<?xml version='1.0' encoding='UTF-8'?>
<entrySet xmlns="http://psi.hupo.org/mi/mif300" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/mi/mif300 https://raw.githubusercontent.com/HUPO-PSI/miXML/master/3.0/src/MIF300.xsd" level="3" version="0" minorVersion="0">
  <entry>
    <source releaseDate="2022-02-03">
      <names>
        <shortLabel>DIP</shortLabel>
        <fullName>Database of Interacting Proteins</fullName>
      </names>
      <xref>
        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="pubmed" dbAc="MI:0446" id="14681454" refType="identity" refTypeAc="MI:0356"/>
        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1579232" refType="identity" refTypeAc="MI:0356"/>
      </xref>
      <attributeList>
        <attribute name="postaladdress">611 Young Drive East; Los Angeles CA 90095; USA</attribute>
        <attribute name="url" nameAc="MI:0614">http://dip.doe-mbi.ucla.edu/</attribute>
        <attribute name="contact-email" nameAc="MI:0634">dip@mbi.ucla.edu</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>Coupling ATP utilization to protein remodeling by ClpB, a hexameric AAA+ protein.</fullName>
        </names>
        <bibref>
          <xref>
            <primaryRef db="pubmed" dbAc="MI:0446" id="19940245" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="doi" dbAc="MI:0574" id="10.1073/pnas.0911937106" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15816824" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="imex" dbAc="MI:0670" id="IM-17392" refType="imex-primary" refTypeAc="MI:0662"/>
          </xref>
          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">Coupling ATP utilization to protein remodeling by ClpB, a hexameric AAA+ protein.</attribute>
            <attribute name="journal" nameAc="MI:0885">Proceedings of the National Academy of Sciences of the United States of America</attribute>
            <attribute name="publication year" nameAc="MI:0886">2009</attribute>
            <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
            <attribute name="author-list" nameAc="MI:0636">Hoskins JR.,  Doyle SM.,  Wickner S.</attribute>
            <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
          </attributeList>
        </bibref>
        <xref>
          <primaryRef db="imex" dbAc="MI:0670" id="IM-17392" refType="imex-primary" refTypeAc="MI:0662"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-220698X" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="pubmed" dbAc="MI:0446" id="19940245" refType="primary-reference" refTypeAc="MI:0358"/>
          <secondaryRef db="doi" dbAc="MI:0574" id="10.1073/pnas.0911937106" refType="primary-reference" refTypeAc="MI:0358"/>
        </xref>
        <hostOrganismList>
          <hostOrganism ncbiTaxId="-1">
            <names>
              <shortLabel>in vitro</shortLabel>
              <fullName>In vitro</fullName>
            </names>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>protein folding</shortLabel>
            <fullName>protein folding/unfolding</fullName>
            <alias type="synonym" typeAc="MI:1041">protein folding</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:1031" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-5528688" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="19940245" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>predetermined</shortLabel>
            <fullName>predetermined participant</fullName>
            <alias type="synonym" typeAc="MI:1041">predetermined</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1465" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </participantIdentificationMethod>
        <attributeList>
          <attribute name="author-list" nameAc="MI:0636">Hoskins JR., Doyle SM., Wickner S.</attribute>
          <attribute name="comment" nameAc="MI:0612">DIP original experiment: DIP-220698X</attribute>
          <attribute name="journal" nameAc="MI:0885">Proceedings of the National Academy of Sciences of the United States of America</attribute>
          <attribute name="publication year" nameAc="MI:0886">2009</attribute>
          <attribute name="curation depth" nameAc="MI:0955">IMEx</attribute>
          <attribute name="title" nameAc="MI:1091">Coupling ATP utilization to protein remodeling by ClpB, a hexameric AAA+ protein.</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>repj_ecolx</shortLabel>
          <fullName>Regulatory protein RepA</fullName>
          <alias type="gene name" typeAc="MI:0301">repA</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="P20356" version="49" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15816843" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005524" version="SP_87"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0006276" version="SP_87"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR027417" version="SP_87"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR038724" version="SP_87"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1G8Y" version="SP_87"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1NLF" version="SP_87"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1OLO" version="SP_87"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="NP_044309.1"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="WP_000190708.1"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-59501N"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="562">
          <names>
            <shortLabel>ecolx</shortLabel>
            <fullName>Escherichia coli</fullName>
          </names>
        </organism>
        <sequence>MATHKPINILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADRWFRRHDGGVLKPAVLERQRKSKGVPRGEA</sequence>
        <attributeList>
          <attribute name="remark-internal">DIP protein P20356 original sequence version: 49</attribute>
        </attributeList>
      </interactor>
      <interactor id="3">
        <names>
          <shortLabel>clpb_ecoli</shortLabel>
          <fullName>Chaperone protein ClpB</fullName>
          <alias type="gene name" typeAc="MI:0301">clpB</alias>
          <alias type="gene name synonym" typeAc="MI:0302">htpM</alias>
          <alias type="locus name" typeAc="MI:0305">b2592</alias>
          <alias type="gene name synonym" typeAc="MI:0302">Heat shock protein F84.1</alias>
          <alias type="locus name" typeAc="MI:0305">JW2573</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="P63284" version="SP_43" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="uniprotkb" dbAc="MI:0486" id="P03815" version="SP_43" refType="secondary-ac" refTypeAc="MI:0360"/>
