute name="curation depth" nameAc="MI:0955">IMEx</attribute>
          <attribute name="title" nameAc="MI:1091">Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex.</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>ef1a_aerpe</shortLabel>
          <fullName>Elongation factor 1-alpha</fullName>
          <alias type="gene name" typeAc="MI:0301">tuf</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Elongation factor Tu</alias>
          <alias type="locus name" typeAc="MI:0305">APE_1844</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="Q9YAV0" version="68" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensemblbacteria" id="BAA80848" version="SP_125" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15880729" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensemblbacteria" id="APE_1844" version="SP_125" refType="gene"/>
          <secondaryRef db="ensemblbacteria" id="BAA80848" version="SP_125" refType="transcript"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0003746" version="SP_125"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0003924" version="SP_125"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005525" version="SP_125"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005737" version="SP_125"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR000795" version="SP_125"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR004160" version="SP_125"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR004161" version="SP_125"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR004539" version="SP_125"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR009000" version="SP_125"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR009001" version="SP_125"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR027417" version="SP_125"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR031157" version="SP_125"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3VMF" version="SP_125"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3WXM" version="SP_125"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4CXG" version="SP_125"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4CXH" version="SP_125"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6JI2" version="SP_125"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR005225" version="SP_125"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-59399N"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="272557">
          <names>
            <shortLabel>aerpe</shortLabel>
            <fullName>Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)</fullName>
          </names>
        </organism>
        <sequence>MAEKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVKPAKVDIKAK</sequence>
        <attributeList>
          <attribute name="crc64">D6AE87FEB8AD003C</attribute>
        </attributeList>
      </interactor>
      <interactor id="3">
        <names>
          <shortLabel>pelo_aerpe</shortLabel>
          <fullName>Protein pelota homolog</fullName>
          <alias type="gene name" typeAc="MI:0301">pelA</alias>
          <alias type="locus name" typeAc="MI:0305">APE_1800.1</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="Q9YAZ5" version="55" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensemblbacteria" id="BAA80803" version="SP_105" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15880754" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensemblbacteria" id="APE_1800.1" version="SP_105" refType="gene"/>
          <secondaryRef db="ensemblbacteria" id="BAA80803" version="SP_105" refType="transcript"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0004519" version="SP_105"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005737" version="SP_105"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0046872" version="SP_105"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0070481" version="SP_105"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0070966" version="SP_105"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0071025" version="SP_105"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR004405" version="SP_105"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR005140" version="SP_105"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR005142" version="SP_105"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR023521" version="SP_105"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR029064" version="SP_105"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR038069" version="SP_105"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR042226" version="SP_105"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3WXM" version="SP_105"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6JI2" version="SP_105"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-59400N"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="272557">
          <names>
            <shortLabel>aerpe</shortLabel>
            <fullName>Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)</fullName>
          </names>
        </organism>
        <sequence>MRVEVLDNKRRIVRLRPESEEDLWLLRITLRPGDVVRIRTSRDVPVGSGRKERVVMTLRIRLDSIEFQPFTGKLRISGIVVEGPDEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLASGRARGTAVIAAVDYDEFALAVLAGHGMKILEDTSARLPGKDDPSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQRAMPSLKVATVDTSMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERLVSFGGVIALLRYPVPQEARRL</sequence>
        <attributeList>
          <attribute name="crc64">389A5D27B7752986</attribute>
        </attributeList>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="4" imexId="IM-16494-1">
        <names>
          <shortLabel>aef1alpha-apelota-1</shortLabel>
        </names>
        <xref>
          <primaryRef db="dip" dbAc="MI:0465" id="DIP-187750E" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15880773" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="imex source"/>
          <secondaryRef db="imex" dbAc="MI:0670" id="IM-16494-1" refType="imex-primary" refTypeAc="MI:0662"/>
        </xref>
        <experimentList>
          <experimentRef>1</experimentRef>
        </experimentList>
        <participantList>
          <participant id="5">
            <interactorRef>3</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
              <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
              </xref>
            </biologicalRole>
            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>unspecified role</shortLabel>
                  <fullName>unspecified role</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1383079" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
              </experimentalRole>
            </experimentalRoleList>
            <hostOrganismList>
              <hostOrganism ncbiTaxId="562">
                <names>
                  <shortLabel>ecolx</shortLabel>
                  <fullName>Escherichia coli</fullName>
                </names>
              </hostOrganism>
            </hostOrganismList>
          </participant>
          <participant id="6">
            <interactorRef>2</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
              <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
              </xref>
            </biologicalRole>
            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>unspecified role</shortLabel>
                  <fullName>unspecified role</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1383079" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
              </experimentalRole>
            </experimentalRoleList>
            <hostOrganismList>
              <hostOrganism ncbiTaxId="562">
                <names>
                  <shortLabel>ecolx</shortLabel>
                  <fullName>Escherichia coli</fullName>
                </names>
              </hostOrganism>
            </hostOrganismList>
          </participant>
        </participantList>
        <interactionType>
          <names>
            <shortLabel>direct interaction</shortLabel>
            <fullName>direct interaction</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0407" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608833" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionType>
      </interaction>
    </interactionList>
  </entry>
</entrySet>