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  <entry>
    <source releaseDate="2022-02-03">
      <names>
        <shortLabel>DIP</shortLabel>
        <fullName>Database of Interacting Proteins</fullName>
      </names>
      <xref>
        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="pubmed" dbAc="MI:0446" id="14681454" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1579232" refType="identity" refTypeAc="MI:0356"/>
      </xref>
      <attributeList>
        <attribute name="postaladdress">611 Young Drive East; Los Angeles CA 90095; USA</attribute>
        <attribute name="url" nameAc="MI:0614">http://dip.doe-mbi.ucla.edu/</attribute>
        <attribute name="contact-email" nameAc="MI:0634">dip@mbi.ucla.edu</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing.</fullName>
        </names>
        <bibref>
          <xref>
            <primaryRef db="pubmed" dbAc="MI:0446" id="20479262" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="doi" dbAc="MI:0574" id="10.1073/pnas.1000848107" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15855008" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="imex" dbAc="MI:0670" id="IM-16416" refType="imex-primary" refTypeAc="MI:0662"/>
          </xref>
          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing.</attribute>
            <attribute name="journal" nameAc="MI:0885">Proceedings of the National Academy of Sciences of the United States of America</attribute>
            <attribute name="publication year" nameAc="MI:0886">2010</attribute>
            <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
            <attribute name="author-list" nameAc="MI:0636">Yang Q.,  Gilmartin GM.,  Doublié S.</attribute>
            <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
          </attributeList>
        </bibref>
        <xref>
          <primaryRef db="imex" dbAc="MI:0670" id="IM-16416" refType="imex-primary" refTypeAc="MI:0662"/>
          <secondaryRef db="wwpdb" dbAc="MI:0805" id="3MDI" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-219795X" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="wwpdb" dbAc="MI:0805" id="3MDG" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="pubmed" dbAc="MI:0446" id="20479262" refType="primary-reference" refTypeAc="MI:0358"/>
          <secondaryRef db="doi" dbAc="MI:0574" id="10.1073/pnas.1000848107" refType="primary-reference" refTypeAc="MI:0358"/>
        </xref>
        <hostOrganismList>
          <hostOrganism ncbiTaxId="562">
            <names>
              <shortLabel>ecolx</shortLabel>
              <fullName>Escherichia coli</fullName>
            </names>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>x-ray diffraction</shortLabel>
            <fullName>x-ray crystallography</fullName>
            <alias type="go synonym" typeAc="MI:0303">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">x-ray diffraction</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0114" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1272" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>predetermined</shortLabel>
            <fullName>predetermined participant</fullName>
            <alias type="synonym" typeAc="MI:1041">predetermined</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1465" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </participantIdentificationMethod>
        <attributeList>
          <attribute name="author-list" nameAc="MI:0636">Yang Q., Gilmartin GM., Doublié S.</attribute>
          <attribute name="comment" nameAc="MI:0612">DIP original experiment: DIP-219795X</attribute>
          <attribute name="journal" nameAc="MI:0885">Proceedings of the National Academy of Sciences of the United States of America</attribute>
          <attribute name="publication year" nameAc="MI:0886">2010</attribute>
          <attribute name="curation depth" nameAc="MI:0955">IMEx</attribute>
          <attribute name="title" nameAc="MI:1091">Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing.</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>cpsf5_human</shortLabel>
          <fullName>Cleavage and polyadenylation specificity factor subunit 5</fullName>
          <alias type="gene name" typeAc="MI:0301">NUDT21</alias>
          <alias type="gene name synonym" typeAc="MI:0302">CFIM25</alias>
          <alias type="gene name synonym" typeAc="MI:0302">CPSF25</alias>
          <alias type="gene name synonym" typeAc="MI:0302">CPSF5</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Cleavage and polyadenylation specificity factor 25 kDa subunit</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Nucleoside diphosphate-linked moiety X motif 21</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Cleavage factor Im complex 25 kDa subunit</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Nudix hydrolase 21</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Pre-mRNA cleavage factor Im 68 kDa subunit</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="O43809" version="SP_54" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="uniprotkb" dbAc="MI:0486" id="Q6IB85" version="SP_54" refType="secondary-ac" refTypeAc="MI:0360"/>
          <secondaryRef db="uniprotkb" dbAc="MI:0486" id="Q6NE84" version="SP_54" refType="secondary-ac" refTypeAc="MI:0360"/>
          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSP00000300291" version="SP_190" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-355720" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="NP_008937.1"/>
          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENSG00000167005" version="SP_190" refType="gene"/>
          <secondaryRef db="ensembl" dbAc="MI:0476" id="ENST00000300291" version="SP_190" refType="transcript"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0003682" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0003723" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0003729" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005634" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005654" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005737" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005813" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005847" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005849" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0006378" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0006397" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0010608" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0016604" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0016787" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0030154" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0031439" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0034451" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0035925" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042382" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042802" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042803" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042826" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0051262" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0051290" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0098789" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0110104" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:1900365" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:1990120" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:2000738" version="SP_190"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:2000975" version="SP_190"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR000086" version="SP_190"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR015797" version="SP_190"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR016706" version="SP_190"/>
          <secondaryRef db="mint" dbAc="MI:0471" id="O43809" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2CL3" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2J8Q" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3BAP" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3BHO" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3MDG" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3MDI" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3N9U" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3P5T" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3P6Y" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3Q2S" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3Q2T" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5R4P" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5R4Q" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5R4R" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5R4S" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5R4T" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5R4U" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5R64" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5R65" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5R66" version="SP_190"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5R67" version="SP_190"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-HSA-72163" version="SP_190"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-HSA-72187" version="SP_190"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-HSA-73856" version="SP_190"/>
          <secondaryRef db="reactome" dbAc="MI:0467" id="R-HSA-77595" version="SP_190"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-42502N"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="9606">
          <names>
            <shortLabel>human</shortLabel>
            <fullName>Homo sapiens</fullName>
            <alias type="synonym" typeAc="MI:1041">Human</alias>
          </names>
        </organism>
        <sequence>MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN</sequence>
        <attributeList>
          <attribute name="remark-internal">DIP protein O43809 original sequence version: 95</attribute>
          <attribute name="crc64">D204243E57F1CCC5</attribute>
        </attributeList>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="3" imexId="IM-16416-1">
        <names>
          <shortLabel>nudt21-1</shortLabel>
        </names>
        <xref>
          <primaryRef db="dip" dbAc="MI:0465" id="DIP-187632E" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15855029" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="imex source"/>
          <secondaryRef db="imex" dbAc="MI:0670" id="IM-16416-1" refType="imex-primary" refTypeAc="MI:0662"/>
        </xref>
        <experimentList>
          <experimentRef>1</experimentRef>
        </experimentList>
        <participantList>
          <participant id="4">
            <interactorRef>2</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
              <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
              </xref>
            </biologicalRole>
            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>unspecified role</shortLabel>
                  <fullName>unspecified role</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1383079" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
              </experimentalRole>
            </experimentalRoleList>
            <hostOrganismList>
              <hostOrganism ncbiTaxId="562">
                <names>
                  <shortLabel>ecolx</shortLabel>
                  <fullName>Escherichia coli</fullName>
                </names>
              </hostOrganism>
            </hostOrganismList>
          </participant>
        </participantList>
        <interactionType>
          <names>
            <shortLabel>direct interaction</shortLabel>
            <fullName>direct interaction</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0407" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608833" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionType>
      </interaction>
    </interactionList>
  </entry>
</entrySet>