          <secondaryRef db="ensemblbacteria" id="AAC75641" version="SP_150" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensemblbacteria" id="BAA16476" version="SP_150" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-546182" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="ensemblbacteria" id="AAC75641" version="SP_150" refType="transcript"/>
          <secondaryRef db="ensemblbacteria" id="b2592" version="SP_150" refType="gene"/>
          <secondaryRef db="ensemblbacteria" id="BAA16476" version="SP_150" refType="gene"/>
          <secondaryRef db="ensemblbacteria" id="BAA16476" version="SP_150" refType="transcript"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005524" version="SP_150"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005737" version="SP_150"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0005829" version="SP_150"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0009408" version="SP_150"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0016020" version="SP_150"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0034605" version="SP_150"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042026" version="SP_150"/>
          <secondaryRef db="go" dbAc="MI:0448" id="GO:0042802" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR001270" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR003593" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR003959" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR004176" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR017730" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR018368" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR019489" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR027417" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR028299" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR036628" version="SP_150"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR041546" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1JBK" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1KHY" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4CIU" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4D2Q" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4D2U" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4D2X" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5OFO" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="5OG1" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6OAX" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6OAY" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6OG1" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6OG2" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6OG3" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6QS6" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6QS7" version="SP_150"/>
          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6QS8" version="SP_150"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="NP_417083.1"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="WP_001235102.1"/>
          <secondaryRef db="mint" dbAc="MI:0471" id="P63284"/>
          <secondaryRef db="dip" dbAc="MI:0465" id="DIP-35844N"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="83333">
          <names>
            <shortLabel>ecoli</shortLabel>
            <fullName>Escherichia coli (strain K12)</fullName>
          </names>
        </organism>
        <sequence>MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ</sequence>
        <attributeList>
          <attribute name="remark-internal">DIP protein P63284 original sequence version: 59</attribute>
          <attribute name="remark-internal">DIP protein P63284-1 original sequence version: 76</attribute>
          <attribute name="remark-internal">DIP protein P63284 original sequence version: 95</attribute>
          <attribute name="remark-internal">DIP protein P63284 original sequence version: 90</attribute>
          <attribute name="crc64">FD38CD96B2F7C32A</attribute>
        </attributeList>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="4" imexId="IM-17392-1">
        <names>
          <shortLabel>clpb-repa-1</shortLabel>
        </names>
        <xref>
          <primaryRef db="dip" dbAc="MI:0465" id="DIP-188193E" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15816857" refType="identity" refTypeAc="MI:0356"/>
          <secondaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="imex source"/>
          <secondaryRef db="imex" dbAc="MI:0670" id="IM-17392-1" refType="imex-primary" refTypeAc="MI:0662"/>
        </xref>
        <experimentList>
          <experimentRef>1</experimentRef>
        </experimentList>
        <participantList>
          <participant id="5">
            <interactorRef>3</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
              <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
              </xref>
            </biologicalRole>
            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>unspecified role</shortLabel>
                  <fullName>unspecified role</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1383079" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
              </experimentalRole>
            </experimentalRoleList>
            <hostOrganismList>
              <hostOrganism ncbiTaxId="562">
                <names>
                  <shortLabel>ecolx</shortLabel>
                  <fullName>Escherichia coli</fullName>
                </names>
              </hostOrganism>
            </hostOrganismList>
          </participant>
          <participant id="6">
            <interactorRef>2</interactorRef>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
              <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
              </xref>
            </biologicalRole>
            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>unspecified role</shortLabel>
                  <fullName>unspecified role</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1383079" refType="identity" refTypeAc="MI:0356"/>
                  <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
              </experimentalRole>
            </experimentalRoleList>
            <hostOrganismList>
              <hostOrganism ncbiTaxId="562">
                <names>
                  <shortLabel>ecolx</shortLabel>
                  <fullName>Escherichia coli</fullName>
                </names>
              </hostOrganism>
            </hostOrganismList>
          </participant>
        </participantList>
        <interactionType>
          <names>
            <shortLabel>direct interaction</shortLabel>
            <fullName>direct interaction</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0407" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608833" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionType>
      </interaction>
    </interactionList>
  </entry>
</entrySet>